Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878960 | XP_013451595.1 | 98.643 | 442 | 6 | 0 | 1 | 442 | 1 | 442 | 0.0 | 890 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878960 | sp|Q8RWF4|NIPA8_ARATH | 75.000 | 436 | 104 | 3 | 1 | 433 | 1 | 434 | 0.0 | 667 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878960 | A0A072U945 | 98.643 | 442 | 6 | 0 | 1 | 442 | 1 | 442 | 0.0 | 890 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012710 | Msa0878960 | 0.824559 | 7.560977e-54 | -8.615850e-47 |
| Msa0033850 | Msa0878960 | 0.818011 | 2.448624e-52 | -8.615850e-47 |
| Msa0043500 | Msa0878960 | 0.834914 | 2.274945e-56 | -8.615850e-47 |
| Msa0043650 | Msa0878960 | 0.833679 | 4.644119e-56 | -8.615850e-47 |
| Msa0055070 | Msa0878960 | 0.822399 | 2.418812e-53 | -8.615850e-47 |
| Msa0057590 | Msa0878960 | 0.829445 | 5.127601e-55 | -8.615850e-47 |
| Msa0060070 | Msa0878960 | 0.820042 | 8.451118e-53 | -8.615850e-47 |
| Msa0061500 | Msa0878960 | 0.827121 | 1.863769e-54 | -8.615850e-47 |
| Msa0092410 | Msa0878960 | 0.828992 | 6.603176e-55 | -8.615850e-47 |
| Msa0101020 | Msa0878960 | 0.820967 | 5.184531e-53 | -8.615850e-47 |
| Msa0106050 | Msa0878960 | 0.823878 | 1.092350e-53 | -8.615850e-47 |
| Msa0111080 | Msa0878960 | 0.802843 | 4.628362e-49 | -8.615850e-47 |
| Msa0112270 | Msa0878960 | 0.819113 | 1.377392e-52 | -8.615850e-47 |
| Msa0659790 | Msa0878960 | 0.822135 | 2.784696e-53 | -8.615850e-47 |
| Msa0721340 | Msa0878960 | 0.810445 | 1.148401e-50 | -8.615850e-47 |
| Msa0743530 | Msa0878960 | 0.811012 | 8.660029e-51 | -8.615850e-47 |
| Msa0750250 | Msa0878960 | 0.827500 | 1.511897e-54 | -8.615850e-47 |
| Msa0758250 | Msa0878960 | 0.803345 | 3.644795e-49 | -8.615850e-47 |
| Msa0779260 | Msa0878960 | 0.817249 | 3.637143e-52 | -8.615850e-47 |
| Msa0786750 | Msa0878960 | 0.807200 | 5.677726e-50 | -8.615850e-47 |
| Msa0794210 | Msa0878960 | 0.806874 | 6.655018e-50 | -8.615850e-47 |
| Msa0809140 | Msa0878960 | 0.814440 | 1.539007e-51 | -8.615850e-47 |
| Msa0125650 | Msa0878960 | 0.811729 | 6.050886e-51 | -8.615850e-47 |
| Msa0136630 | Msa0878960 | 0.815691 | 8.117969e-52 | -8.615850e-47 |
| Msa0137800 | Msa0878960 | 0.805646 | 1.207256e-49 | -8.615850e-47 |
| Msa0145110 | Msa0878960 | 0.824118 | 9.597164e-54 | -8.615850e-47 |
| Msa0152560 | Msa0878960 | 0.819329 | 1.230006e-52 | -8.615850e-47 |
| Msa0154920 | Msa0878960 | 0.801265 | 9.768050e-49 | -8.615850e-47 |
| Msa0187830 | Msa0878960 | 0.817617 | 3.005452e-52 | -8.615850e-47 |
| Msa0202930 | Msa0878960 | 0.809071 | 2.267581e-50 | -8.615850e-47 |
| Msa0215590 | Msa0878960 | 0.822060 | 2.898721e-53 | -8.615850e-47 |
| Msa0230370 | Msa0878960 | 0.811406 | 7.113760e-51 | -8.615850e-47 |
| Msa0233290 | Msa0878960 | 0.802036 | 6.786415e-49 | -8.615850e-47 |
| Msa0236070 | Msa0878960 | 0.824041 | 1.000607e-53 | -8.615850e-47 |
| Msa0382490 | Msa0878960 | 0.811821 | 5.779798e-51 | -8.615850e-47 |
| Msa0422180 | Msa0878960 | 0.809882 | 1.518598e-50 | -8.615850e-47 |
| Msa0432160 | Msa0878960 | 0.817375 | 3.407140e-52 | -8.615850e-47 |
| Msa0432670 | Msa0878960 | 0.813732 | 2.205364e-51 | -8.615850e-47 |
| Msa0476680 | Msa0878960 | 0.818463 | 1.934596e-52 | -8.615850e-47 |
| Msa0244930 | Msa0878960 | 0.825634 | 4.213201e-54 | -8.615850e-47 |
| Msa0255850 | Msa0878960 | 0.817685 | 2.901167e-52 | -8.615850e-47 |
| Msa0269560 | Msa0878960 | 0.805667 | 1.195058e-49 | -8.615850e-47 |
| Msa0282720 | Msa0878960 | 0.801120 | 1.046105e-48 | -8.615850e-47 |
| Msa0322680 | Msa0878960 | 0.805413 | 1.351319e-49 | -8.615850e-47 |
| Msa0333650 | Msa0878960 | 0.822434 | 2.373617e-53 | -8.615850e-47 |
| Msa0347750 | Msa0878960 | 0.817297 | 3.547850e-52 | -8.615850e-47 |
| Msa0514610 | Msa0878960 | 0.832958 | 7.021750e-56 | -8.615850e-47 |
| Msa0521010 | Msa0878960 | 0.813682 | 2.261740e-51 | -8.615850e-47 |
| Msa0878960 | Msa0879060 | 0.883488 | 4.302203e-71 | -8.615850e-47 |
| Msa0878960 | Msa0901320 | 0.805920 | 1.057318e-49 | -8.615850e-47 |
| Msa0878960 | Msa0973070 | 0.802421 | 5.656335e-49 | -8.615850e-47 |
| Msa0878960 | Msa1034500 | 0.800224 | 1.593527e-48 | -8.615850e-47 |
| Msa0878960 | Msa1034700 | 0.807474 | 4.965591e-50 | -8.615850e-47 |
| Msa0878960 | Msa1043120 | 0.807190 | 5.705569e-50 | -8.615850e-47 |
| Msa0878960 | Msa1074540 | 0.820616 | 6.244616e-53 | -8.615850e-47 |
| Msa0878960 | Msa1096070 | 0.816150 | 6.415685e-52 | -8.615850e-47 |
| Msa0878960 | Msa1119090 | 0.802200 | 6.280940e-49 | -8.615850e-47 |
| Msa0878960 | Msa1119190 | 0.800724 | 1.260322e-48 | -8.615850e-47 |
| Msa0878960 | Msa1143020 | 0.808285 | 3.337966e-50 | -8.615850e-47 |
| Msa0878960 | Msa1177780 | 0.800609 | 1.330024e-48 | -8.615850e-47 |
| Msa0878960 | Msa1197070 | 0.821423 | 4.068809e-53 | -8.615850e-47 |
| Msa0878960 | Msa1206650 | 0.802935 | 4.429511e-49 | -8.615850e-47 |
| Msa0878960 | Msa1219900 | 0.803269 | 3.778521e-49 | -8.615850e-47 |
| Msa0878960 | Msa1225100 | 0.845984 | 2.887625e-59 | -8.615850e-47 |
| Msa0878960 | Msa1262010 | 0.808546 | 2.936595e-50 | -8.615850e-47 |
| Msa0878960 | Msa1262020 | 0.837026 | 6.624473e-57 | -8.615850e-47 |
| Msa0878960 | Msa1266330 | 0.816922 | 4.308469e-52 | -8.615850e-47 |
| Msa0878960 | Msa1286550 | 0.824276 | 8.813752e-54 | -8.615850e-47 |
| Msa0878960 | Msa1329870 | 0.847538 | 1.085592e-59 | -8.615850e-47 |
| Msa0878960 | Msa1332050 | 0.802553 | 5.311347e-49 | -8.615850e-47 |
| Msa0878960 | Msa1334400 | 0.805142 | 1.539838e-49 | -8.615850e-47 |
| Msa0878960 | Msa1334490 | 0.814461 | 1.523005e-51 | -8.615850e-47 |
| Msa0878960 | Msa1345940 | 0.812836 | 3.469096e-51 | -8.615850e-47 |
| Msa0878960 | Msa1365610 | 0.869136 | 3.880956e-66 | -8.615850e-47 |
| Msa0878960 | Msa1380400 | 0.807132 | 5.869179e-50 | -8.615850e-47 |
| Msa0878960 | Msa1405220 | 0.861769 | 8.126015e-64 | -8.615850e-47 |
| Msa0878960 | Msa1407190 | 0.811559 | 6.589542e-51 | -8.615850e-47 |
| Msa0878960 | Msa1408050 | 0.873680 | 1.218531e-67 | -8.615850e-47 |
| Msa0878960 | Msa1418280 | 0.818623 | 1.779595e-52 | -8.615850e-47 |
| Msa0878960 | Msa1418920 | 0.825270 | 5.137480e-54 | -8.615850e-47 |
| Msa0878960 | Msa1421900 | 0.802215 | 6.235103e-49 | -8.615850e-47 |
| Msa0878960 | Msa1424630 | 0.802933 | 4.434823e-49 | -8.615850e-47 |
| Msa0878960 | Msa1430550 | 0.830619 | 2.651389e-55 | -8.615850e-47 |
| Msa0878960 | Msa1432130 | 0.835966 | 1.233498e-56 | -8.615850e-47 |
| Msa0878960 | Msa1457160 | 0.802281 | 6.043386e-49 | -8.615850e-47 |
| Msa0878960 | Msa1458340 | 0.823178 | 1.593007e-53 | -8.615850e-47 |
| Msa0878960 | Msa1462470 | 0.815981 | 6.996749e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878960 | MtrunA17_Chr6g0461791 | 98.643 | 442 | 6 | 0 | 1 | 442 | 1 | 442 | 0.0 | 890 |
| Msa0878960 | MtrunA17_Chr3g0121551 | 20.205 | 292 | 217 | 2 | 52 | 343 | 50 | 325 | 8.93e-14 | 72.0 |
| Msa0878960 | MtrunA17_Chr4g0037541 | 19.557 | 271 | 198 | 4 | 57 | 324 | 54 | 307 | 7.64e-12 | 66.2 |
| Msa0878960 | MtrunA17_Chr2g0277341 | 21.708 | 281 | 195 | 3 | 52 | 324 | 60 | 323 | 2.84e-11 | 64.7 |
| Msa0878960 | MtrunA17_Chr8g0378181 | 18.794 | 282 | 202 | 3 | 52 | 322 | 50 | 315 | 7.34e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878960 | AT3G26670.2 | 75.000 | 436 | 104 | 3 | 1 | 433 | 1 | 434 | 0.0 | 667 |
| Msa0878960 | AT3G26670.4 | 75.000 | 436 | 104 | 3 | 1 | 433 | 1 | 434 | 0.0 | 667 |
| Msa0878960 | AT3G26670.3 | 75.000 | 436 | 104 | 3 | 1 | 433 | 1 | 434 | 0.0 | 667 |
| Msa0878960 | AT3G26670.1 | 75.000 | 436 | 104 | 3 | 1 | 433 | 1 | 434 | 0.0 | 667 |
| Msa0878960 | AT1G34470.1 | 22.846 | 267 | 178 | 2 | 57 | 316 | 67 | 312 | 4.06e-11 | 64.7 |
| Msa0878960 | AT2G21120.1 | 19.322 | 295 | 209 | 5 | 37 | 326 | 36 | 306 | 4.62e-11 | 64.3 |
| Msa0878960 | AT4G09640.1 | 21.569 | 306 | 212 | 6 | 57 | 359 | 67 | 347 | 5.30e-11 | 64.7 |
Find 107 sgRNAs with CRISPR-Local
Find 448 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCAGTACTGCTGGATTT+TGG | 0.142862 | 6_1:+20450535 | Msa0878960:CDS |
| TGCATAAGAAGTACATTTAA+AGG | 0.157238 | 6_1:-20453808 | None:intergenic |
| TGTGCACTATCTCTTGGTTT+TGG | 0.174892 | 6_1:+20453364 | Msa0878960:CDS |
| CTGAAATTGAAATTGAAATT+AGG | 0.185648 | 6_1:-20446907 | None:intergenic |
| CTAATTTCAATTTCAATTTC+AGG | 0.194609 | 6_1:+20446908 | Msa0878960:five_prime_UTR |
| GGGACCAATCTTCTCAAATT+AGG | 0.200420 | 6_1:+20447535 | Msa0878960:CDS |
| TCAAAGGGAAAGAGAAAATA+AGG | 0.211957 | 6_1:-20446809 | None:intergenic |
| TCTTAGCCGTTACTTGTAAA+TGG | 0.216028 | 6_1:-20449984 | None:intergenic |
| CAGTCACTTCTTGCAGCTTT+GGG | 0.250820 | 6_1:+20449432 | Msa0878960:intron |
| TCTTATGCAAATATATATAA+AGG | 0.264531 | 6_1:+20453822 | Msa0878960:three_prime_UTR |
| GATAAAGATTACAGATATTC+TGG | 0.265706 | 6_1:+20453236 | Msa0878960:CDS |
| TTGATACAATACAACAATTA+AGG | 0.267071 | 6_1:+20447342 | Msa0878960:five_prime_UTR |
| GCAGTCACTTCTTGCAGCTT+TGG | 0.277025 | 6_1:+20449431 | Msa0878960:intron |
| GCCACAGCTTTCATTGTTCT+TGG | 0.284449 | 6_1:+20449638 | Msa0878960:CDS |
| GTTCATTGGTATTTCTTTGC+TGG | 0.299314 | 6_1:+20452701 | Msa0878960:CDS |
| CGAGACTAAAGATAGTTCTT+TGG | 0.306013 | 6_1:+20452832 | Msa0878960:CDS |
| AGCCAAAGGAAATGAAATTA+AGG | 0.313097 | 6_1:-20449053 | None:intergenic |
| TGCCTTAATTTCATTTCCTT+TGG | 0.323753 | 6_1:+20449051 | Msa0878960:CDS |
| CAACTCTGAAAGTATATAAT+AGG | 0.327966 | 6_1:-20448902 | None:intergenic |
| TTGTGATGTTGGGTTGGGTT+GGG | 0.329107 | 6_1:-20446867 | None:intergenic |
| GTCTTTGCTGTGTGCTTCTT+CGG | 0.331223 | 6_1:-20453187 | None:intergenic |
| ACATGACCTCAAACCCATTT+GGG | 0.334317 | 6_1:+20450106 | Msa0878960:CDS |
| GGTAGTATTGCTATAAACTT+TGG | 0.334523 | 6_1:+20447514 | Msa0878960:CDS |
| CCTCTTTGTTTCTGTTGAAA+TGG | 0.356734 | 6_1:-20452873 | None:intergenic |
| TTACTTTGTGTTGAACAAAA+TGG | 0.359982 | 6_1:+20449488 | Msa0878960:CDS |
| TTATAGCAATACTACCAAAA+AGG | 0.362873 | 6_1:-20447507 | None:intergenic |
| TTCATTCTTGATGACATCAT+TGG | 0.366184 | 6_1:-20453424 | None:intergenic |
| TTCCTTTGGCTATGCTGCTC+AGG | 0.369645 | 6_1:+20449065 | Msa0878960:CDS |
| AACAGGTATTTGACACGTTA+AGG | 0.379853 | 6_1:+20452646 | Msa0878960:intron |
| CGGCAATAGCATACCCCAAA+TGG | 0.385675 | 6_1:-20450120 | None:intergenic |
| GTAGCAGACTTACAGTGATT+TGG | 0.388285 | 6_1:-20450195 | None:intergenic |
| GACATGACCTCAAACCCATT+TGG | 0.390111 | 6_1:+20450105 | Msa0878960:CDS |
| GAACTTCTGCTTGCTATATC+AGG | 0.394740 | 6_1:+20450083 | Msa0878960:CDS |
| CTTGGAAGTGATGGGGTACA+TGG | 0.397753 | 6_1:+20448863 | Msa0878960:CDS |
| GTGTCCTAATTTGAGAAGAT+TGG | 0.402950 | 6_1:-20447539 | None:intergenic |
| ACTTCTTGTGCACTATCTCT+TGG | 0.403283 | 6_1:+20453358 | Msa0878960:CDS |
| ACAAATAATTGAATTATGAA+TGG | 0.404575 | 6_1:-20453673 | None:intergenic |
| TATTTCTCTGTCAACTGCTC+TGG | 0.408057 | 6_1:-20449899 | None:intergenic |
| ATTGTGATGTTGGGTTGGGT+TGG | 0.421171 | 6_1:-20446868 | None:intergenic |
| TTGTCCTTTAAACAGGGTAT+TGG | 0.422996 | 6_1:+20449613 | Msa0878960:intron |
| AGGAAAGAGAGAAGAAGTTA+TGG | 0.424154 | 6_1:-20446642 | None:intergenic |
| GTAGTATTGCTATAAACTTT+GGG | 0.425761 | 6_1:+20447515 | Msa0878960:CDS |
| TTACGACTGGCTATGTCTAA+TGG | 0.429669 | 6_1:+20450468 | Msa0878960:CDS |
| AGGACAACAATGTTTATACT+TGG | 0.430760 | 6_1:+20452666 | Msa0878960:CDS |
| TGAAATTGAAATTGTGATGT+TGG | 0.452255 | 6_1:-20446878 | None:intergenic |
| TTTGTTTCTGTTGAAATGGC+AGG | 0.454053 | 6_1:-20452869 | None:intergenic |
| CAGAGAGAAAGACATTTACT+TGG | 0.454553 | 6_1:+20448845 | Msa0878960:intron |
| CTATTATATACTTTCAGAGT+TGG | 0.454723 | 6_1:+20448903 | Msa0878960:CDS |
| TTGAAATTGTGATGTTGGGT+TGG | 0.457425 | 6_1:-20446873 | None:intergenic |
| ATGGCTATCAGCTGCACAGC+TGG | 0.462592 | 6_1:+20450487 | Msa0878960:CDS |
| AGACATTTACTTGGAAGTGA+TGG | 0.463692 | 6_1:+20448854 | Msa0878960:CDS |
| ATTTGAGAGCTAGGTTGTGT+TGG | 0.468840 | 6_1:+20447390 | Msa0878960:five_prime_UTR |
| TAGACATAGCCAGTCGTAAG+AGG | 0.475251 | 6_1:-20450464 | None:intergenic |
| TACTTTCAGAGTTGGAGAAT+CGG | 0.476261 | 6_1:+20448911 | Msa0878960:CDS |
| CTTATGCAAATATATATAAA+GGG | 0.476459 | 6_1:+20453823 | Msa0878960:three_prime_UTR |
| TTCCCATGTTTCAAATAGCA+TGG | 0.482456 | 6_1:+20450697 | Msa0878960:CDS |
| ATGACTAACAAACACTATCA+AGG | 0.484016 | 6_1:-20453574 | None:intergenic |
| CAAAGGGAAAGAGAAAATAA+GGG | 0.486325 | 6_1:-20446808 | None:intergenic |
| TGAAATTGTGATGTTGGGTT+GGG | 0.489680 | 6_1:-20446872 | None:intergenic |
| TTTGTTGCATCTTCATCCAT+AGG | 0.490370 | 6_1:-20453517 | None:intergenic |
| GACATTTACTTGGAAGTGAT+GGG | 0.492218 | 6_1:+20448855 | Msa0878960:CDS |
| ACATTCTTCTCAATCTGTAC+AGG | 0.494590 | 6_1:+20450720 | Msa0878960:CDS |
| GTGTGAAGAATTTGAGAGCT+AGG | 0.495508 | 6_1:+20447381 | Msa0878960:five_prime_UTR |
| CAATTACAATCAAAGCTAGA+AGG | 0.499368 | 6_1:-20449946 | None:intergenic |
| GGAATGATGTGTGTGTTCAT+TGG | 0.500051 | 6_1:+20452687 | Msa0878960:CDS |
| TACGTTACATACCAGGTGAT+TGG | 0.503118 | 6_1:-20449691 | None:intergenic |
| GAAATTGAAATTGTGATGTT+GGG | 0.503872 | 6_1:-20446877 | None:intergenic |
| ATGATGTCATCAAGAATGAA+TGG | 0.511671 | 6_1:+20453427 | Msa0878960:CDS |
| GCATACCCCAAATGGGTTTG+AGG | 0.512283 | 6_1:-20450112 | None:intergenic |
| CTGGCACCTGATGAATCAAA+AGG | 0.517430 | 6_1:+20452720 | Msa0878960:CDS |
| CAAAGAACTATCTTTAGTCT+CGG | 0.521362 | 6_1:-20452831 | None:intergenic |
| GGCAATAGCATACCCCAAAT+GGG | 0.523524 | 6_1:-20450119 | None:intergenic |
| CAGATGACTAGGTTGAATGA+AGG | 0.523979 | 6_1:+20450645 | Msa0878960:intron |
| TCATCGCCGTAGGATTTCCC+AGG | 0.530393 | 6_1:+20453593 | Msa0878960:three_prime_UTR |
| TGGTTGGAGCAAAATACCTA+TGG | 0.531629 | 6_1:+20453501 | Msa0878960:CDS |
| ATGAATGGCTTCAGAGGCAA+TGG | 0.532560 | 6_1:+20453442 | Msa0878960:CDS |
| GAAACTACAGCATATGAAAA+CGG | 0.535353 | 6_1:-20450140 | None:intergenic |
| TATCGATGAGAAATTCTGGT+TGG | 0.535924 | 6_1:+20453485 | Msa0878960:CDS |
| GTCCATGCTATTTGAAACAT+GGG | 0.543572 | 6_1:-20450699 | None:intergenic |
| TGTCCATGCTATTTGAAACA+TGG | 0.547427 | 6_1:-20450700 | None:intergenic |
| AGATATTCTGGTCAAGGCAA+AGG | 0.550087 | 6_1:+20453248 | Msa0878960:CDS |
| CAGTTCTAACCTCTTACGAC+TGG | 0.564450 | 6_1:+20450455 | Msa0878960:intron |
| TCAAGAATGAATGGCTTCAG+AGG | 0.564716 | 6_1:+20453436 | Msa0878960:CDS |
| GATTACAGATATTCTGGTCA+AGG | 0.568159 | 6_1:+20453242 | Msa0878960:CDS |
| ACTGAGAAATAAAAGAAGCA+TGG | 0.568619 | 6_1:-20450520 | None:intergenic |
| TTTCATATGCTGTAGTTTCG+GGG | 0.572383 | 6_1:+20450144 | Msa0878960:CDS |
| AATAAGAATTGCATCGAACA+TGG | 0.577173 | 6_1:-20450673 | None:intergenic |
| GTACAGAAGGAACGCGACAT+TGG | 0.594650 | 6_1:-20449924 | None:intergenic |
| AACAAACACTATCAAGGGCT+AGG | 0.595279 | 6_1:-20453568 | None:intergenic |
| ATAAAGGGTATGCATGATGT+TGG | 0.595603 | 6_1:+20453838 | Msa0878960:three_prime_UTR |
| GTTGGGTTGAATTGAATCGA+AGG | 0.607235 | 6_1:-20446850 | None:intergenic |
| TCAAAGCTAGAAGGTACAGA+AGG | 0.607754 | 6_1:-20449937 | None:intergenic |
| CGAAAACCTGGGAAATCCTA+CGG | 0.614057 | 6_1:-20453599 | None:intergenic |
| TGACTAACAAACACTATCAA+GGG | 0.614771 | 6_1:-20453573 | None:intergenic |
| TTCATATGCTGTAGTTTCGG+GGG | 0.615874 | 6_1:+20450145 | Msa0878960:CDS |
| TGTTTGTTAGTCATCGCCGT+AGG | 0.628588 | 6_1:+20453583 | Msa0878960:three_prime_UTR |
| TGAAATGGCAGGAGACACTA+CGG | 0.632048 | 6_1:-20452858 | None:intergenic |
| AAACACTATCAAGGGCTAGG+AGG | 0.632929 | 6_1:-20453565 | None:intergenic |
| CCATTTCAACAGAAACAAAG+AGG | 0.633660 | 6_1:+20452873 | Msa0878960:CDS |
| TCCAAGAACAATGAAAGCTG+TGG | 0.636557 | 6_1:-20449639 | None:intergenic |
| TTTGGAAATCACCAATCACC+TGG | 0.643242 | 6_1:+20449680 | Msa0878960:CDS |
| TCAGAGGCAATGGACTCGAA+CGG | 0.648762 | 6_1:+20453452 | Msa0878960:CDS |
| ACACAAAGTAAGCGAATGCG+AGG | 0.654505 | 6_1:-20449476 | None:intergenic |
| ACATTTACTTGGAAGTGATG+GGG | 0.654846 | 6_1:+20448856 | Msa0878960:CDS |
| TACCTGAGCAGCATAGCCAA+AGG | 0.659340 | 6_1:-20449067 | None:intergenic |
| TCTCAAATTAGGACACAATG+AGG | 0.672040 | 6_1:+20447546 | Msa0878960:CDS |
| CATGACCTCAAACCCATTTG+GGG | 0.699560 | 6_1:+20450107 | Msa0878960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTCTTTATTTTTTTTTT+TGG | + | chr6_1:20446706-20446725 | Msa0878960:five_prime_UTR | 10.0% |
| !! | AAAATAATTTGATCAAAAAA+GGG | - | chr6_1:20447132-20447151 | None:intergenic | 10.0% |
| !!! | AATTATTTTGTGTTTTTATA+TGG | + | chr6_1:20447143-20447162 | Msa0878960:intron | 10.0% |
| !! | AAAATAATAACTATTTAATG+AGG | + | chr6_1:20447166-20447185 | Msa0878960:intron | 10.0% |
| !! | TTTAATATTACAAATACAAT+GGG | - | chr6_1:20450999-20451018 | None:intergenic | 10.0% |
| !!! | TTTTAATATTACAAATACAA+TGG | - | chr6_1:20451000-20451019 | None:intergenic | 10.0% |
| !! | AAATTGAAATACTATAAATA+GGG | + | chr6_1:20451718-20451737 | Msa0878960:intron | 10.0% |
| !! | TTAATATGAGAAATATTAAA+GGG | + | chr6_1:20452008-20452027 | Msa0878960:intron | 10.0% |
| !!! | ATTATAGATTGAAAATTTTA+GGG | + | chr6_1:20452098-20452117 | Msa0878960:intron | 10.0% |
| !!! | TGTTTTTTCATAATAAATTT+AGG | + | chr6_1:20452597-20452616 | Msa0878960:intron | 10.0% |
| !!! | ATAAATACAAAATTGTTTTA+AGG | + | chr6_1:20452747-20452766 | Msa0878960:intron | 10.0% |
| !!! | AAAATAAAGAAGAATTTTCT+TGG | - | chr6_1:20446700-20446719 | None:intergenic | 15.0% |
| !! | CAAAATAATTTGATCAAAAA+AGG | - | chr6_1:20447133-20447152 | None:intergenic | 15.0% |
| !!! | ATTACATTTTTTAAGGTTTA+TGG | + | chr6_1:20447240-20447259 | Msa0878960:intron | 15.0% |
| !!! | ATTGATTTTCAACATTATAA+GGG | + | chr6_1:20448405-20448424 | Msa0878960:intron | 15.0% |
| !! | ACTTAAAAGAAATAATTAGA+GGG | - | chr6_1:20448770-20448789 | None:intergenic | 15.0% |
| !! | AACTTAAAAGAAATAATTAG+AGG | - | chr6_1:20448771-20448790 | None:intergenic | 15.0% |
| !! | ATCATAAAATTACATATGTT+AGG | - | chr6_1:20449127-20449146 | None:intergenic | 15.0% |
| !!! | ATCAAATGAACTTTTTTTTA+AGG | - | chr6_1:20449359-20449378 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTGAAGCTTAATA+TGG | - | chr6_1:20449792-20449811 | None:intergenic | 15.0% |
| !!! | AATTTTTTTTACCGAAAAAT+AGG | - | chr6_1:20450567-20450586 | None:intergenic | 15.0% |
| !! | TTCTTAAATATATATCCTAA+GGG | - | chr6_1:20450918-20450937 | None:intergenic | 15.0% |
| !! | TGAAATAATTTCAAAATACT+TGG | + | chr6_1:20451094-20451113 | Msa0878960:intron | 15.0% |
| !! | GAAATTGAAATACTATAAAT+AGG | + | chr6_1:20451717-20451736 | Msa0878960:intron | 15.0% |
| !! | AATTGAAATACTATAAATAG+GGG | + | chr6_1:20451719-20451738 | Msa0878960:intron | 15.0% |
| !! | CTTAATATGAGAAATATTAA+AGG | + | chr6_1:20452007-20452026 | Msa0878960:intron | 15.0% |
| !!! | GATTATAGATTGAAAATTTT+AGG | + | chr6_1:20452097-20452116 | Msa0878960:intron | 15.0% |
| !! | ACAAATAATTGAATTATGAA+TGG | - | chr6_1:20453676-20453695 | None:intergenic | 15.0% |
| !! | TCTTATGCAAATATATATAA+AGG | + | chr6_1:20453822-20453841 | Msa0878960:three_prime_UTR | 15.0% |
| !! | CTTATGCAAATATATATAAA+GGG | + | chr6_1:20453823-20453842 | Msa0878960:three_prime_UTR | 15.0% |
| !!! | ATGAGAATTTTGAATTCAAA+GGG | - | chr6_1:20446827-20446846 | None:intergenic | 20.0% |
| !!! | AATGAGAATTTTGAATTCAA+AGG | - | chr6_1:20446828-20446847 | None:intergenic | 20.0% |
| !! | CTGAAATTGAAATTGAAATT+AGG | - | chr6_1:20446910-20446929 | None:intergenic | 20.0% |
| !! | CTAATTTCAATTTCAATTTC+AGG | + | chr6_1:20446908-20446927 | Msa0878960:five_prime_UTR | 20.0% |
| !!! | ATCTAGGTTTTATTTCAATT+GGG | + | chr6_1:20447028-20447047 | Msa0878960:intron | 20.0% |
| !!! | GTACTTGATTACATTTTTTA+AGG | + | chr6_1:20447233-20447252 | Msa0878960:intron | 20.0% |
| !!! | TTTTTAAGGTTTATGGATTT+TGG | + | chr6_1:20447247-20447266 | Msa0878960:intron | 20.0% |
| !!! | TTTATGTTTGTTAATGAAAC+AGG | + | chr6_1:20447283-20447302 | Msa0878960:intron | 20.0% |
| !! | TTGATACAATACAACAATTA+AGG | + | chr6_1:20447342-20447361 | Msa0878960:five_prime_UTR | 20.0% |
| !! | AGAACTTGAAATACTTTAAA+AGG | + | chr6_1:20448054-20448073 | Msa0878960:intron | 20.0% |
| !! | TTATATATAACAGAACATTG+TGG | + | chr6_1:20448115-20448134 | Msa0878960:intron | 20.0% |
| !!! | CATTGATTTTCAACATTATA+AGG | + | chr6_1:20448404-20448423 | Msa0878960:intron | 20.0% |
| !!! | TTATCTTTTGTTCTAAACTA+AGG | + | chr6_1:20448471-20448490 | Msa0878960:intron | 20.0% |
| !!! | TTGTATAAATTTTGATATGC+AGG | + | chr6_1:20449003-20449022 | Msa0878960:intron | 20.0% |
| !! | AATTTCCAAGAAAGAAAAAT+AGG | - | chr6_1:20449032-20449051 | None:intergenic | 20.0% |
| !! | AAATATTAAATTAAGCCACA+AGG | - | chr6_1:20449595-20449614 | None:intergenic | 20.0% |
| !! | TTAATATTTGTCCTTTAAAC+AGG | + | chr6_1:20449606-20449625 | Msa0878960:intron | 20.0% |
| !! | TAATATTTGTCCTTTAAACA+GGG | + | chr6_1:20449607-20449626 | Msa0878960:intron | 20.0% |
| !! | AATTAAATGTAATCATGTGT+CGG | - | chr6_1:20450314-20450333 | None:intergenic | 20.0% |
| !! | TTTCGGTAAAAAAAATTCTT+AGG | + | chr6_1:20450570-20450589 | Msa0878960:intron | 20.0% |
| !!! | TACAGGATTTATATATTTTC+AGG | + | chr6_1:20450737-20450756 | Msa0878960:CDS | 20.0% |
| !!! | TATATATTTTCAGGAATATC+AGG | + | chr6_1:20450746-20450765 | Msa0878960:CDS | 20.0% |
| !! | AGAAGTTAAAATCAAACTTA+TGG | + | chr6_1:20450857-20450876 | Msa0878960:intron | 20.0% |
| !! | GTTCTTAAATATATATCCTA+AGG | - | chr6_1:20450919-20450938 | None:intergenic | 20.0% |
| !! | TAATTTCAAAATACTTGGTT+TGG | + | chr6_1:20451099-20451118 | Msa0878960:intron | 20.0% |
| !! | ATTGAAATACTATAAATAGG+GGG | + | chr6_1:20451720-20451739 | Msa0878960:intron | 20.0% |
| !!! | GAAATATTAAAGGGTATATT+AGG | + | chr6_1:20452017-20452036 | Msa0878960:intron | 20.0% |
| !! | TACTTCATAATAATCAAAGT+TGG | - | chr6_1:20452233-20452252 | None:intergenic | 20.0% |
| !! | GTCTACTTATTAAGAATAAA+CGG | - | chr6_1:20452384-20452403 | None:intergenic | 20.0% |
| !!! | ATATGATAATTGTTCACTTT+TGG | - | chr6_1:20452921-20452940 | None:intergenic | 20.0% |
| !! | TATATCAGATAAAACAGTAT+TGG | - | chr6_1:20453152-20453171 | None:intergenic | 20.0% |
| !!! | AATACTGTTTTATCTGATAT+AGG | + | chr6_1:20453151-20453170 | Msa0878960:intron | 20.0% |
| !! | AAAAAATAAATCGAAAACCT+GGG | - | chr6_1:20453613-20453632 | None:intergenic | 20.0% |
| !! | AAAAAAATAAATCGAAAACC+TGG | - | chr6_1:20453614-20453633 | None:intergenic | 20.0% |
| !! | ACACCAATCATTAAAAAAAT+CGG | - | chr6_1:20453639-20453658 | None:intergenic | 20.0% |
| !!! | TTTTTATCCTTTTTTCCTTA+GGG | - | chr6_1:20453725-20453744 | None:intergenic | 20.0% |
| !!! | TTTTTTATCCTTTTTTCCTT+AGG | - | chr6_1:20453726-20453745 | None:intergenic | 20.0% |
| ! | GAAATTGAAATTGTGATGTT+GGG | - | chr6_1:20446880-20446899 | None:intergenic | 25.0% |
| ! | TGAAATTGAAATTGTGATGT+TGG | - | chr6_1:20446881-20446900 | None:intergenic | 25.0% |
| !!! | GATCTAGGTTTTATTTCAAT+TGG | + | chr6_1:20447027-20447046 | Msa0878960:intron | 25.0% |
| ! | TTATAGCAATACTACCAAAA+AGG | - | chr6_1:20447510-20447529 | None:intergenic | 25.0% |
| ! | GTAGTATTGCTATAAACTTT+GGG | + | chr6_1:20447515-20447534 | Msa0878960:CDS | 25.0% |
| !! | CTTTTATGTATGTATATGCA+CGG | + | chr6_1:20447614-20447633 | Msa0878960:intron | 25.0% |
| ! | TAAAATGACAGAGAAATAGA+AGG | + | chr6_1:20447699-20447718 | Msa0878960:intron | 25.0% |
| ! | AAAATTCCCTTTAATTCGAA+CGG | - | chr6_1:20447789-20447808 | None:intergenic | 25.0% |
| ! | TTGTAAGCTGAAATCTTATA+AGG | - | chr6_1:20448216-20448235 | None:intergenic | 25.0% |
| ! | TAATTCTCGAGTTAATCAAT+TGG | + | chr6_1:20448238-20448257 | Msa0878960:intron | 25.0% |
| ! | TGCAGATTGCAAATTAATAT+TGG | - | chr6_1:20448716-20448735 | None:intergenic | 25.0% |
| !! | CAACTCTGAAAGTATATAAT+AGG | - | chr6_1:20448905-20448924 | None:intergenic | 25.0% |
| ! | CTATTATATACTTTCAGAGT+TGG | + | chr6_1:20448903-20448922 | Msa0878960:CDS | 25.0% |
| ! | TGTAATTGCATATATGTATG+TGG | + | chr6_1:20448939-20448958 | Msa0878960:intron | 25.0% |
| !!! | GTCGTTTTCTTAAAATACTA+TGG | + | chr6_1:20449285-20449304 | Msa0878960:intron | 25.0% |
| ! | TTACTTTGTGTTGAACAAAA+TGG | + | chr6_1:20449488-20449507 | Msa0878960:CDS | 25.0% |
| !! | TTACATTGGTAGAACAATTT+TGG | - | chr6_1:20449570-20449589 | None:intergenic | 25.0% |
| !!! | ATATGAACATTGATTTCACA+AGG | - | chr6_1:20449752-20449771 | None:intergenic | 25.0% |
| ! | AGAAAAAATGCTCATTTCAA+TGG | + | chr6_1:20449830-20449849 | Msa0878960:intron | 25.0% |
| !! | AGAGTAGACTTATGAATTTT+AGG | - | chr6_1:20450941-20450960 | None:intergenic | 25.0% |
| ! | AAATTATTTCAGCGATGATA+TGG | - | chr6_1:20451085-20451104 | None:intergenic | 25.0% |
| ! | ATATGCAATTACATGTAATC+AGG | + | chr6_1:20451917-20451936 | Msa0878960:intron | 25.0% |
| !! | TTAGGAAAGTACACTATTAA+AGG | + | chr6_1:20452035-20452054 | Msa0878960:intron | 25.0% |
| !! | TAGGAAAGTACACTATTAAA+GGG | + | chr6_1:20452036-20452055 | Msa0878960:intron | 25.0% |
| ! | CTAAATTCATTGAGTTAACT+AGG | + | chr6_1:20452075-20452094 | Msa0878960:intron | 25.0% |
| !!! | AAAATTTTAGGGATGCAAAT+GGG | + | chr6_1:20452109-20452128 | Msa0878960:intron | 25.0% |
| !! | AGGATTTTTCTAATGAATAG+CGG | + | chr6_1:20452284-20452303 | Msa0878960:intron | 25.0% |
| ! | ATTAAGAATAAACGGAGTTA+TGG | - | chr6_1:20452376-20452395 | None:intergenic | 25.0% |
| ! | ATAAAAGTTGTAGAAGTGAT+AGG | - | chr6_1:20452519-20452538 | None:intergenic | 25.0% |
| !!! | ATAATACCTTTTGATTCATC+AGG | - | chr6_1:20452729-20452748 | None:intergenic | 25.0% |
| ! | ATATTAACCTTTGAATACCT+CGG | - | chr6_1:20452785-20452804 | None:intergenic | 25.0% |
| !! | AATCATTTAGTTTCCTTTCA+GGG | - | chr6_1:20452955-20452974 | None:intergenic | 25.0% |
| ! | GATAAAGATTACAGATATTC+TGG | + | chr6_1:20453236-20453255 | Msa0878960:CDS | 25.0% |
| !! | ATTTTATCGATGAGAAATTC+TGG | + | chr6_1:20453481-20453500 | Msa0878960:CDS | 25.0% |
| !!! | TCTCCGATTTTTTTAATGAT+TGG | + | chr6_1:20453633-20453652 | Msa0878960:three_prime_UTR | 25.0% |
| !! | TTTTATCCTTTTTTCCTTAG+GGG | - | chr6_1:20453724-20453743 | None:intergenic | 25.0% |
| !! | TGCATAAGAAGTACATTTAA+AGG | - | chr6_1:20453811-20453830 | None:intergenic | 25.0% |
| ! | ATTTTCTTGGTCCAAAAAAG+AGG | - | chr6_1:20446687-20446706 | None:intergenic | 30.0% |
| CAAAGGGAAAGAGAAAATAA+GGG | - | chr6_1:20446811-20446830 | None:intergenic | 30.0% | |
| TCAAAGGGAAAGAGAAAATA+AGG | - | chr6_1:20446812-20446831 | None:intergenic | 30.0% | |
| CATACACAATGCAATTTCTT+TGG | + | chr6_1:20446944-20446963 | Msa0878960:intron | 30.0% | |
| CCTAGATCTACTAAATTTGT+AGG | - | chr6_1:20447015-20447034 | None:intergenic | 30.0% | |
| CCTACAAATTTAGTAGATCT+AGG | + | chr6_1:20447012-20447031 | Msa0878960:intron | 30.0% | |
| !!! | TTATAGCGTTGTTTTGAAAC+TGG | + | chr6_1:20447307-20447326 | Msa0878960:five_prime_UTR | 30.0% |
| ! | GTACAACATCTTTTATCCAT+GGG | + | chr6_1:20447457-20447476 | Msa0878960:exon | 30.0% |
| ! | TACAACATCTTTTATCCATG+GGG | + | chr6_1:20447458-20447477 | Msa0878960:exon | 30.0% |
| GGTAGTATTGCTATAAACTT+TGG | + | chr6_1:20447514-20447533 | Msa0878960:CDS | 30.0% | |
| !!! | TTCTCTGTCATTTTATACTG+TGG | - | chr6_1:20447694-20447713 | None:intergenic | 30.0% |
| AAAACTACCGTTCGAATTAA+AGG | + | chr6_1:20447779-20447798 | Msa0878960:intron | 30.0% | |
| AAACTACCGTTCGAATTAAA+GGG | + | chr6_1:20447780-20447799 | Msa0878960:intron | 30.0% | |
| ACATATTGTAGAAACGATGA+TGG | + | chr6_1:20447935-20447954 | Msa0878960:intron | 30.0% | |
| CATATTGTAGAAACGATGAT+GGG | + | chr6_1:20447936-20447955 | Msa0878960:intron | 30.0% | |
| AAACTCAGTATAGGTTGTTT+GGG | + | chr6_1:20447959-20447978 | Msa0878960:intron | 30.0% | |
| !! | CAGATAGAGAGTATTGAAAT+TGG | + | chr6_1:20448018-20448037 | Msa0878960:intron | 30.0% |
| !! | TAGAGAGTATTGAAATTGGT+AGG | + | chr6_1:20448022-20448041 | Msa0878960:intron | 30.0% |
| !! | AGAGAGTATTGAAATTGGTA+GGG | + | chr6_1:20448023-20448042 | Msa0878960:intron | 30.0% |
| ACTGTTAAGACAGAGATTAT+TGG | + | chr6_1:20448078-20448097 | Msa0878960:intron | 30.0% | |
| CTGTTAAGACAGAGATTATT+GGG | + | chr6_1:20448079-20448098 | Msa0878960:intron | 30.0% | |
| GATGTAAGAAGATACAAATG+AGG | - | chr6_1:20448284-20448303 | None:intergenic | 30.0% | |
| TGATAGCAATGTTGTGAATA+AGG | + | chr6_1:20448312-20448331 | Msa0878960:intron | 30.0% | |
| ! | TGAGGTATATCTTTTGGATT+AGG | + | chr6_1:20448338-20448357 | Msa0878960:intron | 30.0% |
| !! | GTATATCTTTTGGATTAGGA+GGG | + | chr6_1:20448342-20448361 | Msa0878960:intron | 30.0% |
| ! | CAACATTATAAGGGTATGTT+TGG | + | chr6_1:20448414-20448433 | Msa0878960:intron | 30.0% |
| ! | ATTATAAGGGTATGTTTGGA+TGG | + | chr6_1:20448418-20448437 | Msa0878960:intron | 30.0% |
| TATGTTTGGATGGATAGTTT+CGG | - | chr6_1:20448612-20448631 | None:intergenic | 30.0% | |
| ! | CTTTACTTTAAGGGTATGTT+TGG | - | chr6_1:20448626-20448645 | None:intergenic | 30.0% |
| GTTTCAGTGCTTTACTTTAA+GGG | - | chr6_1:20448635-20448654 | None:intergenic | 30.0% | |
| TGTTTCAGTGCTTTACTTTA+AGG | - | chr6_1:20448636-20448655 | None:intergenic | 30.0% | |
| CACATGACATGAACAAAAAT+CGG | - | chr6_1:20448680-20448699 | None:intergenic | 30.0% | |
| GTTGCAATATCAAATTAGTC+TGG | + | chr6_1:20448788-20448807 | Msa0878960:intron | 30.0% | |
| AAAAACAAGAATCAGCAACA+TGG | - | chr6_1:20448981-20449000 | None:intergenic | 30.0% | |
| !!! | ATGTTGCTGATTCTTGTTTT+TGG | + | chr6_1:20448980-20448999 | Msa0878960:intron | 30.0% |
| !! | GGTATCCTATTTTTCTTTCT+TGG | + | chr6_1:20449024-20449043 | Msa0878960:intron | 30.0% |
| TGCCTTAATTTCATTTCCTT+TGG | + | chr6_1:20449051-20449070 | Msa0878960:CDS | 30.0% | |
| AGCCAAAGGAAATGAAATTA+AGG | - | chr6_1:20449056-20449075 | None:intergenic | 30.0% | |
| ! | AAAACATCCAATAAGTATCG+TGG | - | chr6_1:20449103-20449122 | None:intergenic | 30.0% |
| TTGAATGTATTCACATGTGT+CGG | - | chr6_1:20449261-20449280 | None:intergenic | 30.0% | |
| ACATAGGTAATCAGAAGAAA+AGG | - | chr6_1:20449397-20449416 | None:intergenic | 30.0% | |
| !! | GTAGAACAATTTTGGTGAAA+AGG | - | chr6_1:20449562-20449581 | None:intergenic | 30.0% |
| !!! | AATGTTTTTCTAGTTGCGTT+TGG | + | chr6_1:20449662-20449681 | Msa0878960:CDS | 30.0% |
| TATGAAATACGTTACATACC+AGG | - | chr6_1:20449701-20449720 | None:intergenic | 30.0% | |
| GTGCAAACTAATTTATGTGA+CGG | + | chr6_1:20449852-20449871 | Msa0878960:intron | 30.0% | |
| CAATTACAATCAAAGCTAGA+AGG | - | chr6_1:20449949-20449968 | None:intergenic | 30.0% | |
| ATCACTCCATTTACAAGTAA+CGG | + | chr6_1:20449978-20449997 | Msa0878960:intron | 30.0% | |
| GATTAAAATGTGAAATGTGC+AGG | + | chr6_1:20450054-20450073 | Msa0878960:intron | 30.0% | |
| GAAACTACAGCATATGAAAA+CGG | - | chr6_1:20450143-20450162 | None:intergenic | 30.0% | |
| ! | GTTTTCATATGCTGTAGTTT+CGG | + | chr6_1:20450142-20450161 | Msa0878960:CDS | 30.0% |
| ! | TTTTCATATGCTGTAGTTTC+GGG | + | chr6_1:20450143-20450162 | Msa0878960:CDS | 30.0% |
| ACTGTGTACTTTATTCCTAA+TGG | + | chr6_1:20450418-20450437 | Msa0878960:intron | 30.0% | |
| ACTGAGAAATAAAAGAAGCA+TGG | - | chr6_1:20450523-20450542 | None:intergenic | 30.0% | |
| ACATCTGCAAACATTTATGA+AGG | - | chr6_1:20450597-20450616 | None:intergenic | 30.0% | |
| ! | TTCTAATTTTGCAGATGACT+AGG | + | chr6_1:20450634-20450653 | Msa0878960:intron | 30.0% |
| AATAAGAATTGCATCGAACA+TGG | - | chr6_1:20450676-20450695 | None:intergenic | 30.0% | |
| TCATAAGTCTACTCTTACTT+TGG | + | chr6_1:20450946-20450965 | Msa0878960:intron | 30.0% | |
| GTAGTTTCTGAGTAAGAATT+CGG | + | chr6_1:20451262-20451281 | Msa0878960:intron | 30.0% | |
| !! | CTAATGGATTGTAAAAACGA+GGG | - | chr6_1:20451410-20451429 | None:intergenic | 30.0% |
| !! | TCTAATGGATTGTAAAAACG+AGG | - | chr6_1:20451411-20451430 | None:intergenic | 30.0% |
| !! | TCGTTTTTACAATCCATTAG+AGG | + | chr6_1:20451410-20451429 | Msa0878960:intron | 30.0% |
| !! | CTTATATGTTGCTATTTCCT+GGG | + | chr6_1:20451457-20451476 | Msa0878960:intron | 30.0% |
| ! | GGAAAATAAGGTCTTTTGTA+AGG | - | chr6_1:20451589-20451608 | None:intergenic | 30.0% |
| !! | GAAAATTTTAGGGATGCAAA+TGG | + | chr6_1:20452108-20452127 | Msa0878960:intron | 30.0% |
| !!! | CTTTGTAAGTTTTGTTCAGA+TGG | + | chr6_1:20452201-20452220 | Msa0878960:intron | 30.0% |
| TTAATAAGTAGACATCCTTC+CGG | + | chr6_1:20452391-20452410 | Msa0878960:intron | 30.0% | |
| AACCTTATCTTCATGAAAAC+AGG | + | chr6_1:20452629-20452648 | Msa0878960:intron | 30.0% | |
| ! | TACCTGTTTTCATGAAGATA+AGG | - | chr6_1:20452634-20452653 | None:intergenic | 30.0% |
| AGGACAACAATGTTTATACT+TGG | + | chr6_1:20452666-20452685 | Msa0878960:CDS | 30.0% | |
| ! | TAAGGTTTTACTATAAACCG+AGG | + | chr6_1:20452765-20452784 | Msa0878960:intron | 30.0% |
| CAAAGAACTATCTTTAGTCT+CGG | - | chr6_1:20452834-20452853 | None:intergenic | 30.0% | |
| ! | CAATCATTTAGTTTCCTTTC+AGG | - | chr6_1:20452956-20452975 | None:intergenic | 30.0% |
| ! | TAAGCACATGTTGCTTATTA+TGG | + | chr6_1:20453110-20453129 | Msa0878960:intron | 30.0% |
| ! | AAGCACATGTTGCTTATTAT+GGG | + | chr6_1:20453111-20453130 | Msa0878960:intron | 30.0% |
| ! | CAAAGGTATATCATTATGAC+TGG | + | chr6_1:20453265-20453284 | Msa0878960:intron | 30.0% |
| ! | TTCATTCTTGATGACATCAT+TGG | - | chr6_1:20453427-20453446 | None:intergenic | 30.0% |
| ATGATGTCATCAAGAATGAA+TGG | + | chr6_1:20453427-20453446 | Msa0878960:CDS | 30.0% | |
| TGACTAACAAACACTATCAA+GGG | - | chr6_1:20453576-20453595 | None:intergenic | 30.0% | |
| ATGACTAACAAACACTATCA+AGG | - | chr6_1:20453577-20453596 | None:intergenic | 30.0% | |
| !!! | TTTATCCTTTTTTCCTTAGG+GGG | - | chr6_1:20453723-20453742 | None:intergenic | 30.0% |
| AGGAAAGAGAGAAGAAGTTA+TGG | - | chr6_1:20446645-20446664 | None:intergenic | 35.0% | |
| ! | GTTAGTTTCGAGAAGAAGAA+AGG | - | chr6_1:20446665-20446684 | None:intergenic | 35.0% |
| !!! | CTCGAAACTAACCTCTTTTT+TGG | + | chr6_1:20446673-20446692 | Msa0878960:intron | 35.0% |
| TGAAATTGTGATGTTGGGTT+GGG | - | chr6_1:20446875-20446894 | None:intergenic | 35.0% | |
| TTGAAATTGTGATGTTGGGT+TGG | - | chr6_1:20446876-20446895 | None:intergenic | 35.0% | |
| ! | ATCAAATTTTGTGCTGCATG+TGG | + | chr6_1:20447421-20447440 | Msa0878960:five_prime_UTR | 35.0% |
| ! | GGTACAACATCTTTTATCCA+TGG | + | chr6_1:20447456-20447475 | Msa0878960:exon | 35.0% |
| ! | ACAACATCTTTTATCCATGG+GGG | + | chr6_1:20447459-20447478 | Msa0878960:exon | 35.0% |
| GTGTCCTAATTTGAGAAGAT+TGG | - | chr6_1:20447542-20447561 | None:intergenic | 35.0% | |
| TCTCAAATTAGGACACAATG+AGG | + | chr6_1:20447546-20447565 | Msa0878960:CDS | 35.0% | |
| AATTAGGACACAATGAGGTA+TGG | + | chr6_1:20447551-20447570 | Msa0878960:intron | 35.0% | |
| ATCATATACCACAAGTGACA+CGG | + | chr6_1:20447652-20447671 | Msa0878960:intron | 35.0% | |
| AATGACAGAGAAATAGAAGG+AGG | + | chr6_1:20447702-20447721 | Msa0878960:intron | 35.0% | |
| ! | TTCTCAGGTGTTTTATGTGA+TGG | + | chr6_1:20447753-20447772 | Msa0878960:intron | 35.0% |
| TATTGAGACGAATATTGCGT+TGG | + | chr6_1:20447884-20447903 | Msa0878960:intron | 35.0% | |
| ! | TAAGACTAGACTAGAGTGTT+GGG | + | chr6_1:20447907-20447926 | Msa0878960:intron | 35.0% |
| GAAACTCAGTATAGGTTGTT+TGG | + | chr6_1:20447958-20447977 | Msa0878960:intron | 35.0% | |
| ! | TGATCGACTCTACTTTCTAT+AGG | - | chr6_1:20448000-20448019 | None:intergenic | 35.0% |
| !! | GAGAGTATTGAAATTGGTAG+GGG | + | chr6_1:20448024-20448043 | Msa0878960:intron | 35.0% |
| TAAGACAGAGATTATTGGGT+TGG | + | chr6_1:20448083-20448102 | Msa0878960:intron | 35.0% | |
| TTGATGTAACCAACCTTACT+TGG | + | chr6_1:20448148-20448167 | Msa0878960:intron | 35.0% | |
| !! | AAGTCTTATTCCACCAAGTA+AGG | - | chr6_1:20448164-20448183 | None:intergenic | 35.0% |
| ! | TTACTTGGTGGAATAAGACT+TGG | + | chr6_1:20448163-20448182 | Msa0878960:intron | 35.0% |
| !! | GGTATATCTTTTGGATTAGG+AGG | + | chr6_1:20448341-20448360 | Msa0878960:intron | 35.0% |
| ! | ATGTTTGGATGGAGGATTTT+TGG | + | chr6_1:20448429-20448448 | Msa0878960:intron | 35.0% |
| ! | TGTTTGGATGGAGGATTTTT+GGG | + | chr6_1:20448430-20448449 | Msa0878960:intron | 35.0% |
| ! | ACTTTAAGGGTATGTTTGGA+TGG | - | chr6_1:20448622-20448641 | None:intergenic | 35.0% |
| TGACATGAACAAAAATCGGT+TGG | - | chr6_1:20448676-20448695 | None:intergenic | 35.0% | |
| CAGAGAGAAAGACATTTACT+TGG | + | chr6_1:20448845-20448864 | Msa0878960:intron | 35.0% | |
| AGACATTTACTTGGAAGTGA+TGG | + | chr6_1:20448854-20448873 | Msa0878960:CDS | 35.0% | |
| GACATTTACTTGGAAGTGAT+GGG | + | chr6_1:20448855-20448874 | Msa0878960:CDS | 35.0% | |
| ACATTTACTTGGAAGTGATG+GGG | + | chr6_1:20448856-20448875 | Msa0878960:CDS | 35.0% | |
| TACTTTCAGAGTTGGAGAAT+CGG | + | chr6_1:20448911-20448930 | Msa0878960:CDS | 35.0% | |
| TTCCATTCCACGATACTTAT+TGG | + | chr6_1:20449093-20449112 | Msa0878960:intron | 35.0% | |
| ! | ATCCAATAAGTATCGTGGAA+TGG | - | chr6_1:20449098-20449117 | None:intergenic | 35.0% |
| TCTACCAATGTAAATCCTTG+TGG | + | chr6_1:20449577-20449596 | Msa0878960:intron | 35.0% | |
| TAAGCCACAAGGATTTACAT+TGG | - | chr6_1:20449584-20449603 | None:intergenic | 35.0% | |
| TTGTCCTTTAAACAGGGTAT+TGG | + | chr6_1:20449613-20449632 | Msa0878960:intron | 35.0% | |
| TCTTAGCCGTTACTTGTAAA+TGG | - | chr6_1:20449987-20450006 | None:intergenic | 35.0% | |
| TTTCATATGCTGTAGTTTCG+GGG | + | chr6_1:20450144-20450163 | Msa0878960:CDS | 35.0% | |
| ! | TCCTAATGGCAACTTCATTT+TGG | + | chr6_1:20450432-20450451 | Msa0878960:intron | 35.0% |
| !! | CTTTTATTTCTCAGTACTGC+TGG | + | chr6_1:20450528-20450547 | Msa0878960:CDS | 35.0% |
| !! | TTTGGGTAAGGCCTATTTTT+CGG | + | chr6_1:20450553-20450572 | Msa0878960:intron | 35.0% |
| TTCCCATGTTTCAAATAGCA+TGG | + | chr6_1:20450697-20450716 | Msa0878960:CDS | 35.0% | |
| ! | GTCCATGCTATTTGAAACAT+GGG | - | chr6_1:20450702-20450721 | None:intergenic | 35.0% |
| ! | TGTCCATGCTATTTGAAACA+TGG | - | chr6_1:20450703-20450722 | None:intergenic | 35.0% |
| ACATTCTTCTCAATCTGTAC+AGG | + | chr6_1:20450720-20450739 | Msa0878960:CDS | 35.0% | |
| CTACTCCTACTTTGATGAAA+TGG | + | chr6_1:20450889-20450908 | Msa0878960:intron | 35.0% | |
| !! | ACTTGGTTTGGTAGTGTTAT+TGG | + | chr6_1:20451111-20451130 | Msa0878960:intron | 35.0% |
| TCTAGTATTCCCCAACAAAT+AGG | + | chr6_1:20451216-20451235 | Msa0878960:intron | 35.0% | |
| CTAGTATTCCCCAACAAATA+GGG | + | chr6_1:20451217-20451236 | Msa0878960:intron | 35.0% | |
| TAGTATTCCCCAACAAATAG+GGG | + | chr6_1:20451218-20451237 | Msa0878960:intron | 35.0% | |
| AATTCGGCTAGAAGAGAATA+TGG | + | chr6_1:20451278-20451297 | Msa0878960:intron | 35.0% | |
| ATTCGGCTAGAAGAGAATAT+GGG | + | chr6_1:20451279-20451298 | Msa0878960:intron | 35.0% | |
| !! | CTCAACTTGCTATAACAGTA+TGG | - | chr6_1:20451349-20451368 | None:intergenic | 35.0% |
| CATACTGTTATAGCAAGTTG+AGG | + | chr6_1:20451347-20451366 | Msa0878960:intron | 35.0% | |
| !! | GCTTATATGTTGCTATTTCC+TGG | + | chr6_1:20451456-20451475 | Msa0878960:intron | 35.0% |
| TGATTAAATCGGCATATCTC+CGG | + | chr6_1:20451534-20451553 | Msa0878960:intron | 35.0% | |
| ! | ACAACTATGGGAATCTTTTG+AGG | + | chr6_1:20451563-20451582 | Msa0878960:intron | 35.0% |
| !!! | AAGACCTTATTTTCCTCTTG+AGG | + | chr6_1:20451594-20451613 | Msa0878960:intron | 35.0% |
| TTGTCCTCAAGAGGAAAATA+AGG | - | chr6_1:20451601-20451620 | None:intergenic | 35.0% | |
| ! | TTATTTTCCTCTTGAGGACA+AGG | + | chr6_1:20451600-20451619 | Msa0878960:intron | 35.0% |
| !! | GAGAAGTACTTATAGGTACA+CGG | + | chr6_1:20451636-20451655 | Msa0878960:intron | 35.0% |
| AGAGTAGGTAGTTAGTTACT+GGG | + | chr6_1:20451749-20451768 | Msa0878960:intron | 35.0% | |
| GTTAGGAAAAGAGATAACAC+AGG | + | chr6_1:20451782-20451801 | Msa0878960:intron | 35.0% | |
| AAAACCATACATTCAGACCT+GGG | - | chr6_1:20451822-20451841 | None:intergenic | 35.0% | |
| ACAGAGATGATAGAAGGATA+GGG | - | chr6_1:20451848-20451867 | None:intergenic | 35.0% | |
| AACAGAGATGATAGAAGGAT+AGG | - | chr6_1:20451849-20451868 | None:intergenic | 35.0% | |
| CGAAAAACAGAGATGATAGA+AGG | - | chr6_1:20451854-20451873 | None:intergenic | 35.0% | |
| CCAGTGTATTGTGTATATCT+TGG | - | chr6_1:20451943-20451962 | None:intergenic | 35.0% | |
| CCAAGATATACACAATACAC+TGG | + | chr6_1:20451940-20451959 | Msa0878960:intron | 35.0% | |
| CAGTTAAGAATCATCATGCA+AGG | - | chr6_1:20452161-20452180 | None:intergenic | 35.0% | |
| ! | TTAACAGAAAGCATACTAGG+AGG | - | chr6_1:20452419-20452438 | None:intergenic | 35.0% |
| TCCTAGTATGCTTTCTGTTA+AGG | + | chr6_1:20452418-20452437 | Msa0878960:intron | 35.0% | |
| ! | TCCTTAACAGAAAGCATACT+AGG | - | chr6_1:20452422-20452441 | None:intergenic | 35.0% |
| AACAGGTATTTGACACGTTA+AGG | + | chr6_1:20452646-20452665 | Msa0878960:intron | 35.0% | |
| GTTCATTGGTATTTCTTTGC+TGG | + | chr6_1:20452701-20452720 | Msa0878960:CDS | 35.0% | |
| ! | CTATAAACCGAGGTATTCAA+AGG | + | chr6_1:20452775-20452794 | Msa0878960:intron | 35.0% |
| CGAGACTAAAGATAGTTCTT+TGG | + | chr6_1:20452832-20452851 | Msa0878960:CDS | 35.0% | |
| !! | TTTGTTTCTGTTGAAATGGC+AGG | - | chr6_1:20452872-20452891 | None:intergenic | 35.0% |
| !! | CCTCTTTGTTTCTGTTGAAA+TGG | - | chr6_1:20452876-20452895 | None:intergenic | 35.0% |
| CCATTTCAACAGAAACAAAG+AGG | + | chr6_1:20452873-20452892 | Msa0878960:CDS | 35.0% | |
| ATTTAAAAGACGTCCCTGAA+AGG | + | chr6_1:20452939-20452958 | Msa0878960:intron | 35.0% | |
| GATTACAGATATTCTGGTCA+AGG | + | chr6_1:20453242-20453261 | Msa0878960:CDS | 35.0% | |
| CTTATCGAAACTGATAGCAT+CGG | - | chr6_1:20453309-20453328 | None:intergenic | 35.0% | |
| TCTGCAAATAGACAGAAACT+TGG | - | chr6_1:20453339-20453358 | None:intergenic | 35.0% | |
| TATCGATGAGAAATTCTGGT+TGG | + | chr6_1:20453485-20453504 | Msa0878960:CDS | 35.0% | |
| TTTGTTGCATCTTCATCCAT+AGG | - | chr6_1:20453520-20453539 | None:intergenic | 35.0% | |
| !!! | TTATCCTTTTTTCCTTAGGG+GGG | - | chr6_1:20453722-20453741 | None:intergenic | 35.0% |
| ! | ATAAAGGGTATGCATGATGT+TGG | + | chr6_1:20453838-20453857 | Msa0878960:three_prime_UTR | 35.0% |
| !! | GTTGGGTTGAATTGAATCGA+AGG | - | chr6_1:20446853-20446872 | None:intergenic | 40.0% |
| !!! | GTTTTGAAACTGGTTTCGCT+TGG | + | chr6_1:20447317-20447336 | Msa0878960:five_prime_UTR | 40.0% |
| GTGTGAAGAATTTGAGAGCT+AGG | + | chr6_1:20447381-20447400 | Msa0878960:five_prime_UTR | 40.0% | |
| ATTTGAGAGCTAGGTTGTGT+TGG | + | chr6_1:20447390-20447409 | Msa0878960:five_prime_UTR | 40.0% | |
| ! | GGAGCTTTCATCAACCTTTT+TGG | + | chr6_1:20447493-20447512 | Msa0878960:CDS | 40.0% |
| GGGACCAATCTTCTCAAATT+AGG | + | chr6_1:20447535-20447554 | Msa0878960:CDS | 40.0% | |
| TCATATACCACAAGTGACAC+GGG | + | chr6_1:20447653-20447672 | Msa0878960:intron | 40.0% | |
| ATCATCGAGTTCAAGCTGAA+TGG | + | chr6_1:20447730-20447749 | Msa0878960:intron | 40.0% | |
| GTTCGCAATGTTGAATGAGA+CGG | + | chr6_1:20447827-20447846 | Msa0878960:intron | 40.0% | |
| GTAAGACTAGACTAGAGTGT+TGG | + | chr6_1:20447906-20447925 | Msa0878960:intron | 40.0% | |
| !! | GATGATGGGAAACTCAGTAT+AGG | + | chr6_1:20447950-20447969 | Msa0878960:intron | 40.0% |
| GTATAGGTTGTTTGGGCATT+TGG | + | chr6_1:20447966-20447985 | Msa0878960:intron | 40.0% | |
| ATGTAACCAACCTTACTTGG+TGG | + | chr6_1:20448151-20448170 | Msa0878960:intron | 40.0% | |
| CTTATTCCACCAAGTAAGGT+TGG | - | chr6_1:20448160-20448179 | None:intergenic | 40.0% | |
| ! | GTGGAATAAGACTTGGTTGT+TGG | + | chr6_1:20448170-20448189 | Msa0878960:intron | 40.0% |
| ! | GAATAAGACTTGGTTGTTGG+TGG | + | chr6_1:20448173-20448192 | Msa0878960:intron | 40.0% |
| !! | ATGTTGTGAATAAGGTGCTG+AGG | + | chr6_1:20448320-20448339 | Msa0878960:intron | 40.0% |
| !!! | AGGTGCTGAGGTATATCTTT+TGG | + | chr6_1:20448332-20448351 | Msa0878960:intron | 40.0% |
| ! | ATAAGGGTATGTTTGGATGG+AGG | + | chr6_1:20448421-20448440 | Msa0878960:intron | 40.0% |
| !! | ATGGAGGATTTTTGGGAGTA+GGG | + | chr6_1:20448437-20448456 | Msa0878960:intron | 40.0% |
| ATGCCTTCGATCAGAAGATT+TGG | - | chr6_1:20449206-20449225 | None:intergenic | 40.0% | |
| GCAACCAATACCCTGTTTAA+AGG | - | chr6_1:20449620-20449639 | None:intergenic | 40.0% | |
| TCCAAGAACAATGAAAGCTG+TGG | - | chr6_1:20449642-20449661 | None:intergenic | 40.0% | |
| TTTGGAAATCACCAATCACC+TGG | + | chr6_1:20449680-20449699 | Msa0878960:CDS | 40.0% | |
| TACGTTACATACCAGGTGAT+TGG | - | chr6_1:20449694-20449713 | None:intergenic | 40.0% | |
| TATTTCTCTGTCAACTGCTC+TGG | - | chr6_1:20449902-20449921 | None:intergenic | 40.0% | |
| ! | TCAAAGCTAGAAGGTACAGA+AGG | - | chr6_1:20449940-20449959 | None:intergenic | 40.0% |
| !! | GAACTTCTGCTTGCTATATC+AGG | + | chr6_1:20450083-20450102 | Msa0878960:CDS | 40.0% |
| ACATGACCTCAAACCCATTT+GGG | + | chr6_1:20450106-20450125 | Msa0878960:CDS | 40.0% | |
| TTCATATGCTGTAGTTTCGG+GGG | + | chr6_1:20450145-20450164 | Msa0878960:CDS | 40.0% | |
| GTAGCAGACTTACAGTGATT+TGG | - | chr6_1:20450198-20450217 | None:intergenic | 40.0% | |
| ! | ACACTTTCCATCAAAGGTGT+CGG | - | chr6_1:20450257-20450276 | None:intergenic | 40.0% |
| ! | ATGTAATCATGTGTCGGTGT+CGG | - | chr6_1:20450308-20450327 | None:intergenic | 40.0% |
| GCCAAAATGAAGTTGCCATT+AGG | - | chr6_1:20450436-20450455 | None:intergenic | 40.0% | |
| ! | TTACGACTGGCTATGTCTAA+TGG | + | chr6_1:20450468-20450487 | Msa0878960:CDS | 40.0% |
| ! | TTCTCAGTACTGCTGGATTT+TGG | + | chr6_1:20450535-20450554 | Msa0878960:CDS | 40.0% |
| ! | TCTCAGTACTGCTGGATTTT+GGG | + | chr6_1:20450536-20450555 | Msa0878960:CDS | 40.0% |
| ! | CAGATGACTAGGTTGAATGA+AGG | + | chr6_1:20450645-20450664 | Msa0878960:intron | 40.0% |
| TTTATAGCTTCTCCTTGCCA+CGG | + | chr6_1:20450826-20450845 | Msa0878960:intron | 40.0% | |
| GGAGTCCATTTCATCAAAGT+AGG | - | chr6_1:20450897-20450916 | None:intergenic | 40.0% | |
| ! | TTGATGAAATGGACTCCCTT+AGG | + | chr6_1:20450900-20450919 | Msa0878960:intron | 40.0% |
| ! | GGTAGTGTTATTGGTAGATG+TGG | + | chr6_1:20451120-20451139 | Msa0878960:intron | 40.0% |
| TAGATGTGGCAGTTACGAAA+GGG | + | chr6_1:20451134-20451153 | Msa0878960:intron | 40.0% | |
| AGTATTCCCCAACAAATAGG+GGG | + | chr6_1:20451219-20451238 | Msa0878960:intron | 40.0% | |
| TTCGGCTAGAAGAGAATATG+GGG | + | chr6_1:20451280-20451299 | Msa0878960:intron | 40.0% | |
| ! | AGGAAGTATACACACAGACA+TGG | - | chr6_1:20451321-20451340 | None:intergenic | 40.0% |
| TGTCTGTGTGTATACTTCCT+AGG | + | chr6_1:20451321-20451340 | Msa0878960:intron | 40.0% | |
| GCTATAACAGTATGGTACCT+AGG | - | chr6_1:20451341-20451360 | None:intergenic | 40.0% | |
| GACTATTGTCTTGAAGAGCA+AGG | - | chr6_1:20451504-20451523 | None:intergenic | 40.0% | |
| ! | CAGTGAGCTGCTGATTAAAT+CGG | + | chr6_1:20451523-20451542 | Msa0878960:intron | 40.0% |
| !! | CTACGAAAGCATTTGTGAAG+AGG | + | chr6_1:20451662-20451681 | Msa0878960:intron | 40.0% |
| CAGAGTAGGTAGTTAGTTAC+TGG | + | chr6_1:20451748-20451767 | Msa0878960:intron | 40.0% | |
| TACTGGGAACGAATTCAGTT+AGG | + | chr6_1:20451765-20451784 | Msa0878960:intron | 40.0% | |
| CAAAACCATACATTCAGACC+TGG | - | chr6_1:20451823-20451842 | None:intergenic | 40.0% | |
| CAGAGATGATAGAAGGATAG+GGG | - | chr6_1:20451847-20451866 | None:intergenic | 40.0% | |
| ACGAAGAACGTAAACTCGAT+AGG | + | chr6_1:20452264-20452283 | Msa0878960:intron | 40.0% | |
| GGAATGATGTGTGTGTTCAT+TGG | + | chr6_1:20452687-20452706 | Msa0878960:CDS | 40.0% | |
| AGATATTCTGGTCAAGGCAA+AGG | + | chr6_1:20453248-20453267 | Msa0878960:CDS | 40.0% | |
| ACTTCTTGTGCACTATCTCT+TGG | + | chr6_1:20453358-20453377 | Msa0878960:CDS | 40.0% | |
| ! | TGTGCACTATCTCTTGGTTT+TGG | + | chr6_1:20453364-20453383 | Msa0878960:CDS | 40.0% |
| !! | GTGCACTATCTCTTGGTTTT+GGG | + | chr6_1:20453365-20453384 | Msa0878960:CDS | 40.0% |
| !!! | TGCACTATCTCTTGGTTTTG+GGG | + | chr6_1:20453366-20453385 | Msa0878960:CDS | 40.0% |
| TCAAGAATGAATGGCTTCAG+AGG | + | chr6_1:20453436-20453455 | Msa0878960:CDS | 40.0% | |
| TGGTTGGAGCAAAATACCTA+TGG | + | chr6_1:20453501-20453520 | Msa0878960:CDS | 40.0% | |
| AACAAACACTATCAAGGGCT+AGG | - | chr6_1:20453571-20453590 | None:intergenic | 40.0% | |
| !! | TTGTGATGTTGGGTTGGGTT+GGG | - | chr6_1:20446870-20446889 | None:intergenic | 45.0% |
| !! | ATTGTGATGTTGGGTTGGGT+TGG | - | chr6_1:20446871-20446890 | None:intergenic | 45.0% |
| ! | TGCATGTGGTGTCTGTTTTG+TGG | + | chr6_1:20447435-20447454 | Msa0878960:five_prime_UTR | 45.0% |
| ! | ATCTTTTATCCATGGGGGAG+TGG | + | chr6_1:20447464-20447483 | Msa0878960:exon | 45.0% |
| ! | TCTTTTATCCATGGGGGAGT+GGG | + | chr6_1:20447465-20447484 | Msa0878960:exon | 45.0% |
| TATGTATATGCACGGTCGCA+CGG | + | chr6_1:20447622-20447641 | Msa0878960:intron | 45.0% | |
| !! | TACTTTACCCGTGTCACTTG+TGG | - | chr6_1:20447663-20447682 | None:intergenic | 45.0% |
| GTTCAAGCTGAATGGTTCTC+AGG | + | chr6_1:20447738-20447757 | Msa0878960:intron | 45.0% | |
| TGTTGAATGAGACGGAGTGT+TGG | + | chr6_1:20447835-20447854 | Msa0878960:intron | 45.0% | |
| ! | GTTGAATGAGACGGAGTGTT+GGG | + | chr6_1:20447836-20447855 | Msa0878960:intron | 45.0% |
| !! | ACTAGACTAGAGTGTTGGGA+TGG | + | chr6_1:20447911-20447930 | Msa0878960:intron | 45.0% |
| !! | GATGGAGGATTTTTGGGAGT+AGG | + | chr6_1:20448436-20448455 | Msa0878960:intron | 45.0% |
| !! | TGGAGGATTTTTGGGAGTAG+GGG | + | chr6_1:20448438-20448457 | Msa0878960:intron | 45.0% |
| TCAGAGTTGGAGAATCGGTA+TGG | + | chr6_1:20448916-20448935 | Msa0878960:intron | 45.0% | |
| GCACCAAATCTTCTGATCGA+AGG | + | chr6_1:20449200-20449219 | Msa0878960:intron | 45.0% | |
| ! | GTATTCACATGTGTCGGTGT+CGG | - | chr6_1:20449255-20449274 | None:intergenic | 45.0% |
| !! | TGAAGCACTGACACGAACAT+CGG | - | chr6_1:20449333-20449352 | None:intergenic | 45.0% |
| GCGGAGGAAATAGAAGACAT+AGG | - | chr6_1:20449413-20449432 | None:intergenic | 45.0% | |
| AAAGCTGCAAGAAGTGACTG+CGG | - | chr6_1:20449432-20449451 | None:intergenic | 45.0% | |
| CAGTCACTTCTTGCAGCTTT+GGG | + | chr6_1:20449432-20449451 | Msa0878960:intron | 45.0% | |
| ACACAAAGTAAGCGAATGCG+AGG | - | chr6_1:20449479-20449498 | None:intergenic | 45.0% | |
| GCCACAGCTTTCATTGTTCT+TGG | + | chr6_1:20449638-20449657 | Msa0878960:CDS | 45.0% | |
| AAATGTGAAATGTGCAGGCG+AGG | + | chr6_1:20450059-20450078 | Msa0878960:intron | 45.0% | |
| GACATGACCTCAAACCCATT+TGG | + | chr6_1:20450105-20450124 | Msa0878960:CDS | 45.0% | |
| CATGACCTCAAACCCATTTG+GGG | + | chr6_1:20450107-20450126 | Msa0878960:CDS | 45.0% | |
| GGCAATAGCATACCCCAAAT+GGG | - | chr6_1:20450122-20450141 | None:intergenic | 45.0% | |
| !! | CCTTTGATGGAAAGTGTCTC+CGG | + | chr6_1:20450260-20450279 | Msa0878960:intron | 45.0% |
| TTACGGATGTGTCAGTGTCT+TGG | + | chr6_1:20450353-20450372 | Msa0878960:intron | 45.0% | |
| ! | CAGTTCTAACCTCTTACGAC+TGG | + | chr6_1:20450455-20450474 | Msa0878960:intron | 45.0% |
| TAGACATAGCCAGTCGTAAG+AGG | - | chr6_1:20450467-20450486 | None:intergenic | 45.0% | |
| !! | GTACTGCTGGATTTTGGGTA+AGG | + | chr6_1:20450541-20450560 | Msa0878960:intron | 45.0% |
| TTAACTTCTTCGAGTGTCCG+TGG | - | chr6_1:20450846-20450865 | None:intergenic | 45.0% | |
| GTAGATGTGGCAGTTACGAA+AGG | + | chr6_1:20451133-20451152 | Msa0878960:intron | 45.0% | |
| !! | TACGAAAGGGTGGTGTTGTT+TGG | + | chr6_1:20451147-20451166 | Msa0878960:intron | 45.0% |
| ACTAGATCGCTGCTAATGAC+AGG | - | chr6_1:20451202-20451221 | None:intergenic | 45.0% | |
| TTGCTGACCCCCTATTTGTT+GGG | - | chr6_1:20451229-20451248 | None:intergenic | 45.0% | |
| TTTGCTGACCCCCTATTTGT+TGG | - | chr6_1:20451230-20451249 | None:intergenic | 45.0% | |
| AAATAGGGGGTCAGCAAAGT+AGG | + | chr6_1:20451232-20451251 | Msa0878960:intron | 45.0% | |
| ! | CAAGTTGAGGTAGCAATCGT+TGG | + | chr6_1:20451360-20451379 | Msa0878960:intron | 45.0% |
| TAGCAATCGTTGGCACATTC+AGG | + | chr6_1:20451370-20451389 | Msa0878960:intron | 45.0% | |
| TTGGCACATTCAGGAATGAG+AGG | + | chr6_1:20451379-20451398 | Msa0878960:intron | 45.0% | |
| AGGATGTCTTCCAATTCCGT+CGG | - | chr6_1:20451484-20451503 | None:intergenic | 45.0% | |
| TTCCCATAGTTGTCACAGTC+CGG | - | chr6_1:20451556-20451575 | None:intergenic | 45.0% | |
| AATAGGGGGTTTAGCAGAGT+AGG | + | chr6_1:20451734-20451753 | Msa0878960:intron | 45.0% | |
| TTAGGGATGCAAATGGGACA+CGG | + | chr6_1:20452115-20452134 | Msa0878960:intron | 45.0% | |
| ! | GAAAGCATACTAGGAGGTTC+CGG | - | chr6_1:20452413-20452432 | None:intergenic | 45.0% |
| CTGGCACCTGATGAATCAAA+AGG | + | chr6_1:20452720-20452739 | Msa0878960:CDS | 45.0% | |
| TGAAATGGCAGGAGACACTA+CGG | - | chr6_1:20452861-20452880 | None:intergenic | 45.0% | |
| ! | GTCTTTGCTGTGTGCTTCTT+CGG | - | chr6_1:20453190-20453209 | None:intergenic | 45.0% |
| ! | AGACGCGAGATCTTTTGTCA+AGG | + | chr6_1:20453206-20453225 | Msa0878960:CDS | 45.0% |
| ! | GACGCGAGATCTTTTGTCAA+GGG | + | chr6_1:20453207-20453226 | Msa0878960:CDS | 45.0% |
| !!! | ACTATCTCTTGGTTTTGGGG+AGG | + | chr6_1:20453369-20453388 | Msa0878960:CDS | 45.0% |
| ATGAATGGCTTCAGAGGCAA+TGG | + | chr6_1:20453442-20453461 | Msa0878960:CDS | 45.0% | |
| AAACACTATCAAGGGCTAGG+AGG | - | chr6_1:20453568-20453587 | None:intergenic | 45.0% | |
| ! | TGTTTGTTAGTCATCGCCGT+AGG | + | chr6_1:20453583-20453602 | Msa0878960:three_prime_UTR | 45.0% |
| CGAAAACCTGGGAAATCCTA+CGG | - | chr6_1:20453602-20453621 | None:intergenic | 45.0% | |
| TTCATGATTCTTCCCCCCTA+AGG | + | chr6_1:20453707-20453726 | Msa0878960:three_prime_UTR | 45.0% | |
| TCTTCCCCCCTAAGGAAAAA+AGG | + | chr6_1:20453715-20453734 | Msa0878960:three_prime_UTR | 45.0% | |
| !!! | TTAATTTTTCAAATTTTTTA+CGG | + | chr6_1:20450336-20450355 | Msa0878960:intron | 5.0% |
| !! | GATTTTTGGGAGTAGGGGAG+AGG | + | chr6_1:20448443-20448462 | Msa0878960:intron | 50.0% |
| ! | CTTGGAAGTGATGGGGTACA+TGG | + | chr6_1:20448863-20448882 | Msa0878960:CDS | 50.0% |
| TTCCTTTGGCTATGCTGCTC+AGG | + | chr6_1:20449065-20449084 | Msa0878960:CDS | 50.0% | |
| TACCTGAGCAGCATAGCCAA+AGG | - | chr6_1:20449070-20449089 | None:intergenic | 50.0% | |
| GCAGTCACTTCTTGCAGCTT+TGG | + | chr6_1:20449431-20449450 | Msa0878960:intron | 50.0% | |
| GTACAGAAGGAACGCGACAT+TGG | - | chr6_1:20449927-20449946 | None:intergenic | 50.0% | |
| ! | GCATACCCCAAATGGGTTTG+AGG | - | chr6_1:20450115-20450134 | None:intergenic | 50.0% |
| CGGCAATAGCATACCCCAAA+TGG | - | chr6_1:20450123-20450142 | None:intergenic | 50.0% | |
| CCGGAGACACTTTCCATCAA+AGG | - | chr6_1:20450263-20450282 | None:intergenic | 50.0% | |
| ATGTGGCAGTTACGAAAGGG+TGG | + | chr6_1:20451137-20451156 | Msa0878960:intron | 50.0% | |
| ! | TGCTGACCCCCTATTTGTTG+GGG | - | chr6_1:20451228-20451247 | None:intergenic | 50.0% |
| !! | TCCATTAGAGGTGCTAGCGA+AGG | + | chr6_1:20451422-20451441 | Msa0878960:intron | 50.0% |
| ACCTTCGCTAGCACCTCTAA+TGG | - | chr6_1:20451426-20451445 | None:intergenic | 50.0% | |
| !! | TTAGAGGTGCTAGCGAAGGT+AGG | + | chr6_1:20451426-20451445 | Msa0878960:intron | 50.0% |
| TGCTAGCGAAGGTAGGATCA+GGG | + | chr6_1:20451433-20451452 | Msa0878960:intron | 50.0% | |
| !! | TTGCTATTTCCTGGGACCGA+CGG | + | chr6_1:20451465-20451484 | Msa0878960:intron | 50.0% |
| TCTCCGGACTGTGACAACTA+TGG | + | chr6_1:20451550-20451569 | Msa0878960:intron | 50.0% | |
| CTCCGGACTGTGACAACTAT+GGG | + | chr6_1:20451551-20451570 | Msa0878960:intron | 50.0% | |
| ACGTTCACCTTGTCCTCAAG+AGG | - | chr6_1:20451610-20451629 | None:intergenic | 50.0% | |
| TCAGACCTGGGCGAATTCAT+GGG | - | chr6_1:20451810-20451829 | None:intergenic | 50.0% | |
| TTCAGACCTGGGCGAATTCA+TGG | - | chr6_1:20451811-20451830 | None:intergenic | 50.0% | |
| TTCGCCCAGGTCTGAATGTA+TGG | + | chr6_1:20451815-20451834 | Msa0878960:intron | 50.0% | |
| GCAAATGGGACACGGCAATA+TGG | + | chr6_1:20452123-20452142 | Msa0878960:intron | 50.0% | |
| AACTTGACTGCATGCCTGCT+AGG | + | chr6_1:20452326-20452345 | Msa0878960:intron | 50.0% | |
| ! | TCAGAGGCAATGGACTCGAA+CGG | + | chr6_1:20453452-20453471 | Msa0878960:CDS | 50.0% |
| !! | TTTTGGGAGTAGGGGAGAGG+AGG | + | chr6_1:20448446-20448465 | Msa0878960:intron | 55.0% |
| !! | ACATGTGTCGGTGTCGGTGT+CGG | - | chr6_1:20449249-20449268 | None:intergenic | 55.0% |
| GCTGTAGTTTCGGGGGCTAT+AGG | + | chr6_1:20450152-20450171 | Msa0878960:CDS | 55.0% | |
| !! | CAAAGGTGTCGGTGCTGCAA+AGG | - | chr6_1:20450246-20450265 | None:intergenic | 55.0% |
| !! | TGCAGCACCGACACCTTTGA+TGG | + | chr6_1:20450247-20450266 | Msa0878960:intron | 55.0% |
| !! | TCGGTGTCGTATAGACGCGT+CGG | - | chr6_1:20450289-20450308 | None:intergenic | 55.0% |
| ATGGCTATCAGCTGCACAGC+TGG | + | chr6_1:20450487-20450506 | Msa0878960:CDS | 55.0% | |
| TTCTTCGAGTGTCCGTGGCA+AGG | - | chr6_1:20450841-20450860 | None:intergenic | 55.0% | |
| AGGGGGTCAGCAAAGTAGGT+TGG | + | chr6_1:20451236-20451255 | Msa0878960:intron | 55.0% | |
| GGGGGTCAGCAAAGTAGGTT+GGG | + | chr6_1:20451237-20451256 | Msa0878960:intron | 55.0% | |
| ! | GGTCAGCAAAGTAGGTTGGG+AGG | + | chr6_1:20451240-20451259 | Msa0878960:intron | 55.0% |
| GTGCTAGCGAAGGTAGGATC+AGG | + | chr6_1:20451432-20451451 | Msa0878960:intron | 55.0% | |
| GCTAGCGAAGGTAGGATCAG+GGG | + | chr6_1:20451434-20451453 | Msa0878960:intron | 55.0% | |
| TTTCCTGGGACCGACGGAAT+TGG | + | chr6_1:20451471-20451490 | Msa0878960:intron | 55.0% | |
| TGCCTGCTAGGTGAGGTATG+CGG | + | chr6_1:20452338-20452357 | Msa0878960:intron | 55.0% | |
| GCATACTAGGAGGTTCCGGA+AGG | - | chr6_1:20452409-20452428 | None:intergenic | 55.0% | |
| TCATCGCCGTAGGATTTCCC+AGG | + | chr6_1:20453593-20453612 | Msa0878960:three_prime_UTR | 55.0% | |
| !! | TCCATGGGGGAGTGGGTTGT+TGG | + | chr6_1:20447472-20447491 | Msa0878960:exon | 60.0% |
| TCCAACAACCCACTCCCCCA+TGG | - | chr6_1:20447476-20447495 | None:intergenic | 60.0% | |
| GCTGCAAGAAGTGACTGCGG+AGG | - | chr6_1:20449429-20449448 | None:intergenic | 60.0% | |
| CGTATAGACGCGTCGGACAC+CGG | - | chr6_1:20450282-20450301 | None:intergenic | 60.0% | |
| CTTCCAATTCCGTCGGTCCC+AGG | - | chr6_1:20451477-20451496 | None:intergenic | 60.0% | |
| AGGTGCCCATGAATTCGCCC+AGG | + | chr6_1:20451802-20451821 | Msa0878960:intron | 60.0% | |
| GACTGCATGCCTGCTAGGTG+AGG | + | chr6_1:20452331-20452350 | Msa0878960:intron | 60.0% | |
| AGCCGCATACCTCACCTAGC+AGG | - | chr6_1:20452343-20452362 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 20446634 | 20453862 | 20446634 | ID=Msa0878960;Name=Msa0878960 |
| chr6_1 | mRNA | 20446634 | 20453862 | 20446634 | ID=Msa0878960-mRNA-1;Parent=Msa0878960;Name=Msa0878960-mRNA-1;_AED=0.06;_eAED=0.06;_QI=442|1|1|1|0.85|0.8|15|283|442 |
| chr6_1 | exon | 20446634 | 20446651 | 20446634 | ID=Msa0878960-mRNA-1:exon:5523;Parent=Msa0878960-mRNA-1 |
| chr6_1 | exon | 20446676 | 20446929 | 20446676 | ID=Msa0878960-mRNA-1:exon:5524;Parent=Msa0878960-mRNA-1 |
| chr6_1 | exon | 20447305 | 20447567 | 20447305 | ID=Msa0878960-mRNA-1:exon:5525;Parent=Msa0878960-mRNA-1 |
| chr6_1 | exon | 20448848 | 20448932 | 20448848 | ID=Msa0878960-mRNA-1:exon:5526;Parent=Msa0878960-mRNA-1 |
| chr6_1 | exon | 20449025 | 20449086 | 20449025 | ID=Msa0878960-mRNA-1:exon:5527;Parent=Msa0878960-mRNA-1 |
| chr6_1 | exon | 20449435 | 20449520 | 20449435 | ID=Msa0878960-mRNA-1:exon:5528;Parent=Msa0878960-mRNA-1 |
| chr6_1 | exon | 20449628 | 20449701 | 20449628 | ID=Msa0878960-mRNA-1:exon:5529;Parent=Msa0878960-mRNA-1 |
| chr6_1 | exon | 20449891 | 20449993 | 20449891 | ID=Msa0878960-mRNA-1:exon:5530;Parent=Msa0878960-mRNA-1 |
| chr6_1 | exon | 20450076 | 20450204 | 20450076 | ID=Msa0878960-mRNA-1:exon:5531;Parent=Msa0878960-mRNA-1 |
| chr6_1 | exon | 20450458 | 20450557 | 20450458 | ID=Msa0878960-mRNA-1:exon:5532;Parent=Msa0878960-mRNA-1 |
| chr6_1 | exon | 20450648 | 20450767 | 20450648 | ID=Msa0878960-mRNA-1:exon:5533;Parent=Msa0878960-mRNA-1 |
| chr6_1 | exon | 20452651 | 20452741 | 20452651 | ID=Msa0878960-mRNA-1:exon:5534;Parent=Msa0878960-mRNA-1 |
| chr6_1 | exon | 20452828 | 20452894 | 20452828 | ID=Msa0878960-mRNA-1:exon:5535;Parent=Msa0878960-mRNA-1 |
| chr6_1 | exon | 20453173 | 20453269 | 20453173 | ID=Msa0878960-mRNA-1:exon:5536;Parent=Msa0878960-mRNA-1 |
| chr6_1 | exon | 20453358 | 20453862 | 20453358 | ID=Msa0878960-mRNA-1:exon:5537;Parent=Msa0878960-mRNA-1 |
| chr6_1 | five_prime_UTR | 20446634 | 20446651 | 20446634 | ID=Msa0878960-mRNA-1:five_prime_utr;Parent=Msa0878960-mRNA-1 |
| chr6_1 | five_prime_UTR | 20446676 | 20446929 | 20446676 | ID=Msa0878960-mRNA-1:five_prime_utr;Parent=Msa0878960-mRNA-1 |
| chr6_1 | five_prime_UTR | 20447305 | 20447474 | 20447305 | ID=Msa0878960-mRNA-1:five_prime_utr;Parent=Msa0878960-mRNA-1 |
| chr6_1 | CDS | 20447475 | 20447567 | 20447475 | ID=Msa0878960-mRNA-1:cds;Parent=Msa0878960-mRNA-1 |
| chr6_1 | CDS | 20448848 | 20448932 | 20448848 | ID=Msa0878960-mRNA-1:cds;Parent=Msa0878960-mRNA-1 |
| chr6_1 | CDS | 20449025 | 20449086 | 20449025 | ID=Msa0878960-mRNA-1:cds;Parent=Msa0878960-mRNA-1 |
| chr6_1 | CDS | 20449435 | 20449520 | 20449435 | ID=Msa0878960-mRNA-1:cds;Parent=Msa0878960-mRNA-1 |
| chr6_1 | CDS | 20449628 | 20449701 | 20449628 | ID=Msa0878960-mRNA-1:cds;Parent=Msa0878960-mRNA-1 |
| chr6_1 | CDS | 20449891 | 20449993 | 20449891 | ID=Msa0878960-mRNA-1:cds;Parent=Msa0878960-mRNA-1 |
| chr6_1 | CDS | 20450076 | 20450204 | 20450076 | ID=Msa0878960-mRNA-1:cds;Parent=Msa0878960-mRNA-1 |
| chr6_1 | CDS | 20450458 | 20450557 | 20450458 | ID=Msa0878960-mRNA-1:cds;Parent=Msa0878960-mRNA-1 |
| chr6_1 | CDS | 20450648 | 20450767 | 20450648 | ID=Msa0878960-mRNA-1:cds;Parent=Msa0878960-mRNA-1 |
| chr6_1 | CDS | 20452651 | 20452741 | 20452651 | ID=Msa0878960-mRNA-1:cds;Parent=Msa0878960-mRNA-1 |
| chr6_1 | CDS | 20452828 | 20452894 | 20452828 | ID=Msa0878960-mRNA-1:cds;Parent=Msa0878960-mRNA-1 |
| chr6_1 | CDS | 20453173 | 20453269 | 20453173 | ID=Msa0878960-mRNA-1:cds;Parent=Msa0878960-mRNA-1 |
| chr6_1 | CDS | 20453358 | 20453579 | 20453358 | ID=Msa0878960-mRNA-1:cds;Parent=Msa0878960-mRNA-1 |
| chr6_1 | three_prime_UTR | 20453580 | 20453862 | 20453580 | ID=Msa0878960-mRNA-1:three_prime_utr;Parent=Msa0878960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
