AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0844280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0844280 MtrunA17_Chr5g0415261 100.000 306 0 0 1 306 1 306 0.0 642
Msa0844280 MtrunA17_Chr8g0364041 97.386 306 8 0 1 306 1 306 0.0 626
Msa0844280 MtrunA17_Chr8g0378521 80.263 304 60 0 3 306 5 308 0.0 534
Msa0844280 MtrunA17_Chr7g0268381 79.070 301 63 0 6 306 13 313 0.0 522
Msa0844280 MtrunA17_Chr5g0445011 66.118 304 101 2 5 306 2 305 1.21e-152 429
Msa0844280 MtrunA17_Chr1g0165341 55.960 302 132 1 6 306 2 303 6.33e-128 367
Msa0844280 MtrunA17_Chr1g0190121 45.819 299 153 3 4 294 3 300 2.74e-95 285
Msa0844280 MtrunA17_Chr7g0272371 46.154 299 154 3 7 299 10 307 3.65e-95 284
Msa0844280 MtrunA17_Chr5g0436061 46.102 295 152 3 6 294 24 317 3.14e-94 281
Msa0844280 MtrunA17_Chr7g0274931 47.826 276 142 2 20 294 26 300 4.49e-94 281
Msa0844280 MtrunA17_Chr8g0387541 48.679 265 134 2 20 283 27 290 1.59e-93 280
Msa0844280 MtrunA17_Chr1g0186811 48.175 274 140 2 20 292 26 298 1.43e-91 275
Msa0844280 MtrunA17_Chr8g0334361 44.483 290 152 3 7 288 4 292 1.47e-91 274
Msa0844280 MtrunA17_Chr1g0167751 45.804 286 153 2 20 304 26 310 1.95e-91 275
Msa0844280 MtrunA17_Chr4g0025471 39.792 289 160 5 24 298 673 961 5.96e-60 206
Msa0844280 MtrunA17_Chr3g0097231 42.449 245 135 5 50 290 222 464 1.24e-59 197
Msa0844280 MtrunA17_Chr2g0322121 39.932 293 155 8 24 298 668 957 4.57e-58 201
Msa0844280 MtrunA17_Chr2g0330311 37.884 293 170 8 7 290 202 491 1.48e-56 190
Msa0844280 MtrunA17_Chr2g0330331 43.043 230 125 5 49 274 86 313 3.64e-53 177
Msa0844280 MtrunA17_Chr1g0196211 39.106 179 101 4 102 272 2 180 1.84e-35 128
Msa0844280 MtrunA17_Chr8g0369981 32.414 290 141 10 26 262 107 394 1.62e-31 122
Msa0844280 MtrunA17_Chr2g0330011 40.458 131 68 4 17 138 224 353 1.64e-17 82.0
Msa0844280 MtrunA17_Chr1g0196221 47.059 85 39 1 24 102 552 636 3.41e-15 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0844280 AT1G10430.2 94.771 306 16 0 1 306 1 306 0.0 617
Msa0844280 AT1G10430.1 94.771 306 16 0 1 306 1 306 0.0 617
Msa0844280 AT1G59830.1 94.444 306 17 0 1 306 1 306 0.0 612
Msa0844280 AT1G69960.1 91.803 305 25 0 2 306 3 307 0.0 599
Msa0844280 AT2G42500.1 80.066 301 60 0 6 306 13 313 0.0 526
Msa0844280 AT3G58500.1 78.571 308 64 1 1 306 6 313 0.0 525
Msa0844280 AT1G59830.2 93.281 253 17 0 1 253 1 253 5.63e-180 497
Msa0844280 AT5G55260.1 66.118 304 101 2 5 306 2 305 3.18e-154 434
Msa0844280 AT4G26720.1 65.461 304 103 2 5 306 2 305 1.35e-153 432
Msa0844280 AT2G42500.2 68.771 301 47 1 6 306 13 266 2.83e-153 430
Msa0844280 AT5G55260.2 58.261 345 101 3 5 306 2 346 1.01e-145 414
Msa0844280 AT3G19980.1 55.960 302 132 1 6 306 2 303 1.76e-127 366
Msa0844280 AT1G50370.1 55.298 302 134 1 6 306 2 303 2.76e-126 363
Msa0844280 AT2G29400.1 47.253 273 143 1 20 292 43 314 7.42e-96 286
Msa0844280 AT2G39840.1 47.119 295 149 3 6 294 21 314 9.84e-96 286
Msa0844280 AT5G27840.1 47.635 296 148 3 1 290 8 302 1.45e-94 283
Msa0844280 AT5G27840.4 47.635 296 148 3 1 290 8 302 2.32e-94 283
Msa0844280 AT5G27840.2 47.635 296 148 3 1 290 8 302 2.46e-94 282
Msa0844280 AT5G27840.3 47.635 296 148 3 1 290 8 302 2.46e-94 282
Msa0844280 AT3G05580.1 47.586 290 145 3 7 290 14 302 2.45e-93 280
Msa0844280 AT1G64040.1 49.434 265 132 2 20 283 27 290 4.04e-93 279
Msa0844280 AT5G43380.1 46.667 285 143 3 7 283 6 289 3.77e-91 275
Msa0844280 AT5G59160.3 46.350 274 145 2 20 292 36 308 5.54e-91 273
Msa0844280 AT5G59160.2 46.350 274 145 2 20 292 36 308 5.54e-91 273
Msa0844280 AT5G59160.1 46.350 274 145 2 20 292 36 308 5.54e-91 273
Msa0844280 AT5G43380.2 46.667 285 143 3 7 283 6 289 5.79e-91 274
Msa0844280 AT4G11240.1 47.547 265 137 2 20 283 27 290 6.70e-91 273
Msa0844280 AT5G43380.3 46.667 285 143 3 7 283 6 289 7.30e-91 273
Msa0844280 AT3G46820.1 45.620 274 147 2 20 292 36 308 6.35e-89 268
Msa0844280 AT2G42500.4 73.214 168 40 2 1 163 6 173 3.05e-84 251
Msa0844280 AT2G42500.3 75.625 160 34 2 1 155 6 165 5.09e-83 248
Msa0844280 AT2G42500.5 70.857 175 44 3 1 170 6 178 1.24e-82 247
Msa0844280 AT3G05580.2 49.187 246 118 3 1 240 8 252 4.58e-80 243
Msa0844280 AT2G42810.1 42.537 268 144 6 31 290 201 466 1.08e-63 209
Msa0844280 AT2G42810.5 42.537 268 144 6 31 290 201 466 1.08e-63 209
Msa0844280 AT2G42810.4 42.537 268 144 6 31 290 201 466 1.08e-63 209
Msa0844280 AT2G42810.2 42.537 268 144 6 31 290 255 520 4.13e-63 208
Msa0844280 AT2G42810.3 42.537 268 144 6 31 290 254 519 4.45e-63 208
Msa0844280 AT4G03080.1 41.481 270 144 5 24 279 554 823 6.11e-60 205
Msa0844280 AT1G03445.2 41.328 271 142 7 24 279 480 748 1.41e-59 203
Msa0844280 AT1G03445.1 41.328 271 142 7 24 279 480 748 1.69e-59 203
Msa0844280 AT2G27210.2 39.655 290 160 6 24 298 674 963 1.24e-58 202
Msa0844280 AT2G27210.1 39.655 290 160 6 24 298 679 968 1.26e-58 202
Msa0844280 AT1G08420.2 40.741 270 146 5 24 279 685 954 4.40e-58 201
Msa0844280 AT1G08420.1 40.741 270 146 5 24 279 690 959 4.64e-58 201
