Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887920 | RHN74115.1 | 89.326 | 178 | 19 | 0 | 120 | 297 | 1 | 178 | 5.21e-111 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887920 | A0A396JCE0 | 89.326 | 178 | 19 | 0 | 120 | 297 | 1 | 178 | 2.49e-111 | 330 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102070 | Msa0887920 | 0.821737 | 3.444573e-53 | -8.615850e-47 |
| Msa0726140 | Msa0887920 | 0.852697 | 3.895460e-61 | -8.615850e-47 |
| Msa0743810 | Msa0887920 | 0.839650 | 1.395809e-57 | -8.615850e-47 |
| Msa0745060 | Msa0887920 | 0.825556 | 4.395237e-54 | -8.615850e-47 |
| Msa0777870 | Msa0887920 | 0.829550 | 4.834358e-55 | -8.615850e-47 |
| Msa0783160 | Msa0887920 | 0.826866 | 2.143767e-54 | -8.615850e-47 |
| Msa0787600 | Msa0887920 | 0.825865 | 3.711954e-54 | -8.615850e-47 |
| Msa0808010 | Msa0887920 | 0.816544 | 5.237196e-52 | -8.615850e-47 |
| Msa0808020 | Msa0887920 | 0.804087 | 2.556428e-49 | -8.615850e-47 |
| Msa0825860 | Msa0887920 | 0.831738 | 1.407674e-55 | -8.615850e-47 |
| Msa0142220 | Msa0887920 | 0.818291 | 2.116650e-52 | -8.615850e-47 |
| Msa0145750 | Msa0887920 | 0.841161 | 5.620908e-58 | -8.615850e-47 |
| Msa0227480 | Msa0887920 | 0.811032 | 8.572958e-51 | -8.615850e-47 |
| Msa0384800 | Msa0887920 | 0.814817 | 1.270184e-51 | -8.615850e-47 |
| Msa0414410 | Msa0887920 | 0.832335 | 1.002545e-55 | -8.615850e-47 |
| Msa0414420 | Msa0887920 | 0.852992 | 3.208096e-61 | -8.615850e-47 |
| Msa0450000 | Msa0887920 | 0.805816 | 1.111941e-49 | -8.615850e-47 |
| Msa0451730 | Msa0887920 | 0.830189 | 3.378524e-55 | -8.615850e-47 |
| Msa0452900 | Msa0887920 | 0.826263 | 2.985399e-54 | -8.615850e-47 |
| Msa0452910 | Msa0887920 | 0.814894 | 1.220939e-51 | -8.615850e-47 |
| Msa0453120 | Msa0887920 | 0.814573 | 1.438207e-51 | -8.615850e-47 |
| Msa0454910 | Msa0887920 | 0.812201 | 4.776423e-51 | -8.615850e-47 |
| Msa0267000 | Msa0887920 | 0.834961 | 2.213435e-56 | -8.615850e-47 |
| Msa0267010 | Msa0887920 | 0.829712 | 4.416131e-55 | -8.615850e-47 |
| Msa0270520 | Msa0887920 | 0.814133 | 1.799214e-51 | -8.615850e-47 |
| Msa0342240 | Msa0887920 | 0.809045 | 2.296690e-50 | -8.615850e-47 |
| Msa0360510 | Msa0887920 | 0.820320 | 7.298709e-53 | -8.615850e-47 |
| Msa0502760 | Msa0887920 | 0.800025 | 1.749140e-48 | -8.615850e-47 |
| Msa0564890 | Msa0887920 | 0.838830 | 2.277161e-57 | -8.615850e-47 |
| Msa0846210 | Msa0887920 | 0.813058 | 3.101068e-51 | -8.615850e-47 |
| Msa0846350 | Msa0887920 | 0.819388 | 1.192211e-52 | -8.615850e-47 |
| Msa0865320 | Msa0887920 | 0.810231 | 1.277353e-50 | -8.615850e-47 |
| Msa0885290 | Msa0887920 | 0.808044 | 3.758495e-50 | -8.615850e-47 |
| Msa0887920 | Msa0981370 | 0.804968 | 1.673983e-49 | -8.615850e-47 |
| Msa0887920 | Msa0989060 | 0.861538 | 9.560108e-64 | -8.615850e-47 |
| Msa0887920 | Msa1016280 | 0.816518 | 5.305624e-52 | -8.615850e-47 |
| Msa0887920 | Msa1025360 | 0.835144 | 1.990851e-56 | -8.615850e-47 |
| Msa0887920 | Msa1025370 | 0.839521 | 1.507751e-57 | -8.615850e-47 |
| Msa0887920 | Msa1044830 | 0.837132 | 6.226785e-57 | -8.615850e-47 |
| Msa0887920 | Msa1044840 | 0.838307 | 3.108911e-57 | -8.615850e-47 |
| Msa0887920 | Msa1092990 | 0.813870 | 2.055944e-51 | -8.615850e-47 |
| Msa0887920 | Msa1100980 | 0.842507 | 2.479192e-58 | -8.615850e-47 |
| Msa0887920 | Msa1109440 | 0.802746 | 4.846787e-49 | -8.615850e-47 |
| Msa0887920 | Msa1121200 | 0.807974 | 3.888410e-50 | -8.615850e-47 |
| Msa0887920 | Msa1135740 | 0.824896 | 6.295908e-54 | -8.615850e-47 |
| Msa0887920 | Msa1150370 | 0.808088 | 3.677616e-50 | -8.615850e-47 |
| Msa0887920 | Msa1173920 | 0.806198 | 9.239964e-50 | -8.615850e-47 |
| Msa0887920 | Msa1187940 | 0.824360 | 8.421633e-54 | -8.615850e-47 |
| Msa0887920 | Msa1187950 | 0.817167 | 3.795036e-52 | -8.615850e-47 |
| Msa0887920 | Msa1192640 | 0.834598 | 2.731748e-56 | -8.615850e-47 |
| Msa0887920 | Msa1269670 | 0.818423 | 1.975170e-52 | -8.615850e-47 |
| Msa0887920 | Msa1270230 | 0.832007 | 1.208506e-55 | -8.615850e-47 |
| Msa0887920 | Msa1270240 | 0.858332 | 8.859279e-63 | -8.615850e-47 |
| Msa0887920 | Msa1270270 | 0.825461 | 4.628509e-54 | -8.615850e-47 |
| Msa0887920 | Msa1273230 | 0.807236 | 5.579563e-50 | -8.615850e-47 |
| Msa0887920 | Msa1283330 | 0.842660 | 2.257658e-58 | -8.615850e-47 |
| Msa0887920 | Msa1285930 | 0.841319 | 5.106852e-58 | -8.615850e-47 |
| Msa0887920 | Msa1287800 | 0.870113 | 1.865076e-66 | -8.615850e-47 |
| Msa0887920 | Msa1287810 | 0.846891 | 1.633657e-59 | -8.615850e-47 |
| Msa0887920 | Msa1287820 | 0.826691 | 2.360733e-54 | -8.615850e-47 |
| Msa0887920 | Msa1287830 | 0.803636 | 3.171661e-49 | -8.615850e-47 |
| Msa0887920 | Msa1307890 | 0.821276 | 4.400623e-53 | -8.615850e-47 |
| Msa0887920 | Msa1404000 | 0.851874 | 6.677572e-61 | -8.615850e-47 |
| Msa0887920 | Msa1415310 | 0.811464 | 6.910180e-51 | -8.615850e-47 |
| Msa0887920 | Msa1422180 | 0.823413 | 1.404092e-53 | -8.615850e-47 |
| Msa0887920 | Msa1433120 | 0.825502 | 4.526885e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887920 | MtrunA17_Chr2g0306531 | 89.326 | 178 | 19 | 0 | 120 | 297 | 1 | 178 | 4.79e-115 | 330 |
| Msa0887920 | MtrunA17_Chr4g0011741 | 45.724 | 304 | 150 | 5 | 2 | 293 | 605 | 905 | 2.41e-81 | 264 |
| Msa0887920 | MtrunA17_Chr6g0472201 | 41.611 | 298 | 165 | 3 | 2 | 290 | 94 | 391 | 1.19e-79 | 247 |
| Msa0887920 | MtrunA17_Chr3g0096851 | 47.429 | 175 | 87 | 2 | 2 | 171 | 94 | 268 | 1.43e-52 | 173 |
| Msa0887920 | MtrunA17_Chr7g0226581 | 41.748 | 206 | 108 | 5 | 95 | 293 | 1 | 201 | 2.47e-46 | 157 |
| Msa0887920 | MtrunA17_Chr5g0409781 | 46.154 | 130 | 69 | 1 | 6 | 135 | 47 | 175 | 5.65e-38 | 132 |
| Msa0887920 | MtrunA17_Chr2g0306521 | 92.157 | 51 | 4 | 0 | 1 | 51 | 280 | 330 | 3.56e-26 | 105 |
| Msa0887920 | MtrunA17_Chr2g0305311 | 27.103 | 214 | 149 | 5 | 2 | 212 | 194 | 403 | 2.53e-15 | 75.9 |
| Msa0887920 | MtrunA17_Chr2g0309021 | 26.147 | 218 | 149 | 5 | 4 | 211 | 218 | 433 | 5.40e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887920 | AT1G40087.1 | 25.092 | 271 | 178 | 6 | 2 | 258 | 87 | 346 | 1.58e-18 | 85.5 |
| Msa0887920 | AT3G30200.1 | 28.761 | 226 | 135 | 7 | 3 | 212 | 208 | 423 | 1.59e-17 | 83.2 |
Find 65 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGGAAATTGTTGAAATTT+TGG | 0.050436 | 6_1:-51447315 | Msa0887920:CDS |
| GTGCTTTAACCTATCCTTTA+AGG | 0.092890 | 6_1:+51447366 | None:intergenic |
| ACATCATCTTGACTTAAATT+TGG | 0.147003 | 6_1:+51446506 | None:intergenic |
| TCTGCCATATTCAACCTTAA+AGG | 0.196778 | 6_1:-51447380 | Msa0887920:CDS |
| CCCGGTAGAGTTCGTTGTTT+TGG | 0.258619 | 6_1:-51446704 | Msa0887920:CDS |
| TTGGATTGAATCTTGAAGTT+TGG | 0.291283 | 6_1:+51446781 | None:intergenic |
| CTGGAGACTGATTGGAATCT+TGG | 0.297693 | 6_1:+51446762 | None:intergenic |
| CTATCCTTTAAGGTTGAATA+TGG | 0.303500 | 6_1:+51447376 | None:intergenic |
| TCTGACTTGAGTATGTTTCT+TGG | 0.305561 | 6_1:-51447674 | None:intergenic |
| AAGTACCAGAACCTCATTTC+AGG | 0.309482 | 6_1:-51447333 | Msa0887920:CDS |
| TGAGGTTCTGGTACTTCTTC+AGG | 0.315196 | 6_1:+51447340 | None:intergenic |
| AACACCTTTCCTTCCTTTCT+CGG | 0.347137 | 6_1:+51447462 | None:intergenic |
| ATGTTTCTTGGCACTGTCGC+TGG | 0.363229 | 6_1:-51447662 | Msa0887920:CDS |
| TTTCTAGAATCAATGATGTT+TGG | 0.367312 | 6_1:-51447438 | Msa0887920:CDS |
| TTCATAGTGTTTCTTAATGT+TGG | 0.379202 | 6_1:+51446637 | None:intergenic |
| AGAATCATGGGGAAGATATA+TGG | 0.381398 | 6_1:-51447589 | Msa0887920:CDS |
| CAAGTGTTTCAGTCTTTGTT+TGG | 0.381670 | 6_1:-51446737 | Msa0887920:CDS |
| TCATTCTTCTTCAACATTGA+CGG | 0.388492 | 6_1:+51446668 | None:intergenic |
| AAGAAAGTTGTAGAGAATCA+TGG | 0.394480 | 6_1:-51447602 | Msa0887920:CDS |
| TTCGATAAACATTTCTGCTT+GGG | 0.400423 | 6_1:+51446947 | None:intergenic |
| TACACATTTACTTGGATAGT+AGG | 0.427575 | 6_1:+51447286 | None:intergenic |
| CACTTGGTCTGGAGACTGAT+TGG | 0.430299 | 6_1:+51446754 | None:intergenic |
| CTTAAAATTTGTGTAAAGGA+AGG | 0.432309 | 6_1:+51447622 | None:intergenic |
| TTCAACAATTTCCTGAAATG+AGG | 0.433787 | 6_1:+51447322 | None:intergenic |
| AAAGACTGAAACACTTGGTC+TGG | 0.435429 | 6_1:+51446743 | None:intergenic |
| ACACCTTTCCTTCCTTTCTC+GGG | 0.441204 | 6_1:+51447463 | None:intergenic |
| TTTCGATAAACATTTCTGCT+TGG | 0.456916 | 6_1:+51446946 | None:intergenic |
| AAATTTATTATTCCCGAGAA+AGG | 0.463753 | 6_1:-51447475 | Msa0887920:CDS |
| AGAAAGTTGTAGAGAATCAT+GGG | 0.471159 | 6_1:-51447601 | Msa0887920:CDS |
| AACATGATGGGACATGCTTT+AGG | 0.472552 | 6_1:-51446479 | Msa0887920:CDS |
| ACCTGAAAAGCGTGCAAAGA+AGG | 0.475574 | 6_1:-51446988 | Msa0887920:intron |
| TCCAAAACAACGAACTCTAC+CGG | 0.480920 | 6_1:+51446703 | None:intergenic |
| AATTTCCTGAAATGAGGTTC+TGG | 0.484383 | 6_1:+51447328 | None:intergenic |
| TTAAAATTTGTGTAAAGGAA+GGG | 0.488829 | 6_1:+51447623 | None:intergenic |
| CAGAAGTTTATACACCGAAT+GGG | 0.492426 | 6_1:-51447136 | Msa0887920:CDS |
| CATATTCAACCTTAAAGGAT+AGG | 0.494808 | 6_1:-51447375 | Msa0887920:CDS |
| ATCAACCCATGTTCCTGAAA+AGG | 0.497978 | 6_1:-51446423 | Msa0887920:CDS |
| CTTTCTTAAAATTTGTGTAA+AGG | 0.498638 | 6_1:+51447618 | None:intergenic |
| TGTTTCTTGGCACTGTCGCT+GGG | 0.502197 | 6_1:-51447661 | Msa0887920:CDS |
| GACTAGCATGAAGGAGAGGA+TGG | 0.511088 | 6_1:-51446606 | Msa0887920:CDS |
| AGCGTGCAAAGAAGGATGAC+GGG | 0.511727 | 6_1:-51446980 | Msa0887920:CDS |
| CCAAAACAACGAACTCTACC+GGG | 0.527938 | 6_1:+51446704 | None:intergenic |
| TTATTATTCCCGAGAAAGGA+AGG | 0.552013 | 6_1:-51447471 | Msa0887920:CDS |
| GAAACACGTCAACCTCGAAA+AGG | 0.553170 | 6_1:-51446927 | Msa0887920:CDS |
| GCAGAAGTTTATACACCGAA+TGG | 0.554215 | 6_1:-51447137 | Msa0887920:CDS |
| AACATTAAGAAACACTATGA+AGG | 0.556057 | 6_1:-51446635 | Msa0887920:CDS |
| AAAAGTTGATGAAGAAACAG+AGG | 0.586729 | 6_1:-51446904 | Msa0887920:CDS |
| GTCATTGACAAAGAAGAGGA+TGG | 0.591962 | 6_1:-51446573 | Msa0887920:CDS |
| CATTTACTTGGATAGTAGGA+TGG | 0.594484 | 6_1:+51447290 | None:intergenic |
| AAGCGTGCAAAGAAGGATGA+CGG | 0.594491 | 6_1:-51446981 | Msa0887920:CDS |
| AGATGATGTGGAGAACATGA+TGG | 0.600705 | 6_1:-51446492 | Msa0887920:CDS |
| CAAACAAAGACTGAAACACT+TGG | 0.600985 | 6_1:+51446738 | None:intergenic |
| AAATTTAAGTCAAGATGATG+TGG | 0.602230 | 6_1:-51446504 | Msa0887920:CDS |
| ACGAGTCATTGACAAAGAAG+AGG | 0.613357 | 6_1:-51446577 | Msa0887920:CDS |
| TAAAGGATAGGTTAAAGCAC+AGG | 0.618100 | 6_1:-51447363 | Msa0887920:CDS |
| AGGTGAAATGACTAGCATGA+AGG | 0.622260 | 6_1:-51446615 | Msa0887920:CDS |
| ATTCCCGAGAAAGGAAGGAA+AGG | 0.622274 | 6_1:-51447466 | Msa0887920:CDS |
| TTGTTTGGTAAAGAAAAGCC+CGG | 0.632082 | 6_1:-51446722 | Msa0887920:CDS |
| AGAAGTTTATACACCGAATG+GGG | 0.636871 | 6_1:-51447135 | Msa0887920:CDS |
| AAATGACTAGCATGAAGGAG+AGG | 0.644066 | 6_1:-51446610 | Msa0887920:CDS |
| CATGGGTTGATGCAGACGAA+TGG | 0.653375 | 6_1:+51446435 | None:intergenic |
| GATGATGTGGAGAACATGAT+GGG | 0.656752 | 6_1:-51446491 | Msa0887920:CDS |
| GAAAGTTGTAGAGAATCATG+GGG | 0.672207 | 6_1:-51447600 | Msa0887920:CDS |
| TGCAAAGAAGGATGACGGGG+AGG | 0.674888 | 6_1:-51446976 | Msa0887920:CDS |
| GCGTGCAAAGAAGGATGACG+GGG | 0.710711 | 6_1:-51446979 | Msa0887920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATTTGATCGTAAAA+TGG | - | chr6_1:51446546-51446565 | Msa0887920:CDS | 15.0% |
| !!! | GTTTTTTTGTTATTTATGTA+AGG | - | chr6_1:51447276-51447295 | Msa0887920:intron | 15.0% |
| !!! | TATTTTATTTGATCGTAAAA+TGG | - | chr6_1:51446546-51446565 | Msa0887920:CDS | 15.0% |
| !!! | GTTTTTTTGTTATTTATGTA+AGG | - | chr6_1:51447276-51447295 | Msa0887920:intron | 15.0% |
| !! | TTAAAATTTGTGTAAAGGAA+GGG | + | chr6_1:51446460-51446479 | None:intergenic | 20.0% |
| !! | CTTTCTTAAAATTTGTGTAA+AGG | + | chr6_1:51446465-51446484 | None:intergenic | 20.0% |
| !! | ACGATCAAATAAAATATGAT+AGG | + | chr6_1:51446542-51446561 | None:intergenic | 20.0% |
| !! | AAAGAATATACACATTTACT+TGG | + | chr6_1:51446805-51446824 | None:intergenic | 20.0% |
| !! | ACTATATTAAAGATTTGATC+TGG | - | chr6_1:51446830-51446849 | Msa0887920:intron | 20.0% |
| !! | TTAAAATTTGTGTAAAGGAA+GGG | + | chr6_1:51446460-51446479 | None:intergenic | 20.0% |
| !! | CTTTCTTAAAATTTGTGTAA+AGG | + | chr6_1:51446465-51446484 | None:intergenic | 20.0% |
| !! | ACGATCAAATAAAATATGAT+AGG | + | chr6_1:51446542-51446561 | None:intergenic | 20.0% |
| !! | AAAGAATATACACATTTACT+TGG | + | chr6_1:51446805-51446824 | None:intergenic | 20.0% |
| !! | ACTATATTAAAGATTTGATC+TGG | - | chr6_1:51446830-51446849 | Msa0887920:intron | 20.0% |
| ! | CTTAAAATTTGTGTAAAGGA+AGG | + | chr6_1:51446461-51446480 | None:intergenic | 25.0% |
| !! | AGATATATGGAATTTTGTTC+AGG | - | chr6_1:51446504-51446523 | Msa0887920:CDS | 25.0% |
| ! | AAATTTATTATTCCCGAGAA+AGG | - | chr6_1:51446605-51446624 | Msa0887920:CDS | 25.0% |
| !!! | TTTCTAGAATCAATGATGTT+TGG | - | chr6_1:51446642-51446661 | Msa0887920:CDS | 25.0% |
| !! | TCAGGAAATTGTTGAAATTT+TGG | - | chr6_1:51446765-51446784 | Msa0887920:CDS | 25.0% |
| !! | CAGGAAATTGTTGAAATTTT+GGG | - | chr6_1:51446766-51446785 | Msa0887920:CDS | 25.0% |
| ! | ATATTAAAGATTTGATCTGG+TGG | - | chr6_1:51446833-51446852 | Msa0887920:intron | 25.0% |
| ! | TATTAAAGATTTGATCTGGT+GGG | - | chr6_1:51446834-51446853 | Msa0887920:intron | 25.0% |
| !! | CGAATCATAGCAAAATTTTT+CGG | + | chr6_1:51446971-51446990 | None:intergenic | 25.0% |
| ! | TTCATAGTGTTTCTTAATGT+TGG | + | chr6_1:51447446-51447465 | None:intergenic | 25.0% |
| ! | AACATTAAGAAACACTATGA+AGG | - | chr6_1:51447445-51447464 | Msa0887920:CDS | 25.0% |
| ! | ACATCATCTTGACTTAAATT+TGG | + | chr6_1:51447577-51447596 | None:intergenic | 25.0% |
| ! | AAATTTAAGTCAAGATGATG+TGG | - | chr6_1:51447576-51447595 | Msa0887920:intron | 25.0% |
| ! | CTTAAAATTTGTGTAAAGGA+AGG | + | chr6_1:51446461-51446480 | None:intergenic | 25.0% |
| !! | AGATATATGGAATTTTGTTC+AGG | - | chr6_1:51446504-51446523 | Msa0887920:CDS | 25.0% |
| ! | AAATTTATTATTCCCGAGAA+AGG | - | chr6_1:51446605-51446624 | Msa0887920:CDS | 25.0% |
| !!! | TTTCTAGAATCAATGATGTT+TGG | - | chr6_1:51446642-51446661 | Msa0887920:CDS | 25.0% |
| !! | TCAGGAAATTGTTGAAATTT+TGG | - | chr6_1:51446765-51446784 | Msa0887920:CDS | 25.0% |
| !! | CAGGAAATTGTTGAAATTTT+GGG | - | chr6_1:51446766-51446785 | Msa0887920:CDS | 25.0% |
| ! | ATATTAAAGATTTGATCTGG+TGG | - | chr6_1:51446833-51446852 | Msa0887920:intron | 25.0% |
| ! | TATTAAAGATTTGATCTGGT+GGG | - | chr6_1:51446834-51446853 | Msa0887920:intron | 25.0% |
| !! | CGAATCATAGCAAAATTTTT+CGG | + | chr6_1:51446971-51446990 | None:intergenic | 25.0% |
| ! | TTCATAGTGTTTCTTAATGT+TGG | + | chr6_1:51447446-51447465 | None:intergenic | 25.0% |
| ! | AACATTAAGAAACACTATGA+AGG | - | chr6_1:51447445-51447464 | Msa0887920:CDS | 25.0% |
| ! | ACATCATCTTGACTTAAATT+TGG | + | chr6_1:51447577-51447596 | None:intergenic | 25.0% |
| ! | AAATTTAAGTCAAGATGATG+TGG | - | chr6_1:51447576-51447595 | Msa0887920:intron | 25.0% |
| AAGAAAGTTGTAGAGAATCA+TGG | - | chr6_1:51446478-51446497 | Msa0887920:CDS | 30.0% | |
| AGAAAGTTGTAGAGAATCAT+GGG | - | chr6_1:51446479-51446498 | Msa0887920:CDS | 30.0% | |
| !! | CTATCCTTTAAGGTTGAATA+TGG | + | chr6_1:51446707-51446726 | None:intergenic | 30.0% |
| CATATTCAACCTTAAAGGAT+AGG | - | chr6_1:51446705-51446724 | Msa0887920:CDS | 30.0% | |
| TTCAACAATTTCCTGAAATG+AGG | + | chr6_1:51446761-51446780 | None:intergenic | 30.0% | |
| TACACATTTACTTGGATAGT+AGG | + | chr6_1:51446797-51446816 | None:intergenic | 30.0% | |
| ! | CCTTATTGACAGTATTTTTC+TGG | + | chr6_1:51446919-51446938 | None:intergenic | 30.0% |
| CCAGAAAAATACTGTCAATA+AGG | - | chr6_1:51446916-51446935 | Msa0887920:CDS | 30.0% | |
| TGCTATGATTCGACAAAAAT+TGG | - | chr6_1:51446979-51446998 | Msa0887920:CDS | 30.0% | |
| TTCGATAAACATTTCTGCTT+GGG | + | chr6_1:51447136-51447155 | None:intergenic | 30.0% | |
| TTTCGATAAACATTTCTGCT+TGG | + | chr6_1:51447137-51447156 | None:intergenic | 30.0% | |
| !! | AAAAGTTGATGAAGAAACAG+AGG | - | chr6_1:51447176-51447195 | Msa0887920:intron | 30.0% |
| TTGGATTGAATCTTGAAGTT+TGG | + | chr6_1:51447302-51447321 | None:intergenic | 30.0% | |
| TCATTCTTCTTCAACATTGA+CGG | + | chr6_1:51447415-51447434 | None:intergenic | 30.0% | |
| AAGAAAGTTGTAGAGAATCA+TGG | - | chr6_1:51446478-51446497 | Msa0887920:CDS | 30.0% | |
| AGAAAGTTGTAGAGAATCAT+GGG | - | chr6_1:51446479-51446498 | Msa0887920:CDS | 30.0% | |
| !! | CTATCCTTTAAGGTTGAATA+TGG | + | chr6_1:51446707-51446726 | None:intergenic | 30.0% |
| CATATTCAACCTTAAAGGAT+AGG | - | chr6_1:51446705-51446724 | Msa0887920:CDS | 30.0% | |
| TTCAACAATTTCCTGAAATG+AGG | + | chr6_1:51446761-51446780 | None:intergenic | 30.0% | |
| TACACATTTACTTGGATAGT+AGG | + | chr6_1:51446797-51446816 | None:intergenic | 30.0% | |
| ! | CCTTATTGACAGTATTTTTC+TGG | + | chr6_1:51446919-51446938 | None:intergenic | 30.0% |
| CCAGAAAAATACTGTCAATA+AGG | - | chr6_1:51446916-51446935 | Msa0887920:CDS | 30.0% | |
| TGCTATGATTCGACAAAAAT+TGG | - | chr6_1:51446979-51446998 | Msa0887920:CDS | 30.0% | |
| TTCGATAAACATTTCTGCTT+GGG | + | chr6_1:51447136-51447155 | None:intergenic | 30.0% | |
| TTTCGATAAACATTTCTGCT+TGG | + | chr6_1:51447137-51447156 | None:intergenic | 30.0% | |
| !! | AAAAGTTGATGAAGAAACAG+AGG | - | chr6_1:51447176-51447195 | Msa0887920:intron | 30.0% |
| TTGGATTGAATCTTGAAGTT+TGG | + | chr6_1:51447302-51447321 | None:intergenic | 30.0% | |
| TCATTCTTCTTCAACATTGA+CGG | + | chr6_1:51447415-51447434 | None:intergenic | 30.0% | |
| GAAAGTTGTAGAGAATCATG+GGG | - | chr6_1:51446480-51446499 | Msa0887920:CDS | 35.0% | |
| AGAATCATGGGGAAGATATA+TGG | - | chr6_1:51446491-51446510 | Msa0887920:CDS | 35.0% | |
| TTATTATTCCCGAGAAAGGA+AGG | - | chr6_1:51446609-51446628 | Msa0887920:CDS | 35.0% | |
| TCTGCCATATTCAACCTTAA+AGG | - | chr6_1:51446700-51446719 | Msa0887920:CDS | 35.0% | |
| GTGCTTTAACCTATCCTTTA+AGG | + | chr6_1:51446717-51446736 | None:intergenic | 35.0% | |
| TAAAGGATAGGTTAAAGCAC+AGG | - | chr6_1:51446717-51446736 | Msa0887920:CDS | 35.0% | |
| AATTTCCTGAAATGAGGTTC+TGG | + | chr6_1:51446755-51446774 | None:intergenic | 35.0% | |
| CATTTACTTGGATAGTAGGA+TGG | + | chr6_1:51446793-51446812 | None:intergenic | 35.0% | |
| CAGAAGTTTATACACCGAAT+GGG | - | chr6_1:51446944-51446963 | Msa0887920:CDS | 35.0% | |
| AGAAGTTTATACACCGAATG+GGG | - | chr6_1:51446945-51446964 | Msa0887920:CDS | 35.0% | |
| ! | TCATCAACTTTTCCTTTTCG+AGG | + | chr6_1:51447168-51447187 | None:intergenic | 35.0% |
| CAAACAAAGACTGAAACACT+TGG | + | chr6_1:51447345-51447364 | None:intergenic | 35.0% | |
| CAAGTGTTTCAGTCTTTGTT+TGG | - | chr6_1:51447343-51447362 | Msa0887920:CDS | 35.0% | |
| TTGTTTGGTAAAGAAAAGCC+CGG | - | chr6_1:51447358-51447377 | Msa0887920:CDS | 35.0% | |
| !! | TCATACCTTTTCAGGAACAT+GGG | + | chr6_1:51447665-51447684 | None:intergenic | 35.0% |
| GAAAGTTGTAGAGAATCATG+GGG | - | chr6_1:51446480-51446499 | Msa0887920:CDS | 35.0% | |
| AGAATCATGGGGAAGATATA+TGG | - | chr6_1:51446491-51446510 | Msa0887920:CDS | 35.0% | |
| TTATTATTCCCGAGAAAGGA+AGG | - | chr6_1:51446609-51446628 | Msa0887920:CDS | 35.0% | |
| TCTGCCATATTCAACCTTAA+AGG | - | chr6_1:51446700-51446719 | Msa0887920:CDS | 35.0% | |
| GTGCTTTAACCTATCCTTTA+AGG | + | chr6_1:51446717-51446736 | None:intergenic | 35.0% | |
| TAAAGGATAGGTTAAAGCAC+AGG | - | chr6_1:51446717-51446736 | Msa0887920:CDS | 35.0% | |
| AATTTCCTGAAATGAGGTTC+TGG | + | chr6_1:51446755-51446774 | None:intergenic | 35.0% | |
| CATTTACTTGGATAGTAGGA+TGG | + | chr6_1:51446793-51446812 | None:intergenic | 35.0% | |
| CAGAAGTTTATACACCGAAT+GGG | - | chr6_1:51446944-51446963 | Msa0887920:CDS | 35.0% | |
| AGAAGTTTATACACCGAATG+GGG | - | chr6_1:51446945-51446964 | Msa0887920:CDS | 35.0% | |
| ! | TCATCAACTTTTCCTTTTCG+AGG | + | chr6_1:51447168-51447187 | None:intergenic | 35.0% |
| CAAACAAAGACTGAAACACT+TGG | + | chr6_1:51447345-51447364 | None:intergenic | 35.0% | |
| CAAGTGTTTCAGTCTTTGTT+TGG | - | chr6_1:51447343-51447362 | Msa0887920:CDS | 35.0% | |
| TTGTTTGGTAAAGAAAAGCC+CGG | - | chr6_1:51447358-51447377 | Msa0887920:CDS | 35.0% | |
| !! | TCATACCTTTTCAGGAACAT+GGG | + | chr6_1:51447665-51447684 | None:intergenic | 35.0% |
| AACACCTTTCCTTCCTTTCT+CGG | + | chr6_1:51446621-51446640 | None:intergenic | 40.0% | |
| AAGTACCAGAACCTCATTTC+AGG | - | chr6_1:51446747-51446766 | Msa0887920:CDS | 40.0% | |
| TGGCTTATCTTCTGCAATGT+AGG | + | chr6_1:51446899-51446918 | None:intergenic | 40.0% | |
| GCAGAAGTTTATACACCGAA+TGG | - | chr6_1:51446943-51446962 | Msa0887920:CDS | 40.0% | |
| !! | CAAAATTTTTCGGCCCCATT+CGG | + | chr6_1:51446961-51446980 | None:intergenic | 40.0% |
| AAAGACTGAAACACTTGGTC+TGG | + | chr6_1:51447340-51447359 | None:intergenic | 40.0% | |
| TCCAAAACAACGAACTCTAC+CGG | + | chr6_1:51447380-51447399 | None:intergenic | 40.0% | |
| AGGTGAAATGACTAGCATGA+AGG | - | chr6_1:51447465-51447484 | Msa0887920:CDS | 40.0% | |
| AAATGACTAGCATGAAGGAG+AGG | - | chr6_1:51447470-51447489 | Msa0887920:CDS | 40.0% | |
| ACGAGTCATTGACAAAGAAG+AGG | - | chr6_1:51447503-51447522 | Msa0887920:intron | 40.0% | |
| GTCATTGACAAAGAAGAGGA+TGG | - | chr6_1:51447507-51447526 | Msa0887920:intron | 40.0% | |
| AGATGATGTGGAGAACATGA+TGG | - | chr6_1:51447588-51447607 | Msa0887920:CDS | 40.0% | |
| GATGATGTGGAGAACATGAT+GGG | - | chr6_1:51447589-51447608 | Msa0887920:CDS | 40.0% | |
| ! | AACATGATGGGACATGCTTT+AGG | - | chr6_1:51447601-51447620 | Msa0887920:CDS | 40.0% |
| ATCAACCCATGTTCCTGAAA+AGG | - | chr6_1:51447657-51447676 | Msa0887920:CDS | 40.0% | |
| AACACCTTTCCTTCCTTTCT+CGG | + | chr6_1:51446621-51446640 | None:intergenic | 40.0% | |
| AAGTACCAGAACCTCATTTC+AGG | - | chr6_1:51446747-51446766 | Msa0887920:CDS | 40.0% | |
| TGGCTTATCTTCTGCAATGT+AGG | + | chr6_1:51446899-51446918 | None:intergenic | 40.0% | |
| GCAGAAGTTTATACACCGAA+TGG | - | chr6_1:51446943-51446962 | Msa0887920:CDS | 40.0% | |
| !! | CAAAATTTTTCGGCCCCATT+CGG | + | chr6_1:51446961-51446980 | None:intergenic | 40.0% |
| AAAGACTGAAACACTTGGTC+TGG | + | chr6_1:51447340-51447359 | None:intergenic | 40.0% | |
| TCCAAAACAACGAACTCTAC+CGG | + | chr6_1:51447380-51447399 | None:intergenic | 40.0% | |
| AGGTGAAATGACTAGCATGA+AGG | - | chr6_1:51447465-51447484 | Msa0887920:CDS | 40.0% | |
| AAATGACTAGCATGAAGGAG+AGG | - | chr6_1:51447470-51447489 | Msa0887920:CDS | 40.0% | |
| ACGAGTCATTGACAAAGAAG+AGG | - | chr6_1:51447503-51447522 | Msa0887920:intron | 40.0% | |
| GTCATTGACAAAGAAGAGGA+TGG | - | chr6_1:51447507-51447526 | Msa0887920:intron | 40.0% | |
| AGATGATGTGGAGAACATGA+TGG | - | chr6_1:51447588-51447607 | Msa0887920:CDS | 40.0% | |
| GATGATGTGGAGAACATGAT+GGG | - | chr6_1:51447589-51447608 | Msa0887920:CDS | 40.0% | |
| ! | AACATGATGGGACATGCTTT+AGG | - | chr6_1:51447601-51447620 | Msa0887920:CDS | 40.0% |
| ATCAACCCATGTTCCTGAAA+AGG | - | chr6_1:51447657-51447676 | Msa0887920:CDS | 40.0% | |
| ATTCCCGAGAAAGGAAGGAA+AGG | - | chr6_1:51446614-51446633 | Msa0887920:CDS | 45.0% | |
| ACACCTTTCCTTCCTTTCTC+GGG | + | chr6_1:51446620-51446639 | None:intergenic | 45.0% | |
| ! | TGAGGTTCTGGTACTTCTTC+AGG | + | chr6_1:51446743-51446762 | None:intergenic | 45.0% |
| ! | ACCTGAAAAGCGTGCAAAGA+AGG | - | chr6_1:51447092-51447111 | Msa0887920:intron | 45.0% |
| ! | TCCTTCTTTGCACGCTTTTC+AGG | + | chr6_1:51447096-51447115 | None:intergenic | 45.0% |
| AAGCGTGCAAAGAAGGATGA+CGG | - | chr6_1:51447099-51447118 | Msa0887920:intron | 45.0% | |
| GAAACACGTCAACCTCGAAA+AGG | - | chr6_1:51447153-51447172 | Msa0887920:CDS | 45.0% | |
| CTGGAGACTGATTGGAATCT+TGG | + | chr6_1:51447321-51447340 | None:intergenic | 45.0% | |
| CCAAAACAACGAACTCTACC+GGG | + | chr6_1:51447379-51447398 | None:intergenic | 45.0% | |
| ATTCCCGAGAAAGGAAGGAA+AGG | - | chr6_1:51446614-51446633 | Msa0887920:CDS | 45.0% | |
| ACACCTTTCCTTCCTTTCTC+GGG | + | chr6_1:51446620-51446639 | None:intergenic | 45.0% | |
| ! | TGAGGTTCTGGTACTTCTTC+AGG | + | chr6_1:51446743-51446762 | None:intergenic | 45.0% |
| ! | ACCTGAAAAGCGTGCAAAGA+AGG | - | chr6_1:51447092-51447111 | Msa0887920:intron | 45.0% |
| ! | TCCTTCTTTGCACGCTTTTC+AGG | + | chr6_1:51447096-51447115 | None:intergenic | 45.0% |
| AAGCGTGCAAAGAAGGATGA+CGG | - | chr6_1:51447099-51447118 | Msa0887920:intron | 45.0% | |
| GAAACACGTCAACCTCGAAA+AGG | - | chr6_1:51447153-51447172 | Msa0887920:CDS | 45.0% | |
| CTGGAGACTGATTGGAATCT+TGG | + | chr6_1:51447321-51447340 | None:intergenic | 45.0% | |
| CCAAAACAACGAACTCTACC+GGG | + | chr6_1:51447379-51447398 | None:intergenic | 45.0% | |
| ATGTTTCTTGGCACTGTCGC+TGG | - | chr6_1:51446418-51446437 | Msa0887920:CDS | 50.0% | |
| TGTTTCTTGGCACTGTCGCT+GGG | - | chr6_1:51446419-51446438 | Msa0887920:CDS | 50.0% | |
| AGCGTGCAAAGAAGGATGAC+GGG | - | chr6_1:51447100-51447119 | Msa0887920:intron | 50.0% | |
| CACTTGGTCTGGAGACTGAT+TGG | + | chr6_1:51447329-51447348 | None:intergenic | 50.0% | |
| ! | CCCGGTAGAGTTCGTTGTTT+TGG | - | chr6_1:51447376-51447395 | Msa0887920:CDS | 50.0% |
| GACTAGCATGAAGGAGAGGA+TGG | - | chr6_1:51447474-51447493 | Msa0887920:CDS | 50.0% | |
| !! | CATGGGTTGATGCAGACGAA+TGG | + | chr6_1:51447648-51447667 | None:intergenic | 50.0% |
| ATGTTTCTTGGCACTGTCGC+TGG | - | chr6_1:51446418-51446437 | Msa0887920:CDS | 50.0% | |
| TGTTTCTTGGCACTGTCGCT+GGG | - | chr6_1:51446419-51446438 | Msa0887920:CDS | 50.0% | |
| AGCGTGCAAAGAAGGATGAC+GGG | - | chr6_1:51447100-51447119 | Msa0887920:intron | 50.0% | |
| CACTTGGTCTGGAGACTGAT+TGG | + | chr6_1:51447329-51447348 | None:intergenic | 50.0% | |
| ! | CCCGGTAGAGTTCGTTGTTT+TGG | - | chr6_1:51447376-51447395 | Msa0887920:CDS | 50.0% |
| GACTAGCATGAAGGAGAGGA+TGG | - | chr6_1:51447474-51447493 | Msa0887920:CDS | 50.0% | |
| !! | CATGGGTTGATGCAGACGAA+TGG | + | chr6_1:51447648-51447667 | None:intergenic | 50.0% |
| GCGTGCAAAGAAGGATGACG+GGG | - | chr6_1:51447101-51447120 | Msa0887920:intron | 55.0% | |
| !! | TGCAAAGAAGGATGACGGGG+AGG | - | chr6_1:51447104-51447123 | Msa0887920:CDS | 55.0% |
| GCGTGCAAAGAAGGATGACG+GGG | - | chr6_1:51447101-51447120 | Msa0887920:intron | 55.0% | |
| !! | TGCAAAGAAGGATGACGGGG+AGG | - | chr6_1:51447104-51447123 | Msa0887920:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 51446418 | 51447684 | 51446418 | ID=Msa0887920;Name=Msa0887920 |
| chr6_1 | mRNA | 51446418 | 51447684 | 51446418 | ID=Msa0887920-mRNA-1;Parent=Msa0887920;Name=Msa0887920-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0|0|0.4|1|1|5|0|298 |
| chr6_1 | exon | 51447577 | 51447684 | 51447577 | ID=Msa0887920-mRNA-1:exon:10430;Parent=Msa0887920-mRNA-1 |
| chr6_1 | exon | 51447297 | 51447500 | 51447297 | ID=Msa0887920-mRNA-1:exon:10429;Parent=Msa0887920-mRNA-1 |
| chr6_1 | exon | 51447102 | 51447194 | 51447102 | ID=Msa0887920-mRNA-1:exon:10428;Parent=Msa0887920-mRNA-1 |
| chr6_1 | exon | 51446896 | 51447000 | 51446896 | ID=Msa0887920-mRNA-1:exon:10427;Parent=Msa0887920-mRNA-1 |
| chr6_1 | exon | 51446418 | 51446804 | 51446418 | ID=Msa0887920-mRNA-1:exon:10426;Parent=Msa0887920-mRNA-1 |
| chr6_1 | CDS | 51447577 | 51447684 | 51447577 | ID=Msa0887920-mRNA-1:cds;Parent=Msa0887920-mRNA-1 |
| chr6_1 | CDS | 51447297 | 51447500 | 51447297 | ID=Msa0887920-mRNA-1:cds;Parent=Msa0887920-mRNA-1 |
| chr6_1 | CDS | 51447102 | 51447194 | 51447102 | ID=Msa0887920-mRNA-1:cds;Parent=Msa0887920-mRNA-1 |
| chr6_1 | CDS | 51446896 | 51447000 | 51446896 | ID=Msa0887920-mRNA-1:cds;Parent=Msa0887920-mRNA-1 |
| chr6_1 | CDS | 51446418 | 51446804 | 51446418 | ID=Msa0887920-mRNA-1:cds;Parent=Msa0887920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
