AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0045490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045490 MtrunA17_Chr1g0212611 90.873 504 30 5 1 502 1 490 0.0 793
Msa0045490 MtrunA17_Chr4g0058151 28.161 174 113 6 222 387 123 292 1.67e-14 74.3
Msa0045490 MtrunA17_Chr4g0038111 25.500 200 129 6 206 389 325 520 2.78e-13 72.4
Msa0045490 MtrunA17_Chr3g0116631 29.213 178 109 6 222 387 110 282 2.06e-12 67.8
Msa0045490 MtrunA17_Chr7g0267571 25.137 183 124 5 218 387 106 288 8.22e-12 66.2
Msa0045490 MtrunA17_Chr1g0177101 26.630 184 121 7 222 394 109 289 2.61e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045490 AT3G55340.1 42.808 292 128 6 210 492 150 411 3.86e-69 232
Msa0045490 AT3G18610.2 26.178 191 128 5 210 391 314 500 4.53e-14 75.1
Msa0045490 AT3G18610.3 26.178 191 128 5 210 391 344 530 4.70e-14 75.1
Msa0045490 AT3G18610.1 26.178 191 128 5 210 391 374 560 5.84e-14 75.1
Msa0045490 AT1G60000.1 29.651 172 117 4 219 387 83 253 4.74e-13 69.7
Msa0045490 AT4G24770.1 28.655 171 116 5 222 387 151 320 6.18e-13 70.5
Msa0045490 AT4G24770.2 28.655 171 116 5 222 387 151 320 6.18e-13 70.5
Msa0045490 AT5G50250.1 28.070 171 117 5 222 387 114 283 1.89e-12 68.6
Msa0045490 AT1G01080.3 27.647 170 110 4 222 378 109 278 1.25e-11 65.9
Msa0045490 AT1G01080.1 27.326 172 112 4 222 380 109 280 3.44e-11 64.7
Msa0045490 AT2G16940.1 26.064 188 125 5 223 397 184 370 3.62e-11 65.9

Find 114 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATATCCCTCCTTCATTTC+TGG 0.108973 1_1:+77436577 None:intergenic
ATCATTCTCCTCTGCAATTT+TGG 0.128702 1_1:+77438589 None:intergenic
CCTCACCTTAAAACTAATTA+TGG 0.226944 1_1:+77437061 None:intergenic
ATTCAGCGTTAATCTGGTTT+AGG 0.239346 1_1:+77439092 None:intergenic
GAAGCAGCTATTTGTGGGTT+TGG 0.284241 1_1:+77436019 None:intergenic
TTCCTGACACTGGCAAGTTT+AGG 0.286520 1_1:-77437091 Msa0045490:CDS
TCCTGACACTGGCAAGTTTA+GGG 0.287968 1_1:-77437090 Msa0045490:CDS
AAGAAGAAGAAGAATGAAAA+TGG 0.309818 1_1:-77438809 Msa0045490:CDS
TTCAGCGTTAATCTGGTTTA+GGG 0.321694 1_1:+77439093 None:intergenic
AAGCAGCTATTTGTGGGTTT+GGG 0.330204 1_1:+77436020 None:intergenic
CCTTCATTTCTGGAGTAAAT+CGG 0.343732 1_1:+77436587 None:intergenic
TTTGGTTCCATCATCTTCAT+TGG 0.353266 1_1:+77438949 None:intergenic
GATTAGATTCAGCGTTAATC+TGG 0.363787 1_1:+77439086 None:intergenic
ATGAAAATGGTGTGGCTAAT+GGG 0.368284 1_1:-77438796 Msa0045490:CDS
TGCTACGGGTGTCGTCAAAA+AGG 0.378482 1_1:-77436061 Msa0045490:CDS
GCAGGTTCCAAACCAGTTGC+AGG 0.384369 1_1:-77436307 Msa0045490:CDS
CTTTATATCAAAGACTGAAA+AGG 0.385355 1_1:+77435843 None:intergenic
TGTTCATGCAGTCAAGAAAA+TGG 0.388079 1_1:-77437227 Msa0045490:intron
TTTAGAACCTGCAACTGGTT+TGG 0.388692 1_1:+77436300 None:intergenic
GTTGCAAAGGTCGAAGCTTT+CGG 0.389760 1_1:+77438981 None:intergenic
TTTCCACTTGCAACAGAACT+TGG 0.391674 1_1:+77436100 None:intergenic
AACAAAACTGCAGAGGAAAA+TGG 0.393203 1_1:-77438617 Msa0045490:CDS
TAATGGGGTTGTTGTTGTTA+AGG 0.395655 1_1:-77438708 Msa0045490:CDS
GTCATCCTCACTTGAATAGT+AGG 0.395730 1_1:+77437169 None:intergenic
ACACAATCAAGCCGTCTTCA+TGG 0.402597 1_1:+77435937 None:intergenic
AATGAAAATGGTGTGGCTAA+TGG 0.404188 1_1:-77438797 Msa0045490:CDS
ATCAAGAGCCAATGCTCGTT+TGG 0.407420 1_1:+77436752 None:intergenic
CCCCTAAACTTGCCAGTGTC+AGG 0.419850 1_1:+77437089 None:intergenic
AGTGATGATGATGTGGCTAA+TGG 0.422711 1_1:-77438761 Msa0045490:CDS
ACTGGTTTGGAACCTGCAAC+TGG 0.424778 1_1:+77436313 None:intergenic
CTTAGACAAAATGGGTTTGT+TGG 0.429669 1_1:+77439015 None:intergenic
AAACGAGCATTGGCTCTTGA+TGG 0.432294 1_1:-77436750 Msa0045490:CDS
GAAATTGGAAATGAGGGTTT+CGG 0.434366 1_1:-77438920 Msa0045490:CDS
TCTTGTTTGGAAGGCCTGTC+AGG 0.436677 1_1:-77436366 Msa0045490:CDS
TTTATATCAAAGACTGAAAA+GGG 0.437811 1_1:+77435844 None:intergenic
TTTATTGATTTATTCACAAA+TGG 0.438080 1_1:-77435777 Msa0045490:three_prime_UTR
CTTCATTTCTGGAGTAAATC+GGG 0.442986 1_1:+77436588 None:intergenic
TTGGACCAAAGTGTCTTGTT+TGG 0.444576 1_1:-77436379 Msa0045490:CDS
AGATGAATCAATTGAAAAGA+AGG 0.446995 1_1:-77438852 Msa0045490:CDS
GTACAACAAAATCAAAGCTT+TGG 0.454292 1_1:+77435719 None:intergenic
AATGATGATAGTGTTGCTAA+TGG 0.456928 1_1:-77438725 Msa0045490:CDS
AGAGAGTTTGAAGAAGAAGA+AGG 0.458401 1_1:+77439061 None:intergenic
ATGATGATAGTGTTGCTAAT+GGG 0.460576 1_1:-77438724 Msa0045490:CDS
CTTCTCAAATTGCAATGTAA+AGG 0.461827 1_1:-77436497 Msa0045490:CDS
GTTGCTTGAGTTGCTTTACA+TGG 0.466789 1_1:+77436610 None:intergenic
GTGATGATGATGTGGCTAAT+GGG 0.468531 1_1:-77438760 Msa0045490:CDS
CCTGGTTTAGAACCTGCAAC+TGG 0.468577 1_1:+77436295 None:intergenic
AATGCCACAATCTACGGTAT+TGG 0.479144 1_1:-77438549 Msa0045490:CDS
CAGTAGAAGCAGCTATTTGT+GGG 0.480573 1_1:+77436014 None:intergenic
CTTGGTATGGACAAGGAAAC+GGG 0.485470 1_1:-77436466 Msa0045490:CDS
GCAGTTGAGCAACCAGGTGC+AGG 0.486239 1_1:-77436145 Msa0045490:CDS
ACTTGGTATGGACAAGGAAA+CGG 0.498089 1_1:-77436467 Msa0045490:CDS
ACCAAAGTGTCTTGTTTGGA+AGG 0.502106 1_1:-77436375 Msa0045490:CDS
AGCAGCGGCCAAACGAGCAT+TGG 0.504558 1_1:-77436760 Msa0045490:CDS
GCTACGAAAGTTTATGTTGG+AGG 0.506031 1_1:-77437197 Msa0045490:CDS
AACGAGGAAATTGGAAATGA+GGG 0.508780 1_1:-77438926 Msa0045490:CDS
ACTCAATCCAATGAAGATGA+TGG 0.516122 1_1:-77438956 Msa0045490:CDS
CCGATTTACTCCAGAAATGA+AGG 0.517469 1_1:-77436587 Msa0045490:CDS
AAACGAGGAAATTGGAAATG+AGG 0.518572 1_1:-77438927 Msa0045490:CDS
TACTGCACTTTGAAGCATGC+AGG 0.519924 1_1:-77435996 Msa0045490:exon
AGAGGAAATGCCACAATCTA+CGG 0.521392 1_1:-77438555 Msa0045490:CDS
GCCTTCCAAACAAGACACTT+TGG 0.522248 1_1:+77436374 None:intergenic
ATATCGTTCCGCCATGAAGA+CGG 0.522923 1_1:-77435948 Msa0045490:three_prime_UTR
TTGGATTGAGTTTGTTGCAA+AGG 0.528061 1_1:+77438968 None:intergenic
CTTGTCCATACCAAGTCGTA+TGG 0.528600 1_1:+77436474 None:intergenic
AAAGGCCATACGACTTGGTA+TGG 0.529863 1_1:-77436479 Msa0045490:CDS
GCAGTAGAAGCAGCTATTTG+TGG 0.531101 1_1:+77436013 None:intergenic
CATGCAATTAATTTCAGTGA+TGG 0.534530 1_1:+77437118 None:intergenic
GGATATAATAGAATATATGT+TGG 0.535480 1_1:-77436562 Msa0045490:CDS
CCTGACACTGGCAAGTTTAG+GGG 0.542201 1_1:-77437089 Msa0045490:CDS
GAGTTTGAAGAAGAAGAAGG+TGG 0.543166 1_1:+77439064 None:intergenic
GTTGCTACGAAAGTTTATGT+TGG 0.543964 1_1:-77437200 Msa0045490:CDS
AACAAAATCAAAGCTTTGGT+AGG 0.544766 1_1:+77435723 None:intergenic
GAACTTGGTTGCTCAACAGT+TGG 0.545048 1_1:+77436115 None:intergenic
ACTGAAGACAGCACTTGCAT+TGG 0.546883 1_1:-77436398 Msa0045490:CDS
AGACAAAATGGGTTTGTTGG+TGG 0.554333 1_1:+77439018 None:intergenic
GCAGGTTCTAAACCAGGTGC+AGG 0.555413 1_1:-77436289 Msa0045490:CDS
CAACCAAGTTCTGTTGCAAG+TGG 0.556840 1_1:-77436103 Msa0045490:CDS
ACCGCACAACTTATCCTGAC+AGG 0.558651 1_1:+77436352 None:intergenic
AACTGCAGAGGAAAATGGTA+AGG 0.561255 1_1:-77438612 Msa0045490:CDS
TCATCCTCACTTGAATAGTA+GGG 0.561329 1_1:+77437170 None:intergenic
TCATTTGCAGTTGAGCAACC+AGG 0.564422 1_1:-77436151 Msa0045490:CDS
AATGTAAAGGCCATACGACT+TGG 0.565382 1_1:-77436484 Msa0045490:CDS
CTGACACTGGCAAGTTTAGG+GGG 0.568128 1_1:-77437088 Msa0045490:CDS
TATATGTTGGAAGTCTGTCA+TGG 0.574488 1_1:-77436549 Msa0045490:CDS
AAATAACAGAGGAAGAACTA+AGG 0.575629 1_1:-77436525 Msa0045490:CDS
AAGGAAACGGGAGAATTTCG+AGG 0.577973 1_1:-77436454 Msa0045490:CDS
CCAGTTGCAGGTTCTAAACC+AGG 0.578088 1_1:-77436295 Msa0045490:CDS
AGGAAGAATAGAATGTGCTA+CGG 0.579726 1_1:-77436076 Msa0045490:CDS
TGAAAATGGTGTGGCTAATG+GGG 0.585256 1_1:-77438795 Msa0045490:CDS
TGATGATGATGTGGCTAATG+GGG 0.585907 1_1:-77438759 Msa0045490:CDS
GTTCTGTTGCAAGTGGAAAG+AGG 0.588009 1_1:-77436096 Msa0045490:CDS
AAAGAAGAACAAAACTGCAG+AGG 0.588575 1_1:-77438624 Msa0045490:CDS
CTAACACTACTACCACTACA+AGG 0.592037 1_1:-77438526 Msa0045490:intron
TGATGATAGTGTTGCTAATG+GGG 0.592050 1_1:-77438723 Msa0045490:CDS
ATATGTTGGAAGTCTGTCAT+GGG 0.601270 1_1:-77436548 Msa0045490:CDS
GGAAGAATAGAATGTGCTAC+GGG 0.605374 1_1:-77436075 Msa0045490:CDS
GAAGAAGAATGAAAATGGTG+TGG 0.615435 1_1:-77438804 Msa0045490:CDS
AAATAGGACAGTATCTGTAG+TGG 0.615605 1_1:-77435896 Msa0045490:three_prime_UTR
GTTGAGCAACCAGGTGCAGG+AGG 0.622181 1_1:-77436142 Msa0045490:CDS
ATAGATAAATCACCTTGTAG+TGG 0.629770 1_1:+77438514 None:intergenic
GAATGATTCTAATCATCAAG+AGG 0.630329 1_1:-77438573 Msa0045490:CDS
TTAGCCAATACCGTAGATTG+TGG 0.631628 1_1:+77438545 None:intergenic
CATACGACTTGGTATGGACA+AGG 0.655913 1_1:-77436473 Msa0045490:CDS
TTTACTCCAGAAATGAAGGA+GGG 0.658643 1_1:-77436583 Msa0045490:CDS
GCCTGTCAGGATAAGTTGTG+CGG 0.659328 1_1:-77436353 Msa0045490:CDS
ATTTACTCCAGAAATGAAGG+AGG 0.660456 1_1:-77436584 Msa0045490:CDS
GAAGAAGAGTGATGATGATG+TGG 0.667326 1_1:-77438768 Msa0045490:CDS
TGGTAAGGCCAAAATTGCAG+AGG 0.668394 1_1:-77438597 Msa0045490:CDS
AGGAAACGGGAGAATTTCGA+GGG 0.671275 1_1:-77436453 Msa0045490:CDS
AATTCCCTACTATTCAAGTG+AGG 0.689712 1_1:-77437174 Msa0045490:CDS
TCTGTCATGGGAAATAACAG+AGG 0.691463 1_1:-77436536 Msa0045490:CDS
CTTCCTGCAGACTGAAGCAG+CGG 0.704303 1_1:-77436775 Msa0045490:intron
CAATCAAGCCGTCTTCATGG+CGG 0.743839 1_1:+77435940 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTGAAAAAAACAAAAT+AGG - chr1_1:77438955-77438974 Msa0045490:CDS 10.0%
!!! TTTTTTTTTCTTACTTATGA+AGG - chr1_1:77436385-77436404 Msa0045490:CDS 15.0%
!!! ATTTTTATTTAATGTGTGTT+TGG - chr1_1:77436468-77436487 Msa0045490:CDS 15.0%
!!! ATTGATTTTGAATGAATTTA+TGG - chr1_1:77436507-77436526 Msa0045490:CDS 15.0%
!! ATCAATATTAAGTATATGTT+TGG + chr1_1:77436669-77436688 None:intergenic 15.0%
!! AGATAATCAATTAAAAAACT+GGG + chr1_1:77437611-77437630 None:intergenic 15.0%
!! TAAAACATTTAATGTTAACA+GGG - chr1_1:77438211-77438230 Msa0045490:intron 15.0%
!!! TTTATTGATTTATTCACAAA+TGG - chr1_1:77439090-77439109 Msa0045490:CDS 15.0%
!! CTATTAATTCACATAAAAAT+TGG + chr1_1:77439118-77439137 None:intergenic 15.0%
!! TGCAAAAAAATCAATGAAAA+AGG - chr1_1:77436183-77436202 Msa0045490:CDS 20.0%
!!! AATCAATGATACTTTAAAAG+TGG - chr1_1:77436641-77436660 Msa0045490:intron 20.0%
!!! TTAATATTGATTTTGTGTGA+AGG - chr1_1:77436678-77436697 Msa0045490:intron 20.0%
!! CAATAATAGAATGATAAATG+AGG - chr1_1:77436768-77436787 Msa0045490:CDS 20.0%
!! AATTACTCTTTCAAAAAATG+TGG - chr1_1:77437284-77437303 Msa0045490:intron 20.0%
!!! GTTTCAATTAAAGTTTTTCT+AGG + chr1_1:77437442-77437461 None:intergenic 20.0%
!! TGATATATGATAGAACATTA+TGG - chr1_1:77437507-77437526 Msa0045490:intron 20.0%
!! ACAATAATAACAACAATCAA+GGG + chr1_1:77437556-77437575 None:intergenic 20.0%
!! AACAATAATAACAACAATCA+AGG + chr1_1:77437557-77437576 None:intergenic 20.0%
!! CAGATAATCAATTAAAAAAC+TGG + chr1_1:77437612-77437631 None:intergenic 20.0%
!!! CATTTTTAGCTTTATTTTGT+TGG - chr1_1:77437840-77437859 Msa0045490:intron 20.0%
!! GTAAAACATTTAATGTTAAC+AGG - chr1_1:77438210-77438229 Msa0045490:intron 20.0%
!! AAAACATTTAATGTTAACAG+GGG - chr1_1:77438212-77438231 Msa0045490:intron 20.0%
!! GGATATAATAGAATATATGT+TGG - chr1_1:77438305-77438324 Msa0045490:intron 20.0%
!! GAAAAAAAATGACAACAATA+TGG + chr1_1:77439004-77439023 None:intergenic 20.0%
!! TTTATATCAAAGACTGAAAA+GGG + chr1_1:77439026-77439045 None:intergenic 20.0%
!! TATAAAGCAAGAAAAAATGT+AGG - chr1_1:77439040-77439059 Msa0045490:CDS 20.0%
!! ATAAAGCAAGAAAAAATGTA+GGG - chr1_1:77439041-77439060 Msa0045490:CDS 20.0%
! AGATGAATCAATTGAAAAGA+AGG - chr1_1:77436015-77436034 Msa0045490:CDS 25.0%
! AAGAAGAAGAAGAATGAAAA+TGG - chr1_1:77436058-77436077 Msa0045490:CDS 25.0%
! AAATGTCTCAAACAATGTAA+TGG - chr1_1:77436441-77436460 Msa0045490:CDS 25.0%
! TGACTAAAATTCAATTGTAG+AGG - chr1_1:77436571-77436590 Msa0045490:CDS 25.0%
! ATGAAAATATTGTAGAGAGT+TGG - chr1_1:77436842-77436861 Msa0045490:intron 25.0%
! TGAAAATATTGTAGAGAGTT+GGG - chr1_1:77436843-77436862 Msa0045490:intron 25.0%
! CATGTAGATTCTATATAGTA+AGG - chr1_1:77436933-77436952 Msa0045490:intron 25.0%
! TATATGATAGAACATTATGG+CGG - chr1_1:77437510-77437529 Msa0045490:intron 25.0%
!!! GATTGCCATAATTAGTTTTA+AGG - chr1_1:77437801-77437820 Msa0045490:intron 25.0%
!!! CATAATTAGTTTTAAGGTGA+GGG - chr1_1:77437807-77437826 Msa0045490:intron 25.0%
! CTATACTAGCAATACATTAT+AGG - chr1_1:77437944-77437963 Msa0045490:intron 25.0%
! GAAAATAATATATGAACCGA+TGG + chr1_1:77437977-77437996 None:intergenic 25.0%
!!! AATCGATTTTTGGAATTGTA+AGG + chr1_1:77438026-77438045 None:intergenic 25.0%
!!! CCATAATAAGAATCGATTTT+TGG + chr1_1:77438036-77438055 None:intergenic 25.0%
!! CCAAAAATCGATTCTTATTA+TGG - chr1_1:77438033-77438052 Msa0045490:intron 25.0%
! CTTTATATCAAAGACTGAAA+AGG + chr1_1:77439027-77439046 None:intergenic 25.0%
! TAAAGCAAGAAAAAATGTAG+GGG - chr1_1:77439042-77439061 Msa0045490:CDS 25.0%
! ATTTCCAATTTCCTCGTTTT+TGG + chr1_1:77435939-77435958 None:intergenic 30.0%
GAAAGAAGAAGAACAAAAAG+AGG - chr1_1:77435969-77435988 Msa0045490:three_prime_UTR 30.0%
GAACAAAAAGAGGAAAATGA+AGG - chr1_1:77435979-77435998 Msa0045490:three_prime_UTR 30.0%
! AATGATGATAGTGTTGCTAA+TGG - chr1_1:77436142-77436161 Msa0045490:CDS 30.0%
! ATGATGATAGTGTTGCTAAT+GGG - chr1_1:77436143-77436162 Msa0045490:CDS 30.0%
GAATGATTCTAATCATCAAG+AGG - chr1_1:77436294-77436313 Msa0045490:CDS 30.0%
ATAGATAAATCACCTTGTAG+TGG + chr1_1:77436356-77436375 None:intergenic 30.0%
GAAAATATTGTAGAGAGTTG+GGG - chr1_1:77436844-77436863 Msa0045490:intron 30.0%
! CTTACCATCTTTTCTACAAT+AGG + chr1_1:77436875-77436894 None:intergenic 30.0%
AGAAAAGATGGTAAGAAACT+CGG - chr1_1:77436880-77436899 Msa0045490:intron 30.0%
AAGAAATAGATGACATTGAG+AGG - chr1_1:77437021-77437040 Msa0045490:intron 30.0%
AGAAATAGATGACATTGAGA+GGG - chr1_1:77437022-77437041 Msa0045490:intron 30.0%
! AATTTAAAACCCTCCTCATT+TGG - chr1_1:77437127-77437146 Msa0045490:CDS 30.0%
! ATTTAAAACCCTCCTCATTT+GGG - chr1_1:77437128-77437147 Msa0045490:CDS 30.0%
GAACTCAAAAATTGTATTGG+AGG - chr1_1:77437152-77437171 Msa0045490:CDS 30.0%
TCAAAAATTGTATTGGAGGA+GGG - chr1_1:77437156-77437175 Msa0045490:CDS 30.0%
TAATAACAACAATCAAGGGT+CGG + chr1_1:77437552-77437571 None:intergenic 30.0%
!!! GACATTCACAGTTATTTTGA+AGG - chr1_1:77437718-77437737 Msa0045490:intron 30.0%
CATGCAATTAATTTCAGTGA+TGG + chr1_1:77437752-77437771 None:intergenic 30.0%
CCTCACCTTAAAACTAATTA+TGG + chr1_1:77437809-77437828 None:intergenic 30.0%
!!! CCATAATTAGTTTTAAGGTG+AGG - chr1_1:77437806-77437825 Msa0045490:intron 30.0%
! TCTTTTTGTGCTTCCTTATA+TGG - chr1_1:77437894-77437913 Msa0045490:intron 30.0%
CATTATAGGTCTATTTCCAT+CGG - chr1_1:77437958-77437977 Msa0045490:intron 30.0%
AAATAACAGAGGAAGAACTA+AGG - chr1_1:77438342-77438361 Msa0045490:intron 30.0%
CTTCTCAAATTGCAATGTAA+AGG - chr1_1:77438370-77438389 Msa0045490:intron 30.0%
! AACTGCAAATGATTTTTCAC+CGG + chr1_1:77438708-77438727 None:intergenic 30.0%
AAAGCAAGAAAAAATGTAGG+GGG - chr1_1:77439043-77439062 Msa0045490:CDS 30.0%
! TTCAGCGTTAATCTGGTTTA+GGG + chr1_1:77435777-77435796 None:intergenic 35.0%
! ATTCAGCGTTAATCTGGTTT+AGG + chr1_1:77435778-77435797 None:intergenic 35.0%
GATTAGATTCAGCGTTAATC+TGG + chr1_1:77435784-77435803 None:intergenic 35.0%
AGAGAGTTTGAAGAAGAAGA+AGG + chr1_1:77435809-77435828 None:intergenic 35.0%
! CTTAGACAAAATGGGTTTGT+TGG + chr1_1:77435855-77435874 None:intergenic 35.0%
! TTTTCGCGCTTAGACAAAAT+GGG + chr1_1:77435863-77435882 None:intergenic 35.0%
! TTTTTCGCGCTTAGACAAAA+TGG + chr1_1:77435864-77435883 None:intergenic 35.0%
!! TTGGATTGAGTTTGTTGCAA+AGG + chr1_1:77435902-77435921 None:intergenic 35.0%
ACTCAATCCAATGAAGATGA+TGG - chr1_1:77435911-77435930 Msa0045490:three_prime_UTR 35.0%
! TTTGGTTCCATCATCTTCAT+TGG + chr1_1:77435921-77435940 None:intergenic 35.0%
AAACGAGGAAATTGGAAATG+AGG - chr1_1:77435940-77435959 Msa0045490:three_prime_UTR 35.0%
AACGAGGAAATTGGAAATGA+GGG - chr1_1:77435941-77435960 Msa0045490:three_prime_UTR 35.0%
GAAATTGGAAATGAGGGTTT+CGG - chr1_1:77435947-77435966 Msa0045490:three_prime_UTR 35.0%
GAAGAAGAATGAAAATGGTG+TGG - chr1_1:77436063-77436082 Msa0045490:CDS 35.0%
AATGAAAATGGTGTGGCTAA+TGG - chr1_1:77436070-77436089 Msa0045490:CDS 35.0%
ATGAAAATGGTGTGGCTAAT+GGG - chr1_1:77436071-77436090 Msa0045490:CDS 35.0%
! TGATGATAGTGTTGCTAATG+GGG - chr1_1:77436144-77436163 Msa0045490:CDS 35.0%
! TAATGGGGTTGTTGTTGTTA+AGG - chr1_1:77436159-77436178 Msa0045490:CDS 35.0%
AAAGAAGAACAAAACTGCAG+AGG - chr1_1:77436243-77436262 Msa0045490:CDS 35.0%
AACAAAACTGCAGAGGAAAA+TGG - chr1_1:77436250-77436269 Msa0045490:CDS 35.0%
! ATCATTCTCCTCTGCAATTT+TGG + chr1_1:77436281-77436300 None:intergenic 35.0%
GTCTCAAACAATGTAATGGT+TGG - chr1_1:77436445-77436464 Msa0045490:CDS 35.0%
!! TTAATGTGTGTTTGGTGCTA+TGG - chr1_1:77436476-77436495 Msa0045490:CDS 35.0%
CAAGTTTGAATCAATTCTGG+AGG - chr1_1:77436615-77436634 Msa0045490:CDS 35.0%
AGCACCTATTGTAGAAAAGA+TGG - chr1_1:77436868-77436887 Msa0045490:intron 35.0%
AGGGGTTTGTAAAAAAAGGA+AGG - chr1_1:77436989-77437008 Msa0045490:intron 35.0%
GAAATAGATGACATTGAGAG+GGG - chr1_1:77437023-77437042 Msa0045490:intron 35.0%
AATTCAAAACCCTCCTCATT+TGG - chr1_1:77437074-77437093 Msa0045490:CDS 35.0%
ATTCAAAACCCTCCTCATTT+GGG - chr1_1:77437075-77437094 Msa0045490:CDS 35.0%
! TTTAAAACCCTCCTCATTTG+GGG - chr1_1:77437129-77437148 Msa0045490:CDS 35.0%