Msa0844280 AT5G63870.1 32.353 306 142 11 49 291 79 382 1.75e-31 122
Msa0844280 AT5G63870.2 32.353 306 142 11 49 291 79 382 1.75e-31 122
Msa0844280 AT5G63870.3 36.449 214 97 7 49 225 79 290 2.40e-28 111
Msa0844280 AT1G48120.1 32.087 321 148 11 32 283 635 954 1.52e-26 110
Msa0844280 AT5G10900.3 28.514 249 143 9 20 239 191 433 8.31e-19 87.0
Msa0844280 AT5G10900.2 28.514 249 143 9 20 239 191 433 9.42e-19 87.0
Msa0844280 AT5G10900.1 28.514 249 143 9 20 239 191 433 9.71e-19 87.0

Find 119 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATACTAATTATCTCTTTA+TGG 0.113568 5_4:+22618440 Msa0844280:CDS
CTGCTGCTGTCTGTCTTATT+TGG 0.178677 5_4:+22622321 Msa0844280:three_prime_UTR
CCACATCGGTAGCAGTAATT+TGG 0.207567 5_4:-22622035 None:intergenic
TAATGGTTTCTTTATATTAC+TGG 0.239909 5_4:-22618056 None:intergenic
TGCTTAGAAACTCTTGAAAT+AGG 0.240094 5_4:+22622592 Msa0844280:three_prime_UTR
GATGAATGCTTGAGAAAATA+TGG 0.265964 5_4:+22621063 Msa0844280:CDS
AGTGGAGACTGTTTCACTTT+TGG 0.279854 5_4:+22620343 Msa0844280:CDS
ATGGCTGCCATTCTGGAAAT+TGG 0.280680 5_4:+22622062 Msa0844280:CDS
TGGGAATATGGCTGCCATTC+TGG 0.284450 5_4:+22622055 Msa0844280:CDS
ACTCTTGAAATAGGGAATTA+AGG 0.294583 5_4:+22622601 Msa0844280:three_prime_UTR
GATACTAATTATCTCTTTAT+GGG 0.296309 5_4:+22618441 Msa0844280:CDS
CTGCTACCGATGTGGGAATA+TGG 0.319446 5_4:+22622043 Msa0844280:CDS
TGGAGGTCTCTCACCATCTT+TGG 0.327030 5_4:+22621247 Msa0844280:CDS
TCTGGAAATTGGAGAGAATA+TGG 0.342558 5_4:+22622073 Msa0844280:CDS
GACTGCCCTCATTGAGAGTC+AGG 0.351563 5_4:+22621137 Msa0844280:CDS
ACCAATTGTGTCGATTCTAT+TGG 0.351694 5_4:-22622352 None:intergenic
TTCAAGAGTTTCTAAGCAAC+AGG 0.352393 5_4:-22622587 None:intergenic
ACCGGTGAAGTGTCCGGTTA+CGG 0.359368 5_4:+22618350 Msa0844280:CDS
GCTTAGAAACTCTTGAAATA+GGG 0.360687 5_4:+22622593 Msa0844280:three_prime_UTR
CCCAGACGATCGTTGTGGTT+GGG 0.364879 5_4:+22621766 Msa0844280:CDS
GATGGAGTGCAAGCCTTTAC+CGG 0.365829 5_4:+22618263 Msa0844280:CDS
GGCTCAATTTGCCTTGGAGC+TGG 0.369766 5_4:-22622119 None:intergenic
CCCCAACCACAACGATCGTC+TGG 0.379839 5_4:-22621767 None:intergenic
GAGATAGAATTACAATTCTC+AGG 0.380189 5_4:+22620387 Msa0844280:CDS
CATGCCGTCACACGCGGATC+TGG 0.408264 5_4:+22618221 Msa0844280:exon
ACGGTTTGTGGTGATATTCA+TGG 0.413148 5_4:+22618369 Msa0844280:CDS
CTTACACTTGAGTAATTTGA+CGG 0.424338 5_4:-22620424 None:intergenic
AGAAGATGAAGCTGAGGGTT+TGG 0.430837 5_4:-22618128 None:intergenic
TGTTCATTTAAGATTGTGAA+TGG 0.436982 5_4:+22622485 Msa0844280:three_prime_UTR
TTCACATCCGCCTCCGGTAA+AGG 0.440700 5_4:-22618276 None:intergenic
ATATCACCACAAACCGTAAC+CGG 0.441931 5_4:-22618363 None:intergenic
AAGTGTCCGGTTACGGTTTG+TGG 0.441934 5_4:+22618357 Msa0844280:CDS
CCAGACGATCGTTGTGGTTG+GGG 0.450228 5_4:+22621767 Msa0844280:CDS
AATATGGAAATGCCAATGTC+TGG 0.452706 5_4:+22621079 Msa0844280:CDS
CGTGGTGCTGGATATACGTT+TGG 0.454119 5_4:+22621800 Msa0844280:CDS
CATATCATGGGTAGGGTTGG+TGG 0.454444 5_4:+22622562 Msa0844280:three_prime_UTR
ATTATTATGATATCATATCA+TGG 0.459606 5_4:+22622549 Msa0844280:three_prime_UTR
GGTATATCTCCACGTGGTGC+TGG 0.461540 5_4:+22621788 Msa0844280:CDS
AGAAAGAAGTAACTACATAC+AGG 0.463848 5_4:-22622192 None:intergenic
ACCAATAGAATCGACACAAT+TGG 0.466980 5_4:+22622351 Msa0844280:three_prime_UTR
CGTTCAACCGGTGAAGTGTC+CGG 0.468440 5_4:+22618344 Msa0844280:CDS
CCGCGCCTTGGATCGCATAC+AGG 0.472606 5_4:+22621286 Msa0844280:CDS
GATCAGTCGGCGACGGTCGC+CGG 0.478360 5_4:-22618162 None:intergenic
TGAGGAATGGAACGTTCAAC+CGG 0.483631 5_4:+22618332 Msa0844280:CDS
GGTGTCTTTCGTGTAGTGTC+AGG 0.485525 5_4:-22622140 None:intergenic
CTCTTTATGGGAGATTATGT+AGG 0.493968 5_4:+22618453 Msa0844280:CDS
GAGCGATTCTTGTTGAGGAA+TGG 0.495521 5_4:+22618319 Msa0844280:CDS
ACCCAGACGATCGTTGTGGT+TGG 0.495708 5_4:+22621765 Msa0844280:CDS
ATATCATGGGTAGGGTTGGT+GGG 0.496159 5_4:+22622563 Msa0844280:three_prime_UTR
GTGTCAGGCTCAATTTGCCT+TGG 0.498966 5_4:-22622125 None:intergenic
AGCGCCTTCACATCCGCCTC+CGG 0.505019 5_4:-22618282 None:intergenic
GGTAAAGAATTTCCAGACAT+TGG 0.508637 5_4:-22621091 None:intergenic
GAGTTTCACTGTTTAAGTGA+TGG 0.509976 5_4:+22622249 Msa0844280:three_prime_UTR
ATTCTCTCCAATTTCCAGAA+TGG 0.510452 5_4:-22622069 None:intergenic
TCGGATTGGTGGAAATGCTC+CGG 0.512157 5_4:+22618419 Msa0844280:CDS
TCAATATAGGTTCCGCATGA+AGG 0.513509 5_4:+22621716 Msa0844280:intron
TATCATGGGTAGGGTTGGTG+GGG 0.515090 5_4:+22622564 Msa0844280:three_prime_UTR
AGGTAAATAATCAAACAAAT+CGG 0.517054 5_4:-22621112 None:intergenic
ATAAAGAGATAATTAGTATC+CGG 0.517202 5_4:-22618438 None:intergenic
GCTCAGTTCAATCACACAAA+TGG 0.518477 5_4:+22621836 Msa0844280:CDS
CCAAATTACTGCTACCGATG+TGG 0.523948 5_4:+22622035 Msa0844280:CDS
CATCTTCTCCGACGAATCTC+CGG 0.524012 5_4:+22618143 Msa0844280:five_prime_UTR
ACTGGATAATATCCGCGCCT+TGG 0.529586 5_4:+22621274 Msa0844280:CDS
CAAATTACTGCTACCGATGT+GGG 0.532060 5_4:+22622036 Msa0844280:CDS
TTCTTCAGATCCGATGAGAT+CGG 0.533938 5_4:-22618186 None:intergenic
