AlfalfaGEDB | Msa0844280

M. sativa cultivar zhongmu-4 / Msa0844280

KEGG: K04382
GO: GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008104 GO:0008150 GO:0008152 GO:0009657 GO:0009658 GO:0009787 GO:0009788 GO:0009893 GO:0009894 GO:0009896 GO:0009902 GO:0009903 GO:0009966 GO:0009968 GO:0009987 GO:0010565 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019216 GO:0019217 GO:0019222 GO:0019538 GO:0019750 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031998 GO:0032000 GO:0032879 GO:0033036 GO:0034613 GO:0036211 GO:0042578 GO:0042579 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045834 GO:0045923 GO:0046320 GO:0046321 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050994 GO:0050996 GO:0051049 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0070727 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1905957 GO:1905958 GO:2000012
PFAM: PF00149.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0844280	XP_003613484.1	100.000	306	0	0	1	306	1	306	0.0	642

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0844280	sp\|Q9ZSE4\|PP2A_HEVBR	96.405	306	11	0	1	306	1	306	0.0	619

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0844280	G7K710	100.000	306	0	0	1	306	1	306	0.0	642

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000910	Msa0844280	0.843494	1.354103e-58	-8.615850e-47
Msa0002560	Msa0844280	0.824263	8.874027e-54	-8.615850e-47
Msa0003220	Msa0844280	0.811676	6.215045e-51	-8.615850e-47
Msa0003270	Msa0844280	0.811667	6.242546e-51	-8.615850e-47
Msa0008200	Msa0844280	0.823199	1.575376e-53	-8.615850e-47
Msa0010490	Msa0844280	0.833143	6.316518e-56	-8.615850e-47
Msa0010500	Msa0844280	0.823780	1.151848e-53	-8.615850e-47
Msa0010770	Msa0844280	0.831953	1.245944e-55	-8.615850e-47
Msa0012710	Msa0844280	0.816661	4.927938e-52	-8.615850e-47
Msa0016510	Msa0844280	0.802292	6.013136e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0844280	MtrunA17_Chr5g0415261	100.000	306	0	0	1	306	1	306	0.0	642
Msa0844280	MtrunA17_Chr8g0364041	97.386	306	8	0	1	306	1	306	0.0	626
Msa0844280	MtrunA17_Chr8g0378521	80.263	304	60	0	3	306	5	308	0.0	534
Msa0844280	MtrunA17_Chr7g0268381	79.070	301	63	0	6	306	13	313	0.0	522
Msa0844280	MtrunA17_Chr5g0445011	66.118	304	101	2	5	306	2	305	1.21e-152	429
Msa0844280	MtrunA17_Chr1g0165341	55.960	302	132	1	6	306	2	303	6.33e-128	367
Msa0844280	MtrunA17_Chr1g0190121	45.819	299	153	3	4	294	3	300	2.74e-95	285
Msa0844280	MtrunA17_Chr7g0272371	46.154	299	154	3	7	299	10	307	3.65e-95	284
Msa0844280	MtrunA17_Chr5g0436061	46.102	295	152	3	6	294	24	317	3.14e-94	281
Msa0844280	MtrunA17_Chr7g0274931	47.826	276	142	2	20	294	26	300	4.49e-94	281

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0844280	AT1G10430.2	94.771	306	16	0	1	306	1	306	0.0	617
Msa0844280	AT1G10430.1	94.771	306	16	0	1	306	1	306	0.0	617
Msa0844280	AT1G59830.1	94.444	306	17	0	1	306	1	306	0.0	612
Msa0844280	AT1G69960.1	91.803	305	25	0	2	306	3	307	0.0	599
Msa0844280	AT2G42500.1	80.066	301	60	0	6	306	13	313	0.0	526
Msa0844280	AT3G58500.1	78.571	308	64	1	1	306	6	313	0.0	525
Msa0844280	AT1G59830.2	93.281	253	17	0	1	253	1	253	5.63e-180	497
Msa0844280	AT5G55260.1	66.118	304	101	2	5	306	2	305	3.18e-154	434
Msa0844280	AT4G26720.1	65.461	304	103	2	5	306	2	305	1.35e-153	432
Msa0844280	AT2G42500.2	68.771	301	47	1	6	306	13	266	2.83e-153	430

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Find 119 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTCCTGTATGCGATCCA+AGG	0.586881	5_4:-22621291	None:intergenic
AACGTATATCCAGCACCACG+TGG	0.705317	5_4:-22621797	None:intergenic
AAGTGTCCGGTTACGGTTTG+TGG	0.441934	5_4:+22618357	Msa0844280:CDS
AATATGGAAATGCCAATGTC+TGG	0.452706	5_4:+22621079	Msa0844280:CDS
ACAATCTTAAATGAACATGG+TGG	0.729587	5_4:-22622479	None:intergenic
ACCAATAGAATCGACACAAT+TGG	0.466980	5_4:+22622351	Msa0844280:three_prime_UTR
ACCAATTGTGTCGATTCTAT+TGG	0.351694	5_4:-22622352	None:intergenic
ACCCAGACGATCGTTGTGGT+TGG	0.495708	5_4:+22621765	Msa0844280:CDS
ACCGGTGAAGTGTCCGGTTA+CGG	0.359368	5_4:+22618350	Msa0844280:CDS
ACCGTAACCGGACACTTCAC+CGG	0.565155	5_4:-22618351	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGCTGAATTAGATGTATAT+AGG	+	chr5_4:22618628-22618647	Msa0844280:intron	30.0%
TTGGTATTTCTTGGTTTATG+AGG	+	chr5_4:22618666-22618685	Msa0844280:intron	30.0%
AGGTGAATTTGATGCATATA+GGG	+	chr5_4:22618686-22618705	Msa0844280:intron	30.0%
TAATCCATATAACACTGTCA+GGG	-	chr5_4:22619405-22619424	None:intergenic	30.0%
TTAATCCATATAACACTGTC+AGG	-	chr5_4:22619406-22619425	None:intergenic	30.0%
AACCAAGATCTGAAAAAATG+AGG	-	chr5_4:22619567-22619586	None:intergenic	30.0%
TGTGCAACACAATTAAGAAA+CGG	+	chr5_4:22619789-22619808	Msa0844280:intron	30.0%
GAACTTGAAACTTGTATAAG+AGG	+	chr5_4:22619933-22619952	Msa0844280:intron	30.0%
CTTAACAACTTCAATATCTG+AGG	+	chr5_4:22620151-22620170	Msa0844280:intron	30.0%
TGCTAGATTCAGATGTAATA+AGG	+	chr5_4:22620178-22620197	Msa0844280:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	22617975	22622622	22617975	ID=Msa0844280;Name=Msa0844280
chr5_4	mRNA	22617975	22622622	22617975	ID=Msa0844280-mRNA-1;Parent=Msa0844280;Name=Msa0844280-mRNA-1;_AED=0.10;_eAED=0.10;_QI=247\|1\|1\|1\|1\|1\|6\|444\|306
chr5_4	exon	22617975	22618474	22617975	ID=Msa0844280-mRNA-1:exon:9228;Parent=Msa0844280-mRNA-1
chr5_4	exon	22620327	22620441	22620327	ID=Msa0844280-mRNA-1:exon:9229;Parent=Msa0844280-mRNA-1
chr5_4	exon	22621050	22621158	22621050	ID=Msa0844280-mRNA-1:exon:9230;Parent=Msa0844280-mRNA-1
chr5_4	exon	22621233	22621310	22621233	ID=Msa0844280-mRNA-1:exon:9231;Parent=Msa0844280-mRNA-1
chr5_4	exon	22621725	22621916	22621725	ID=Msa0844280-mRNA-1:exon:9232;Parent=Msa0844280-mRNA-1
chr5_4	exon	22622005	22622622	22622005	ID=Msa0844280-mRNA-1:exon:9233;Parent=Msa0844280-mRNA-1
chr5_4	five_prime_UTR	22617975	22618221	22617975	ID=Msa0844280-mRNA-1:five_prime_utr;Parent=Msa0844280-mRNA-1
chr5_4	CDS	22618222	22618474	22618222	ID=Msa0844280-mRNA-1:cds;Parent=Msa0844280-mRNA-1
chr5_4	CDS	22620327	22620441	22620327	ID=Msa0844280-mRNA-1:cds;Parent=Msa0844280-mRNA-1
chr5_4	CDS	22621050	22621158	22621050	ID=Msa0844280-mRNA-1:cds;Parent=Msa0844280-mRNA-1
chr5_4	CDS	22621233	22621310	22621233	ID=Msa0844280-mRNA-1:cds;Parent=Msa0844280-mRNA-1
chr5_4	CDS	22621725	22621916	22621725	ID=Msa0844280-mRNA-1:cds;Parent=Msa0844280-mRNA-1
chr5_4	CDS	22622005	22622178	22622005	ID=Msa0844280-mRNA-1:cds;Parent=Msa0844280-mRNA-1
chr5_4	three_prime_UTR	22622179	22622622	22622179	ID=Msa0844280-mRNA-1:three_prime_utr;Parent=Msa0844280-mRNA-1

Gene Sequence

>Msa0844280

ATGCCGTCACACGCGGATCTGGATCGGCAGATCGAGAGTCTGATGGAGTGCAAGCCTTTACCGGAGGCGGATGTGAAGGCGCTATGCGATCAAGCGAGAGCGATTCTTGTTGAGGAATGGAACGTTCAACCGGTGAAGTGTCCGGTTACGGTTTGTGGTGATATTCATGGTCAATTTTATGATCTGATTGAGCTTTTTCGGATTGGTGGAAATGCTCCGGATACTAATTATCTCTTTATGGGAGATTATGTAGATCGTGGGTACTATTCAGTGGAGACTGTTTCACTTTTGGTGGCACTGAAAGTACGCTATAGAGATAGAATTACAATTCTCAGGGGAAATCATGAGAGCCGTCAAATTACTCAAGTGTATGGTTTCTACGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTGGATAATATCCGCGCCTTGGATCGCATACAGGAGGTTCCGCATGAAGGACCAATGTGTGATCTCTTGTGGTCTGACCCAGACGATCGTTGTGGTTGGGGTATATCTCCACGTGGTGCTGGATATACGTTTGGACAGGATATAGCTGCTCAGTTCAATCACACAAATGGTCTCTCGCTGATATCTAGAGCTCATCAGCTTGTGATGGAAGGATACAATTGGTGCCAGGAGAAGAATGTGGTGACTGTTTTTAGTGCTCCAAATTACTGCTACCGATGTGGGAATATGGCTGCCATTCTGGAAATTGGAGAGAATATGGATCAGAATTTTCTGCAGTTTGATCCAGCTCCAAGGCAAATTGAGCCTGACACTACACGAAAGACACCGGATTATTTTTTGTAA

Protein sequence

>Msa0844280

MPSHADLDRQIESLMECKPLPEADVKALCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL*