Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa0835310 | 0.803330 | 3.669654e-49 | -8.615850e-47 |
| Msa0017510 | Msa0835310 | 0.822282 | 2.575357e-53 | -8.615850e-47 |
| Msa0028640 | Msa0835310 | 0.800712 | 1.267374e-48 | -8.615850e-47 |
| Msa0033980 | Msa0835310 | 0.800776 | 1.229568e-48 | -8.615850e-47 |
| Msa0040450 | Msa0835310 | 0.807588 | 4.697070e-50 | -8.615850e-47 |
| Msa0081930 | Msa0835310 | 0.817072 | 3.985566e-52 | -8.615850e-47 |
| Msa0112750 | Msa0835310 | 0.810445 | 1.148770e-50 | -8.615850e-47 |
| Msa0115810 | Msa0835310 | 0.811694 | 6.157732e-51 | -8.615850e-47 |
| Msa0625720 | Msa0835310 | 0.801493 | 8.774098e-49 | -8.615850e-47 |
| Msa0657970 | Msa0835310 | 0.817306 | 3.530845e-52 | -8.615850e-47 |
| Msa0673460 | Msa0835310 | 0.801139 | 1.036742e-48 | -8.615850e-47 |
| Msa0692230 | Msa0835310 | 0.810710 | 1.006556e-50 | -8.615850e-47 |
| Msa0693380 | Msa0835310 | 0.810744 | 9.899687e-51 | -8.615850e-47 |
| Msa0696640 | Msa0835310 | 0.817441 | 3.291747e-52 | -8.615850e-47 |
| Msa0708520 | Msa0835310 | 0.800969 | 1.123270e-48 | -8.615850e-47 |
| Msa0745790 | Msa0835310 | 0.818485 | 1.912600e-52 | -8.615850e-47 |
| Msa0790510 | Msa0835310 | 0.822993 | 1.759411e-53 | -8.615850e-47 |
| Msa0796530 | Msa0835310 | 0.827074 | 1.912131e-54 | -8.615850e-47 |
| Msa0827040 | Msa0835310 | 0.802936 | 4.427011e-49 | -8.615850e-47 |
| Msa0835310 | Msa0844240 | 0.811006 | 8.686121e-51 | -8.615850e-47 |
| Msa0835310 | Msa0876200 | 0.825675 | 4.118682e-54 | -8.615850e-47 |
| Msa0835310 | Msa0880140 | 0.822599 | 2.173598e-53 | -8.615850e-47 |
| Msa0835310 | Msa1010350 | 0.835767 | 1.385082e-56 | -8.615850e-47 |
| Msa0835310 | Msa1014540 | 0.807065 | 6.064808e-50 | -8.615850e-47 |
| Msa0835310 | Msa1082500 | 0.839935 | 1.176747e-57 | -8.615850e-47 |
| Msa0835310 | Msa1111180 | 0.802125 | 6.506639e-49 | -8.615850e-47 |
| Msa0835310 | Msa1131220 | 0.805268 | 1.448954e-49 | -8.615850e-47 |
| Msa0835310 | Msa1147900 | 0.810052 | 1.395854e-50 | -8.615850e-47 |
| Msa0835310 | Msa1172670 | 0.835149 | 1.985126e-56 | -8.615850e-47 |
| Msa0835310 | Msa1193290 | 0.818600 | 1.800964e-52 | -8.615850e-47 |
| Msa0835310 | Msa1233890 | 0.815047 | 1.129203e-51 | -8.615850e-47 |
| Msa0835310 | Msa1242220 | 0.810722 | 1.000544e-50 | -8.615850e-47 |
| Msa0835310 | Msa1250890 | 0.809812 | 1.572633e-50 | -8.615850e-47 |
| Msa0835310 | Msa1283860 | 0.808061 | 3.726021e-50 | -8.615850e-47 |
| Msa0835310 | Msa1305340 | 0.810906 | 9.132903e-51 | -8.615850e-47 |
| Msa0835310 | Msa1314340 | 0.817989 | 2.477067e-52 | -8.615850e-47 |
| Msa0835310 | Msa1320620 | 0.805715 | 1.167935e-49 | -8.615850e-47 |
| Msa0835310 | Msa1322890 | 0.815311 | 9.867687e-52 | -8.615850e-47 |