GTGCAAGCCTTTACCGGAGG+CGG 0.534349 5_4:+22618269 Msa0844280:CDS
ATGATATCATATCATGGGTA+GGG 0.536950 5_4:+22622555 Msa0844280:three_prime_UTR
TTGTGAATGGTTACAAGTGC+AGG 0.539078 5_4:+22622498 Msa0844280:three_prime_UTR
CTCACCATCTTTGGATACAC+TGG 0.543454 5_4:+22621256 Msa0844280:CDS
TCGGCAGATCGAGAGTCTGA+TGG 0.543546 5_4:+22618245 Msa0844280:CDS
AGCGAGAGCGATTCTTGTTG+AGG 0.545800 5_4:+22618314 Msa0844280:CDS
TTATCCAGTGTATCCAAAGA+TGG 0.549296 5_4:-22621260 None:intergenic
TATGATATCATATCATGGGT+AGG 0.555001 5_4:+22622554 Msa0844280:three_prime_UTR
TTTACCGGAGGCGGATGTGA+AGG 0.556113 5_4:+22618278 Msa0844280:CDS
CGATCCAGATCCGCGTGTGA+CGG 0.559405 5_4:-22618225 None:intergenic
TTTCACTGTTTAAGTGATGG+AGG 0.561005 5_4:+22622252 Msa0844280:three_prime_UTR
CAGATCCGCGTGTGACGGCA+TGG 0.561837 5_4:-22618220 None:intergenic
TTCACTGTTTAAGTGATGGA+GGG 0.562139 5_4:+22622253 Msa0844280:three_prime_UTR
TGCTGGATATACGTTTGGAC+AGG 0.564091 5_4:+22621805 Msa0844280:CDS
ACCGTAACCGGACACTTCAC+CGG 0.565155 5_4:-22618351 None:intergenic
TATCATATCATGGGTAGGGT+TGG 0.565574 5_4:+22622559 Msa0844280:three_prime_UTR
TAGAGCTCATCAGCTTGTGA+TGG 0.570025 5_4:+22621874 Msa0844280:CDS
CGACTGATCTCCGATCTCAT+CGG 0.572969 5_4:+22618176 Msa0844280:five_prime_UTR
TTATTATGATATCATATCAT+GGG 0.573643 5_4:+22622550 Msa0844280:three_prime_UTR
AGATAGAATTACAATTCTCA+GGG 0.575342 5_4:+22620388 Msa0844280:CDS
CATAAATTTATGCAGATCGT+GGG 0.576093 5_4:+22620312 Msa0844280:intron
GACGGTCGCCGGAGATTCGT+CGG 0.576191 5_4:-22618151 None:intergenic
GACCAATGTGTGATCTCTTG+TGG 0.576863 5_4:+22621738 Msa0844280:CDS
CGTCACACGCGGATCTGGAT+CGG 0.578779 5_4:+22618226 Msa0844280:CDS
CCCAACCACAACGATCGTCT+GGG 0.580244 5_4:-22621766 None:intergenic
GCTCATCAGCTTGTGATGGA+AGG 0.582864 5_4:+22621878 Msa0844280:CDS
TGCAGTTTGATCCAGCTCCA+AGG 0.585413 5_4:+22622108 Msa0844280:CDS
AACCTCCTGTATGCGATCCA+AGG 0.586881 5_4:-22621291 None:intergenic
CGTCGGAGAAGATGAAGCTG+AGG 0.588089 5_4:-22618134 None:intergenic
TTCAAACCTGACTCTCAATG+AGG 0.590959 5_4:-22621143 None:intergenic
AGGAGGAAGCGGCAATAACA+TGG 0.596625 5_4:+22622391 Msa0844280:three_prime_UTR
TTCAACCATGCCGTCACACG+CGG 0.601853 5_4:+22618215 Msa0844280:exon
CGCCTTGGATCGCATACAGG+AGG 0.602261 5_4:+22621289 Msa0844280:CDS
TCAAACCTGACTCTCAATGA+GGG 0.610004 5_4:-22621142 None:intergenic
TTGTGATGGAAGGATACAAT+TGG 0.613571 5_4:+22621888 Msa0844280:CDS
CTCTCAATGAGGGCAGTCAG+AGG 0.620691 5_4:-22621132 None:intergenic
GGAAGGATACAATTGGTGCC+AGG 0.622019 5_4:+22621895 Msa0844280:CDS
CGATGAGATCGGAGATCAGT+CGG 0.627267 5_4:-22618175 None:intergenic
GTCGGAGAAGATGAAGCTGA+GGG 0.640221 5_4:-22618133 None:intergenic
TGACACTACACGAAAGACAC+CGG 0.642789 5_4:+22622142 Msa0844280:CDS
GATCGGAGATCAGTCGGCGA+CGG 0.650816 5_4:-22618169 None:intergenic
TTCACAATCTTAAATGAACA+TGG 0.653210 5_4:-22622482 None:intergenic
GAAAGAAGTAACTACATACA+GGG 0.653211 5_4:-22622191 None:intergenic
TCACACATTGGTCCTTCATG+CGG 0.659593 5_4:-22621728 None:intergenic
GGAGTGCAAGCCTTTACCGG+AGG 0.670902 5_4:+22618266 Msa0844280:CDS
CCTGTATGCGATCCAAGGCG+CGG 0.673253 5_4:-22621286 None:intergenic
TGGCAGCCATATTCCCACAT+CGG 0.677796 5_4:-22622049 None:intergenic
AGATCGTGGGTACTATTCAG+TGG 0.679198 5_4:+22620325 Msa0844280:intron
TCTGACCCAGACGATCGTTG+TGG 0.702404 5_4:+22621761 Msa0844280:CDS
AACGTATATCCAGCACCACG+TGG 0.705317 5_4:-22621797 None:intergenic
GATAGAATTACAATTCTCAG+GGG 0.726280 5_4:+22620389 Msa0844280:CDS
ACAATCTTAAATGAACATGG+TGG 0.729587 5_4:-22622479 None:intergenic
GACCACAAGAGATCACACAT+TGG 0.731997 5_4:-22621740 None:intergenic
GGTTGGGGTATATCTCCACG+TGG 0.804235 5_4:+22621782 Msa0844280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGGTTAATTTGATTTATTTA+GGG + chr5_4:22618525-22618544 Msa0844280:intron 15.0%
!!! TATATATAGTGTTTTGTTTT+CGG + chr5_4:22618583-22618602 Msa0844280:intron 15.0%
!!! TAAGGTTTGATTTTTTATTT+TGG + chr5_4:22618763-22618782 Msa0844280:intron 15.0%
!!! ATAGTTATTTCAGTTTTATA+AGG + chr5_4:22618879-22618898 Msa0844280:intron 15.0%
!! TATTGAGTTTGATATATTAT+TGG + chr5_4:22618914-22618933 Msa0844280:intron 15.0%
!!! TTTGTAGTTTAATTTTGATA+CGG + chr5_4:22619250-22619269 Msa0844280:intron 15.0%
!! CTATAAATTATAACACAATA+CGG - chr5_4:22619515-22619534 None:intergenic 15.0%
!! TTGAATATAAGAAACATAAA+AGG + chr5_4:22620983-22621002 Msa0844280:intron 15.0%
!! TAGTATCAAATAATTTACAT+TGG - chr5_4:22621357-22621376 None:intergenic 15.0%
!! AGAAATGAAATATTAAATGA+GGG - chr5_4:22621629-22621648 None:intergenic 15.0%
!! ATTATTATGATATCATATCA+TGG + chr5_4:22622549-22622568 Msa0844280:three_prime_UTR 15.0%
!! TTATTATGATATCATATCAT+GGG + chr5_4:22622550-22622569 Msa0844280:three_prime_UTR 15.0%
!! TAATGGTTTCTTTATATTAC+TGG - chr5_4:22618059-22618078 None:intergenic 20.0%
!! ATAAAGAGATAATTAGTATC+CGG - chr5_4:22618441-22618460 None:intergenic 20.0%
!! GATACTAATTATCTCTTTAT+GGG + chr5_4:22618441-22618460 Msa0844280:CDS 20.0%
!!! GTGGTTAATTTGATTTATTT+AGG + chr5_4:22618524-22618543 Msa0844280:intron 20.0%
!!! TTTATTTAGGGTTTGATTAT+TGG + chr5_4:22618537-22618556 Msa0844280:intron 20.0%
!!! TAATTGCTTCTTTTATATGT+TGG + chr5_4:22618994-22619013 Msa0844280:intron 20.0%
!!! TTATGATGTTTTCTGAAAAA+TGG + chr5_4:22619041-22619060 Msa0844280:intron 20.0%
!!! TCTAAAATCAAACATATGAT+TGG - chr5_4:22619309-22619328 None:intergenic 20.0%
!!! ACTTGTCTTTTTATTTTTCT+TGG + chr5_4:22619629-22619648 Msa0844280:intron 20.0%
!!! TTCATGTATGATAGAATTTT+TGG + chr5_4:22619691-22619710 Msa0844280:intron 20.0%
!!! TGGATATACATATCATTTTA+TGG + chr5_4:22619722-22619741 Msa0844280:intron 20.0%
!!! GGATATACATATCATTTTAT+GGG + chr5_4:22619723-22619742 Msa0844280:intron 20.0%
!!! TGTTACTGTAATATATTTTG+AGG + chr5_4:22620115-22620134 Msa0844280:intron 20.0%
!!! GTTACTGTAATATATTTTGA+GGG + chr5_4:22620116-22620135 Msa0844280:intron 20.0%
!! AAATTTATGCCAGAATTATT+AGG - chr5_4:22620301-22620320 None:intergenic 20.0%
!! AGGTAAATAATCAAACAAAT+CGG - chr5_4:22621115-22621134 None:intergenic 20.0%
!! TATTAAATGGCTATTATAAC+TGG + chr5_4:22621321-22621340 Msa0844280:intron 20.0%
!!! TGATACTAAGAACATTTTTA+TGG + chr5_4:22621369-22621388 Msa0844280:intron 20.0%
!! CAGAAATGAAATATTAAATG+AGG - chr5_4:22621630-22621649 None:intergenic 20.0%
!!! ACAATTTTGCTTTTCAATAT+AGG + chr5_4:22621703-22621722 Msa0844280:intron 20.0%
!!! GTCTTTTTTATTACTCTTTT+AGG + chr5_4:22621983-22622002 Msa0844280:intron 20.0%
!! TGAAGTTACAAAAAATAATC+CGG - chr5_4:22622164-22622183 None:intergenic 20.0%
!!! ACAACATAATTCTTTCTTTT+TGG + chr5_4:22622285-22622304 Msa0844280:three_prime_UTR 20.0%
!!! TGGTATTGTATATTTTTGAT+AGG + chr5_4:22622371-22622390 Msa0844280:three_prime_UTR 20.0%
!!! TATTGTATATTTTTGATAGG+AGG + chr5_4:22622374-22622393 Msa0844280:three_prime_UTR 20.0%
! GGATACTAATTATCTCTTTA+TGG + chr5_4:22618440-22618459 Msa0844280:CDS 25.0%
! CCACAAGAAAACAAAAAATT+AGG - chr5_4:22618508-22618527 None:intergenic 25.0%
!!! CCTAATTTTTTGTTTTCTTG+TGG + chr5_4:22618505-22618524 Msa0844280:intron 25.0%
!!! GTTTGATTATTGGTTTTATG+AGG + chr5_4:22618547-22618566 Msa0844280:intron 25.0%
! AGCTGAATTAGATGTATATA+GGG + chr5_4:22618629-22618648 Msa0844280:intron 25.0%
!!! TGTATATAGGGTTTGATTTT+TGG + chr5_4:22618641-22618660 Msa0844280:intron 25.0%
!!! TTTTTGGTTTTGGTATTTCT+TGG + chr5_4:22618657-22618676 Msa0844280:intron 25.0%
!! AGGTGAATTTTATGCATATA+AGG + chr5_4:22618745-22618764 Msa0844280:intron 25.0%
! TTGTTCTTGAGATGAATTAT+TGG + chr5_4:22618792-22618811 Msa0844280:intron 25.0%
!! TGTATTTGAGTCTATTTTGT+TGG + chr5_4:22618823-22618842 Msa0844280:intron 25.0%
!!! TTATATGTTGGAGTCTTTTT+TGG + chr5_4:22619006-22619025 Msa0844280:intron 25.0%
! GTTGTATTTGTTTGACTAAT+TGG + chr5_4:22619083-22619102 Msa0844280:intron 25.0%
! ACAATTCTCCTTTAAACAAA+TGG - chr5_4:22619601-22619620 None:intergenic 25.0%
!!! GTATGATAGAATTTTTGGTT+TGG + chr5_4:22619696-22619715 Msa0844280:intron 25.0%
!!! TAGAATTTTTGGTTTGGAAT+TGG + chr5_4:22619702-22619721 Msa0844280:intron 25.0%
! TAAGTTTGAGCTCAAAAAAT+TGG + chr5_4:22619819-22619838 Msa0844280:intron 25.0%
!! CTTGTATAAGAGGATTTTAT+AGG + chr5_4:22619943-22619962 Msa0844280:intron 25.0%
!!! TCAAAGTGTCTATATTTTGA+CGG + chr5_4:22620003-22620022 Msa0844280:intron 25.0%
! AATTAGATTATTTGCATCTG+TGG + chr5_4:22620260-22620279 Msa0844280:intron 25.0%
! ATTAGATTATTTGCATCTGT+GGG + chr5_4:22620261-22620280 Msa0844280:intron 25.0%
! GAATTATTAGGAAATTGTAG+TGG - chr5_4:22620289-22620308 None:intergenic 25.0%
! CTACAATTTCCTAATAATTC+TGG + chr5_4:22620289-22620308 Msa0844280:intron 25.0%
! AGATAGAATTACAATTCTCA+GGG + chr5_4:22620388-22620407 Msa0844280:CDS 25.0%
! CTTGCTTAAAGTTTAAGAAT+AGG + chr5_4:22620526-22620545 Msa0844280:intron 25.0%
! TAAAACACAAACACAATGAA+TGG - chr5_4:22620577-22620596 None:intergenic 25.0%
! TATATCTTTCTCAGTATTCT+GGG + chr5_4:22620710-22620729 Msa0844280:intron 25.0%
!!! AGTGTTTTAGTGAGTTTTTA+AGG + chr5_4:22620746-22620765 Msa0844280:intron 25.0%
!!! ATTTGTTTTCTTACCATTTC+AGG + chr5_4:22621028-22621047 Msa0844280:intron 25.0%
!!! ATAAAAAAGGTGTTAGACAA+TGG - chr5_4:22621208-22621227 None:intergenic 25.0%
! CAGAAAATCTGCAATAAAAA+AGG - chr5_4:22621221-22621240 None:intergenic 25.0%
! ATGAATCAATCTAAGTGTTA+CGG - chr5_4:22621929-22621948 None:intergenic 25.0%
!! ACTTAGATTGATTCATTTCA+AGG + chr5_4:22621933-22621952 Msa0844280:intron 25.0%
!! GATTTGTCTTTAAGAAAAAG+AGG + chr5_4:22622227-22622246 Msa0844280:three_prime_UTR 25.0%
! TTCACAATCTTAAATGAACA+TGG - chr5_4:22622485-22622504 None:intergenic 25.0%
!! TGTTCATTTAAGATTGTGAA+TGG + chr5_4:22622485-22622504 Msa0844280:three_prime_UTR 25.0%
! ATGATCTGATTGAGCTTTTT+CGG + chr5_4:22618400-22618419 Msa0844280:CDS 30.0%
!!! TAGTGTTTTGTTTTCGGTTT+TGG + chr5_4:22618589-22618608 Msa0844280:intron 30.0%
!! TTTTCGGTTTTGGTGATTTT+TGG + chr5_4:22618599-22618618 Msa0844280:intron 30.0%
GAGCTGAATTAGATGTATAT+AGG + chr5_4:22618628-22618647 Msa0844280:intron 30.0%
!!! TAGGGTTTGATTTTTGGTTT+TGG + chr5_4:22618647-22618666 Msa0844280:intron 30.0%
TTGGTATTTCTTGGTTTATG+AGG + chr5_4:22618666-22618685 Msa0844280:intron 30.0%
AGGTGAATTTGATGCATATA+GGG + chr5_4:22618686-22618705 Msa0844280:intron 30.0%
!!! TGGAAATTGCTGTTTTTAGT+TGG + chr5_4:22619061-22619080 Msa0844280:intron 30.0%
TAATCCATATAACACTGTCA+GGG - chr5_4:22619405-22619424 None:intergenic 30.0%
TTAATCCATATAACACTGTC+AGG - chr5_4:22619406-22619425 None:intergenic 30.0%
!!! ATCCTCATTTTTTCAGATCT+TGG + chr5_4:22619562-22619581 Msa0844280:intron 30.0%
AACCAAGATCTGAAAAAATG+AGG - chr5_4:22619567-22619586 None:intergenic 30.0%
!! GTTATGTGCCATTTGTTTAA+AGG + chr5_4:22619590-22619609 Msa0844280:intron 30.0%
TGTGCAACACAATTAAGAAA+CGG + chr5_4:22619789-22619808 Msa0844280:intron 30.0%
!!! ATGTTTTAAGTTTGTGTGAG+TGG + chr5_4:22619880-22619899 Msa0844280:intron 30.0%
GAACTTGAAACTTGTATAAG+AGG + chr5_4:22619933-22619952 Msa0844280:intron 30.0%
!! CTGTAATATATTTTGAGGGA+AGG + chr5_4:22620120-22620139 Msa0844280:intron 30.0%
CTTAACAACTTCAATATCTG+AGG + chr5_4:22620151-22620170 Msa0844280:intron 30.0%
TGCTAGATTCAGATGTAATA+AGG + chr5_4:22620178-22620197 Msa0844280:intron 30.0%
CATAAATTTATGCAGATCGT+GGG + chr5_4:22620312-22620331 Msa0844280:intron 30.0%
GAGATAGAATTACAATTCTC+AGG + chr5_4:22620387-22620406 Msa0844280:CDS 30.0%
GATAGAATTACAATTCTCAG+GGG + chr5_4:22620389-22620408 Msa0844280:CDS 30.0%
CTTACACTTGAGTAATTTGA+CGG - chr5_4:22620427-22620446 None:intergenic 30.0%
AACACAATGAATGGAGTAAT+TGG - chr5_4:22620568-22620587 None:intergenic 30.0%
TTTACATTGAGATAGATGGA+TGG - chr5_4:22620616-22620635 None:intergenic 30.0%
GAACTTTACATTGAGATAGA+TGG - chr5_4:22620620-22620639 None:intergenic 30.0%
TCTCAATGTAAAGTTCAATG+CGG + chr5_4:22620624-22620643 Msa0844280:intron 30.0%
! GATTGCAAAAAATCAAGTTG+CGG - chr5_4:22620667-22620686 None:intergenic 30.0%
CTATATCTTTCTCAGTATTC+TGG + chr5_4:22620709-22620728 Msa0844280:intron 30.0%
TACAAGTGAAACATCATATC+TGG + chr5_4:22620836-22620855 Msa0844280:intron 30.0%
!! TTTTCTTACCATTTCAGGTA+TGG + chr5_4:22621033-22621052 Msa0844280:intron 30.0%
GATGAATGCTTGAGAAAATA+TGG + chr5_4:22621063-22621082 Msa0844280:CDS 30.0%
! GAGGTTTGTGTGTTATTAAA+TGG + chr5_4:22621308-22621327 Msa0844280:intron 30.0%
GGGAAAAAAGATCTTTAACT+TGG - chr5_4:22621405-22621424 None:intergenic 30.0%
!!! ATCTTTTTTCCCCTAAAGTA+TGG + chr5_4:22621413-22621432 Msa0844280:intron 30.0%
ACTTTGCATACCATACTTTA+GGG - chr5_4:22621426-22621445 None:intergenic 30.0%
TACTTTGCATACCATACTTT+AGG - chr5_4:22621427-22621446 None:intergenic 30.0%
! GTTGTCTGCATTTTTCTTTT+TGG + chr5_4:22621533-22621552 Msa0844280:intron 30.0%
TGAATCAATCTAAGTGTTAC+GGG - chr5_4:22621928-22621947 None:intergenic 30.0%
GAAAGAAGTAACTACATACA+GGG - chr5_4:22622194-22622213 None:intergenic 30.0%
AGAAAGAAGTAACTACATAC+AGG - chr5_4:22622195-22622214 None:intergenic 30.0%
!! ATATTTTTGATAGGAGGAAG+CGG + chr5_4:22622380-22622399 Msa0844280:three_prime_UTR 30.0%
ACAATCTTAAATGAACATGG+TGG - chr5_4:22622482-22622501 None:intergenic 30.0%
TATGATATCATATCATGGGT+AGG + chr5_4:22622554-22622573 Msa0844280:three_prime_UTR 30.0%
ATGATATCATATCATGGGTA+GGG + chr5_4:22622555-22622574 Msa0844280:three_prime_UTR 30.0%
TGCTTAGAAACTCTTGAAAT+AGG + chr5_4:22622592-22622611 Msa0844280:three_prime_UTR 30.0%
GCTTAGAAACTCTTGAAATA+GGG + chr5_4:22622593-22622612 Msa0844280:three_prime_UTR 30.0%
!!! ACGATGCGTTTTGAGAATAA+TGG - chr5_4:22618076-22618095 None:intergenic 35.0%
CTCTTTATGGGAGATTATGT+AGG + chr5_4:22618453-22618472 Msa0844280:CDS 35.0%
GAGGTGAATTTGATGCATAT+AGG + chr5_4:22618685-22618704 Msa0844280:intron 35.0%
! TGCATATAGGGTGTGATTTT+TGG + chr5_4:22618698-22618717 Msa0844280:intron 35.0%
!! TGGTGATGTTTGCTTTTATG+AGG + chr5_4:22618725-22618744 Msa0844280:intron 35.0%
!!! GTTGGTTTTTGATGAGTGTT+TGG + chr5_4:22618841-22618860 Msa0844280:intron 35.0%
!!! TTGGTGTTGTGTTCGAATTT+TGG + chr5_4:22618933-22618952 Msa0844280:intron 35.0%
!!! TGTTGGAGTCTTTTTTGGAA+AGG + chr5_4:22619011-22619030 Msa0844280:intron 35.0%
!!! GTTGGAGTCTTTTTTGGAAA+GGG + chr5_4:22619012-22619031 Msa0844280:intron 35.0%
TGATATGTAGTCAGCTAGTT+TGG + chr5_4:22619185-22619204 Msa0844280:intron 35.0%
TTTACCCTGACAGTGTTATA+TGG + chr5_4:22619398-22619417 Msa0844280:intron 35.0%
GAAATGGTCAAGATTTAGTC+AGG - chr5_4:22619489-22619508 None:intergenic 35.0%
TAACACAATACGGACAGAAA+TGG - chr5_4:22619505-22619524 None:intergenic 35.0%
AATCATTCCAACAGAAAAGC+AGG - chr5_4:22619661-22619680 None:intergenic 35.0%
TTCTTAATTGTGTTGCACAC+CGG - chr5_4:22619788-22619807 None:intergenic 35.0%
GTGCAACACAATTAAGAAAC+GGG + chr5_4:22619790-22619809 Msa0844280:intron 35.0%
TGCAACACAATTAAGAAACG+GGG + chr5_4:22619791-22619810 Msa0844280:intron 35.0%
AGTGACATGTGTTTGTATTG+AGG + chr5_4:22620079-22620098 Msa0844280:intron 35.0%
!! TATTTTGAGGGAAGGTTATG+AGG + chr5_4:22620128-22620147 Msa0844280:intron 35.0%
! ATGTAATAAGGTGCCAACTT+TGG + chr5_4:22620190-22620209 Msa0844280:intron 35.0%
AGAATGGTTATAGCCAAAGT+TGG - chr5_4:22620206-22620225 None:intergenic 35.0%
GCATAAATTTATGCAGATCG+TGG + chr5_4:22620311-22620330 Msa0844280:intron 35.0%
! TGTGTTTTACAACTTTCTGC+TGG + chr5_4:22620588-22620607 Msa0844280:intron 35.0%
CTCAATGTAAAGTTCAATGC+GGG + chr5_4:22620625-22620644 Msa0844280:intron 35.0%
TCAATGTAAAGTTCAATGCG+GGG + chr5_4:22620626-22620645 Msa0844280:intron 35.0%
AGAAAGAGTTGTAAAGTGTG+TGG + chr5_4:22620775-22620794 Msa0844280:intron 35.0%
!! AATGGATAGTGGTTTTACCA+AGG + chr5_4:22620800-22620819 Msa0844280:intron 35.0%
!! ATGGATAGTGGTTTTACCAA+GGG + chr5_4:22620801-22620820 Msa0844280:intron 35.0%
TACACAATAGCACATTCACT+CGG - chr5_4:22620875-22620894 None:intergenic 35.0%
AATAACAGATTGGCATTCAC+AGG - chr5_4:22620920-22620939 None:intergenic 35.0%
TGTGAATGCCAATCTGTTAT+TGG + chr5_4:22620919-22620938 Msa0844280:intron 35.0%
! ATGCCAATCTGTTATTGGTT+TGG + chr5_4:22620924-22620943 Msa0844280:intron 35.0%
!! TGCCAATCTGTTATTGGTTT+GGG + chr5_4:22620925-22620944 Msa0844280:intron 35.0%
ATCCCAAACCAATAACAGAT+TGG - chr5_4:22620930-22620949 None:intergenic 35.0%
! GGTTTGGGATGATATGAAAT+TGG + chr5_4:22620940-22620959 Msa0844280:intron 35.0%
AATATGGAAATGCCAATGTC+TGG + chr5_4:22621079-22621098 Msa0844280:CDS 35.0%
GGTAAAGAATTTCCAGACAT+TGG - chr5_4:22621094-22621113 None:intergenic 35.0%
! TTGCAGATTTTCTGTTTGCA+TGG + chr5_4:22621227-22621246 Msa0844280:intron 35.0%
TTATCCAGTGTATCCAAAGA+TGG - chr5_4:22621263-22621282 None:intergenic 35.0%
CTTTGCATACCATACTTTAG+GGG - chr5_4:22621425-22621444 None:intergenic 35.0%
GAAACATGAAACATCCAAAG+AGG - chr5_4:22621607-22621626 None:intergenic 35.0%
! TTGTGATGGAAGGATACAAT+TGG + chr5_4:22621888-22621907 Msa0844280:CDS 35.0%
!! ACTCTTTTAGGAGAAGAATG+TGG + chr5_4:22621995-22622014 Msa0844280:intron 35.0%
ATTCTCTCCAATTTCCAGAA+TGG - chr5_4:22622072-22622091 None:intergenic 35.0%
TCTGGAAATTGGAGAGAATA+TGG + chr5_4:22622073-22622092 Msa0844280:CDS 35.0%
GAGTTTCACTGTTTAAGTGA+TGG + chr5_4:22622249-22622268 Msa0844280:three_prime_UTR 35.0%
TTTCACTGTTTAAGTGATGG+AGG + chr5_4:22622252-22622271 Msa0844280:three_prime_UTR 35.0%
! TTCACTGTTTAAGTGATGGA+GGG + chr5_4:22622253-22622272 Msa0844280:three_prime_UTR 35.0%
ACCAATAGAATCGACACAAT+TGG + chr5_4:22622351-22622370 Msa0844280:three_prime_UTR 35.0%
!! ACCAATTGTGTCGATTCTAT+TGG - chr5_4:22622355-22622374 None:intergenic 35.0%
TTCAAGAGTTTCTAAGCAAC+AGG - chr5_4:22622590-22622609 None:intergenic 35.0%
TTCTTCAGATCCGATGAGAT+CGG - chr5_4:22618189-22618208 None:intergenic 40.0%
ATATCACCACAAACCGTAAC+CGG - chr5_4:22618366-22618385 None:intergenic 40.0%
ACGGTTTGTGGTGATATTCA+TGG + chr5_4:22618369-22618388 Msa0844280:CDS 40.0%
!!! CTGATTGAGCTTTTTCGGAT+TGG + chr5_4:22618405-22618424 Msa0844280:CDS 40.0%
!!! ATTGAGCTTTTTCGGATTGG+TGG + chr5_4:22618408-22618427 Msa0844280:CDS 40.0%
!!! AGGGTGTGATTTTTGGTTCT+TGG + chr5_4:22618705-22618724 Msa0844280:intron 40.0%
ATTCCAACAGAAAAGCAGGA+GGG - chr5_4:22619657-22619676 None:intergenic 40.0%
CCAGTAAGCGAATCAAAGAA+TGG - chr5_4:22620222-22620241 None:intergenic 40.0%
! CCATTCTTTGATTCGCTTAC+TGG + chr5_4:22620219-22620238 Msa0844280:intron 40.0%
! AGTGGAGACTGTTTCACTTT+TGG + chr5_4:22620343-22620362 Msa0844280:CDS 40.0%
CAATGTAAAGTTCAATGCGG+GGG + chr5_4:22620627-22620646 Msa0844280:intron 40.0%
AATGTAAAGTTCAATGCGGG+GGG + chr5_4:22620628-22620647 Msa0844280:intron 40.0%
GTTGTAAAGTGTGTGGTGAA+TGG + chr5_4:22620782-22620801 Msa0844280:intron 40.0%
TTGTGTAGACGTGAATTACG+TGG + chr5_4:22620888-22620907 Msa0844280:intron 40.0%
CGTAGAAACCATACCTGAAA+TGG - chr5_4:22621044-22621063 None:intergenic 40.0%
TCAAACCTGACTCTCAATGA+GGG - chr5_4:22621145-22621164 None:intergenic 40.0%
TTCAAACCTGACTCTCAATG+AGG - chr5_4:22621146-22621165 None:intergenic 40.0%
! CAGATTTTCTGTTTGCATGG+AGG + chr5_4:22621230-22621249 Msa0844280:intron 40.0%
! AACCTCTACGACATGGTTTT+AGG - chr5_4:22621658-22621677 None:intergenic 40.0%
! AAGCAAAATTGTCACTTGCC+AGG - chr5_4:22621695-22621714 None:intergenic 40.0%
TCAATATAGGTTCCGCATGA+AGG + chr5_4:22621716-22621735 Msa0844280:intron 40.0%
GCTCAGTTCAATCACACAAA+TGG + chr5_4:22621836-22621855 Msa0844280:CDS 40.0%
CAAATTACTGCTACCGATGT+GGG + chr5_4:22622036-22622055 Msa0844280:CDS 40.0%
TTGTGAATGGTTACAAGTGC+AGG + chr5_4:22622498-22622517 Msa0844280:three_prime_UTR 40.0%
TATCATATCATGGGTAGGGT+TGG + chr5_4:22622559-22622578 Msa0844280:three_prime_UTR 40.0%
AGAAGATGAAGCTGAGGGTT+TGG - chr5_4:22618131-22618150 None:intergenic 45.0%
GAGCGATTCTTGTTGAGGAA+TGG + chr5_4:22618319-22618338 Msa0844280:CDS 45.0%
TGAGGAATGGAACGTTCAAC+CGG + chr5_4:22618332-22618351 Msa0844280:CDS 45.0%
TTCCAACAGAAAAGCAGGAG+GGG - chr5_4:22619656-22619675 None:intergenic 45.0%
CATTCCAACAGAAAAGCAGG+AGG - chr5_4:22619658-22619677 None:intergenic 45.0%
TGCAGTTACTATCACACCGT+AGG + chr5_4:22619748-22619767 Msa0844280:intron 45.0%
GCAGTTACTATCACACCGTA+GGG + chr5_4:22619749-22619768 Msa0844280:intron 45.0%
CAGTTACTATCACACCGTAG+GGG + chr5_4:22619750-22619769 Msa0844280:intron 45.0%
AGTTACTATCACACCGTAGG+GGG + chr5_4:22619751-22619770 Msa0844280:intron 45.0%
AGATCGTGGGTACTATTCAG+TGG + chr5_4:22620325-22620344 Msa0844280:intron 45.0%
!! GGAGACTGTTTCACTTTTGG+TGG + chr5_4:22620346-22620365 Msa0844280:CDS 45.0%
ATGTAAAGTTCAATGCGGGG+GGG + chr5_4:22620629-22620648 Msa0844280:intron 45.0%
CAGTATTCTGGGTGATGTTC+TGG + chr5_4:22620721-22620740 Msa0844280:intron 45.0%
AGTGTGTGGTGAATGGATAG+TGG + chr5_4:22620789-22620808 Msa0844280:intron 45.0%
TGTTTCACTTGTACGCTCCA+TGG - chr5_4:22620829-22620848 None:intergenic 45.0%
CTCACCATCTTTGGATACAC+TGG + chr5_4:22621256-22621275 Msa0844280:CDS 45.0%
GAGGCATAAAGCACATGGTA+AGG - chr5_4:22621588-22621607 None:intergenic 45.0%
! CCAAAGAGGCATAAAGCACA+TGG - chr5_4:22621593-22621612 None:intergenic 45.0%
CCATGTGCTTTATGCCTCTT+TGG + chr5_4:22621590-22621609 Msa0844280:intron 45.0%
TGCCTAAAACCATGTCGTAG+AGG + chr5_4:22621653-22621672 Msa0844280:intron 45.0%
GGTTGACTGGATATATTGCC+TGG + chr5_4:22621674-22621693 Msa0844280:intron 45.0%
TCACACATTGGTCCTTCATG+CGG - chr5_4:22621731-22621750 None:intergenic 45.0%
GACCAATGTGTGATCTCTTG+TGG + chr5_4:22621738-22621757 Msa0844280:CDS 45.0%
GACCACAAGAGATCACACAT+TGG - chr5_4:22621743-22621762 None:intergenic 45.0%
TGCTGGATATACGTTTGGAC+AGG + chr5_4:22621805-22621824 Msa0844280:CDS 45.0%
TAGAGCTCATCAGCTTGTGA+TGG + chr5_4:22621874-22621893 Msa0844280:CDS 45.0%
CCACATCGGTAGCAGTAATT+TGG - chr5_4:22622038-22622057 None:intergenic 45.0%
CCAAATTACTGCTACCGATG+TGG + chr5_4:22622035-22622054 Msa0844280:CDS 45.0%
! ATGGCTGCCATTCTGGAAAT+TGG + chr5_4:22622062-22622081 Msa0844280:CDS 45.0%
TGACACTACACGAAAGACAC+CGG + chr5_4:22622142-22622161 Msa0844280:CDS 45.0%
! CTGCTGCTGTCTGTCTTATT+TGG + chr5_4:22622321-22622340 Msa0844280:three_prime_UTR 45.0%
! ATATCATGGGTAGGGTTGGT+GGG + chr5_4:22622563-22622582 Msa0844280:three_prime_UTR 45.0%
GTCGGAGAAGATGAAGCTGA+GGG - chr5_4:22618136-22618155 None:intergenic 50.0%
CATCTTCTCCGACGAATCTC+CGG + chr5_4:22618143-22618162 Msa0844280:five_prime_UTR 50.0%
CGATGAGATCGGAGATCAGT+CGG - chr5_4:22618178-22618197 None:intergenic 50.0%
CGACTGATCTCCGATCTCAT+CGG + chr5_4:22618176-22618195 Msa0844280:five_prime_UTR 50.0%
GATGGAGTGCAAGCCTTTAC+CGG + chr5_4:22618263-22618282 Msa0844280:CDS 50.0%
AGCGAGAGCGATTCTTGTTG+AGG + chr5_4:22618314-22618333 Msa0844280:CDS 50.0%
AAGTGTCCGGTTACGGTTTG+TGG + chr5_4:22618357-22618376 Msa0844280:CDS 50.0%
!! TCGGATTGGTGGAAATGCTC+CGG + chr5_4:22618419-22618438 Msa0844280:CDS 50.0%
TCCAACAGAAAAGCAGGAGG+GGG - chr5_4:22619655-22619674 None:intergenic 50.0%
TATCACACCGTAGGGGGTTA+GGG + chr5_4:22619757-22619776 Msa0844280:intron 50.0%
!!! TGGTTTTACCAAGGGCACCA+TGG + chr5_4:22620809-22620828 Msa0844280:intron 50.0%
TGGAGGTCTCTCACCATCTT+TGG + chr5_4:22621247-22621266 Msa0844280:CDS 50.0%
ACTGGATAATATCCGCGCCT+TGG + chr5_4:22621274-22621293 Msa0844280:CDS 50.0%
AACCTCCTGTATGCGATCCA+AGG - chr5_4:22621294-22621313 None:intergenic 50.0%
ACCATGTCGTAGAGGTTGAC+TGG + chr5_4:22621661-22621680 Msa0844280:intron 50.0%
TCCAGTCAACCTCTACGACA+TGG - chr5_4:22621665-22621684 None:intergenic 50.0%
AACGTATATCCAGCACCACG+TGG - chr5_4:22621800-22621819 None:intergenic 50.0%
! CGTGGTGCTGGATATACGTT+TGG + chr5_4:22621800-22621819 Msa0844280:CDS 50.0%
! GCTCATCAGCTTGTGATGGA+AGG + chr5_4:22621878-22621897 Msa0844280:CDS 50.0%
! GGAAGGATACAATTGGTGCC+AGG + chr5_4:22621895-22621914 Msa0844280:CDS 50.0%
CTGCTACCGATGTGGGAATA+TGG + chr5_4:22622043-22622062 Msa0844280:CDS 50.0%
TGGCAGCCATATTCCCACAT+CGG - chr5_4:22622052-22622071 None:intergenic 50.0%
TGGGAATATGGCTGCCATTC+TGG + chr5_4:22622055-22622074 Msa0844280:CDS 50.0%
TGCAGTTTGATCCAGCTCCA+AGG + chr5_4:22622108-22622127 Msa0844280:CDS 50.0%
GTGTCAGGCTCAATTTGCCT+TGG - chr5_4:22622128-22622147 None:intergenic 50.0%
GGTGTCTTTCGTGTAGTGTC+AGG - chr5_4:22622143-22622162 None:intergenic 50.0%
AGGAGGAAGCGGCAATAACA+TGG + chr5_4:22622391-22622410 Msa0844280:three_prime_UTR 50.0%
CATATCATGGGTAGGGTTGG+TGG + chr5_4:22622562-22622581 Msa0844280:three_prime_UTR 50.0%
!! TATCATGGGTAGGGTTGGTG+GGG + chr5_4:22622564-22622583 Msa0844280:three_prime_UTR 50.0%
CGTCGGAGAAGATGAAGCTG+AGG - chr5_4:22618137-22618156 None:intergenic 55.0%
TTCAACCATGCCGTCACACG+CGG + chr5_4:22618215-22618234 Msa0844280:exon 55.0%
TCGGCAGATCGAGAGTCTGA+TGG + chr5_4:22618245-22618264 Msa0844280:CDS 55.0%
TTCACATCCGCCTCCGGTAA+AGG - chr5_4:22618279-22618298 None:intergenic 55.0%
TTTACCGGAGGCGGATGTGA+AGG + chr5_4:22618278-22618297 Msa0844280:CDS 55.0%
! CGTTCAACCGGTGAAGTGTC+CGG + chr5_4:22618344-22618363 Msa0844280:CDS 55.0%
! ACCGGTGAAGTGTCCGGTTA+CGG + chr5_4:22618350-22618369 Msa0844280:CDS 55.0%
ACCGTAACCGGACACTTCAC+CGG - chr5_4:22618354-22618373 None:intergenic 55.0%
CTATCACACCGTAGGGGGTT+AGG + chr5_4:22619756-22619775 Msa0844280:intron 55.0%
AAGTTCAATGCGGGGGGGTT+CGG + chr5_4:22620634-22620653 Msa0844280:intron 55.0%
