Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558840 | XP_003629722.2 | 97.980 | 99 | 2 | 0 | 2 | 100 | 236 | 334 | 4.22e-61 | 199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558840 | sp|O94683|RRP7_SCHPO | 55.357 | 56 | 25 | 0 | 45 | 100 | 183 | 238 | 1.30e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558840 | G7LIM3 | 97.980 | 99 | 2 | 0 | 2 | 100 | 236 | 334 | 2.02e-61 | 199 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025730 | Msa0558840 | 0.820284 | 7.441254e-53 | -8.615850e-47 |
| Msa0032260 | Msa0558840 | 0.830147 | 3.458614e-55 | -8.615850e-47 |
| Msa0045490 | Msa0558840 | 0.818076 | 2.366696e-52 | -8.615850e-47 |
| Msa0047160 | Msa0558840 | 0.827479 | 1.529472e-54 | -8.615850e-47 |
| Msa0057140 | Msa0558840 | 0.833158 | 6.261333e-56 | -8.615850e-47 |
| Msa0076000 | Msa0558840 | 0.822661 | 2.102635e-53 | -8.615850e-47 |
| Msa0081230 | Msa0558840 | 0.806502 | 7.972696e-50 | -8.615850e-47 |
| Msa0094470 | Msa0558840 | 0.829445 | 5.127393e-55 | -8.615850e-47 |
| Msa0097990 | Msa0558840 | 0.821474 | 3.960001e-53 | -8.615850e-47 |
| Msa0127310 | Msa0558840 | 0.826978 | 2.016402e-54 | -8.615850e-47 |
| Msa0137040 | Msa0558840 | 0.804240 | 2.375726e-49 | -8.615850e-47 |
| Msa0141100 | Msa0558840 | 0.803912 | 2.779965e-49 | -8.615850e-47 |
| Msa0141340 | Msa0558840 | 0.815592 | 8.544301e-52 | -8.615850e-47 |
| Msa0162770 | Msa0558840 | -0.809003 | 2.345345e-50 | -8.615850e-47 |
| Msa0189300 | Msa0558840 | 0.802789 | 4.749704e-49 | -8.615850e-47 |
| Msa0226470 | Msa0558840 | 0.844821 | 5.962097e-59 | -8.615850e-47 |
| Msa0227400 | Msa0558840 | 0.850944 | 1.223771e-60 | -8.615850e-47 |
| Msa0231660 | Msa0558840 | 0.800472 | 1.418485e-48 | -8.615850e-47 |
| Msa0231880 | Msa0558840 | 0.801473 | 8.854964e-49 | -8.615850e-47 |
| Msa0236440 | Msa0558840 | 0.811839 | 5.726716e-51 | -8.615850e-47 |
| Msa0374850 | Msa0558840 | 0.802115 | 6.537415e-49 | -8.615850e-47 |
| Msa0375090 | Msa0558840 | 0.802944 | 4.411898e-49 | -8.615850e-47 |
| Msa0385580 | Msa0558840 | 0.804512 | 2.084415e-49 | -8.615850e-47 |
| Msa0387730 | Msa0558840 | 0.807667 | 4.518379e-50 | -8.615850e-47 |
| Msa0422840 | Msa0558840 | 0.800081 | 1.703599e-48 | -8.615850e-47 |
| Msa0470340 | Msa0558840 | 0.809995 | 1.436118e-50 | -8.615850e-47 |
| Msa0239450 | Msa0558840 | 0.801789 | 7.627955e-49 | -8.615850e-47 |
| Msa0270220 | Msa0558840 | -0.807337 | 5.310792e-50 | -8.615850e-47 |
| Msa0271530 | Msa0558840 | 0.802132 | 6.486631e-49 | -8.615850e-47 |
| Msa0278790 | Msa0558840 | 0.802276 | 6.056816e-49 | -8.615850e-47 |
| Msa0304330 | Msa0558840 | 0.805051 | 1.608959e-49 | -8.615850e-47 |
| Msa0329350 | Msa0558840 | 0.803527 | 3.341774e-49 | -8.615850e-47 |
| Msa0484840 | Msa0558840 | 0.811860 | 5.668694e-51 | -8.615850e-47 |
| Msa0534590 | Msa0558840 | 0.821606 | 3.692772e-53 | -8.615850e-47 |
| Msa0546360 | Msa0558840 | 0.814966 | 1.176735e-51 | -8.615850e-47 |
| Msa0547720 | Msa0558840 | 0.803424 | 3.509136e-49 | -8.615850e-47 |
| Msa0557070 | Msa0558840 | 0.805061 | 1.601152e-49 | -8.615850e-47 |
| Msa0558810 | Msa0558840 | 0.937539 | 2.939354e-98 | -8.615850e-47 |
| Msa0558840 | Msa0568820 | 0.836252 | 1.043570e-56 | -8.615850e-47 |
| Msa0558840 | Msa0590800 | 0.824017 | 1.013736e-53 | -8.615850e-47 |
| Msa0558840 | Msa0600600 | 0.834772 | 2.469792e-56 | -8.615850e-47 |
| Msa0558840 | Msa0619070 | 0.842379 | 2.680501e-58 | -8.615850e-47 |
| Msa0558840 | Msa0631120 | 0.817338 | 3.473683e-52 | -8.615850e-47 |
| Msa0558840 | Msa0638070 | 0.809466 | 1.866026e-50 | -8.615850e-47 |
| Msa0558840 | Msa0641140 | 0.833250 | 5.939143e-56 | -8.615850e-47 |
| Msa0558840 | Msa0650070 | 0.801804 | 7.574094e-49 | -8.615850e-47 |
| Msa0558840 | Msa0656580 | 0.810681 | 1.021317e-50 | -8.615850e-47 |
| Msa0558840 | Msa0669340 | 0.819410 | 1.178481e-52 | -8.615850e-47 |
| Msa0558840 | Msa0682900 | 0.800220 | 1.596186e-48 | -8.615850e-47 |
| Msa0558840 | Msa0684500 | 0.819646 | 1.041381e-52 | -8.615850e-47 |
| Msa0558840 | Msa0691900 | 0.837843 | 4.092564e-57 | -8.615850e-47 |
| Msa0558840 | Msa0694840 | 0.807377 | 5.207093e-50 | -8.615850e-47 |
| Msa0558840 | Msa0698060 | 0.831343 | 1.761982e-55 | -8.615850e-47 |
| Msa0558840 | Msa0700860 | 0.822155 | 2.756151e-53 | -8.615850e-47 |
| Msa0558840 | Msa0700920 | 0.830298 | 3.176892e-55 | -8.615850e-47 |
| Msa0558840 | Msa0708520 | 0.809411 | 1.917290e-50 | -8.615850e-47 |
| Msa0558840 | Msa0709500 | 0.841927 | 3.530749e-58 | -8.615850e-47 |
| Msa0558840 | Msa0715650 | 0.800860 | 1.182188e-48 | -8.615850e-47 |
| Msa0558840 | Msa0749760 | 0.804760 | 1.850227e-49 | -8.615850e-47 |
| Msa0558840 | Msa0750430 | 0.802583 | 5.237730e-49 | -8.615850e-47 |
| Msa0558840 | Msa0750880 | 0.804133 | 2.500338e-49 | -8.615850e-47 |
| Msa0558840 | Msa0754720 | -0.802063 | 6.701708e-49 | -8.615850e-47 |
| Msa0558840 | Msa0783790 | 0.817963 | 2.511108e-52 | -8.615850e-47 |
| Msa0558840 | Msa0790390 | -0.804451 | 2.146596e-49 | -8.615850e-47 |
| Msa0558840 | Msa0790660 | -0.812460 | 4.191986e-51 | -8.615850e-47 |
| Msa0558840 | Msa0790850 | 0.843597 | 1.270609e-58 | -8.615850e-47 |
| Msa0558840 | Msa0796530 | 0.803341 | 3.650397e-49 | -8.615850e-47 |
| Msa0558840 | Msa0808270 | 0.806884 | 6.620751e-50 | -8.615850e-47 |
| Msa0558840 | Msa0849200 | 0.806020 | 1.007281e-49 | -8.615850e-47 |
| Msa0558840 | Msa0863370 | 0.815025 | 1.141743e-51 | -8.615850e-47 |
| Msa0558840 | Msa0876200 | 0.803375 | 3.592398e-49 | -8.615850e-47 |
| Msa0558840 | Msa0902760 | 0.823840 | 1.115215e-53 | -8.615850e-47 |
| Msa0558840 | Msa0968590 | 0.809103 | 2.232815e-50 | -8.615850e-47 |
| Msa0558840 | Msa0970030 | 0.840794 | 7.015246e-58 | -8.615850e-47 |
| Msa0558840 | Msa0989540 | 0.803956 | 2.721122e-49 | -8.615850e-47 |
| Msa0558840 | Msa1006840 | 0.819052 | 1.421865e-52 | -8.615850e-47 |
| Msa0558840 | Msa1013400 | 0.823364 | 1.441214e-53 | -8.615850e-47 |
| Msa0558840 | Msa1014420 | 0.842667 | 2.248277e-58 | -8.615850e-47 |
| Msa0558840 | Msa1040400 | 0.810024 | 1.415515e-50 | -8.615850e-47 |
| Msa0558840 | Msa1040890 | 0.803092 | 4.111827e-49 | -8.615850e-47 |
| Msa0558840 | Msa1041520 | 0.806130 | 9.550175e-50 | -8.615850e-47 |
| Msa0558840 | Msa1055410 | 0.845252 | 4.559724e-59 | -8.615850e-47 |
| Msa0558840 | Msa1081150 | 0.811782 | 5.892467e-51 | -8.615850e-47 |
| Msa0558840 | Msa1081560 | 0.809846 | 1.546092e-50 | -8.615850e-47 |
| Msa0558840 | Msa1084470 | 0.806975 | 6.336106e-50 | -8.615850e-47 |
| Msa0558840 | Msa1093330 | 0.819581 | 1.077411e-52 | -8.615850e-47 |
| Msa0558840 | Msa1093530 | 0.820135 | 8.047485e-53 | -8.615850e-47 |
| Msa0558840 | Msa1104140 | 0.809651 | 1.703398e-50 | -8.615850e-47 |
| Msa0558840 | Msa1119200 | 0.813575 | 2.388019e-51 | -8.615850e-47 |
| Msa0558840 | Msa1125760 | 0.830166 | 3.421440e-55 | -8.615850e-47 |
| Msa0558840 | Msa1127130 | 0.813752 | 2.183150e-51 | -8.615850e-47 |
| Msa0558840 | Msa1127890 | 0.814409 | 1.563452e-51 | -8.615850e-47 |
| Msa0558840 | Msa1133400 | 0.807898 | 4.035389e-50 | -8.615850e-47 |
| Msa0558840 | Msa1165870 | 0.817010 | 4.116250e-52 | -8.615850e-47 |
| Msa0558840 | Msa1166410 | 0.807586 | 4.700994e-50 | -8.615850e-47 |
| Msa0558840 | Msa1171360 | 0.842800 | 2.071825e-58 | -8.615850e-47 |
| Msa0558840 | Msa1187840 | 0.814546 | 1.457939e-51 | -8.615850e-47 |
| Msa0558840 | Msa1207270 | 0.822867 | 1.882625e-53 | -8.615850e-47 |
| Msa0558840 | Msa1214880 | 0.804018 | 2.641751e-49 | -8.615850e-47 |
| Msa0558840 | Msa1214890 | 0.811552 | 6.614307e-51 | -8.615850e-47 |
| Msa0558840 | Msa1217860 | 0.812806 | 3.521776e-51 | -8.615850e-47 |
| Msa0558840 | Msa1217940 | 0.828460 | 8.883102e-55 | -8.615850e-47 |
| Msa0558840 | Msa1218600 | 0.838591 | 2.625390e-57 | -8.615850e-47 |
| Msa0558840 | Msa1237940 | 0.826864 | 2.146333e-54 | -8.615850e-47 |
| Msa0558840 | Msa1249240 | 0.808986 | 2.364475e-50 | -8.615850e-47 |
| Msa0558840 | Msa1254710 | 0.805358 | 1.387748e-49 | -8.615850e-47 |
| Msa0558840 | Msa1255040 | -0.826125 | 3.220878e-54 | -8.615850e-47 |
| Msa0558840 | Msa1265630 | 0.827506 | 1.506640e-54 | -8.615850e-47 |
| Msa0558840 | Msa1283170 | 0.806538 | 7.836860e-50 | -8.615850e-47 |
| Msa0558840 | Msa1316830 | 0.819651 | 1.038176e-52 | -8.615850e-47 |
| Msa0558840 | Msa1331910 | 0.813564 | 2.401800e-51 | -8.615850e-47 |
| Msa0558840 | Msa1331920 | 0.807964 | 3.907708e-50 | -8.615850e-47 |
| Msa0558840 | Msa1353060 | 0.805139 | 1.541903e-49 | -8.615850e-47 |
| Msa0558840 | Msa1355700 | 0.818165 | 2.260140e-52 | -8.615850e-47 |
| Msa0558840 | Msa1356440 | 0.846340 | 2.310232e-59 | -8.615850e-47 |
| Msa0558840 | Msa1358250 | 0.805139 | 1.541895e-49 | -8.615850e-47 |
| Msa0558840 | Msa1371640 | 0.801972 | 6.996287e-49 | -8.615850e-47 |
| Msa0558840 | Msa1376200 | 0.808175 | 3.523610e-50 | -8.615850e-47 |
| Msa0558840 | Msa1385670 | 0.820954 | 5.218897e-53 | -8.615850e-47 |
| Msa0558840 | Msa1394290 | 0.832453 | 9.374796e-56 | -8.615850e-47 |
| Msa0558840 | Msa1403580 | -0.813252 | 2.812275e-51 | -8.615850e-47 |
| Msa0558840 | Msa1416390 | 0.802295 | 6.003414e-49 | -8.615850e-47 |
| Msa0558840 | Msa1432700 | 0.810028 | 1.412947e-50 | -8.615850e-47 |
| Msa0558840 | Msa1439960 | 0.822886 | 1.863667e-53 | -8.615850e-47 |
| Msa0558840 | Msa1444310 | 0.841604 | 4.296231e-58 | -8.615850e-47 |
| Msa0558840 | Msa1457920 | 0.831031 | 2.101669e-55 | -8.615850e-47 |
| Msa0558840 | Msa1461280 | 0.805338 | 1.400696e-49 | -8.615850e-47 |
| Msa0558840 | Msa1466300 | 0.816950 | 4.246335e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558840 | MtrunA17_Chr8g0378681 | 97.980 | 99 | 2 | 0 | 2 | 100 | 236 | 334 | 3.88e-65 | 199 |
| Msa0558840 | MtrunA17_Chr4g0025631 | 93.939 | 99 | 6 | 0 | 2 | 100 | 279 | 377 | 4.17e-61 | 190 |
| Msa0558840 | MtrunA17_Chr1g0197131 | 83.838 | 99 | 16 | 0 | 2 | 100 | 35 | 133 | 9.44e-55 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0558840 | AT5G38720.1 | 72.000 | 100 | 27 | 1 | 2 | 100 | 207 | 306 | 3.26e-45 | 148 |
| Msa0558840 | AT5G38720.3 | 72.000 | 100 | 27 | 1 | 2 | 100 | 214 | 313 | 3.32e-45 | 148 |
| Msa0558840 | AT5G38720.2 | 72.000 | 100 | 27 | 1 | 2 | 100 | 226 | 325 | 6.56e-45 | 147 |
Find 21 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGCTGCAGAAAATAAAT+TGG | 0.319112 | 4_1:+57853430 | Msa0558840:CDS |
| GCAATCAACATCATTTAATA+AGG | 0.321323 | 4_1:-57854199 | None:intergenic |
| AAAAGAGAAGCTCAGAGAAA+TGG | 0.446445 | 4_1:+57853500 | Msa0558840:CDS |
| TCCATCCTCCTTCTGCAGCA+AGG | 0.468377 | 4_1:-57853331 | None:intergenic |
| AAGTGGGATTGCTGTGGGCT+CGG | 0.474663 | 4_1:+57853400 | Msa0558840:CDS |
| CCATCCTCCTTCTGCAGCAA+GGG | 0.496362 | 4_1:-57853330 | None:intergenic |
| CGCTGAAAGTGGGATTGCTG+TGG | 0.507910 | 4_1:+57853394 | Msa0558840:CDS |
| AAAACTACTGACGCTGAAAG+TGG | 0.530432 | 4_1:+57853383 | Msa0558840:CDS |
| CCCTTGCTGCAGAAGGAGGA+TGG | 0.545811 | 4_1:+57853330 | Msa0558840:CDS |
| GGAACTGCAGAGCAAATTTG+AGG | 0.547063 | 4_1:+57854129 | Msa0558840:CDS |
| AAAGAAGCCCTTGCTGCAGA+AGG | 0.553866 | 4_1:+57853323 | Msa0558840:CDS |
| TGCTGCAGAAGGAGGATGGA+CGG | 0.572937 | 4_1:+57853334 | Msa0558840:CDS |
| GAAGCCCTTGCTGCAGAAGG+AGG | 0.575071 | 4_1:+57853326 | Msa0558840:CDS |
| AAACTACTGACGCTGAAAGT+GGG | 0.579773 | 4_1:+57853384 | Msa0558840:CDS |
| GCTGAAAGTGGGATTGCTGT+GGG | 0.581833 | 4_1:+57853395 | Msa0558840:CDS |
| GACGGTGGTTCAGCACCACA+AGG | 0.611340 | 4_1:+57853352 | Msa0558840:CDS |
| TGGTTCAGCACCACAAGGGT+AGG | 0.619462 | 4_1:+57853357 | Msa0558840:CDS |
| TGCAACAGTTGAGAGCTGCT+AGG | 0.650823 | 4_1:+57854167 | Msa0558840:CDS |
| ACTGCAGAGCAAATTTGAGG+AGG | 0.684181 | 4_1:+57854132 | Msa0558840:CDS |
| TGCAGAAGGAGGATGGACGG+TGG | 0.709610 | 4_1:+57853337 | Msa0558840:CDS |
| ACGGTGGTTCAGCACCACAA+GGG | 0.735362 | 4_1:+57853353 | Msa0558840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAGTTTAAGAAATATTA+GGG | + | chr4_1:57853751-57853770 | Msa0558840:intron | 10.0% |
| !!! | TTTTAGTTTAAGAAATATTA+GGG | + | chr4_1:57853751-57853770 | Msa0558840:intron | 10.0% |
| !!! | CTTTTAGTTTAAGAAATATT+AGG | + | chr4_1:57853750-57853769 | Msa0558840:intron | 15.0% |
| !!! | CTTTTAGTTTAAGAAATATT+AGG | + | chr4_1:57853750-57853769 | Msa0558840:intron | 15.0% |
| !!! | TAAATTTAAACGAACAGTTT+TGG | + | chr4_1:57853631-57853650 | Msa0558840:intron | 20.0% |
| !!! | AACAGTTTTGGTTTAAATAA+TGG | + | chr4_1:57853643-57853662 | Msa0558840:intron | 20.0% |
| !!! | AATAATGGAAGATGTTAATT+AGG | + | chr4_1:57853658-57853677 | Msa0558840:intron | 20.0% |
| !!! | ATAATGGAAGATGTTAATTA+GGG | + | chr4_1:57853659-57853678 | Msa0558840:intron | 20.0% |
| !! | TTAAGAAATATTAGGGTTAT+TGG | + | chr4_1:57853758-57853777 | Msa0558840:intron | 20.0% |
| !!! | AAATTATATGATTTTATGCG+AGG | + | chr4_1:57853970-57853989 | Msa0558840:intron | 20.0% |
| !!! | TAAATTTAAACGAACAGTTT+TGG | + | chr4_1:57853631-57853650 | Msa0558840:intron | 20.0% |
| !!! | AACAGTTTTGGTTTAAATAA+TGG | + | chr4_1:57853643-57853662 | Msa0558840:intron | 20.0% |
| !!! | AATAATGGAAGATGTTAATT+AGG | + | chr4_1:57853658-57853677 | Msa0558840:intron | 20.0% |
| !!! | ATAATGGAAGATGTTAATTA+GGG | + | chr4_1:57853659-57853678 | Msa0558840:intron | 20.0% |
| !! | TTAAGAAATATTAGGGTTAT+TGG | + | chr4_1:57853758-57853777 | Msa0558840:intron | 20.0% |
| !!! | AAATTATATGATTTTATGCG+AGG | + | chr4_1:57853970-57853989 | Msa0558840:intron | 20.0% |
| ! | TCATCTACGATATGAATATA+TGG | - | chr4_1:57853552-57853571 | None:intergenic | 25.0% |
| ! | TAATGGAAGATGTTAATTAG+GGG | + | chr4_1:57853660-57853679 | Msa0558840:intron | 25.0% |
| ! | TCATAGAAACCAAGATATTA+GGG | - | chr4_1:57853843-57853862 | None:intergenic | 25.0% |
| ! | ATCATAGAAACCAAGATATT+AGG | - | chr4_1:57853844-57853863 | None:intergenic | 25.0% |
| !! | TTTTGTGAATCTTAACTTAC+TGG | - | chr4_1:57853881-57853900 | None:intergenic | 25.0% |
| ! | TCATCTACGATATGAATATA+TGG | - | chr4_1:57853552-57853571 | None:intergenic | 25.0% |
| ! | TAATGGAAGATGTTAATTAG+GGG | + | chr4_1:57853660-57853679 | Msa0558840:intron | 25.0% |
| ! | TCATAGAAACCAAGATATTA+GGG | - | chr4_1:57853843-57853862 | None:intergenic | 25.0% |
| ! | ATCATAGAAACCAAGATATT+AGG | - | chr4_1:57853844-57853863 | None:intergenic | 25.0% |
| !! | TTTTGTGAATCTTAACTTAC+TGG | - | chr4_1:57853881-57853900 | None:intergenic | 25.0% |
| !! | AACTCCTGTTTGTTTCTTTT+TGG | - | chr4_1:57853456-57853475 | None:intergenic | 30.0% |
| AAAAAGAAACAAACAGGAGT+TGG | + | chr4_1:57853455-57853474 | Msa0558840:CDS | 30.0% | |
| AATGGAAGATGTTAATTAGG+GGG | + | chr4_1:57853661-57853680 | Msa0558840:intron | 30.0% | |
| ! | CATGCTAATGCAAATTTTGA+TGG | - | chr4_1:57853697-57853716 | None:intergenic | 30.0% |
| ATGATCGTTATCTTGTTGAT+TGG | + | chr4_1:57853937-57853956 | Msa0558840:intron | 30.0% | |
| !! | AACTCCTGTTTGTTTCTTTT+TGG | - | chr4_1:57853456-57853475 | None:intergenic | 30.0% |
| AAAAAGAAACAAACAGGAGT+TGG | + | chr4_1:57853455-57853474 | Msa0558840:CDS | 30.0% | |
| AATGGAAGATGTTAATTAGG+GGG | + | chr4_1:57853661-57853680 | Msa0558840:intron | 30.0% | |
| ! | CATGCTAATGCAAATTTTGA+TGG | - | chr4_1:57853697-57853716 | None:intergenic | 30.0% |
| ATGATCGTTATCTTGTTGAT+TGG | + | chr4_1:57853937-57853956 | Msa0558840:intron | 30.0% | |
| AGCTGCTGCAGAAAATAAAT+TGG | + | chr4_1:57853430-57853449 | Msa0558840:CDS | 35.0% | |
| TTGGCCAAAAAGAAACAAAC+AGG | + | chr4_1:57853449-57853468 | Msa0558840:CDS | 35.0% | |
| !!! | GAGCTTCTCTTTTTTGAAAG+CGG | - | chr4_1:57853493-57853512 | None:intergenic | 35.0% |
| AAAAGAGAAGCTCAGAGAAA+TGG | + | chr4_1:57853500-57853519 | Msa0558840:CDS | 35.0% | |
| ATGGAAGATGTTAATTAGGG+GGG | + | chr4_1:57853662-57853681 | Msa0558840:intron | 35.0% | |
| GAGAAACATCACAGAAGATA+AGG | - | chr4_1:57853816-57853835 | None:intergenic | 35.0% | |
| TTCTCACTTCCCTAATATCT+TGG | + | chr4_1:57853831-57853850 | Msa0558840:intron | 35.0% | |
| ATCTTAACTTACTGGCAGAA+GGG | - | chr4_1:57853873-57853892 | None:intergenic | 35.0% | |
| AATCTTAACTTACTGGCAGA+AGG | - | chr4_1:57853874-57853893 | None:intergenic | 35.0% | |
| AGCTGCTGCAGAAAATAAAT+TGG | + | chr4_1:57853430-57853449 | Msa0558840:CDS | 35.0% | |
| TTGGCCAAAAAGAAACAAAC+AGG | + | chr4_1:57853449-57853468 | Msa0558840:CDS | 35.0% | |
| !!! | GAGCTTCTCTTTTTTGAAAG+CGG | - | chr4_1:57853493-57853512 | None:intergenic | 35.0% |
| AAAAGAGAAGCTCAGAGAAA+TGG | + | chr4_1:57853500-57853519 | Msa0558840:CDS | 35.0% | |
| ATGGAAGATGTTAATTAGGG+GGG | + | chr4_1:57853662-57853681 | Msa0558840:intron | 35.0% | |
| GAGAAACATCACAGAAGATA+AGG | - | chr4_1:57853816-57853835 | None:intergenic | 35.0% | |
| TTCTCACTTCCCTAATATCT+TGG | + | chr4_1:57853831-57853850 | Msa0558840:intron | 35.0% | |
| ATCTTAACTTACTGGCAGAA+GGG | - | chr4_1:57853873-57853892 | None:intergenic | 35.0% | |
| AATCTTAACTTACTGGCAGA+AGG | - | chr4_1:57853874-57853893 | None:intergenic | 35.0% | |
| ! | TAGTTTTCTTCCTACCCTTG+TGG | - | chr4_1:57853370-57853389 | None:intergenic | 40.0% |
| AAAACTACTGACGCTGAAAG+TGG | + | chr4_1:57853383-57853402 | Msa0558840:CDS | 40.0% | |
| AAACTACTGACGCTGAAAGT+GGG | + | chr4_1:57853384-57853403 | Msa0558840:CDS | 40.0% | |
| AAGATGTTAATTAGGGGGGT+TGG | + | chr4_1:57853666-57853685 | Msa0558840:intron | 40.0% | |
| AGATGTTAATTAGGGGGGTT+GGG | + | chr4_1:57853667-57853686 | Msa0558840:intron | 40.0% | |
| GCTGTGTTAGTCATATAAGC+AGG | + | chr4_1:57853782-57853801 | Msa0558840:intron | 40.0% | |
| ! | TGATTTAAGACAGCGTCTAG+GGG | - | chr4_1:57854034-57854053 | None:intergenic | 40.0% |
| ! | CTGATTTAAGACAGCGTCTA+GGG | - | chr4_1:57854035-57854054 | None:intergenic | 40.0% |
| ! | TGTTTTGCTTGCAGAGCTAA+TGG | + | chr4_1:57854108-57854127 | Msa0558840:intron | 40.0% |
| ! | TAGTTTTCTTCCTACCCTTG+TGG | - | chr4_1:57853370-57853389 | None:intergenic | 40.0% |
| AAAACTACTGACGCTGAAAG+TGG | + | chr4_1:57853383-57853402 | Msa0558840:CDS | 40.0% | |
| AAACTACTGACGCTGAAAGT+GGG | + | chr4_1:57853384-57853403 | Msa0558840:CDS | 40.0% | |
| AAGATGTTAATTAGGGGGGT+TGG | + | chr4_1:57853666-57853685 | Msa0558840:intron | 40.0% | |
| AGATGTTAATTAGGGGGGTT+GGG | + | chr4_1:57853667-57853686 | Msa0558840:intron | 40.0% | |
| GCTGTGTTAGTCATATAAGC+AGG | + | chr4_1:57853782-57853801 | Msa0558840:intron | 40.0% | |
| ! | TGATTTAAGACAGCGTCTAG+GGG | - | chr4_1:57854034-57854053 | None:intergenic | 40.0% |
| ! | CTGATTTAAGACAGCGTCTA+GGG | - | chr4_1:57854035-57854054 | None:intergenic | 40.0% |
| ! | TGTTTTGCTTGCAGAGCTAA+TGG | + | chr4_1:57854108-57854127 | Msa0558840:intron | 40.0% |
| GATGTTAATTAGGGGGGTTG+GGG | + | chr4_1:57853668-57853687 | Msa0558840:intron | 45.0% | |
| ATGTTAATTAGGGGGGTTGG+GGG | + | chr4_1:57853669-57853688 | Msa0558840:intron | 45.0% | |
| CGAGGCTCATTCATGCTTTA+CGG | + | chr4_1:57853988-57854007 | Msa0558840:intron | 45.0% | |
| ! | GCTGATTTAAGACAGCGTCT+AGG | - | chr4_1:57854036-57854055 | None:intergenic | 45.0% |
| GGAACTGCAGAGCAAATTTG+AGG | + | chr4_1:57854129-57854148 | Msa0558840:CDS | 45.0% | |
| ACTGCAGAGCAAATTTGAGG+AGG | + | chr4_1:57854132-57854151 | Msa0558840:CDS | 45.0% | |
| GATGTTAATTAGGGGGGTTG+GGG | + | chr4_1:57853668-57853687 | Msa0558840:intron | 45.0% | |
| ATGTTAATTAGGGGGGTTGG+GGG | + | chr4_1:57853669-57853688 | Msa0558840:intron | 45.0% | |
| CGAGGCTCATTCATGCTTTA+CGG | + | chr4_1:57853988-57854007 | Msa0558840:intron | 45.0% | |
| ! | GCTGATTTAAGACAGCGTCT+AGG | - | chr4_1:57854036-57854055 | None:intergenic | 45.0% |
| GGAACTGCAGAGCAAATTTG+AGG | + | chr4_1:57854129-57854148 | Msa0558840:CDS | 45.0% | |
| ACTGCAGAGCAAATTTGAGG+AGG | + | chr4_1:57854132-57854151 | Msa0558840:CDS | 45.0% | |
| !!! | ATAAAATCATATAATTTTTA+AGG | - | chr4_1:57853967-57853986 | None:intergenic | 5.0% |
| !!! | ATAAAATCATATAATTTTTA+AGG | - | chr4_1:57853967-57853986 | None:intergenic | 5.0% |
| AAAGAAGCCCTTGCTGCAGA+AGG | + | chr4_1:57853323-57853342 | Msa0558840:CDS | 50.0% | |
| GCTGAAAGTGGGATTGCTGT+GGG | + | chr4_1:57853395-57853414 | Msa0558840:CDS | 50.0% | |
| TCTAGGGGTGAGGGAAAATG+GGG | - | chr4_1:57854019-57854038 | None:intergenic | 50.0% | |
| GTCTAGGGGTGAGGGAAAAT+GGG | - | chr4_1:57854020-57854039 | None:intergenic | 50.0% | |
| TGCAACAGTTGAGAGCTGCT+AGG | + | chr4_1:57854167-57854186 | Msa0558840:CDS | 50.0% | |
| AAAGAAGCCCTTGCTGCAGA+AGG | + | chr4_1:57853323-57853342 | Msa0558840:CDS | 50.0% | |
| GCTGAAAGTGGGATTGCTGT+GGG | + | chr4_1:57853395-57853414 | Msa0558840:CDS | 50.0% | |
| TCTAGGGGTGAGGGAAAATG+GGG | - | chr4_1:57854019-57854038 | None:intergenic | 50.0% | |
| GTCTAGGGGTGAGGGAAAAT+GGG | - | chr4_1:57854020-57854039 | None:intergenic | 50.0% | |
| TGCAACAGTTGAGAGCTGCT+AGG | + | chr4_1:57854167-57854186 | Msa0558840:CDS | 50.0% | |
| CCATCCTCCTTCTGCAGCAA+GGG | - | chr4_1:57853333-57853352 | None:intergenic | 55.0% | |
| TCCATCCTCCTTCTGCAGCA+AGG | - | chr4_1:57853334-57853353 | None:intergenic | 55.0% | |
| TGCTGCAGAAGGAGGATGGA+CGG | + | chr4_1:57853334-57853353 | Msa0558840:CDS | 55.0% | |
| ACGGTGGTTCAGCACCACAA+GGG | + | chr4_1:57853353-57853372 | Msa0558840:CDS | 55.0% | |
| TGGTTCAGCACCACAAGGGT+AGG | + | chr4_1:57853357-57853376 | Msa0558840:CDS | 55.0% | |
| CGCTGAAAGTGGGATTGCTG+TGG | + | chr4_1:57853394-57853413 | Msa0558840:CDS | 55.0% | |
| AAGTGGGATTGCTGTGGGCT+CGG | + | chr4_1:57853400-57853419 | Msa0558840:CDS | 55.0% | |
| CGTCTAGGGGTGAGGGAAAA+TGG | - | chr4_1:57854021-57854040 | None:intergenic | 55.0% | |
| AAGACAGCGTCTAGGGGTGA+GGG | - | chr4_1:57854028-57854047 | None:intergenic | 55.0% | |
| TAAGACAGCGTCTAGGGGTG+AGG | - | chr4_1:57854029-57854048 | None:intergenic | 55.0% | |
| CCATCCTCCTTCTGCAGCAA+GGG | - | chr4_1:57853333-57853352 | None:intergenic | 55.0% | |
| TCCATCCTCCTTCTGCAGCA+AGG | - | chr4_1:57853334-57853353 | None:intergenic | 55.0% | |
| TGCTGCAGAAGGAGGATGGA+CGG | + | chr4_1:57853334-57853353 | Msa0558840:CDS | 55.0% | |
| ACGGTGGTTCAGCACCACAA+GGG | + | chr4_1:57853353-57853372 | Msa0558840:CDS | 55.0% | |
| TGGTTCAGCACCACAAGGGT+AGG | + | chr4_1:57853357-57853376 | Msa0558840:CDS | 55.0% | |
| CGCTGAAAGTGGGATTGCTG+TGG | + | chr4_1:57853394-57853413 | Msa0558840:CDS | 55.0% | |
| AAGTGGGATTGCTGTGGGCT+CGG | + | chr4_1:57853400-57853419 | Msa0558840:CDS | 55.0% | |
| CGTCTAGGGGTGAGGGAAAA+TGG | - | chr4_1:57854021-57854040 | None:intergenic | 55.0% | |
| AAGACAGCGTCTAGGGGTGA+GGG | - | chr4_1:57854028-57854047 | None:intergenic | 55.0% | |
| TAAGACAGCGTCTAGGGGTG+AGG | - | chr4_1:57854029-57854048 | None:intergenic | 55.0% | |
| GAAGCCCTTGCTGCAGAAGG+AGG | + | chr4_1:57853326-57853345 | Msa0558840:CDS | 60.0% | |
| CCCTTGCTGCAGAAGGAGGA+TGG | + | chr4_1:57853330-57853349 | Msa0558840:CDS | 60.0% | |
| TGCAGAAGGAGGATGGACGG+TGG | + | chr4_1:57853337-57853356 | Msa0558840:CDS | 60.0% | |
| GACGGTGGTTCAGCACCACA+AGG | + | chr4_1:57853352-57853371 | Msa0558840:CDS | 60.0% | |
| GAAGCCCTTGCTGCAGAAGG+AGG | + | chr4_1:57853326-57853345 | Msa0558840:CDS | 60.0% | |
| CCCTTGCTGCAGAAGGAGGA+TGG | + | chr4_1:57853330-57853349 | Msa0558840:CDS | 60.0% | |
| TGCAGAAGGAGGATGGACGG+TGG | + | chr4_1:57853337-57853356 | Msa0558840:CDS | 60.0% | |
| GACGGTGGTTCAGCACCACA+AGG | + | chr4_1:57853352-57853371 | Msa0558840:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 57853305 | 57854207 | 57853305 | ID=Msa0558840;Name=Msa0558840 |
| chr4_1 | mRNA | 57853305 | 57854207 | 57853305 | ID=Msa0558840-mRNA-1;Parent=Msa0558840;Name=Msa0558840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|100 |
| chr4_1 | exon | 57853305 | 57853521 | 57853305 | ID=Msa0558840-mRNA-1:exon:17536;Parent=Msa0558840-mRNA-1 |
| chr4_1 | exon | 57854122 | 57854207 | 57854122 | ID=Msa0558840-mRNA-1:exon:17537;Parent=Msa0558840-mRNA-1 |
| chr4_1 | CDS | 57853305 | 57853521 | 57853305 | ID=Msa0558840-mRNA-1:cds;Parent=Msa0558840-mRNA-1 |
| chr4_1 | CDS | 57854122 | 57854207 | 57854122 | ID=Msa0558840-mRNA-1:cds;Parent=Msa0558840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