GGGGAACTCAAAAATTGTAT+TGG - chr1_1:77437149-77437168 Msa0045490:CDS 35.0%
CTCAAAAATTGTATTGGAGG+AGG - chr1_1:77437155-77437174 Msa0045490:CDS 35.0%
TCATCTGATTTACTTCCCTT+AGG + chr1_1:77437388-77437407 None:intergenic 35.0%
TAGAGATTAATGAGCTGGAT+AGG - chr1_1:77437480-77437499 Msa0045490:intron 35.0%
AGAGATTAATGAGCTGGATA+GGG - chr1_1:77437481-77437500 Msa0045490:intron 35.0%
TGTTCATGCAGTCAAGAAAA+TGG - chr1_1:77437640-77437659 Msa0045490:intron 35.0%
GTTGCTACGAAAGTTTATGT+TGG - chr1_1:77437667-77437686 Msa0045490:intron 35.0%
AATTCCCTACTATTCAAGTG+AGG - chr1_1:77437693-77437712 Msa0045490:intron 35.0%
TCATCCTCACTTGAATAGTA+GGG + chr1_1:77437700-77437719 None:intergenic 35.0%
TTTGTGCTTCCTTATATGGT+AGG - chr1_1:77437898-77437917 Msa0045490:intron 35.0%
GCAATCAATCCTACCATATA+AGG + chr1_1:77437910-77437929 None:intergenic 35.0%
ATTGATTGCAATGTTTCAGC+AGG - chr1_1:77437921-77437940 Msa0045490:intron 35.0%
ACATTTAATGTTAACAGGGG+AGG - chr1_1:77438215-77438234 Msa0045490:intron 35.0%
!! CTTCATTTCTGGAGTAAATC+GGG + chr1_1:77438282-77438301 None:intergenic 35.0%
!! CCTTCATTTCTGGAGTAAAT+CGG + chr1_1:77438283-77438302 None:intergenic 35.0%
ATTTACTCCAGAAATGAAGG+AGG - chr1_1:77438283-77438302 Msa0045490:intron 35.0%
TTTACTCCAGAAATGAAGGA+GGG - chr1_1:77438284-77438303 Msa0045490:intron 35.0%
TTATATCCCTCCTTCATTTC+TGG + chr1_1:77438293-77438312 None:intergenic 35.0%
TATATGTTGGAAGTCTGTCA+TGG - chr1_1:77438318-77438337 Msa0045490:intron 35.0%
ATATGTTGGAAGTCTGTCAT+GGG - chr1_1:77438319-77438338 Msa0045490:intron 35.0%
!!! GCAACTGGTTTTTTGTTCAA+AGG + chr1_1:77438542-77438561 None:intergenic 35.0%
TTGAACAAAAAACCAGTTGC+AGG - chr1_1:77438542-77438561 Msa0045490:CDS 35.0%
AGGAAGAATAGAATGTGCTA+CGG - chr1_1:77438791-77438810 Msa0045490:CDS 35.0%
AAATAGGACAGTATCTGTAG+TGG - chr1_1:77438971-77438990 Msa0045490:CDS 35.0%
GAGTTTGAAGAAGAAGAAGG+TGG + chr1_1:77435806-77435825 None:intergenic 40.0%
!! AGACAAAATGGGTTTGTTGG+TGG + chr1_1:77435852-77435871 None:intergenic 40.0%
!! AGATGATGGAACCAAAAACG+AGG - chr1_1:77435925-77435944 Msa0045490:three_prime_UTR 40.0%
GGAACCAAAAACGAGGAAAT+TGG - chr1_1:77435932-77435951 Msa0045490:three_prime_UTR 40.0%
TGAAAATGGTGTGGCTAATG+GGG - chr1_1:77436072-77436091 Msa0045490:CDS 40.0%
! GAAGAAGAGTGATGATGATG+TGG - chr1_1:77436099-77436118 Msa0045490:CDS 40.0%
! AGTGATGATGATGTGGCTAA+TGG - chr1_1:77436106-77436125 Msa0045490:CDS 40.0%
! GTGATGATGATGTGGCTAAT+GGG - chr1_1:77436107-77436126 Msa0045490:CDS 40.0%
! TGATGATGATGTGGCTAATG+GGG - chr1_1:77436108-77436127 Msa0045490:CDS 40.0%
AACTGCAGAGGAAAATGGTA+AGG - chr1_1:77436255-77436274 Msa0045490:CDS 40.0%
AGAGGAAATGCCACAATCTA+CGG - chr1_1:77436312-77436331 Msa0045490:CDS 40.0%
AATGCCACAATCTACGGTAT+TGG - chr1_1:77436318-77436337 Msa0045490:CDS 40.0%
TTAGCCAATACCGTAGATTG+TGG + chr1_1:77436325-77436344 None:intergenic 40.0%
CTAACACTACTACCACTACA+AGG - chr1_1:77436341-77436360 Msa0045490:CDS 40.0%
GCGCAAGTTTGAATCAATTC+TGG - chr1_1:77436612-77436631 Msa0045490:CDS 40.0%
TGATAAATGAGGATGTGCGT+TGG - chr1_1:77436779-77436798 Msa0045490:intron 40.0%
!! TAAGGCTTTGTTTGCGAGTT+TGG - chr1_1:77436951-77436970 Msa0045490:intron 40.0%
TTCAAAACCCTCCTCATTTG+GGG - chr1_1:77437076-77437095 Msa0045490:CDS 40.0%
TTAAAACCCTCCTCATTTGG+GGG - chr1_1:77437130-77437149 Msa0045490:CDS 40.0%
!!! TTTTTGAGTTCCCCCAAATG+AGG + chr1_1:77437143-77437162 None:intergenic 40.0%
! ATTGTATTGGAGGAGGGTTT+TGG - chr1_1:77437162-77437181 Msa0045490:CDS 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG + chr1_1:77437370-77437389 None:intergenic 40.0%
AAACTCCCAAACAAAGCCTA+AGG - chr1_1:77437369-77437388 Msa0045490:intron 40.0%
AACTCCCAAACAAAGCCTAA+GGG - chr1_1:77437370-77437389 Msa0045490:intron 40.0%
!! ACTTCCCTTAGGCTTTGTTT+GGG + chr1_1:77437377-77437396 None:intergenic 40.0%
!! TACTTCCCTTAGGCTTTGTT+TGG + chr1_1:77437378-77437397 None:intergenic 40.0%
GAGACTAGAGATTAATGAGC+TGG - chr1_1:77437475-77437494 Msa0045490:intron 40.0%
GCTACGAAAGTTTATGTTGG+AGG - chr1_1:77437670-77437689 Msa0045490:intron 40.0%
GTCATCCTCACTTGAATAGT+AGG + chr1_1:77437701-77437720 None:intergenic 40.0%
!!! CACAGTTATTTTGAAGGCTG+TGG - chr1_1:77437724-77437743 Msa0045490:intron 40.0%
! GTTGCTTGAGTTGCTTTACA+TGG + chr1_1:77438260-77438279 None:intergenic 40.0%
CCGATTTACTCCAGAAATGA+AGG - chr1_1:77438280-77438299 Msa0045490:intron 40.0%
TCTGTCATGGGAAATAACAG+AGG - chr1_1:77438331-77438350 Msa0045490:intron 40.0%
AATGTAAAGGCCATACGACT+TGG - chr1_1:77438383-77438402 Msa0045490:intron 40.0%
ACTTGGTATGGACAAGGAAA+CGG - chr1_1:77438400-77438419 Msa0045490:intron 40.0%
! TTGGACCAAAGTGTCTTGTT+TGG - chr1_1:77438488-77438507 Msa0045490:intron 40.0%
!! ACCAAAGTGTCTTGTTTGGA+AGG - chr1_1:77438492-77438511 Msa0045490:intron 40.0%
! TTTAGAACCTGCAACTGGTT+TGG + chr1_1:77438570-77438589 None:intergenic 40.0%
TCAGTTGCAGTTGAAAAACC+AGG - chr1_1:77438608-77438627 Msa0045490:CDS 40.0%
!! ATTGATTTTTCACCTGCACC+TGG + chr1_1:77438629-77438648 None:intergenic 40.0%
TCAGTTGCTGGTGAAAAATC+AGG - chr1_1:77438680-77438699 Msa0045490:CDS 40.0%
TTTCCACTTGCAACAGAACT+TGG + chr1_1:77438770-77438789 None:intergenic 40.0%
GGAAGAATAGAATGTGCTAC+GGG - chr1_1:77438792-77438811 Msa0045490:CDS 40.0%
AAGCAGCTATTTGTGGGTTT+GGG + chr1_1:77438850-77438869 None:intergenic 40.0%
CAGTAGAAGCAGCTATTTGT+GGG + chr1_1:77438856-77438875 None:intergenic 40.0%
GTTGCAAAGGTCGAAGCTTT+CGG + chr1_1:77435889-77435908 None:intergenic 45.0%
TGGTAAGGCCAAAATTGCAG+AGG - chr1_1:77436270-77436289 Msa0045490:CDS 45.0%
GATGGTAAGAAACTCGGCTT+AGG - chr1_1:77436886-77436905 Msa0045490:intron 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG - chr1_1:77436955-77436974 Msa0045490:intron 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG - chr1_1:77436956-77436975 Msa0045490:intron 45.0%
GGGGAGGGGTTTGTAAAAAA+AGG - chr1_1:77436985-77437004 Msa0045490:intron 45.0%
TAGATGACATTGAGAGGGGA+AGG - chr1_1:77437027-77437046 Msa0045490:intron 45.0%
TCAAAACCCTCCTCATTTGG+GGG - chr1_1:77437077-77437096 Msa0045490:CDS 45.0%
!!! TATTGGAGGAGGGTTTTGGA+GGG - chr1_1:77437166-77437185 Msa0045490:CDS 45.0%
TCTGGAGGGTTGGGAATATA+GGG + chr1_1:77437327-77437346 None:intergenic 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG + chr1_1:77437365-77437384 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr1_1:77437366-77437385 None:intergenic 45.0%
GAGAGTAGTCAAACCACTAG+AGG - chr1_1:77437406-77437425 Msa0045490:intron 45.0%
! TGCATGACTTTTCCTGACAC+TGG - chr1_1:77437766-77437785 Msa0045490:intron 45.0%
TTCCTGACACTGGCAAGTTT+AGG - chr1_1:77437776-77437795 Msa0045490:intron 45.0%
TCCTGACACTGGCAAGTTTA+GGG - chr1_1:77437777-77437796 Msa0045490:intron 45.0%
!! ACAACTTGCTGACGTTTCTG+TGG - chr1_1:77438065-77438084 Msa0045490:intron 45.0%
ATCAAGAGCCAATGCTCGTT+TGG + chr1_1:77438118-77438137 None:intergenic 45.0%
!! AAACGAGCATTGGCTCTTGA+TGG - chr1_1:77438117-77438136 Msa0045490:intron 45.0%
!! AAAGGCCATACGACTTGGTA+TGG - chr1_1:77438388-77438407 Msa0045490:intron 45.0%
CTTGTCCATACCAAGTCGTA+TGG + chr1_1:77438396-77438415 None:intergenic 45.0%
!! CATACGACTTGGTATGGACA+AGG - chr1_1:77438394-77438413 Msa0045490:intron 45.0%
CTTGGTATGGACAAGGAAAC+GGG - chr1_1:77438401-77438420 Msa0045490:intron 45.0%
AAGGAAACGGGAGAATTTCG+AGG - chr1_1:77438413-77438432 Msa0045490:intron 45.0%
AGGAAACGGGAGAATTTCGA+GGG - chr1_1:77438414-77438433 Msa0045490:intron 45.0%
ACTGAAGACAGCACTTGCAT+TGG - chr1_1:77438469-77438488 Msa0045490:intron 45.0%
GCCTTCCAAACAAGACACTT+TGG + chr1_1:77438496-77438515 None:intergenic 45.0%
!! ACTGATTTTTCACCTGCACC+TGG + chr1_1:77438593-77438612 None:intergenic 45.0%
!! ACTGATTTTTCAGCTGCAGC+TGG + chr1_1:77438665-77438684 None:intergenic 45.0%
GCAGCTGAAAAATCAGTTGC+TGG - chr1_1:77438668-77438687 Msa0045490:CDS 45.0%
TCATTTGCAGTTGAGCAACC+AGG - chr1_1:77438716-77438735 Msa0045490:CDS 45.0%
GAACTTGGTTGCTCAACAGT+TGG + chr1_1:77438755-77438774 None:intergenic 45.0%
CAACCAAGTTCTGTTGCAAG+TGG - chr1_1:77438764-77438783 Msa0045490:CDS 45.0%
GTTCTGTTGCAAGTGGAAAG+AGG - chr1_1:77438771-77438790 Msa0045490:CDS 45.0%
GAAGCAGCTATTTGTGGGTT+TGG + chr1_1:77438851-77438870 None:intergenic 45.0%
GCAGTAGAAGCAGCTATTTG+TGG + chr1_1:77438857-77438876 None:intergenic 45.0%
!! TACTGCACTTTGAAGCATGC+AGG - chr1_1:77438871-77438890 Msa0045490:CDS 45.0%
ATATCGTTCCGCCATGAAGA+CGG - chr1_1:77438919-77438938 Msa0045490:CDS 45.0%
ACACAATCAAGCCGTCTTCA+TGG + chr1_1:77438933-77438952 None:intergenic 45.0%
GGTAAGAAACTCGGCTTAGG+TGG - chr1_1:77436889-77436908 Msa0045490:intron 50.0%
GAAACTCGGCTTAGGTGGTT+TGG - chr1_1:77436894-77436913 Msa0045490:intron 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG - chr1_1:77436954-77436973 Msa0045490:intron 50.0%
TTTGCGAGTTTGGAGGGGAA+GGG - chr1_1:77436961-77436980 Msa0045490:intron 50.0%
ACATTGAGAGGGGAAGGCTT+TGG - chr1_1:77437033-77437052 Msa0045490:intron 50.0%
CATTGAGAGGGGAAGGCTTT+GGG - chr1_1:77437034-77437053 Msa0045490:intron 50.0%
ATTGAGAGGGGAAGGCTTTG+GGG - chr1_1:77437035-77437054 Msa0045490:intron 50.0%
CAAAACCCTCCTCATTTGGG+GGG - chr1_1:77437078-77437097 Msa0045490:CDS 50.0%
AAAACCCTCCTCATTTGGGG+GGG - chr1_1:77437079-77437098 Msa0045490:CDS 50.0%
TGAGTTCCCCCAAATGAGGA+GGG + chr1_1:77437139-77437158 None:intergenic 50.0%
TTGAGTTCCCCCAAATGAGG+AGG + chr1_1:77437140-77437159 None:intergenic 50.0%
!! GTATTGGAGGAGGGTTTTGG+AGG - chr1_1:77437165-77437184 Msa0045490:CDS 50.0%
CTGGAGGGTTGGGAATATAG+GGG + chr1_1:77437326-77437345 None:intergenic 50.0%
! CTCTGGAGGGTTGGGAATAT+AGG + chr1_1:77437328-77437347 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr1_1:77437367-77437386 None:intergenic 50.0%
AGTCAAACCACTAGAGGCAG+AGG - chr1_1:77437412-77437431 Msa0045490:intron 50.0%
ACAATCAAGGGTCGGCTACA+TGG + chr1_1:77437544-77437563 None:intergenic 50.0%
CCTGACACTGGCAAGTTTAG+GGG - chr1_1:77437778-77437797 Msa0045490:intron 50.0%
CTGACACTGGCAAGTTTAGG+GGG - chr1_1:77437779-77437798 Msa0045490:intron 50.0%
! TCTTGTTTGGAAGGCCTGTC+AGG - chr1_1:77438501-77438520 Msa0045490:intron 50.0%
GCCTGTCAGGATAAGTTGTG+CGG - chr1_1:77438514-77438533 Msa0045490:intron 50.0%
ACCGCACAACTTATCCTGAC+AGG + chr1_1:77438518-77438537 None:intergenic 50.0%
!! ACTGGTTTGGAACCTGCAAC+TGG + chr1_1:77438557-77438576 None:intergenic 50.0%
! CCTGGTTTAGAACCTGCAAC+TGG + chr1_1:77438575-77438594 None:intergenic 50.0%
!! CCAGTTGCAGGTTCTAAACC+AGG - chr1_1:77438572-77438591 Msa0045490:CDS 50.0%
GCAGTTGAAAAACCAGGTGC+AGG - chr1_1:77438614-77438633 Msa0045490:CDS 50.0%
GCTGGTGAAAAATCAGGTGC+CGG - chr1_1:77438686-77438705 Msa0045490:CDS 50.0%
! TGCTACGGGTGTCGTCAAAA+AGG - chr1_1:77438806-77438825 Msa0045490:CDS 50.0%
CAATCAAGCCGTCTTCATGG+CGG + chr1_1:77438930-77438949 None:intergenic 50.0%
GAGGATGTGCGTTGGATGTG+TGG - chr1_1:77436787-77436806 Msa0045490:intron 55.0%
GTTTGCGAGTTTGGAGGGGA+AGG - chr1_1:77436960-77436979 Msa0045490:intron 55.0%
AAACCCTCCTCATTTGGGGG+GGG - chr1_1:77437080-77437099 Msa0045490:CDS 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG + chr1_1:77437360-77437379 None:intergenic 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG + chr1_1:77437361-77437380 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG + chr1_1:77437362-77437381 None:intergenic 55.0%
AGGTCTTCCTCTGCCTCTAG+TGG + chr1_1:77437422-77437441 None:intergenic 55.0%
CCCCTAAACTTGCCAGTGTC+AGG + chr1_1:77437781-77437800 None:intergenic 55.0%
CTTCCTGCAGACTGAAGCAG+CGG - chr1_1:77438092-77438111 Msa0045490:intron 55.0%
GCAGGTTCCAAACCAGTTGC+AGG - chr1_1:77438560-77438579 Msa0045490:CDS 55.0%
!! GCAGGTTCTAAACCAGGTGC+AGG - chr1_1:77438578-77438597 Msa0045490:CDS 55.0%
!!! GTTGGTTTTCCTCCTGCACC+TGG + chr1_1:77438737-77438756 None:intergenic 55.0%
CGAGTTTGGAGGGGAAGGGA+GGG - chr1_1:77436965-77436984 Msa0045490:intron 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG - chr1_1:77436966-77436985 Msa0045490:intron 60.0%
AAGCCCCCCCCAAATGAGGA+GGG + chr1_1:77437086-77437105 None:intergenic 60.0%
AAAGCCCCCCCCAAATGAGG+AGG + chr1_1:77437087-77437106 None:intergenic 60.0%
TCCTCATTTGGGGGGGGCTT+TGG - chr1_1:77437086-77437105 Msa0045490:CDS 60.0%
CCTCATTTGGGGGGGGCTTT+GGG - chr1_1:77437087-77437106 Msa0045490:CDS 60.0%
CTCATTTGGGGGGGGCTTTG+GGG - chr1_1:77437088-77437107 Msa0045490:CDS 60.0%
!! AGGGAAGGCTCTGGAGGGTT+GGG + chr1_1:77437336-77437355 None:intergenic 60.0%
!! AAGGGAAGGCTCTGGAGGGT+TGG + chr1_1:77437337-77437356 None:intergenic 60.0%
GAGTTTGGAGGGGAGGGGAA+GGG + chr1_1:77437355-77437374 None:intergenic 60.0%
AGCAGCGGCCAAACGAGCAT+TGG - chr1_1:77438107-77438126 Msa0045490:intron 60.0%
GCAGTTGAGCAACCAGGTGC+AGG - chr1_1:77438722-77438741 Msa0045490:CDS 60.0%
GTTGAGCAACCAGGTGCAGG+AGG - chr1_1:77438725-77438744 Msa0045490:CDS 60.0%
GCGAGTTTGGAGGGGAAGGG+AGG - chr1_1:77436964-77436983 Msa0045490:intron 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG - chr1_1:77436969-77436988 Msa0045490:intron 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG - chr1_1:77436970-77436989 Msa0045490:intron 65.0%
CCCAAAGCCCCCCCCAAATG+AGG + chr1_1:77437090-77437109 None:intergenic 65.0%
!! GGGGAAGGGAAGGCTCTGGA+GGG + chr1_1:77437341-77437360 None:intergenic 65.0%
! AGGGGAAGGGAAGGCTCTGG+AGG + chr1_1:77437342-77437361 None:intergenic 65.0%
TTGGAGGGGAGGGGAAGGGA+AGG + chr1_1:77437351-77437370 None:intergenic 65.0%
GGAGTTTGGAGGGGAGGGGA+AGG + chr1_1:77437356-77437375 None:intergenic 65.0%
TGGCCGCTGCTTCAGTCTGC+AGG + chr1_1:77438098-77438117 None:intergenic 65.0%
TGGAGGGGAAGGGAGGGGAG+GGG - chr1_1:77436971-77436990 Msa0045490:intron 70.0%
GGGAGGGGAAGGGAAGGCTC+TGG + chr1_1:77437345-77437364 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 77435725 77439164 77435725 ID=Msa0045490;Name=Msa0045490
chr1_1 mRNA 77435725 77439164 77435725 ID=Msa0045490-mRNA-1;Parent=Msa0045490;Name=Msa0045490-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.75|1|1|1|4|281|502
chr1_1 exon 77435725 77436657 77435725 ID=Msa0045490-mRNA-1:exon:26458;Parent=Msa0045490-mRNA-1
chr1_1 exon 77436741 77436787 77436741 ID=Msa0045490-mRNA-1:exon:26457;Parent=Msa0045490-mRNA-1
chr1_1 exon 77437067 77437238 77437067 ID=Msa0045490-mRNA-1:exon:26456;Parent=Msa0045490-mRNA-1
chr1_1 exon 77438527 77439164 77438527 ID=Msa0045490-mRNA-1:exon:26455;Parent=Msa0045490-mRNA-1
chr1_1 CDS 77438527 77439164 77438527 ID=Msa0045490-mRNA-1:cds;Parent=Msa0045490-mRNA-1
chr1_1 CDS 77437067 77437238 77437067 ID=Msa0045490-mRNA-1:cds;Parent=Msa0045490-mRNA-1
chr1_1 CDS 77436741 77436787 77436741 ID=Msa0045490-mRNA-1:cds;Parent=Msa0045490-mRNA-1
chr1_1 CDS 77436006 77436657 77436006 ID=Msa0045490-mRNA-1:cds;Parent=Msa0045490-mRNA-1
chr1_1 three_prime_UTR 77435725 77436005 77435725 ID=Msa0045490-mRNA-1:three_prime_utr;Parent=Msa0045490-mRNA-1
Gene Sequence

>Msa0045490

ATGGTTCTATCAAACAAAAAGCTTAAACAGAAGCTTAGAGCTGAATTAACCCTAAACCAGATTAACGCTGAATCTAATCCACCTTCTTCTTCTTCAAACTCTCTTAAACTTCTTATTAACTCTTCCACCAACAAACCCATTTTGTCTAAGCGCGAAAAACTCCGAAAGCTTCGACCTTTGCAACAAACTCAATCCAATGAAGATGATGGAACCAAAAACGAGGAAATTGGAAATGAGGGTTTCGGAAAGAAGAAGAACAAAAAGAGGAAAATGAAGGTAGAAGAGAAAGAAGATGAATCAATTGAAAAGAAGGAGAAGCAAAATAAGAAGAAGAAGAAGAAGAAGAATGAAAATGGTGTGGCTAATGGGGTTGTGAAGAAGAGTGATGATGATGTGGCTAATGGGGTTGTGAAGAAGAATGATGATAGTGTTGCTAATGGGGTTGTTGTTGTTAAGGATGCAAAAAAATCAATGAAAAAGGAGAAGCAAAAGAAGAAGAATCAATTGAAGAAGAAGAGAAAGAAGAACAAAACTGCAGAGGAAAATGGTAAGGCCAAAATTGCAGAGGAGAATGATTCTAATCATCAAGAGGAAATGCCACAATCTACGGTATTGGCTAACACTACTACCACTACAAGTCAAGAAAATGGTGATGTTGCTACGAAAGTTTATGTTGGAGGAATTCCCTACTATTCAAGTGAGGATGACATTCACAGTTATTTTGAAGGCTGTGGCACCATCACTGAAATTAATTGCATGACTTTTCCTGACACTGGCAAGTTTAGGGGGATTGCCATAATTAGTTTTAAGACTGAAGCAGCGGCCAAACGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATTCAACCATGTAAAGCAACTCAAGCAACCCGATTTACTCCAGAAATGAAGGAGGGATATAATAGAATATATGTTGGAAGTCTGTCATGGGAAATAACAGAGGAAGAACTAAGGAAATTCTTCTCAAATTGCAATGTAAAGGCCATACGACTTGGTATGGACAAGGAAACGGGAGAATTTCGAGGGTATGCTCATGTTGATTTCAGTGATAGTCAGTCACTGAAGACAGCACTTGCATTGGACCAAAGTGTCTTGTTTGGAAGGCCTGTCAGGATAAGTTGTGCGGTTCCTTTGAACAAAAAACCAGTTGCAGGTTCCAAACCAGTTGCAGGTTCTAAACCAGGTGCAGGTGAAAAATCAGTTGCAGTTGAAAAACCAGGTGCAGGTGAAAAATCAATCGCAGTTGAAAAACCAGCTGCAGCTGAAAAATCAGTTGCTGGTGAAAAATCAGGTGCCGGTGAAAAATCATTTGCAGTTGAGCAACCAGGTGCAGGAGGAAAACCAACTGTTGAGCAACCAAGTTCTGTTGCAAGTGGAAAGAGGAAGAATAGAATGTGCTACGGGTGTCGTCAAAAAGGACATAATCTCTCAGAATGCCCAAACCCACAAATAGCTGCTTCTACTGCACTTTGA

Protein sequence

>Msa0045490

MVLSNKKLKQKLRAELTLNQINAESNPPSSSSNSLKLLINSSTNKPILSKREKLRKLRPLQQTQSNEDDGTKNEEIGNEGFGKKKNKKRKMKVEEKEDESIEKKEKQNKKKKKKKNENGVANGVVKKSDDDVANGVVKKNDDSVANGVVVVKDAKKSMKKEKQKKKNQLKKKRKKNKTAEENGKAKIAEENDSNHQEEMPQSTVLANTTTTTSQENGDVATKVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPCKATQATRFTPEMKEGYNRIYVGSLSWEITEEELRKFFSNCNVKAIRLGMDKETGEFRGYAHVDFSDSQSLKTALALDQSVLFGRPVRISCAVPLNKKPVAGSKPVAGSKPGAGEKSVAVEKPGAGEKSIAVEKPAAAEKSVAGEKSGAGEKSFAVEQPGAGGKPTVEQPSSVASGKRKNRMCYGCRQKGHNLSECPNPQIAASTAL*