CTCTCAATGAGGGCAGTCAG+AGG - chr5_4:22621135-22621154 None:intergenic 55.0%
GACTGCCCTCATTGAGAGTC+AGG + chr5_4:22621137-22621156 Msa0844280:CDS 55.0%
TCTGACCCAGACGATCGTTG+TGG + chr5_4:22621761-22621780 Msa0844280:CDS 55.0%
ACCCAGACGATCGTTGTGGT+TGG + chr5_4:22621765-22621784 Msa0844280:CDS 55.0%
CCCAACCACAACGATCGTCT+GGG - chr5_4:22621769-22621788 None:intergenic 55.0%
CCCAGACGATCGTTGTGGTT+GGG + chr5_4:22621766-22621785 Msa0844280:CDS 55.0%
CCAGACGATCGTTGTGGTTG+GGG + chr5_4:22621767-22621786 Msa0844280:CDS 55.0%
GGTTGGGGTATATCTCCACG+TGG + chr5_4:22621782-22621801 Msa0844280:CDS 55.0%
GGTATATCTCCACGTGGTGC+TGG + chr5_4:22621788-22621807 Msa0844280:CDS 55.0%
AGTGTTACGGGTCAGTCACC+TGG - chr5_4:22621916-22621935 None:intergenic 55.0%
GGCTCAATTTGCCTTGGAGC+TGG - chr5_4:22622122-22622141 None:intergenic 55.0%
GATCGGAGATCAGTCGGCGA+CGG - chr5_4:22618172-22618191 None:intergenic 60.0%
CGATCCAGATCCGCGTGTGA+CGG - chr5_4:22618228-22618247 None:intergenic 60.0%
CGTCACACGCGGATCTGGAT+CGG + chr5_4:22618226-22618245 Msa0844280:CDS 60.0%
GGAGTGCAAGCCTTTACCGG+AGG + chr5_4:22618266-22618285 Msa0844280:CDS 60.0%
GTGCAAGCCTTTACCGGAGG+CGG + chr5_4:22618269-22618288 Msa0844280:CDS 60.0%
!! GCCCCCTCCTGCTTTTCTGT+TGG + chr5_4:22619651-22619670 Msa0844280:intron 60.0%
TGTACGCTCCATGGTGCCCT+TGG - chr5_4:22620820-22620839 None:intergenic 60.0%
CCTGTATGCGATCCAAGGCG+CGG - chr5_4:22621289-22621308 None:intergenic 60.0%
CGCCTTGGATCGCATACAGG+AGG + chr5_4:22621289-22621308 Msa0844280:CDS 60.0%
CCCCAACCACAACGATCGTC+TGG - chr5_4:22621770-22621789 None:intergenic 60.0%
GACGGTCGCCGGAGATTCGT+CGG - chr5_4:22618154-22618173 None:intergenic 65.0%
CAGATCCGCGTGTGACGGCA+TGG - chr5_4:22618223-22618242 None:intergenic 65.0%
CATGCCGTCACACGCGGATC+TGG + chr5_4:22618221-22618240 Msa0844280:exon 65.0%
AGCGCCTTCACATCCGCCTC+CGG - chr5_4:22618285-22618304 None:intergenic 65.0%
CACACCGTAGGGGGTTAGGG+TGG + chr5_4:22619760-22619779 Msa0844280:intron 65.0%
GGCACCACCCTAACCCCCTA+CGG - chr5_4:22619767-22619786 None:intergenic 65.0%
GTAGGGGGTTAGGGTGGTGC+CGG + chr5_4:22619766-22619785 Msa0844280:intron 65.0%
! CAATGCGGGGGGGTTCGGTT+AGG + chr5_4:22620639-22620658 Msa0844280:intron 65.0%
CCGCGCCTTGGATCGCATAC+AGG + chr5_4:22621286-22621305 Msa0844280:CDS 65.0%
GATCAGTCGGCGACGGTCGC+CGG - chr5_4:22618165-22618184 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 22617975 22622622 22617975 ID=Msa0844280;Name=Msa0844280
chr5_4 mRNA 22617975 22622622 22617975 ID=Msa0844280-mRNA-1;Parent=Msa0844280;Name=Msa0844280-mRNA-1;_AED=0.10;_eAED=0.10;_QI=247|1|1|1|1|1|6|444|306
chr5_4 exon 22617975 22618474 22617975 ID=Msa0844280-mRNA-1:exon:9228;Parent=Msa0844280-mRNA-1
chr5_4 exon 22620327 22620441 22620327 ID=Msa0844280-mRNA-1:exon:9229;Parent=Msa0844280-mRNA-1
chr5_4 exon 22621050 22621158 22621050 ID=Msa0844280-mRNA-1:exon:9230;Parent=Msa0844280-mRNA-1
chr5_4 exon 22621233 22621310 22621233 ID=Msa0844280-mRNA-1:exon:9231;Parent=Msa0844280-mRNA-1
chr5_4 exon 22621725 22621916 22621725 ID=Msa0844280-mRNA-1:exon:9232;Parent=Msa0844280-mRNA-1
chr5_4 exon 22622005 22622622 22622005 ID=Msa0844280-mRNA-1:exon:9233;Parent=Msa0844280-mRNA-1
chr5_4 five_prime_UTR 22617975 22618221 22617975 ID=Msa0844280-mRNA-1:five_prime_utr;Parent=Msa0844280-mRNA-1
chr5_4 CDS 22618222 22618474 22618222 ID=Msa0844280-mRNA-1:cds;Parent=Msa0844280-mRNA-1
chr5_4 CDS 22620327 22620441 22620327 ID=Msa0844280-mRNA-1:cds;Parent=Msa0844280-mRNA-1
chr5_4 CDS 22621050 22621158 22621050 ID=Msa0844280-mRNA-1:cds;Parent=Msa0844280-mRNA-1
chr5_4 CDS 22621233 22621310 22621233 ID=Msa0844280-mRNA-1:cds;Parent=Msa0844280-mRNA-1
chr5_4 CDS 22621725 22621916 22621725 ID=Msa0844280-mRNA-1:cds;Parent=Msa0844280-mRNA-1
chr5_4 CDS 22622005 22622178 22622005 ID=Msa0844280-mRNA-1:cds;Parent=Msa0844280-mRNA-1
chr5_4 three_prime_UTR 22622179 22622622 22622179 ID=Msa0844280-mRNA-1:three_prime_utr;Parent=Msa0844280-mRNA-1
Gene Sequence

>Msa0844280

ATGCCGTCACACGCGGATCTGGATCGGCAGATCGAGAGTCTGATGGAGTGCAAGCCTTTACCGGAGGCGGATGTGAAGGCGCTATGCGATCAAGCGAGAGCGATTCTTGTTGAGGAATGGAACGTTCAACCGGTGAAGTGTCCGGTTACGGTTTGTGGTGATATTCATGGTCAATTTTATGATCTGATTGAGCTTTTTCGGATTGGTGGAAATGCTCCGGATACTAATTATCTCTTTATGGGAGATTATGTAGATCGTGGGTACTATTCAGTGGAGACTGTTTCACTTTTGGTGGCACTGAAAGTACGCTATAGAGATAGAATTACAATTCTCAGGGGAAATCATGAGAGCCGTCAAATTACTCAAGTGTATGGTTTCTACGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTGGATAATATCCGCGCCTTGGATCGCATACAGGAGGTTCCGCATGAAGGACCAATGTGTGATCTCTTGTGGTCTGACCCAGACGATCGTTGTGGTTGGGGTATATCTCCACGTGGTGCTGGATATACGTTTGGACAGGATATAGCTGCTCAGTTCAATCACACAAATGGTCTCTCGCTGATATCTAGAGCTCATCAGCTTGTGATGGAAGGATACAATTGGTGCCAGGAGAAGAATGTGGTGACTGTTTTTAGTGCTCCAAATTACTGCTACCGATGTGGGAATATGGCTGCCATTCTGGAAATTGGAGAGAATATGGATCAGAATTTTCTGCAGTTTGATCCAGCTCCAAGGCAAATTGAGCCTGACACTACACGAAAGACACCGGATTATTTTTTGTAA

Protein sequence

>Msa0844280

MPSHADLDRQIESLMECKPLPEADVKALCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL*