AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0484840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0484840 MtrunA17_Chr1g0212611 90.873 504 30 5 1 502 1 490 0.0 793
Msa0484840 MtrunA17_Chr4g0058151 28.161 174 113 6 222 387 123 292 1.67e-14 74.3
Msa0484840 MtrunA17_Chr4g0038111 25.500 200 129 6 206 389 325 520 2.78e-13 72.4
Msa0484840 MtrunA17_Chr3g0116631 29.213 178 109 6 222 387 110 282 2.06e-12 67.8
Msa0484840 MtrunA17_Chr7g0267571 25.137 183 124 5 218 387 106 288 8.22e-12 66.2
Msa0484840 MtrunA17_Chr1g0177101 26.630 184 121 7 222 394 109 289 2.61e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0484840 AT3G55340.1 42.808 292 128 6 210 492 150 411 3.86e-69 232
Msa0484840 AT3G18610.2 26.178 191 128 5 210 391 314 500 4.53e-14 75.1
Msa0484840 AT3G18610.3 26.178 191 128 5 210 391 344 530 4.70e-14 75.1
Msa0484840 AT3G18610.1 26.178 191 128 5 210 391 374 560 5.84e-14 75.1
Msa0484840 AT1G60000.1 29.651 172 117 4 219 387 83 253 4.74e-13 69.7
Msa0484840 AT4G24770.1 28.655 171 116 5 222 387 151 320 6.18e-13 70.5
Msa0484840 AT4G24770.2 28.655 171 116 5 222 387 151 320 6.18e-13 70.5
Msa0484840 AT5G50250.1 28.070 171 117 5 222 387 114 283 1.89e-12 68.6
Msa0484840 AT1G01080.3 27.647 170 110 4 222 378 109 278 1.25e-11 65.9
Msa0484840 AT1G01080.1 27.326 172 112 4 222 380 109 280 3.44e-11 64.7
Msa0484840 AT2G16940.1 26.064 188 125 5 223 397 184 370 3.62e-11 65.9

Find 114 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATATCCCTCCTTCATTTC+TGG 0.108973 3_4:+2341583 None:intergenic
ATCATTCTCCTCTGCAATTT+TGG 0.128702 3_4:+2343595 None:intergenic
CCTCACCTTAAAACTAATTA+TGG 0.226944 3_4:+2342067 None:intergenic
ATTCAGCGTTAATCTGGTTT+AGG 0.239346 3_4:+2344098 None:intergenic
GAAGCAGCTATTTGTGGGTT+TGG 0.284241 3_4:+2341025 None:intergenic
TTCCTGACACTGGCAAGTTT+AGG 0.286520 3_4:-2342097 Msa0484840:CDS
TCCTGACACTGGCAAGTTTA+GGG 0.287968 3_4:-2342096 Msa0484840:CDS
AAGAAGAAGAAGAATGAAAA+TGG 0.309818 3_4:-2343815 Msa0484840:CDS
TTCAGCGTTAATCTGGTTTA+GGG 0.321694 3_4:+2344099 None:intergenic
AAGCAGCTATTTGTGGGTTT+GGG 0.330204 3_4:+2341026 None:intergenic
CCTTCATTTCTGGAGTAAAT+CGG 0.343732 3_4:+2341593 None:intergenic
TTTGGTTCCATCATCTTCAT+TGG 0.353266 3_4:+2343955 None:intergenic
GATTAGATTCAGCGTTAATC+TGG 0.363787 3_4:+2344092 None:intergenic
ATGAAAATGGTGTGGCTAAT+GGG 0.368284 3_4:-2343802 Msa0484840:CDS
TGCTACGGGTGTCGTCAAAA+AGG 0.378482 3_4:-2341067 Msa0484840:CDS
GCAGGTTCCAAACCAGTTGC+AGG 0.384369 3_4:-2341313 Msa0484840:CDS
CTTTATATCAAAGACTGAAA+AGG 0.385355 3_4:+2340849 None:intergenic
TGTTCATGCAGTCAAGAAAA+TGG 0.388079 3_4:-2342233 Msa0484840:intron
TTTAGAACCTGCAACTGGTT+TGG 0.388692 3_4:+2341306 None:intergenic
GTTGCAAAGGTCGAAGCTTT+CGG 0.389760 3_4:+2343987 None:intergenic
TTTCCACTTGCAACAGAACT+TGG 0.391674 3_4:+2341106 None:intergenic
AACAAAACTGCAGAGGAAAA+TGG 0.393203 3_4:-2343623 Msa0484840:CDS
TAATGGGGTTGTTGTTGTTA+AGG 0.395655 3_4:-2343714 Msa0484840:CDS
GTCATCCTCACTTGAATAGT+AGG 0.395730 3_4:+2342175 None:intergenic
ACACAATCAAGCCGTCTTCA+TGG 0.402597 3_4:+2340943 None:intergenic
AATGAAAATGGTGTGGCTAA+TGG 0.404188 3_4:-2343803 Msa0484840:CDS
ATCAAGAGCCAATGCTCGTT+TGG 0.407420 3_4:+2341758 None:intergenic
CCCCTAAACTTGCCAGTGTC+AGG 0.419850 3_4:+2342095 None:intergenic
AGTGATGATGATGTGGCTAA+TGG 0.422711 3_4:-2343767 Msa0484840:CDS
ACTGGTTTGGAACCTGCAAC+TGG 0.424778 3_4:+2341319 None:intergenic
CTTAGACAAAATGGGTTTGT+TGG 0.429669 3_4:+2344021 None:intergenic
AAACGAGCATTGGCTCTTGA+TGG 0.432294 3_4:-2341756 Msa0484840:CDS
GAAATTGGAAATGAGGGTTT+CGG 0.434366 3_4:-2343926 Msa0484840:CDS
TCTTGTTTGGAAGGCCTGTC+AGG 0.436677 3_4:-2341372 Msa0484840:CDS
TTTATATCAAAGACTGAAAA+GGG 0.437811 3_4:+2340850 None:intergenic
TTTATTGATTTATTCACAAA+TGG 0.438080 3_4:-2340783 Msa0484840:three_prime_UTR
CTTCATTTCTGGAGTAAATC+GGG 0.442986 3_4:+2341594 None:intergenic
TTGGACCAAAGTGTCTTGTT+TGG 0.444576 3_4:-2341385 Msa0484840:CDS
AGATGAATCAATTGAAAAGA+AGG 0.446995 3_4:-2343858 Msa0484840:CDS
GTACAACAAAATCAAAGCTT+TGG 0.454292 3_4:+2340725 None:intergenic
AATGATGATAGTGTTGCTAA+TGG 0.456928 3_4:-2343731 Msa0484840:CDS
AGAGAGTTTGAAGAAGAAGA+AGG 0.458401 3_4:+2344067 None:intergenic
ATGATGATAGTGTTGCTAAT+GGG 0.460576 3_4:-2343730 Msa0484840:CDS
CTTCTCAAATTGCAATGTAA+AGG 0.461827 3_4:-2341503 Msa0484840:CDS
GTTGCTTGAGTTGCTTTACA+TGG 0.466789 3_4:+2341616 None:intergenic
GTGATGATGATGTGGCTAAT+GGG 0.468531 3_4:-2343766 Msa0484840:CDS
CCTGGTTTAGAACCTGCAAC+TGG 0.468577 3_4:+2341301 None:intergenic
AATGCCACAATCTACGGTAT+TGG 0.479144 3_4:-2343555 Msa0484840:CDS
CAGTAGAAGCAGCTATTTGT+GGG 0.480573 3_4:+2341020 None:intergenic
CTTGGTATGGACAAGGAAAC+GGG 0.485470 3_4:-2341472 Msa0484840:CDS
GCAGTTGAGCAACCAGGTGC+AGG 0.486239 3_4:-2341151 Msa0484840:CDS
ACTTGGTATGGACAAGGAAA+CGG 0.498089 3_4:-2341473 Msa0484840:CDS
ACCAAAGTGTCTTGTTTGGA+AGG 0.502106 3_4:-2341381 Msa0484840:CDS
AGCAGCGGCCAAACGAGCAT+TGG 0.504558 3_4:-2341766 Msa0484840:CDS
GCTACGAAAGTTTATGTTGG+AGG 0.506031 3_4:-2342203 Msa0484840:CDS
AACGAGGAAATTGGAAATGA+GGG 0.508780 3_4:-2343932 Msa0484840:CDS
ACTCAATCCAATGAAGATGA+TGG 0.516122 3_4:-2343962 Msa0484840:CDS
CCGATTTACTCCAGAAATGA+AGG 0.517469 3_4:-2341593 Msa0484840:CDS
AAACGAGGAAATTGGAAATG+AGG 0.518572 3_4:-2343933 Msa0484840:CDS
TACTGCACTTTGAAGCATGC+AGG 0.519924 3_4:-2341002 Msa0484840:exon
AGAGGAAATGCCACAATCTA+CGG 0.521392 3_4:-2343561 Msa0484840:CDS
GCCTTCCAAACAAGACACTT+TGG 0.522248 3_4:+2341380 None:intergenic
ATATCGTTCCGCCATGAAGA+CGG 0.522923 3_4:-2340954 Msa0484840:three_prime_UTR
TTGGATTGAGTTTGTTGCAA+AGG 0.528061 3_4:+2343974 None:intergenic
CTTGTCCATACCAAGTCGTA+TGG 0.528600 3_4:+2341480 None:intergenic
AAAGGCCATACGACTTGGTA+TGG 0.529863 3_4:-2341485 Msa0484840:CDS
GCAGTAGAAGCAGCTATTTG+TGG 0.531101 3_4:+2341019 None:intergenic
CATGCAATTAATTTCAGTGA+TGG 0.534530 3_4:+2342124 None:intergenic
GGATATAATAGAATATATGT+TGG 0.535480 3_4:-2341568 Msa0484840:CDS
CCTGACACTGGCAAGTTTAG+GGG 0.542201 3_4:-2342095 Msa0484840:CDS
GAGTTTGAAGAAGAAGAAGG+TGG 0.543166 3_4:+2344070 None:intergenic
GTTGCTACGAAAGTTTATGT+TGG 0.543964 3_4:-2342206 Msa0484840:CDS
AACAAAATCAAAGCTTTGGT+AGG 0.544766 3_4:+2340729 None:intergenic
GAACTTGGTTGCTCAACAGT+TGG 0.545048 3_4:+2341121 None:intergenic
ACTGAAGACAGCACTTGCAT+TGG 0.546883 3_4:-2341404 Msa0484840:CDS
AGACAAAATGGGTTTGTTGG+TGG 0.554333 3_4:+2344024 None:intergenic
GCAGGTTCTAAACCAGGTGC+AGG 0.555413 3_4:-2341295 Msa0484840:CDS
CAACCAAGTTCTGTTGCAAG+TGG 0.556840 3_4:-2341109 Msa0484840:CDS
ACCGCACAACTTATCCTGAC+AGG 0.558651 3_4:+2341358 None:intergenic
AACTGCAGAGGAAAATGGTA+AGG 0.561255 3_4:-2343618 Msa0484840:CDS
TCATCCTCACTTGAATAGTA+GGG 0.561329 3_4:+2342176 None:intergenic
TCATTTGCAGTTGAGCAACC+AGG 0.564422 3_4:-2341157 Msa0484840:CDS
AATGTAAAGGCCATACGACT+TGG 0.565382 3_4:-2341490 Msa0484840:CDS
CTGACACTGGCAAGTTTAGG+GGG 0.568128 3_4:-2342094 Msa0484840:CDS
TATATGTTGGAAGTCTGTCA+TGG 0.574488 3_4:-2341555 Msa0484840:CDS
AAATAACAGAGGAAGAACTA+AGG 0.575629 3_4:-2341531 Msa0484840:CDS
AAGGAAACGGGAGAATTTCG+AGG 0.577973 3_4:-2341460 Msa0484840:CDS
CCAGTTGCAGGTTCTAAACC+AGG 0.578088 3_4:-2341301 Msa0484840:CDS
AGGAAGAATAGAATGTGCTA+CGG 0.579726 3_4:-2341082 Msa0484840:CDS
TGAAAATGGTGTGGCTAATG+GGG 0.585256 3_4:-2343801 Msa0484840:CDS
TGATGATGATGTGGCTAATG+GGG 0.585907 3_4:-2343765 Msa0484840:CDS
GTTCTGTTGCAAGTGGAAAG+AGG 0.588009 3_4:-2341102 Msa0484840:CDS
AAAGAAGAACAAAACTGCAG+AGG 0.588575 3_4:-2343630 Msa0484840:CDS
CTAACACTACTACCACTACA+AGG 0.592037 3_4:-2343532 Msa0484840:intron
TGATGATAGTGTTGCTAATG+GGG 0.592050 3_4:-2343729 Msa0484840:CDS
ATATGTTGGAAGTCTGTCAT+GGG 0.601270 3_4:-2341554 Msa0484840:CDS
GGAAGAATAGAATGTGCTAC+GGG 0.605374 3_4:-2341081 Msa0484840:CDS
GAAGAAGAATGAAAATGGTG+TGG 0.615435 3_4:-2343810 Msa0484840:CDS
AAATAGGACAGTATCTGTAG+TGG 0.615605 3_4:-2340902 Msa0484840:three_prime_UTR
GTTGAGCAACCAGGTGCAGG+AGG 0.622181 3_4:-2341148 Msa0484840:CDS
ATAGATAAATCACCTTGTAG+TGG 0.629770 3_4:+2343520 None:intergenic
GAATGATTCTAATCATCAAG+AGG 0.630329 3_4:-2343579 Msa0484840:CDS
TTAGCCAATACCGTAGATTG+TGG 0.631628 3_4:+2343551 None:intergenic
CATACGACTTGGTATGGACA+AGG 0.655913 3_4:-2341479 Msa0484840:CDS
TTTACTCCAGAAATGAAGGA+GGG 0.658643 3_4:-2341589 Msa0484840:CDS
GCCTGTCAGGATAAGTTGTG+CGG 0.659328 3_4:-2341359 Msa0484840:CDS
ATTTACTCCAGAAATGAAGG+AGG 0.660456 3_4:-2341590 Msa0484840:CDS
GAAGAAGAGTGATGATGATG+TGG 0.667326 3_4:-2343774 Msa0484840:CDS
TGGTAAGGCCAAAATTGCAG+AGG 0.668394 3_4:-2343603 Msa0484840:CDS
AGGAAACGGGAGAATTTCGA+GGG 0.671275 3_4:-2341459 Msa0484840:CDS
AATTCCCTACTATTCAAGTG+AGG 0.689712 3_4:-2342180 Msa0484840:CDS
TCTGTCATGGGAAATAACAG+AGG 0.691463 3_4:-2341542 Msa0484840:CDS
CTTCCTGCAGACTGAAGCAG+CGG 0.704303 3_4:-2341781 Msa0484840:intron
CAATCAAGCCGTCTTCATGG+CGG 0.743839 3_4:+2340946 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTGAAAAAAACAAAAT+AGG - chr3_4:2343961-2343980 Msa0484840:CDS 10.0%
!!! TTTTTTTTTCTTACTTATGA+AGG - chr3_4:2341391-2341410 Msa0484840:CDS 15.0%
!!! ATTTTTATTTAATGTGTGTT+TGG - chr3_4:2341474-2341493 Msa0484840:CDS 15.0%
!!! ATTGATTTTGAATGAATTTA+TGG - chr3_4:2341513-2341532 Msa0484840:CDS 15.0%
!! ATCAATATTAAGTATATGTT+TGG + chr3_4:2341675-2341694 None:intergenic 15.0%
!! AGATAATCAATTAAAAAACT+GGG + chr3_4:2342617-2342636 None:intergenic 15.0%
!! TAAAACATTTAATGTTAACA+GGG - chr3_4:2343217-2343236 Msa0484840:intron 15.0%
!!! TTTATTGATTTATTCACAAA+TGG - chr3_4:2344096-2344115 Msa0484840:CDS 15.0%
!! CTATTAATTCACATAAAAAT+TGG + chr3_4:2344124-2344143 None:intergenic 15.0%
!! TGCAAAAAAATCAATGAAAA+AGG - chr3_4:2341189-2341208 Msa0484840:CDS 20.0%
!!! AATCAATGATACTTTAAAAG+TGG - chr3_4:2341647-2341666 Msa0484840:intron 20.0%
!!! TTAATATTGATTTTGTGTGA+AGG - chr3_4:2341684-2341703 Msa0484840:intron 20.0%
!! CAATAATAGAATGATAAATG+AGG - chr3_4:2341774-2341793 Msa0484840:CDS 20.0%
!! AATTACTCTTTCAAAAAATG+TGG - chr3_4:2342290-2342309 Msa0484840:intron 20.0%
!!! GTTTCAATTAAAGTTTTTCT+AGG + chr3_4:2342448-2342467 None:intergenic 20.0%
!! TGATATATGATAGAACATTA+TGG - chr3_4:2342513-2342532 Msa0484840:intron 20.0%
!! ACAATAATAACAACAATCAA+GGG + chr3_4:2342562-2342581 None:intergenic 20.0%
!! AACAATAATAACAACAATCA+AGG + chr3_4:2342563-2342582 None:intergenic 20.0%
!! CAGATAATCAATTAAAAAAC+TGG + chr3_4:2342618-2342637 None:intergenic 20.0%
!!! CATTTTTAGCTTTATTTTGT+TGG - chr3_4:2342846-2342865 Msa0484840:intron 20.0%
!! GTAAAACATTTAATGTTAAC+AGG - chr3_4:2343216-2343235 Msa0484840:intron 20.0%
!! AAAACATTTAATGTTAACAG+GGG - chr3_4:2343218-2343237 Msa0484840:intron 20.0%
!! GGATATAATAGAATATATGT+TGG - chr3_4:2343311-2343330 Msa0484840:intron 20.0%
!! GAAAAAAAATGACAACAATA+TGG + chr3_4:2344010-2344029 None:intergenic 20.0%
!! TTTATATCAAAGACTGAAAA+GGG + chr3_4:2344032-2344051 None:intergenic 20.0%
!! TATAAAGCAAGAAAAAATGT+AGG - chr3_4:2344046-2344065 Msa0484840:CDS 20.0%
!! ATAAAGCAAGAAAAAATGTA+GGG - chr3_4:2344047-2344066 Msa0484840:CDS 20.0%
! AGATGAATCAATTGAAAAGA+AGG - chr3_4:2341021-2341040 Msa0484840:CDS 25.0%
! AAGAAGAAGAAGAATGAAAA+TGG - chr3_4:2341064-2341083 Msa0484840:CDS 25.0%
! AAATGTCTCAAACAATGTAA+TGG - chr3_4:2341447-2341466 Msa0484840:CDS 25.0%
! TGACTAAAATTCAATTGTAG+AGG - chr3_4:2341577-2341596 Msa0484840:CDS 25.0%
! ATGAAAATATTGTAGAGAGT+TGG - chr3_4:2341848-2341867 Msa0484840:intron 25.0%
! TGAAAATATTGTAGAGAGTT+GGG - chr3_4:2341849-2341868 Msa0484840:intron 25.0%
! CATGTAGATTCTATATAGTA+AGG - chr3_4:2341939-2341958 Msa0484840:intron 25.0%
! TATATGATAGAACATTATGG+CGG - chr3_4:2342516-2342535 Msa0484840:intron 25.0%
!!! GATTGCCATAATTAGTTTTA+AGG - chr3_4:2342807-2342826 Msa0484840:intron 25.0%
!!! CATAATTAGTTTTAAGGTGA+GGG - chr3_4:2342813-2342832 Msa0484840:intron 25.0%
! CTATACTAGCAATACATTAT+AGG - chr3_4:2342950-2342969 Msa0484840:intron 25.0%
! GAAAATAATATATGAACCGA+TGG + chr3_4:2342983-2343002 None:intergenic 25.0%
!!! AATCGATTTTTGGAATTGTA+AGG + chr3_4:2343032-2343051 None:intergenic 25.0%
!!! CCATAATAAGAATCGATTTT+TGG + chr3_4:2343042-2343061 None:intergenic 25.0%
!! CCAAAAATCGATTCTTATTA+TGG - chr3_4:2343039-2343058 Msa0484840:intron 25.0%
! CTTTATATCAAAGACTGAAA+AGG + chr3_4:2344033-2344052 None:intergenic 25.0%
! TAAAGCAAGAAAAAATGTAG+GGG - chr3_4:2344048-2344067 Msa0484840:CDS 25.0%
! ATTTCCAATTTCCTCGTTTT+TGG + chr3_4:2340945-2340964 None:intergenic 30.0%
GAAAGAAGAAGAACAAAAAG+AGG - chr3_4:2340975-2340994 Msa0484840:three_prime_UTR 30.0%
GAACAAAAAGAGGAAAATGA+AGG - chr3_4:2340985-2341004 Msa0484840:three_prime_UTR 30.0%
! AATGATGATAGTGTTGCTAA+TGG - chr3_4:2341148-2341167 Msa0484840:CDS 30.0%
! ATGATGATAGTGTTGCTAAT+GGG - chr3_4:2341149-2341168 Msa0484840:CDS 30.0%
GAATGATTCTAATCATCAAG+AGG - chr3_4:2341300-2341319 Msa0484840:CDS 30.0%
ATAGATAAATCACCTTGTAG+TGG + chr3_4:2341362-2341381 None:intergenic 30.0%
GAAAATATTGTAGAGAGTTG+GGG - chr3_4:2341850-2341869 Msa0484840:intron 30.0%
! CTTACCATCTTTTCTACAAT+AGG + chr3_4:2341881-2341900 None:intergenic 30.0%
AGAAAAGATGGTAAGAAACT+CGG - chr3_4:2341886-2341905 Msa0484840:intron 30.0%
AAGAAATAGATGACATTGAG+AGG - chr3_4:2342027-2342046 Msa0484840:intron 30.0%
AGAAATAGATGACATTGAGA+GGG - chr3_4:2342028-2342047 Msa0484840:intron 30.0%
! AATTTAAAACCCTCCTCATT+TGG - chr3_4:2342133-2342152 Msa0484840:CDS 30.0%
! ATTTAAAACCCTCCTCATTT+GGG - chr3_4:2342134-2342153 Msa0484840:CDS 30.0%
GAACTCAAAAATTGTATTGG+AGG - chr3_4:2342158-2342177 Msa0484840:CDS 30.0%
TCAAAAATTGTATTGGAGGA+GGG - chr3_4:2342162-2342181 Msa0484840:CDS 30.0%
TAATAACAACAATCAAGGGT+CGG + chr3_4:2342558-2342577 None:intergenic 30.0%
!!! GACATTCACAGTTATTTTGA+AGG - chr3_4:2342724-2342743 Msa0484840:intron 30.0%
CATGCAATTAATTTCAGTGA+TGG + chr3_4:2342758-2342777 None:intergenic 30.0%
CCTCACCTTAAAACTAATTA+TGG + chr3_4:2342815-2342834 None:intergenic 30.0%
!!! CCATAATTAGTTTTAAGGTG+AGG - chr3_4:2342812-2342831 Msa0484840:intron 30.0%
! TCTTTTTGTGCTTCCTTATA+TGG - chr3_4:2342900-2342919 Msa0484840:intron 30.0%
CATTATAGGTCTATTTCCAT+CGG - chr3_4:2342964-2342983 Msa0484840:intron 30.0%
AAATAACAGAGGAAGAACTA+AGG - chr3_4:2343348-2343367 Msa0484840:intron 30.0%
CTTCTCAAATTGCAATGTAA+AGG - chr3_4:2343376-2343395 Msa0484840:intron 30.0%
! AACTGCAAATGATTTTTCAC+CGG + chr3_4:2343714-2343733 None:intergenic 30.0%
AAAGCAAGAAAAAATGTAGG+GGG - chr3_4:2344049-2344068 Msa0484840:CDS 30.0%
! TTCAGCGTTAATCTGGTTTA+GGG + chr3_4:2340783-2340802 None:intergenic 35.0%
! ATTCAGCGTTAATCTGGTTT+AGG + chr3_4:2340784-2340803 None:intergenic 35.0%
GATTAGATTCAGCGTTAATC+TGG + chr3_4:2340790-2340809 None:intergenic 35.0%
AGAGAGTTTGAAGAAGAAGA+AGG + chr3_4:2340815-2340834 None:intergenic 35.0%
! CTTAGACAAAATGGGTTTGT+TGG + chr3_4:2340861-2340880 None:intergenic 35.0%
! TTTTCGCGCTTAGACAAAAT+GGG + chr3_4:2340869-2340888 None:intergenic 35.0%
! TTTTTCGCGCTTAGACAAAA+TGG + chr3_4:2340870-2340889 None:intergenic 35.0%
!! TTGGATTGAGTTTGTTGCAA+AGG + chr3_4:2340908-2340927 None:intergenic 35.0%
ACTCAATCCAATGAAGATGA+TGG - chr3_4:2340917-2340936 Msa0484840:three_prime_UTR 35.0%
! TTTGGTTCCATCATCTTCAT+TGG + chr3_4:2340927-2340946 None:intergenic 35.0%
AAACGAGGAAATTGGAAATG+AGG - chr3_4:2340946-2340965 Msa0484840:three_prime_UTR 35.0%
AACGAGGAAATTGGAAATGA+GGG - chr3_4:2340947-2340966 Msa0484840:three_prime_UTR 35.0%
GAAATTGGAAATGAGGGTTT+CGG - chr3_4:2340953-2340972 Msa0484840:three_prime_UTR 35.0%
GAAGAAGAATGAAAATGGTG+TGG - chr3_4:2341069-2341088 Msa0484840:CDS 35.0%
AATGAAAATGGTGTGGCTAA+TGG - chr3_4:2341076-2341095 Msa0484840:CDS 35.0%
ATGAAAATGGTGTGGCTAAT+GGG - chr3_4:2341077-2341096 Msa0484840:CDS 35.0%
! TGATGATAGTGTTGCTAATG+GGG - chr3_4:2341150-2341169 Msa0484840:CDS 35.0%
! TAATGGGGTTGTTGTTGTTA+AGG - chr3_4:2341165-2341184 Msa0484840:CDS 35.0%
AAAGAAGAACAAAACTGCAG+AGG - chr3_4:2341249-2341268 Msa0484840:CDS 35.0%
AACAAAACTGCAGAGGAAAA+TGG - chr3_4:2341256-2341275 Msa0484840:CDS 35.0%
! ATCATTCTCCTCTGCAATTT+TGG + chr3_4:2341287-2341306 None:intergenic 35.0%
GTCTCAAACAATGTAATGGT+TGG - chr3_4:2341451-2341470 Msa0484840:CDS 35.0%
!! TTAATGTGTGTTTGGTGCTA+TGG - chr3_4:2341482-2341501 Msa0484840:CDS 35.0%
CAAGTTTGAATCAATTCTGG+AGG - chr3_4:2341621-2341640 Msa0484840:CDS 35.0%
AGCACCTATTGTAGAAAAGA+TGG - chr3_4:2341874-2341893 Msa0484840:intron 35.0%
AGGGGTTTGTAAAAAAAGGA+AGG - chr3_4:2341995-2342014 Msa0484840:intron 35.0%
GAAATAGATGACATTGAGAG+GGG - chr3_4:2342029-2342048 Msa0484840:intron 35.0%
AATTCAAAACCCTCCTCATT+TGG - chr3_4:2342080-2342099 Msa0484840:CDS 35.0%
ATTCAAAACCCTCCTCATTT+GGG - chr3_4:2342081-2342100 Msa0484840:CDS 35.0%
! TTTAAAACCCTCCTCATTTG+GGG - chr3_4:2342135-2342154 Msa0484840:CDS 35.0%
GGGGAACTCAAAAATTGTAT+TGG - chr3_4:2342155-2342174 Msa0484840:CDS 35.0%
CTCAAAAATTGTATTGGAGG+AGG - chr3_4:2342161-2342180 Msa0484840:CDS 35.0%
TCATCTGATTTACTTCCCTT+AGG + chr3_4:2342394-2342413 None:intergenic 35.0%
TAGAGATTAATGAGCTGGAT+AGG - chr3_4:2342486-2342505 Msa0484840:intron 35.0%
AGAGATTAATGAGCTGGATA+GGG - chr3_4:2342487-2342506 Msa0484840:intron 35.0%
TGTTCATGCAGTCAAGAAAA+TGG - chr3_4:2342646-2342665 Msa0484840:intron 35.0%
GTTGCTACGAAAGTTTATGT+TGG - chr3_4:2342673-2342692 Msa0484840:intron 35.0%
AATTCCCTACTATTCAAGTG+AGG - chr3_4:2342699-2342718 Msa0484840:intron 35.0%
TCATCCTCACTTGAATAGTA+GGG + chr3_4:2342706-2342725 None:intergenic 35.0%
TTTGTGCTTCCTTATATGGT+AGG - chr3_4:2342904-2342923 Msa0484840:intron 35.0%
GCAATCAATCCTACCATATA+AGG + chr3_4:2342916-2342935 None:intergenic 35.0%
ATTGATTGCAATGTTTCAGC+AGG - chr3_4:2342927-2342946 Msa0484840:intron 35.0%
ACATTTAATGTTAACAGGGG+AGG - chr3_4:2343221-2343240 Msa0484840:intron 35.0%
!! CTTCATTTCTGGAGTAAATC+GGG + chr3_4:2343288-2343307 None:intergenic 35.0%
!! CCTTCATTTCTGGAGTAAAT+CGG + chr3_4:2343289-2343308 None:intergenic 35.0%
ATTTACTCCAGAAATGAAGG+AGG - chr3_4:2343289-2343308 Msa0484840:intron 35.0%
TTTACTCCAGAAATGAAGGA+GGG - chr3_4:2343290-2343309 Msa0484840:intron 35.0%
TTATATCCCTCCTTCATTTC+TGG + chr3_4:2343299-2343318 None:intergenic 35.0%
TATATGTTGGAAGTCTGTCA+TGG - chr3_4:2343324-2343343 Msa0484840:intron 35.0%
ATATGTTGGAAGTCTGTCAT+GGG - chr3_4:2343325-2343344 Msa0484840:intron 35.0%
!!! GCAACTGGTTTTTTGTTCAA+AGG + chr3_4:2343548-2343567 None:intergenic 35.0%
TTGAACAAAAAACCAGTTGC+AGG - chr3_4:2343548-2343567 Msa0484840:CDS 35.0%
AGGAAGAATAGAATGTGCTA+CGG - chr3_4:2343797-2343816 Msa0484840:CDS 35.0%
AAATAGGACAGTATCTGTAG+TGG - chr3_4:2343977-2343996 Msa0484840:CDS 35.0%
GAGTTTGAAGAAGAAGAAGG+TGG + chr3_4:2340812-2340831 None:intergenic 40.0%
!! AGACAAAATGGGTTTGTTGG+TGG + chr3_4:2340858-2340877 None:intergenic 40.0%
!! AGATGATGGAACCAAAAACG+AGG - chr3_4:2340931-2340950 Msa0484840:three_prime_UTR 40.0%
GGAACCAAAAACGAGGAAAT+TGG - chr3_4:2340938-2340957 Msa0484840:three_prime_UTR 40.0%
TGAAAATGGTGTGGCTAATG+GGG - chr3_4:2341078-2341097 Msa0484840:CDS 40.0%
! GAAGAAGAGTGATGATGATG+TGG - chr3_4:2341105-2341124 Msa0484840:CDS 40.0%
! AGTGATGATGATGTGGCTAA+TGG - chr3_4:2341112-2341131 Msa0484840:CDS 40.0%
! GTGATGATGATGTGGCTAAT+GGG - chr3_4:2341113-2341132 Msa0484840:CDS 40.0%
! TGATGATGATGTGGCTAATG+GGG - chr3_4:2341114-2341133 Msa0484840:CDS 40.0%
AACTGCAGAGGAAAATGGTA+AGG - chr3_4:2341261-2341280 Msa0484840:CDS 40.0%
AGAGGAAATGCCACAATCTA+CGG - chr3_4:2341318-2341337 Msa0484840:CDS 40.0%
AATGCCACAATCTACGGTAT+TGG - chr3_4:2341324-2341343 Msa0484840:CDS 40.0%
TTAGCCAATACCGTAGATTG+TGG + chr3_4:2341331-2341350 None:intergenic 40.0%
CTAACACTACTACCACTACA+AGG - chr3_4:2341347-2341366 Msa0484840:CDS 40.0%
GCGCAAGTTTGAATCAATTC+TGG - chr3_4:2341618-2341637 Msa0484840:CDS 40.0%
TGATAAATGAGGATGTGCGT+TGG - chr3_4:2341785-2341804 Msa0484840:intron 40.0%
!! TAAGGCTTTGTTTGCGAGTT+TGG - chr3_4:2341957-2341976 Msa0484840:intron 40.0%
TTCAAAACCCTCCTCATTTG+GGG - chr3_4:2342082-2342101 Msa0484840:CDS 40.0%
TTAAAACCCTCCTCATTTGG+GGG - chr3_4:2342136-2342155 Msa0484840:CDS 40.0%
!!! TTTTTGAGTTCCCCCAAATG+AGG + chr3_4:2342149-2342168 None:intergenic 40.0%
! ATTGTATTGGAGGAGGGTTT+TGG - chr3_4:2342168-2342187 Msa0484840:CDS 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG + chr3_4:2342376-2342395 None:intergenic 40.0%
AAACTCCCAAACAAAGCCTA+AGG - chr3_4:2342375-2342394 Msa0484840:intron 40.0%
AACTCCCAAACAAAGCCTAA+GGG - chr3_4:2342376-2342395 Msa0484840:intron 40.0%
!! ACTTCCCTTAGGCTTTGTTT+GGG + chr3_4:2342383-2342402 None:intergenic 40.0%
!! TACTTCCCTTAGGCTTTGTT+TGG + chr3_4:2342384-2342403 None:intergenic 40.0%
GAGACTAGAGATTAATGAGC+TGG - chr3_4:2342481-2342500 Msa0484840:intron 40.0%
GCTACGAAAGTTTATGTTGG+AGG - chr3_4:2342676-2342695 Msa0484840:intron 40.0%
GTCATCCTCACTTGAATAGT+AGG + chr3_4:2342707-2342726 None:intergenic 40.0%
!!! CACAGTTATTTTGAAGGCTG+TGG - chr3_4:2342730-2342749 Msa0484840:intron 40.0%
! GTTGCTTGAGTTGCTTTACA+TGG + chr3_4:2343266-2343285 None:intergenic 40.0%
CCGATTTACTCCAGAAATGA+AGG - chr3_4:2343286-2343305 Msa0484840:intron 40.0%
TCTGTCATGGGAAATAACAG+AGG - chr3_4:2343337-2343356 Msa0484840:intron 40.0%
AATGTAAAGGCCATACGACT+TGG - chr3_4:2343389-2343408 Msa0484840:intron 40.0%
ACTTGGTATGGACAAGGAAA+CGG - chr3_4:2343406-2343425 Msa0484840:intron 40.0%
! TTGGACCAAAGTGTCTTGTT+TGG - chr3_4:2343494-2343513 Msa0484840:intron 40.0%
!! ACCAAAGTGTCTTGTTTGGA+AGG - chr3_4:2343498-2343517 Msa0484840:intron 40.0%
! TTTAGAACCTGCAACTGGTT+TGG + chr3_4:2343576-2343595 None:intergenic 40.0%
TCAGTTGCAGTTGAAAAACC+AGG - chr3_4:2343614-2343633 Msa0484840:CDS 40.0%
!! ATTGATTTTTCACCTGCACC+TGG + chr3_4:2343635-2343654 None:intergenic 40.0%
TCAGTTGCTGGTGAAAAATC+AGG - chr3_4:2343686-2343705 Msa0484840:CDS 40.0%
TTTCCACTTGCAACAGAACT+TGG + chr3_4:2343776-2343795 None:intergenic 40.0%
GGAAGAATAGAATGTGCTAC+GGG - chr3_4:2343798-2343817 Msa0484840:CDS 40.0%
AAGCAGCTATTTGTGGGTTT+GGG + chr3_4:2343856-2343875 None:intergenic 40.0%
CAGTAGAAGCAGCTATTTGT+GGG + chr3_4:2343862-2343881 None:intergenic 40.0%
GTTGCAAAGGTCGAAGCTTT+CGG + chr3_4:2340895-2340914 None:intergenic 45.0%
TGGTAAGGCCAAAATTGCAG+AGG - chr3_4:2341276-2341295 Msa0484840:CDS 45.0%
GATGGTAAGAAACTCGGCTT+AGG - chr3_4:2341892-2341911 Msa0484840:intron 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG - chr3_4:2341961-2341980 Msa0484840:intron 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG - chr3_4:2341962-2341981 Msa0484840:intron 45.0%
GGGGAGGGGTTTGTAAAAAA+AGG - chr3_4:2341991-2342010 Msa0484840:intron 45.0%
TAGATGACATTGAGAGGGGA+AGG - chr3_4:2342033-2342052 Msa0484840:intron 45.0%
TCAAAACCCTCCTCATTTGG+GGG - chr3_4:2342083-2342102 Msa0484840:CDS 45.0%
!!! TATTGGAGGAGGGTTTTGGA+GGG - chr3_4:2342172-2342191 Msa0484840:CDS 45.0%
TCTGGAGGGTTGGGAATATA+GGG + chr3_4:2342333-2342352 None:intergenic 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG + chr3_4:2342371-2342390 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr3_4:2342372-2342391 None:intergenic 45.0%
GAGAGTAGTCAAACCACTAG+AGG - chr3_4:2342412-2342431 Msa0484840:intron 45.0%
! TGCATGACTTTTCCTGACAC+TGG - chr3_4:2342772-2342791 Msa0484840:intron 45.0%
TTCCTGACACTGGCAAGTTT+AGG - chr3_4:2342782-2342801 Msa0484840:intron 45.0%
TCCTGACACTGGCAAGTTTA+GGG - chr3_4:2342783-2342802 Msa0484840:intron 45.0%
!! ACAACTTGCTGACGTTTCTG+TGG - chr3_4:2343071-2343090 Msa0484840:intron 45.0%
ATCAAGAGCCAATGCTCGTT+TGG + chr3_4:2343124-2343143 None:intergenic 45.0%
!! AAACGAGCATTGGCTCTTGA+TGG - chr3_4:2343123-2343142 Msa0484840:intron 45.0%
!! AAAGGCCATACGACTTGGTA+TGG - chr3_4:2343394-2343413 Msa0484840:intron 45.0%
CTTGTCCATACCAAGTCGTA+TGG + chr3_4:2343402-2343421 None:intergenic 45.0%
!! CATACGACTTGGTATGGACA+AGG - chr3_4:2343400-2343419 Msa0484840:intron 45.0%
CTTGGTATGGACAAGGAAAC+GGG - chr3_4:2343407-2343426 Msa0484840:intron 45.0%
AAGGAAACGGGAGAATTTCG+AGG - chr3_4:2343419-2343438 Msa0484840:intron 45.0%
AGGAAACGGGAGAATTTCGA+GGG - chr3_4:2343420-2343439 Msa0484840:intron 45.0%
ACTGAAGACAGCACTTGCAT+TGG - chr3_4:2343475-2343494 Msa0484840:intron 45.0%
GCCTTCCAAACAAGACACTT+TGG + chr3_4:2343502-2343521 None:intergenic 45.0%
!! ACTGATTTTTCACCTGCACC+TGG + chr3_4:2343599-2343618 None:intergenic 45.0%
!! ACTGATTTTTCAGCTGCAGC+TGG + chr3_4:2343671-2343690 None:intergenic 45.0%
GCAGCTGAAAAATCAGTTGC+TGG - chr3_4:2343674-2343693 Msa0484840:CDS 45.0%
TCATTTGCAGTTGAGCAACC+AGG - chr3_4:2343722-2343741 Msa0484840:CDS 45.0%
GAACTTGGTTGCTCAACAGT+TGG + chr3_4:2343761-2343780 None:intergenic 45.0%
CAACCAAGTTCTGTTGCAAG+TGG - chr3_4:2343770-2343789 Msa0484840:CDS 45.0%
GTTCTGTTGCAAGTGGAAAG+AGG - chr3_4:2343777-2343796 Msa0484840:CDS 45.0%
GAAGCAGCTATTTGTGGGTT+TGG + chr3_4:2343857-2343876 None:intergenic 45.0%
GCAGTAGAAGCAGCTATTTG+TGG + chr3_4:2343863-2343882 None:intergenic 45.0%
!! TACTGCACTTTGAAGCATGC+AGG - chr3_4:2343877-2343896 Msa0484840:CDS 45.0%
ATATCGTTCCGCCATGAAGA+CGG - chr3_4:2343925-2343944 Msa0484840:CDS 45.0%
ACACAATCAAGCCGTCTTCA+TGG + chr3_4:2343939-2343958 None:intergenic 45.0%
GGTAAGAAACTCGGCTTAGG+TGG - chr3_4:2341895-2341914 Msa0484840:intron 50.0%
GAAACTCGGCTTAGGTGGTT+TGG - chr3_4:2341900-2341919 Msa0484840:intron 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG - chr3_4:2341960-2341979 Msa0484840:intron 50.0%
TTTGCGAGTTTGGAGGGGAA+GGG - chr3_4:2341967-2341986 Msa0484840:intron 50.0%
ACATTGAGAGGGGAAGGCTT+TGG - chr3_4:2342039-2342058 Msa0484840:intron 50.0%
CATTGAGAGGGGAAGGCTTT+GGG - chr3_4:2342040-2342059 Msa0484840:intron 50.0%
ATTGAGAGGGGAAGGCTTTG+GGG - chr3_4:2342041-2342060 Msa0484840:intron 50.0%
CAAAACCCTCCTCATTTGGG+GGG - chr3_4:2342084-2342103 Msa0484840:CDS 50.0%
AAAACCCTCCTCATTTGGGG+GGG - chr3_4:2342085-2342104 Msa0484840:CDS 50.0%
TGAGTTCCCCCAAATGAGGA+GGG + chr3_4:2342145-2342164 None:intergenic 50.0%
TTGAGTTCCCCCAAATGAGG+AGG + chr3_4:2342146-2342165 None:intergenic 50.0%
!! GTATTGGAGGAGGGTTTTGG+AGG - chr3_4:2342171-2342190 Msa0484840:CDS 50.0%
CTGGAGGGTTGGGAATATAG+GGG + chr3_4:2342332-2342351 None:intergenic 50.0%
! CTCTGGAGGGTTGGGAATAT+AGG + chr3_4:2342334-2342353 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr3_4:2342373-2342392 None:intergenic 50.0%
AGTCAAACCACTAGAGGCAG+AGG - chr3_4:2342418-2342437 Msa0484840:intron 50.0%
ACAATCAAGGGTCGGCTACA+TGG + chr3_4:2342550-2342569 None:intergenic 50.0%
CCTGACACTGGCAAGTTTAG+GGG - chr3_4:2342784-2342803 Msa0484840:intron 50.0%
CTGACACTGGCAAGTTTAGG+GGG - chr3_4:2342785-2342804 Msa0484840:intron 50.0%
! TCTTGTTTGGAAGGCCTGTC+AGG - chr3_4:2343507-2343526 Msa0484840:intron 50.0%
GCCTGTCAGGATAAGTTGTG+CGG - chr3_4:2343520-2343539 Msa0484840:intron 50.0%
ACCGCACAACTTATCCTGAC+AGG + chr3_4:2343524-2343543 None:intergenic 50.0%
!! ACTGGTTTGGAACCTGCAAC+TGG + chr3_4:2343563-2343582 None:intergenic 50.0%
! CCTGGTTTAGAACCTGCAAC+TGG + chr3_4:2343581-2343600 None:intergenic 50.0%
!! CCAGTTGCAGGTTCTAAACC+AGG - chr3_4:2343578-2343597 Msa0484840:CDS 50.0%
GCAGTTGAAAAACCAGGTGC+AGG - chr3_4:2343620-2343639 Msa0484840:CDS 50.0%
GCTGGTGAAAAATCAGGTGC+CGG - chr3_4:2343692-2343711 Msa0484840:CDS 50.0%
! TGCTACGGGTGTCGTCAAAA+AGG - chr3_4:2343812-2343831 Msa0484840:CDS 50.0%
CAATCAAGCCGTCTTCATGG+CGG + chr3_4:2343936-2343955 None:intergenic 50.0%
GAGGATGTGCGTTGGATGTG+TGG - chr3_4:2341793-2341812 Msa0484840:intron 55.0%
GTTTGCGAGTTTGGAGGGGA+AGG - chr3_4:2341966-2341985 Msa0484840:intron 55.0%
AAACCCTCCTCATTTGGGGG+GGG - chr3_4:2342086-2342105 Msa0484840:CDS 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG + chr3_4:2342366-2342385 None:intergenic 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG + chr3_4:2342367-2342386 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG + chr3_4:2342368-2342387 None:intergenic 55.0%
AGGTCTTCCTCTGCCTCTAG+TGG + chr3_4:2342428-2342447 None:intergenic 55.0%
CCCCTAAACTTGCCAGTGTC+AGG + chr3_4:2342787-2342806 None:intergenic 55.0%
CTTCCTGCAGACTGAAGCAG+CGG - chr3_4:2343098-2343117 Msa0484840:intron 55.0%
GCAGGTTCCAAACCAGTTGC+AGG - chr3_4:2343566-2343585 Msa0484840:CDS 55.0%
!! GCAGGTTCTAAACCAGGTGC+AGG - chr3_4:2343584-2343603 Msa0484840:CDS 55.0%
!!! GTTGGTTTTCCTCCTGCACC+TGG + chr3_4:2343743-2343762 None:intergenic 55.0%
CGAGTTTGGAGGGGAAGGGA+GGG - chr3_4:2341971-2341990 Msa0484840:intron 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG - chr3_4:2341972-2341991 Msa0484840:intron 60.0%
AAGCCCCCCCCAAATGAGGA+GGG + chr3_4:2342092-2342111 None:intergenic 60.0%
AAAGCCCCCCCCAAATGAGG+AGG + chr3_4:2342093-2342112 None:intergenic 60.0%
TCCTCATTTGGGGGGGGCTT+TGG - chr3_4:2342092-2342111 Msa0484840:CDS 60.0%
CCTCATTTGGGGGGGGCTTT+GGG - chr3_4:2342093-2342112 Msa0484840:CDS 60.0%
CTCATTTGGGGGGGGCTTTG+GGG - chr3_4:2342094-2342113 Msa0484840:CDS 60.0%
!! AGGGAAGGCTCTGGAGGGTT+GGG + chr3_4:2342342-2342361 None:intergenic 60.0%
!! AAGGGAAGGCTCTGGAGGGT+TGG + chr3_4:2342343-2342362 None:intergenic 60.0%
GAGTTTGGAGGGGAGGGGAA+GGG + chr3_4:2342361-2342380 None:intergenic 60.0%
AGCAGCGGCCAAACGAGCAT+TGG - chr3_4:2343113-2343132 Msa0484840:intron 60.0%
GCAGTTGAGCAACCAGGTGC+AGG - chr3_4:2343728-2343747 Msa0484840:CDS 60.0%
GTTGAGCAACCAGGTGCAGG+AGG - chr3_4:2343731-2343750 Msa0484840:CDS 60.0%
GCGAGTTTGGAGGGGAAGGG+AGG - chr3_4:2341970-2341989 Msa0484840:intron 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG - chr3_4:2341975-2341994 Msa0484840:intron 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG - chr3_4:2341976-2341995 Msa0484840:intron 65.0%
CCCAAAGCCCCCCCCAAATG+AGG + chr3_4:2342096-2342115 None:intergenic 65.0%
!! GGGGAAGGGAAGGCTCTGGA+GGG + chr3_4:2342347-2342366 None:intergenic 65.0%
! AGGGGAAGGGAAGGCTCTGG+AGG + chr3_4:2342348-2342367 None:intergenic 65.0%
TTGGAGGGGAGGGGAAGGGA+AGG + chr3_4:2342357-2342376 None:intergenic 65.0%
GGAGTTTGGAGGGGAGGGGA+AGG + chr3_4:2342362-2342381 None:intergenic 65.0%
TGGCCGCTGCTTCAGTCTGC+AGG + chr3_4:2343104-2343123 None:intergenic 65.0%
TGGAGGGGAAGGGAGGGGAG+GGG - chr3_4:2341977-2341996 Msa0484840:intron 70.0%
GGGAGGGGAAGGGAAGGCTC+TGG + chr3_4:2342351-2342370 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 2340731 2344170 2340731 ID=Msa0484840;Name=Msa0484840
chr3_4 mRNA 2340731 2344170 2340731 ID=Msa0484840-mRNA-1;Parent=Msa0484840;Name=Msa0484840-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.75|1|1|1|4|281|502
chr3_4 exon 2340731 2341663 2340731 ID=Msa0484840-mRNA-1:exon:816;Parent=Msa0484840-mRNA-1
chr3_4 exon 2341747 2341793 2341747 ID=Msa0484840-mRNA-1:exon:815;Parent=Msa0484840-mRNA-1
chr3_4 exon 2342073 2342244 2342073 ID=Msa0484840-mRNA-1:exon:814;Parent=Msa0484840-mRNA-1
chr3_4 exon 2343533 2344170 2343533 ID=Msa0484840-mRNA-1:exon:813;Parent=Msa0484840-mRNA-1
chr3_4 CDS 2343533 2344170 2343533 ID=Msa0484840-mRNA-1:cds;Parent=Msa0484840-mRNA-1
chr3_4 CDS 2342073 2342244 2342073 ID=Msa0484840-mRNA-1:cds;Parent=Msa0484840-mRNA-1
chr3_4 CDS 2341747 2341793 2341747 ID=Msa0484840-mRNA-1:cds;Parent=Msa0484840-mRNA-1
chr3_4 CDS 2341012 2341663 2341012 ID=Msa0484840-mRNA-1:cds;Parent=Msa0484840-mRNA-1
chr3_4 three_prime_UTR 2340731 2341011 2340731 ID=Msa0484840-mRNA-1:three_prime_utr;Parent=Msa0484840-mRNA-1
Gene Sequence

>Msa0484840

ATGGTTCTATCAAACAAAAAGCTTAAACAGAAGCTTAGAGCTGAATTAACCCTAAACCAGATTAACGCTGAATCTAATCCACCTTCTTCTTCTTCAAACTCTCTTAAACTTCTTATTAACTCTTCCACCAACAAACCCATTTTGTCTAAGCGCGAAAAACTCCGAAAGCTTCGACCTTTGCAACAAACTCAATCCAATGAAGATGATGGAACCAAAAACGAGGAAATTGGAAATGAGGGTTTCGGAAAGAAGAAGAACAAAAAGAGGAAAATGAAGGTAGAAGAGAAAGAAGATGAATCAATTGAAAAGAAGGAGAAGCAAAATAAGAAGAAGAAGAAGAAGAAGAATGAAAATGGTGTGGCTAATGGGGTTGTGAAGAAGAGTGATGATGATGTGGCTAATGGGGTTGTGAAGAAGAATGATGATAGTGTTGCTAATGGGGTTGTTGTTGTTAAGGATGCAAAAAAATCAATGAAAAAGGAGAAGCAAAAGAAGAAGAATCAATTGAAGAAGAAGAGAAAGAAGAACAAAACTGCAGAGGAAAATGGTAAGGCCAAAATTGCAGAGGAGAATGATTCTAATCATCAAGAGGAAATGCCACAATCTACGGTATTGGCTAACACTACTACCACTACAAGTCAAGAAAATGGTGATGTTGCTACGAAAGTTTATGTTGGAGGAATTCCCTACTATTCAAGTGAGGATGACATTCACAGTTATTTTGAAGGCTGTGGCACCATCACTGAAATTAATTGCATGACTTTTCCTGACACTGGCAAGTTTAGGGGGATTGCCATAATTAGTTTTAAGACTGAAGCAGCGGCCAAACGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATTCAACCATGTAAAGCAACTCAAGCAACCCGATTTACTCCAGAAATGAAGGAGGGATATAATAGAATATATGTTGGAAGTCTGTCATGGGAAATAACAGAGGAAGAACTAAGGAAATTCTTCTCAAATTGCAATGTAAAGGCCATACGACTTGGTATGGACAAGGAAACGGGAGAATTTCGAGGGTATGCTCATGTTGATTTCAGTGATAGTCAGTCACTGAAGACAGCACTTGCATTGGACCAAAGTGTCTTGTTTGGAAGGCCTGTCAGGATAAGTTGTGCGGTTCCTTTGAACAAAAAACCAGTTGCAGGTTCCAAACCAGTTGCAGGTTCTAAACCAGGTGCAGGTGAAAAATCAGTTGCAGTTGAAAAACCAGGTGCAGGTGAAAAATCAATCGCAGTTGAAAAACCAGCTGCAGCTGAAAAATCAGTTGCTGGTGAAAAATCAGGTGCCGGTGAAAAATCATTTGCAGTTGAGCAACCAGGTGCAGGAGGAAAACCAACTGTTGAGCAACCAAGTTCTGTTGCAAGTGGAAAGAGGAAGAATAGAATGTGCTACGGGTGTCGTCAAAAAGGACATAATCTCTCAGAATGCCCAAACCCACAAATAGCTGCTTCTACTGCACTTTGA

Protein sequence

>Msa0484840

MVLSNKKLKQKLRAELTLNQINAESNPPSSSSNSLKLLINSSTNKPILSKREKLRKLRPLQQTQSNEDDGTKNEEIGNEGFGKKKNKKRKMKVEEKEDESIEKKEKQNKKKKKKKNENGVANGVVKKSDDDVANGVVKKNDDSVANGVVVVKDAKKSMKKEKQKKKNQLKKKRKKNKTAEENGKAKIAEENDSNHQEEMPQSTVLANTTTTTSQENGDVATKVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPCKATQATRFTPEMKEGYNRIYVGSLSWEITEEELRKFFSNCNVKAIRLGMDKETGEFRGYAHVDFSDSQSLKTALALDQSVLFGRPVRISCAVPLNKKPVAGSKPVAGSKPGAGEKSVAVEKPGAGEKSIAVEKPAAAEKSVAGEKSGAGEKSFAVEQPGAGGKPTVEQPSSVASGKRKNRMCYGCRQKGHNLSECPNPQIAASTAL*