| Msa0835310 | Msa1353980 | 0.805726 | 1.161491e-49 | -8.615850e-47 |
| Msa0835310 | Msa1372760 | 0.802284 | 6.036554e-49 | -8.615850e-47 |
| Msa0835310 | Msa1384350 | 0.808796 | 2.597124e-50 | -8.615850e-47 |
| Msa0835310 | Msa1385670 | 0.805391 | 1.365294e-49 | -8.615850e-47 |
| Msa0835310 | Msa1392260 | 0.817405 | 3.355007e-52 | -8.615850e-47 |
| Msa0835310 | Msa1411020 | 0.806242 | 9.046222e-50 | -8.615850e-47 |
| Msa0835310 | Msa1434350 | 0.801772 | 7.688492e-49 | -8.615850e-47 |
| Msa0835310 | Msa1435370 | 0.814459 | 1.524306e-51 | -8.615850e-47 |
| Msa0835310 | Msa1439320 | 0.804038 | 2.616230e-49 | -8.615850e-47 |
| Msa0835310 | Msa1440910 | 0.818506 | 1.891322e-52 | -8.615850e-47 |
| Msa0835310 | Msa1460890 | 0.802685 | 4.990289e-49 | -8.615850e-47 |
| Msa0835310 | Msa1463670 | 0.808684 | 2.744500e-50 | -8.615850e-47 |
| Msa0122590 | Msa0835310 | 0.817431 | 3.310005e-52 | -8.615850e-47 |
| Msa0140780 | Msa0835310 | 0.803053 | 4.188470e-49 | -8.615850e-47 |
| Msa0150820 | Msa0835310 | 0.801578 | 8.426919e-49 | -8.615850e-47 |
| Msa0157290 | Msa0835310 | 0.821654 | 3.598665e-53 | -8.615850e-47 |
| Msa0169860 | Msa0835310 | 0.802322 | 5.927416e-49 | -8.615850e-47 |
| Msa0171120 | Msa0835310 | 0.809256 | 2.069969e-50 | -8.615850e-47 |
| Msa0173990 | Msa0835310 | 0.809759 | 1.614565e-50 | -8.615850e-47 |
| Msa0178930 | Msa0835310 | 0.801908 | 7.212456e-49 | -8.615850e-47 |
| Msa0188830 | Msa0835310 | 0.803016 | 4.261846e-49 | -8.615850e-47 |
| Msa0197660 | Msa0835310 | 0.800966 | 1.124376e-48 | -8.615850e-47 |
| Msa0200260 | Msa0835310 | 0.804086 | 2.557179e-49 | -8.615850e-47 |
| Msa0220580 | Msa0835310 | 0.809153 | 2.177876e-50 | -8.615850e-47 |
| Msa0222620 | Msa0835310 | 0.822779 | 1.973649e-53 | -8.615850e-47 |
| Msa0389340 | Msa0835310 | 0.818563 | 1.836154e-52 | -8.615850e-47 |
| Msa0239800 | Msa0835310 | 0.803119 | 4.059252e-49 | -8.615850e-47 |
| Msa0243100 | Msa0835310 | 0.817647 | 2.957959e-52 | -8.615850e-47 |
| Msa0270100 | Msa0835310 | 0.831134 | 1.982881e-55 | -8.615850e-47 |
| Msa0282250 | Msa0835310 | 0.801835 | 7.463151e-49 | -8.615850e-47 |
| Msa0287650 | Msa0835310 | 0.841481 | 4.628527e-58 | -8.615850e-47 |
| Msa0288100 | Msa0835310 | 0.809959 | 1.462377e-50 | -8.615850e-47 |
| Msa0309770 | Msa0835310 | 0.802575 | 5.256264e-49 | -8.615850e-47 |
| Msa0317510 | Msa0835310 | 0.806047 | 9.941454e-50 | -8.615850e-47 |
| Msa0326520 | Msa0835310 | 0.806019 | 1.007948e-49 | -8.615850e-47 |
| Msa0339250 | Msa0835310 | 0.820490 | 6.673264e-53 | -8.615850e-47 |
| Msa0345970 | Msa0835310 | 0.803409 | 3.535326e-49 | -8.615850e-47 |
| Msa0484780 | Msa0835310 | 0.853006 | 3.178536e-61 | -8.615850e-47 |
| Msa0512900 | Msa0835310 | 0.806663 | 7.374661e-50 | -8.615850e-47 |
| Msa0547720 | Msa0835310 | 0.808706 | 2.714490e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 15 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACCAGTTTGCTTTGATTC+AGG | 0.268324 | 5_4:+8612273 | None:intergenic |
| TTAATTACTGTGCATAATTT+AGG | 0.285992 | 5_4:-8610722 | Msa0835310:CDS |
| TTCAGTGCTCCGATTGACTA+TGG | 0.337482 | 5_4:-8612253 | Msa0835310:CDS |
| AGACGGTGTTTACTTCTTCA+TGG | 0.386934 | 5_4:-8610810 | Msa0835310:CDS |
| GTTTCAATACCGAACCGAAC+TGG | 0.463267 | 5_4:-8612231 | Msa0835310:intron |
| TCACCTGAATCAAAGCAAAC+TGG | 0.466576 | 5_4:-8612276 | Msa0835310:CDS |
| ATTGAAAGACATATACGGTA+AGG | 0.475732 | 5_4:-8610605 | Msa0835310:three_prime_UTR |
| TTCGATCATAATGCTGCTGT+TGG | 0.516967 | 5_4:-8610759 | Msa0835310:CDS |
| CACAGTAATTAAATACATGC+AGG | 0.536586 | 5_4:+8610733 | None:intergenic |
| AAATGCTTCATGGATCAATC+CGG | 0.543945 | 5_4:+8610680 | None:intergenic |
| TTGAAAGACATATACGGTAA+GGG | 0.547780 | 5_4:-8610604 | Msa0835310:three_prime_UTR |
| ACATGATTGAAGCATTATGT+TGG | 0.555415 | 5_4:-8610784 | Msa0835310:CDS |
| TGAAAGACATATACGGTAAG+GGG | 0.560843 | 5_4:-8610603 | Msa0835310:three_prime_UTR |
| GTATTGAAACCATAGTCAAT+CGG | 0.577926 | 5_4:+8612244 | None:intergenic |
| TGTAACAATACTACTGTGTG+TGG | 0.674736 | 5_4:-8610578 | Msa0835310:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAACAGAATTAAAACA+CGG | - | chr5_4:8611728-8611747 | Msa0835310:intron | 15.0% |
| !!! | TTTTTATTGAAAGACATATA+CGG | - | chr5_4:8612200-8612219 | Msa0835310:intron | 15.0% |
| !! | ATATATTTGCATTTAGTGTT+TGG | + | chr5_4:8610643-8610662 | None:intergenic | 20.0% |
| !! | AAACACTAAATGCAAATATA+TGG | - | chr5_4:8610642-8610661 | Msa0835310:three_prime_UTR | 20.0% |
| !! | ATTTAGTGTTTACAACAAAA+TGG | + | chr5_4:8610718-8610737 | None:intergenic | 20.0% |
| !! | ATTTAGTGTTTACAACAAAA+TGG | + | chr5_4:8610718-8610737 | None:intergenic | 20.0% |
| !!! | CAGTTTTTTTAAGGATAATT+TGG | - | chr5_4:8611777-8611796 | Msa0835310:intron | 20.0% |
| !! | ACAAAGTTGCAAAAATAAAA+CGG | + | chr5_4:8611978-8611997 | None:intergenic | 20.0% |
| !! | TTAATTACTGTGCATAATTT+AGG | - | chr5_4:8612088-8612107 | Msa0835310:intron | 20.0% |
| !! | CAAGATGCAAAATTTTGAAT+CGG | + | chr5_4:8610612-8610631 | None:intergenic | 25.0% |
| !! | ACCTAAATAGTCTTAGAATT+TGG | - | chr5_4:8610839-8610858 | Msa0835310:intron | 25.0% |
| !! | CCTAAATAGTCTTAGAATTT+GGG | - | chr5_4:8610840-8610859 | Msa0835310:intron | 25.0% |
| !!! | AGCTTTAAATGTTATCGAAA+AGG | - | chr5_4:8611445-8611464 | Msa0835310:intron | 25.0% |
| ! | TTATCGAAAAGGAAATTCAA+TGG | - | chr5_4:8611456-8611475 | Msa0835310:intron | 25.0% |
| !!! | TTAACGGTTCAGTTTTTTTA+AGG | - | chr5_4:8611768-8611787 | Msa0835310:intron | 25.0% |
| GTATTGAAACCATAGTCAAT+CGG | + | chr5_4:8610569-8610588 | None:intergenic | 30.0% | |
| !! | CCCAAATTCTAAGACTATTT+AGG | + | chr5_4:8610843-8610862 | None:intergenic | 30.0% |
| ! | AATAGTCTTAGAATTTGGGT+TGG | - | chr5_4:8610844-8610863 | Msa0835310:intron | 30.0% |
| ! | ATAGTCTTAGAATTTGGGTT+GGG | - | chr5_4:8610845-8610864 | Msa0835310:intron | 30.0% |
| CTTATAAACCCATATGTTCA+GGG | - | chr5_4:8610915-8610934 | Msa0835310:intron | 30.0% | |
| TTATAAACCCATATGTTCAG+GGG | - | chr5_4:8610916-8610935 | Msa0835310:intron | 30.0% | |
| TCACTTGTAAATCCATATTC+AGG | - | chr5_4:8611070-8611089 | Msa0835310:intron | 30.0% | |
| CACTTGTAAATCCATATTCA+GGG | - | chr5_4:8611071-8611090 | Msa0835310:intron | 30.0% | |
| ACTTGTAAATCCATATTCAG+GGG | - | chr5_4:8611072-8611091 | Msa0835310:intron | 30.0% | |
| CTAATTCAACCTTACAAAAC+CGG | - | chr5_4:8611252-8611271 | Msa0835310:intron | 30.0% | |
| ATGTTCTTTCTGTGGATTTA+AGG | + | chr5_4:8611494-8611513 | None:intergenic | 30.0% | |
| TCACCAAGTGATGATAAATT+AGG | - | chr5_4:8611513-8611532 | Msa0835310:intron | 30.0% | |
| CACCAAGTGATGATAAATTA+GGG | - | chr5_4:8611514-8611533 | Msa0835310:intron | 30.0% | |
| ACCAAGTGATGATAAATTAG+GGG | - | chr5_4:8611515-8611534 | Msa0835310:intron | 30.0% | |
| GGGGGATATAATTGATAAAA+CGG | - | chr5_4:8611535-8611554 | Msa0835310:intron | 30.0% | |
| GGGGATATAATTGATAAAAC+GGG | - | chr5_4:8611536-8611555 | Msa0835310:intron | 30.0% | |
| GGGATATAATTGATAAAACG+GGG | - | chr5_4:8611537-8611556 | Msa0835310:intron | 30.0% | |
| GGATATAATTGATAAAACGG+GGG | - | chr5_4:8611538-8611557 | Msa0835310:intron | 30.0% | |
| GATATAATTGATAAAACGGG+GGG | - | chr5_4:8611539-8611558 | Msa0835310:intron | 30.0% | |
| ATATAATTGATAAAACGGGG+GGG | - | chr5_4:8611540-8611559 | Msa0835310:intron | 30.0% | |
| ! | TTTCTTACCCATGAAGTTTT+AGG | - | chr5_4:8611591-8611610 | Msa0835310:intron | 30.0% |
| GAATTCACCTAAAACTTCAT+GGG | + | chr5_4:8611601-8611620 | None:intergenic | 30.0% | |
| AGAAAACAACTCTTACATTG+TGG | - | chr5_4:8611629-8611648 | Msa0835310:intron | 30.0% | |
| GAAAACAACTCTTACATTGT+GGG | - | chr5_4:8611630-8611649 | Msa0835310:intron | 30.0% | |
| AACTTCAAATTTCCACAGTT+TGG | + | chr5_4:8611700-8611719 | None:intergenic | 30.0% | |
| ! | AACTGTGGAAATTTGAAGTT+TGG | - | chr5_4:8611700-8611719 | Msa0835310:intron | 30.0% |
| TCAGTTTGCCAATCATTTAA+CGG | - | chr5_4:8611752-8611771 | Msa0835310:intron | 30.0% | |
| AAACTGAACCGTTAAATGAT+TGG | + | chr5_4:8611763-8611782 | None:intergenic | 30.0% | |
| ! | AAGGATAATTTGGTTCAGTT+TGG | - | chr5_4:8611787-8611806 | Msa0835310:intron | 30.0% |
| TTCTAATACCTGCATTGAAT+TGG | - | chr5_4:8611929-8611948 | Msa0835310:intron | 30.0% | |
| AAGATAAACCAATTCAATGC+AGG | + | chr5_4:8611940-8611959 | None:intergenic | 30.0% | |
| ! | ACATGATTGAAGCATTATGT+TGG | - | chr5_4:8612026-8612045 | Msa0835310:intron | 30.0% |
| CACAGTAATTAAATACATGC+AGG | + | chr5_4:8612080-8612099 | None:intergenic | 30.0% | |
| ATTGAAAGACATATACGGTA+AGG | - | chr5_4:8612205-8612224 | Msa0835310:intron | 30.0% | |
| TTGAAAGACATATACGGTAA+GGG | - | chr5_4:8612206-8612225 | Msa0835310:intron | 30.0% | |
| GAATCGGTAAAAAACCAGTT+CGG | + | chr5_4:8610596-8610615 | None:intergenic | 35.0% | |
| !! | GACATTGATTTGCATTTCAC+TGG | - | chr5_4:8610673-8610692 | Msa0835310:three_prime_UTR | 35.0% |
| TGTTTACAACAAAATGGAGC+GGG | + | chr5_4:8610712-8610731 | None:intergenic | 35.0% | |
| GTGTTTACAACAAAATGGAG+CGG | + | chr5_4:8610713-8610732 | None:intergenic | 35.0% | |
| ! | GAACCTAATTTGCATTTCAC+TGG | - | chr5_4:8610757-8610776 | Msa0835310:CDS | 35.0% |
| GATCCAGTGAAATGCAAATT+AGG | + | chr5_4:8610763-8610782 | None:intergenic | 35.0% | |
| TGTTTACAACAAAATGGAGC+GGG | + | chr5_4:8610712-8610731 | None:intergenic | 35.0% | |
| GTGTTTACAACAAAATGGAG+CGG | + | chr5_4:8610713-8610732 | None:intergenic | 35.0% | |
| GCTTATAAACCCATATGTTC+AGG | - | chr5_4:8610914-8610933 | Msa0835310:intron | 35.0% | |
| !! | CCTTAAAATCCGGTTTTGTA+AGG | + | chr5_4:8611264-8611283 | None:intergenic | 35.0% |
| ! | CCTTACAAAACCGGATTTTA+AGG | - | chr5_4:8611261-8611280 | Msa0835310:intron | 35.0% |
| ATGATATAAGGCTTGGACAT+GGG | + | chr5_4:8611306-8611325 | None:intergenic | 35.0% | |
| ACATTGGATGATATAAGGCT+TGG | + | chr5_4:8611313-8611332 | None:intergenic | 35.0% | |
| ! | AAGCCTTATATCATCCAATG+TGG | - | chr5_4:8611312-8611331 | Msa0835310:intron | 35.0% |
| ! | AGCCTTATATCATCCAATGT+GGG | - | chr5_4:8611313-8611332 | Msa0835310:intron | 35.0% |
| CATGAGTTGTGAATTCAGAA+AGG | - | chr5_4:8611418-8611437 | Msa0835310:intron | 35.0% | |
| CCAAGTGATGATAAATTAGG+GGG | - | chr5_4:8611516-8611535 | Msa0835310:intron | 35.0% | |
| CAAGTGATGATAAATTAGGG+GGG | - | chr5_4:8611517-8611536 | Msa0835310:intron | 35.0% | |
| CGAATTCACCTAAAACTTCA+TGG | + | chr5_4:8611602-8611621 | None:intergenic | 35.0% | |
| TGGTGAACTGAAACAAATTG+TGG | + | chr5_4:8611680-8611699 | None:intergenic | 35.0% | |
| ! | TTTTTGCAACTTTGTGCAGA+CGG | - | chr5_4:8611983-8612002 | Msa0835310:intron | 35.0% |
| ! | CTTGTAAATTTTGAACGTGC+CGG | - | chr5_4:8612111-8612130 | Msa0835310:intron | 35.0% |
| AAATGCTTCATGGATCAATC+CGG | + | chr5_4:8612133-8612152 | None:intergenic | 35.0% | |
| CTCATGACAAAAATGCTTCA+TGG | + | chr5_4:8612143-8612162 | None:intergenic | 35.0% | |
| ! | AAGCATTTTTGTCATGAGTC+AGG | - | chr5_4:8612145-8612164 | Msa0835310:intron | 35.0% |
| TGAAAGACATATACGGTAAG+GGG | - | chr5_4:8612207-8612226 | Msa0835310:intron | 35.0% | |
| TGTAACAATACTACTGTGTG+TGG | - | chr5_4:8612232-8612251 | Msa0835310:CDS | 35.0% | |
| TCACCTGAATCAAAGCAAAC+TGG | - | chr5_4:8610534-8610553 | Msa0835310:three_prime_UTR | 40.0% | |
| ! | GAACCAGTTTGCTTTGATTC+AGG | + | chr5_4:8610540-8610559 | None:intergenic | 40.0% |
| GGTAAAAAACCAGTTCGGTT+CGG | + | chr5_4:8610591-8610610 | None:intergenic | 40.0% | |
| ! | GCGAATTTGCAAGGTTGATT+AGG | + | chr5_4:8610871-8610890 | None:intergenic | 40.0% |
| CCTTAAAAGGCGAATTTGCA+AGG | + | chr5_4:8610880-8610899 | None:intergenic | 40.0% | |
| ! | CCTTGCAAATTCGCCTTTTA+AGG | - | chr5_4:8610877-8610896 | Msa0835310:intron | 40.0% |
| GATAAGTCCCCTGAACATAT+GGG | + | chr5_4:8610926-8610945 | None:intergenic | 40.0% | |
| AGATAAGTCCCCTGAACATA+TGG | + | chr5_4:8610927-8610946 | None:intergenic | 40.0% | |
| TGTGTGTTTGTGTCTCACAT+TGG | + | chr5_4:8610953-8610972 | None:intergenic | 40.0% | |
| TACTATAAGGTCACCGCTAT+CGG | + | chr5_4:8611012-8611031 | None:intergenic | 40.0% | |
| TGAGATAAGTCCCCTGAATA+TGG | + | chr5_4:8611085-8611104 | None:intergenic | 40.0% | |
| GGACTTATCTCATCCAATGT+GGG | - | chr5_4:8610937-8610956 | Msa0835310:intron | 40.0% | |
| ATGTTCAGTCTTGACATGAG+AGG | + | chr5_4:8611132-8611151 | None:intergenic | 40.0% | |
| TCATGTCAAGACTGAACATC+TGG | - | chr5_4:8611133-8611152 | Msa0835310:intron | 40.0% | |
| AAGCCTATACAAGATCTGCT+TGG | + | chr5_4:8611204-8611223 | None:intergenic | 40.0% | |
| !!! | CAAAACCGGATTTTAAGGTG+AGG | - | chr5_4:8611266-8611285 | Msa0835310:intron | 40.0% |
| GCAAACCTCACCTTAAAATC+CGG | + | chr5_4:8611274-8611293 | None:intergenic | 40.0% | |
| GATGATATAAGGCTTGGACA+TGG | + | chr5_4:8611307-8611326 | None:intergenic | 40.0% | |
| GTCCCACATTGGATGATATA+AGG | + | chr5_4:8611318-8611337 | None:intergenic | 40.0% | |
| TACATGTTAGAGTCCCACAT+TGG | + | chr5_4:8611329-8611348 | None:intergenic | 40.0% | |
| AGCAGACACTAGTCACTTAA+GGG | + | chr5_4:8611371-8611390 | None:intergenic | 40.0% | |
| AAGCAGACACTAGTCACTTA+AGG | + | chr5_4:8611372-8611391 | None:intergenic | 40.0% | |
| !! | ACTTGGTGATGTTCTTTCTG+TGG | + | chr5_4:8611502-8611521 | None:intergenic | 40.0% |
| CCCCCTAATTTATCATCACT+TGG | + | chr5_4:8611519-8611538 | None:intergenic | 40.0% | |
| TGTTTCAGTTCACCAAACTG+TGG | - | chr5_4:8611685-8611704 | Msa0835310:intron | 40.0% | |
| TTTCACAAGAGACCACGTTT+CGG | + | chr5_4:8611839-8611858 | None:intergenic | 40.0% | |
| TGCGGTGATTATCGAAAATG+TGG | + | chr5_4:8611865-8611884 | None:intergenic | 40.0% | |
| ! | ACATTTTCGATAATCACCGC+AGG | - | chr5_4:8611864-8611883 | Msa0835310:intron | 40.0% |
| AGACGGTGTTTACTTCTTCA+TGG | - | chr5_4:8612000-8612019 | Msa0835310:intron | 40.0% | |
| TTCGATCATAATGCTGCTGT+TGG | - | chr5_4:8612051-8612070 | Msa0835310:intron | 40.0% | |
| TTCAGTGCTCCGATTGACTA+TGG | - | chr5_4:8610557-8610576 | Msa0835310:three_prime_UTR | 45.0% | |
| GTTTCAATACCGAACCGAAC+TGG | - | chr5_4:8610579-8610598 | Msa0835310:three_prime_UTR | 45.0% | |
| !!! | CAAATTCGCCTTTTAAGGCG+AGG | - | chr5_4:8610882-8610901 | Msa0835310:intron | 45.0% |
| AGTGCAAACCTCGCCTTAAA+AGG | + | chr5_4:8610893-8610912 | None:intergenic | 45.0% | |
| !! | ATGTTCACTTTTGGGCGTGA+GGG | + | chr5_4:8610977-8610996 | None:intergenic | 45.0% |
| !! | CGCTCCAGATGTTCACTTTT+GGG | + | chr5_4:8610985-8611004 | None:intergenic | 45.0% |
| ! | ACGCTCCAGATGTTCACTTT+TGG | + | chr5_4:8610986-8611005 | None:intergenic | 45.0% |
| ACTATAAGGTCACCGCTATC+GGG | + | chr5_4:8611011-8611030 | None:intergenic | 45.0% | |
| ! | GATAGCGGTGACCTTATAGT+AGG | - | chr5_4:8611011-8611030 | Msa0835310:intron | 45.0% |
| AGGTCTTGGATAGGATCTGT+GGG | - | chr5_4:8611043-8611062 | Msa0835310:intron | 45.0% | |
| GGGACTTATCTCATCCAATG+TGG | - | chr5_4:8610936-8610955 | Msa0835310:intron | 45.0% | |
| !! | CGCATGTTTTTGTCCCACAT+TGG | + | chr5_4:8611109-8611128 | None:intergenic | 45.0% |
| TCAAGACTGAACATCTGGAG+CGG | - | chr5_4:8611138-8611157 | Msa0835310:intron | 45.0% | |
| TGCTATAAGGTCACCGCTAT+CGG | + | chr5_4:8611176-8611195 | None:intergenic | 45.0% | |
| TGGCCAAGCAGATCTTGTAT+AGG | - | chr5_4:8611198-8611217 | Msa0835310:intron | 45.0% | |
| GCAGACACTAGTCACTTAAG+GGG | + | chr5_4:8611370-8611389 | None:intergenic | 45.0% | |
| ACTCTTACATTGTGGGTGTG+TGG | - | chr5_4:8611637-8611656 | Msa0835310:intron | 45.0% | |
| TTCGATAATCACCGCAGGTT+TGG | - | chr5_4:8611869-8611888 | Msa0835310:intron | 45.0% | |
| ! | TAATCACCGCAGGTTTGGTT+TGG | - | chr5_4:8611874-8611893 | Msa0835310:intron | 45.0% |
| ACCTTACCAAACCAAACCTG+CGG | + | chr5_4:8611883-8611902 | None:intergenic | 45.0% | |
| !! | TGTTCACTTTTGGGCGTGAG+GGG | + | chr5_4:8610976-8610995 | None:intergenic | 50.0% |
| !! | GATGTTCACTTTTGGGCGTG+AGG | + | chr5_4:8610978-8610997 | None:intergenic | 50.0% |
| CACGCCCAAAAGTGAACATC+TGG | - | chr5_4:8610978-8610997 | Msa0835310:intron | 50.0% | |
| AGCGGTGACCTTATAGTAGG+TGG | - | chr5_4:8611014-8611033 | Msa0835310:intron | 50.0% | |
| ! | CTGGTGGACCACCTACTATA+AGG | + | chr5_4:8611025-8611044 | None:intergenic | 50.0% |
| CTTATAGTAGGTGGTCCACC+AGG | - | chr5_4:8611023-8611042 | Msa0835310:intron | 50.0% | |
| AGATCCTATCCAAGACCTGG+TGG | + | chr5_4:8611041-8611060 | None:intergenic | 50.0% | |
| CACAGATCCTATCCAAGACC+TGG | + | chr5_4:8611044-8611063 | None:intergenic | 50.0% | |
| CAGGTCTTGGATAGGATCTG+TGG | - | chr5_4:8611042-8611061 | Msa0835310:intron | 50.0% | |
| ! | CAAGACTGAACATCTGGAGC+GGG | - | chr5_4:8611139-8611158 | Msa0835310:intron | 50.0% |
| GCTATAAGGTCACCGCTATC+GGG | + | chr5_4:8611175-8611194 | None:intergenic | 50.0% | |
| AGCGGTGACCTTATAGCAGT+TGG | - | chr5_4:8611178-8611197 | Msa0835310:intron | 50.0% | |
| CTGCTTGGCCAACTGCTATA+AGG | + | chr5_4:8611189-8611208 | None:intergenic | 50.0% | |
| ACTTAAGGGGACAGTGTTGC+TGG | + | chr5_4:8611357-8611376 | None:intergenic | 50.0% | |
| TTGTGGGTGTGTGGAACAAC+AGG | - | chr5_4:8611646-8611665 | Msa0835310:intron | 50.0% | |
| TGTGGGTGTGTGGAACAACA+GGG | - | chr5_4:8611647-8611666 | Msa0835310:intron | 50.0% | |
| ! | ATTTTCTGCCAGCCGAAACG+TGG | - | chr5_4:8611824-8611843 | Msa0835310:intron | 50.0% |
| !! | ACCGCAGGTTTGGTTTGGTA+AGG | - | chr5_4:8611879-8611898 | Msa0835310:intron | 50.0% |
| TGGTCCACCAGGTCTTGGAT+AGG | - | chr5_4:8611034-8611053 | Msa0835310:intron | 55.0% | |
| GGTGTGTGGAACAACAGGGA+GGG | - | chr5_4:8611651-8611670 | Msa0835310:intron | 55.0% | |
| GTGTGTGGAACAACAGGGAG+GGG | - | chr5_4:8611652-8611671 | Msa0835310:intron | 55.0% | |
| TGTGTGGAACAACAGGGAGG+GGG | - | chr5_4:8611653-8611672 | Msa0835310:intron | 55.0% | |
| ACAAGAGACCACGTTTCGGC+TGG | + | chr5_4:8611835-8611854 | None:intergenic | 55.0% | |
| ! | TCTGGAGCGTGACCCGATAG+CGG | - | chr5_4:8610996-8611015 | Msa0835310:intron | 60.0% |
| GTAGGTGGTCCACCAGGTCT+TGG | - | chr5_4:8611029-8611048 | Msa0835310:intron | 60.0% | |
| GGGTGTGTGGAACAACAGGG+AGG | - | chr5_4:8611650-8611669 | Msa0835310:intron | 60.0% | |
| ! | CATCTGGAGCGGGACCTGAG+TGG | - | chr5_4:8611149-8611168 | Msa0835310:intron | 65.0% |
| GGACCTGAGTGGCCCGATAG+CGG | - | chr5_4:8611160-8611179 | Msa0835310:intron | 65.0% | |
| TCACCGCTATCGGGCCACTC+AGG | + | chr5_4:8611166-8611185 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 8610528 | 8612304 | 8610528 | ID=Msa0835310;Name=Msa0835310 |
| chr5_4 | mRNA | 8610528 | 8612304 | 8610528 | ID=Msa0835310-mRNA-1;Parent=Msa0835310;Name=Msa0835310-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0.5|0.5|1|1|2|187|62 |
| chr5_4 | exon | 8610528 | 8610830 | 8610528 | ID=Msa0835310-mRNA-1:exon:3825;Parent=Msa0835310-mRNA-1 |
| chr5_4 | exon | 8612232 | 8612304 | 8612232 | ID=Msa0835310-mRNA-1:exon:3824;Parent=Msa0835310-mRNA-1 |
| chr5_4 | CDS | 8612232 | 8612304 | 8612232 | ID=Msa0835310-mRNA-1:cds;Parent=Msa0835310-mRNA-1 |
| chr5_4 | CDS | 8610715 | 8610830 | 8610715 | ID=Msa0835310-mRNA-1:cds;Parent=Msa0835310-mRNA-1 |
| chr5_4 | three_prime_UTR | 8610528 | 8610714 | 8610528 | ID=Msa0835310-mRNA-1:three_prime_utr;Parent=Msa0835310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
