Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287820 | XP_013462889.1 | 87.640 | 89 | 11 | 0 | 75 | 163 | 85 | 173 | 5.73e-42 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287820 | A0A072V4L2 | 87.640 | 89 | 11 | 0 | 75 | 163 | 85 | 173 | 2.74e-42 | 160 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102070 | Msa1287820 | 0.812789 | 3.552942e-51 | -8.615850e-47 |
| Msa0678930 | Msa1287820 | 0.824481 | 7.885773e-54 | -8.615850e-47 |
| Msa0726140 | Msa1287820 | 0.830371 | 3.049553e-55 | -8.615850e-47 |
| Msa0729800 | Msa1287820 | 0.804788 | 1.825924e-49 | -8.615850e-47 |
| Msa0733290 | Msa1287820 | 0.825682 | 4.102882e-54 | -8.615850e-47 |
| Msa0741990 | Msa1287820 | 0.810223 | 1.282782e-50 | -8.615850e-47 |
| Msa0743810 | Msa1287820 | 0.867456 | 1.350610e-65 | -8.615850e-47 |
| Msa0745060 | Msa1287820 | 0.844514 | 7.212963e-59 | -8.615850e-47 |
| Msa0767720 | Msa1287820 | 0.806893 | 6.592448e-50 | -8.615850e-47 |
| Msa0783160 | Msa1287820 | 0.821684 | 3.541688e-53 | -8.615850e-47 |
| Msa0787600 | Msa1287820 | 0.825942 | 3.560346e-54 | -8.615850e-47 |
| Msa0808010 | Msa1287820 | 0.819791 | 9.647170e-53 | -8.615850e-47 |
| Msa0808020 | Msa1287820 | 0.813348 | 2.679105e-51 | -8.615850e-47 |
| Msa0811080 | Msa1287820 | 0.802530 | 5.370860e-49 | -8.615850e-47 |
| Msa0825860 | Msa1287820 | 0.857590 | 1.471565e-62 | -8.615850e-47 |
| Msa0145750 | Msa1287820 | 0.870653 | 1.240172e-66 | -8.615850e-47 |
| Msa0153910 | Msa1287820 | 0.812262 | 4.632136e-51 | -8.615850e-47 |
| Msa0227480 | Msa1287820 | 0.803369 | 3.602179e-49 | -8.615850e-47 |
| Msa0232850 | Msa1287820 | 0.827565 | 1.458797e-54 | -8.615850e-47 |
| Msa0235140 | Msa1287820 | 0.827364 | 1.629493e-54 | -8.615850e-47 |
| Msa1269670 | Msa1287820 | 0.841110 | 5.796564e-58 | -8.615850e-47 |
| Msa1270230 | Msa1287820 | 0.833388 | 5.489009e-56 | -8.615850e-47 |
| Msa1270240 | Msa1287820 | 0.832106 | 1.142462e-55 | -8.615850e-47 |
| Msa1270270 | Msa1287820 | 0.827234 | 1.750949e-54 | -8.615850e-47 |
| Msa1283330 | Msa1287820 | 0.845035 | 5.219189e-59 | -8.615850e-47 |
| Msa1285930 | Msa1287820 | 0.890593 | 8.560823e-74 | -8.615850e-47 |
| Msa1287800 | Msa1287820 | 0.880982 | 3.504134e-70 | -8.615850e-47 |
| Msa1287810 | Msa1287820 | 0.889844 | 1.683229e-73 | -8.615850e-47 |
| Msa1287820 | Msa1287830 | 0.829800 | 4.203663e-55 | -8.615850e-47 |
| Msa1287820 | Msa1289430 | 0.820955 | 5.217665e-53 | -8.615850e-47 |
| Msa1287820 | Msa1297210 | 0.800520 | 1.386722e-48 | -8.615850e-47 |
| Msa1287820 | Msa1320300 | 0.823731 | 1.182591e-53 | -8.615850e-47 |
| Msa1287820 | Msa1340590 | 0.806972 | 6.343823e-50 | -8.615850e-47 |
| Msa1287820 | Msa1397580 | 0.806308 | 8.761841e-50 | -8.615850e-47 |
| Msa1287820 | Msa1404000 | 0.816802 | 4.582785e-52 | -8.615850e-47 |
| Msa1287820 | Msa1415310 | 0.830606 | 2.671040e-55 | -8.615850e-47 |
| Msa1287820 | Msa1422180 | 0.825787 | 3.873728e-54 | -8.615850e-47 |
| Msa1287820 | Msa1433120 | 0.808007 | 3.826757e-50 | -8.615850e-47 |
| Msa0365500 | Msa1287820 | 0.802168 | 6.375561e-49 | -8.615850e-47 |
| Msa0384800 | Msa1287820 | 0.825793 | 3.861199e-54 | -8.615850e-47 |
| Msa0406120 | Msa1287820 | 0.818712 | 1.698719e-52 | -8.615850e-47 |
| Msa0414410 | Msa1287820 | 0.807362 | 5.244690e-50 | -8.615850e-47 |
| Msa0414420 | Msa1287820 | 0.860317 | 2.246961e-63 | -8.615850e-47 |
| Msa0438620 | Msa1287820 | 0.803478 | 3.420846e-49 | -8.615850e-47 |
| Msa0450000 | Msa1287820 | 0.805259 | 1.455117e-49 | -8.615850e-47 |
| Msa0451730 | Msa1287820 | 0.803869 | 2.837043e-49 | -8.615850e-47 |
| Msa0452900 | Msa1287820 | 0.841646 | 4.189553e-58 | -8.615850e-47 |
| Msa0454910 | Msa1287820 | 0.824529 | 7.685239e-54 | -8.615850e-47 |
| Msa0459160 | Msa1287820 | 0.814053 | 1.873767e-51 | -8.615850e-47 |
| Msa0989060 | Msa1287820 | 0.872067 | 4.226663e-67 | -8.615850e-47 |
| Msa1016280 | Msa1287820 | 0.822275 | 2.585030e-53 | -8.615850e-47 |
| Msa1025360 | Msa1287820 | 0.859323 | 4.478070e-63 | -8.615850e-47 |
| Msa1025370 | Msa1287820 | 0.850456 | 1.678455e-60 | -8.615850e-47 |
| Msa1044830 | Msa1287820 | 0.847225 | 1.323139e-59 | -8.615850e-47 |
| Msa1044840 | Msa1287820 | 0.860047 | 2.711341e-63 | -8.615850e-47 |
| Msa1092990 | Msa1287820 | 0.836265 | 1.035523e-56 | -8.615850e-47 |
| Msa1100980 | Msa1287820 | 0.846875 | 1.650278e-59 | -8.615850e-47 |
| Msa0267000 | Msa1287820 | 0.838646 | 2.540681e-57 | -8.615850e-47 |
| Msa0267010 | Msa1287820 | 0.853536 | 2.239213e-61 | -8.615850e-47 |
| Msa0270520 | Msa1287820 | 0.815027 | 1.140658e-51 | -8.615850e-47 |
| Msa0313760 | Msa1287820 | 0.816802 | 4.583419e-52 | -8.615850e-47 |
| Msa0342240 | Msa1287820 | 0.829485 | 5.012764e-55 | -8.615850e-47 |
| Msa0360510 | Msa1287820 | 0.803358 | 3.621411e-49 | -8.615850e-47 |
| Msa0363300 | Msa1287820 | 0.809579 | 1.765124e-50 | -8.615850e-47 |
| Msa1109440 | Msa1287820 | 0.821350 | 4.229853e-53 | -8.615850e-47 |
| Msa1121200 | Msa1287820 | 0.800839 | 1.193769e-48 | -8.615850e-47 |
| Msa1135740 | Msa1287820 | 0.829527 | 4.897798e-55 | -8.615850e-47 |
| Msa1146110 | Msa1287820 | 0.814972 | 1.173434e-51 | -8.615850e-47 |
| Msa1150370 | Msa1287820 | 0.802108 | 6.560321e-49 | -8.615850e-47 |
| Msa1173920 | Msa1287820 | 0.810590 | 1.068848e-50 | -8.615850e-47 |
| Msa1187940 | Msa1287820 | 0.834102 | 3.638040e-56 | -8.615850e-47 |
| Msa1187950 | Msa1287820 | 0.814112 | 1.818773e-51 | -8.615850e-47 |
| Msa1192640 | Msa1287820 | 0.870186 | 1.765231e-66 | -8.615850e-47 |
| Msa0502760 | Msa1287820 | 0.803796 | 2.937861e-49 | -8.615850e-47 |
| Msa0548060 | Msa1287820 | 0.805767 | 1.138558e-49 | -8.615850e-47 |
| Msa0564890 | Msa1287820 | 0.865853 | 4.367941e-65 | -8.615850e-47 |
| Msa0846330 | Msa1287820 | 0.804445 | 2.153099e-49 | -8.615850e-47 |
| Msa0865320 | Msa1287820 | 0.838103 | 3.508188e-57 | -8.615850e-47 |
| Msa0885290 | Msa1287820 | 0.852198 | 5.402111e-61 | -8.615850e-47 |
| Msa0887920 | Msa1287820 | 0.826691 | 2.360733e-54 | -8.615850e-47 |
| Msa0888370 | Msa1287820 | 0.818875 | 1.560405e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287820 | MtrunA17_Chr2g0289121 | 85.714 | 91 | 11 | 1 | 75 | 163 | 85 | 175 | 3.07e-44 | 155 |
| Msa1287820 | MtrunA17_Chr2g0289041 | 100.000 | 43 | 0 | 0 | 30 | 72 | 44 | 86 | 3.78e-23 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 16 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAATTCTTACGACAAAA+TGG | 0.189117 | 8_3:+39418986 | None:intergenic |
| GATATATCCAATTGACATAT+CGG | 0.338734 | 8_3:+39419021 | None:intergenic |
| ATTACAATTAGACGTCTAAC+AGG | 0.374834 | 8_3:-39418841 | Msa1287820:intron |
| TTCAATTCTTACGACAAAAT+GGG | 0.416635 | 8_3:+39418987 | None:intergenic |
| AGGAAAGTTAGATAATATAA+TGG | 0.431139 | 8_3:-39417163 | Msa1287820:intron |
| GTAATAAATTAATCATATAT+CGG | 0.434945 | 8_3:+39418786 | None:intergenic |
| ATATATCCAATTGACATATC+GGG | 0.438453 | 8_3:+39419022 | None:intergenic |
| AGGTACCCCGATATGTCAAT+TGG | 0.472413 | 8_3:-39419028 | Msa1287820:CDS |
| ATGTCATCAGTGCTTGAGAA+AGG | 0.520090 | 8_3:-39417004 | Msa1287820:CDS |
| TGAAGATGAAGATGGTGAGG+AGG | 0.539147 | 8_3:-39417220 | Msa1287820:CDS |
| ATGACAAAGTCAAGAAGCAA+AGG | 0.583092 | 8_3:-39417183 | Msa1287820:CDS |
| TTTGTACAAGATACAAAATG+TGG | 0.624596 | 8_3:+39416976 | None:intergenic |
| GATTGAAGCTAAGATATACA+AGG | 0.633102 | 8_3:-39418717 | Msa1287820:intron |
| ATCAGTGCTTGAGAAAGGAT+AGG | 0.639946 | 8_3:-39416999 | Msa1287820:CDS |
| TATATCCAATTGACATATCG+GGG | 0.657276 | 8_3:+39419023 | None:intergenic |
| CAATTGGATATATCGCAGAG+AGG | 0.736464 | 8_3:-39419012 | Msa1287820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATAAATTAATCATATAT+CGG | + | chr8_3:39417311-39417330 | None:intergenic | 10.0% |
| !!! | TAATATAATTTAGAGTATAA+GGG | + | chr8_3:39418686-39418705 | None:intergenic | 10.0% |
| !!! | TAATATAATTTAGAGTATAA+GGG | - | chr8_3:39418686-39418705 | Msa1287820:intron | 10.0% |
| !! | GTAATAAATTAATCATATAT+CGG | + | chr8_3:39417311-39417330 | None:intergenic | 10.0% |
| !!! | TAATATAATTTAGAGTATAA+GGG | + | chr8_3:39418686-39418705 | None:intergenic | 10.0% |
| !!! | TAATATAATTTAGAGTATAA+GGG | - | chr8_3:39418686-39418705 | Msa1287820:intron | 10.0% |
| !! | TATTAGAGAAACAAATTTAA+GGG | + | chr8_3:39417192-39417211 | None:intergenic | 15.0% |
| !! | TTATTAGAGAAACAAATTTA+AGG | + | chr8_3:39417193-39417212 | None:intergenic | 15.0% |
| !!! | CTAATATAATTTAGAGTATA+AGG | + | chr8_3:39418685-39418704 | None:intergenic | 15.0% |
| !!! | ATTATTACATGTTTTATGTT+AGG | - | chr8_3:39417947-39417966 | Msa1287820:intron | 15.0% |
| !!! | ATTATTACATGTTTTATGTT+AGG | + | chr8_3:39417947-39417966 | None:intergenic | 15.0% |
| !!! | CTAATATAATTTAGAGTATA+AGG | - | chr8_3:39418685-39418704 | Msa1287820:intron | 15.0% |
| !! | TATTAGAGAAACAAATTTAA+GGG | + | chr8_3:39417192-39417211 | None:intergenic | 15.0% |
| !! | TTATTAGAGAAACAAATTTA+AGG | + | chr8_3:39417193-39417212 | None:intergenic | 15.0% |
| !!! | CTAATATAATTTAGAGTATA+AGG | + | chr8_3:39418685-39418704 | None:intergenic | 15.0% |
| !!! | ATTATTACATGTTTTATGTT+AGG | - | chr8_3:39417947-39417966 | Msa1287820:intron | 15.0% |
| !!! | ATTATTACATGTTTTATGTT+AGG | + | chr8_3:39417947-39417966 | None:intergenic | 15.0% |
| !!! | CTAATATAATTTAGAGTATA+AGG | - | chr8_3:39418685-39418704 | Msa1287820:intron | 15.0% |
| !!! | ATTTTTTGATTTTCGCATAT+AGG | - | chr8_3:39417046-39417065 | Msa1287820:intron | 20.0% |
| !!! | TCAAAAATTTGTTTAAGAGA+TGG | + | chr8_3:39417336-39417355 | None:intergenic | 20.0% |
| !!! | ATTTCATTTTGACAACTAAA+AGG | + | chr8_3:39417573-39417592 | None:intergenic | 20.0% |
| !! | AGGAAAATTGGATAATATAA+TGG | + | chr8_3:39417622-39417641 | None:intergenic | 20.0% |
| !!! | TTTTTCTTGGTTGTATATAT+GGG | - | chr8_3:39417832-39417851 | Msa1287820:intron | 20.0% |
| !! | TGGCAACTATAATTTATATA+TGG | - | chr8_3:39418037-39418056 | Msa1287820:intron | 20.0% |
| !! | TCCTAATTTATTCTTATAGT+AGG | - | chr8_3:39418206-39418225 | Msa1287820:intron | 20.0% |
| !! | TCCTACTATAAGAATAAATT+AGG | + | chr8_3:39418210-39418229 | None:intergenic | 20.0% |
| !! | TGGCAACTATAATTTATATA+TGG | + | chr8_3:39418037-39418056 | None:intergenic | 20.0% |
| !!! | TTTTTCTTGGTTGTATATAT+GGG | + | chr8_3:39417832-39417851 | None:intergenic | 20.0% |
| !! | AGGAAAGTTAGATAATATAA+TGG | - | chr8_3:39418931-39418950 | Msa1287820:intron | 20.0% |
| !!! | TTCTTTTATGACAACTATTT+TGG | - | chr8_3:39418981-39419000 | Msa1287820:CDS | 20.0% |
| !! | AACTTGTGTTAAATAATTAC+AGG | - | chr8_3:39419045-39419064 | Msa1287820:intron | 20.0% |
| !!! | ACATGTTTTGATATTTTGTT+TGG | + | chr8_3:39419074-39419093 | None:intergenic | 20.0% |
| !!! | ATTTTTTGATTTTCGCATAT+AGG | - | chr8_3:39417046-39417065 | Msa1287820:intron | 20.0% |
| !!! | TCAAAAATTTGTTTAAGAGA+TGG | + | chr8_3:39417336-39417355 | None:intergenic | 20.0% |
| !!! | ATTTCATTTTGACAACTAAA+AGG | + | chr8_3:39417573-39417592 | None:intergenic | 20.0% |
| !! | AGGAAAATTGGATAATATAA+TGG | + | chr8_3:39417622-39417641 | None:intergenic | 20.0% |
| !!! | TTTTTCTTGGTTGTATATAT+GGG | - | chr8_3:39417832-39417851 | Msa1287820:intron | 20.0% |
| !! | TGGCAACTATAATTTATATA+TGG | - | chr8_3:39418037-39418056 | Msa1287820:intron | 20.0% |
| !! | TCCTAATTTATTCTTATAGT+AGG | - | chr8_3:39418206-39418225 | Msa1287820:intron | 20.0% |
| !! | TCCTACTATAAGAATAAATT+AGG | + | chr8_3:39418210-39418229 | None:intergenic | 20.0% |
| !! | TGGCAACTATAATTTATATA+TGG | + | chr8_3:39418037-39418056 | None:intergenic | 20.0% |
| !!! | TTTTTCTTGGTTGTATATAT+GGG | + | chr8_3:39417832-39417851 | None:intergenic | 20.0% |
| !! | AGGAAAGTTAGATAATATAA+TGG | - | chr8_3:39418931-39418950 | Msa1287820:intron | 20.0% |
| !!! | TTCTTTTATGACAACTATTT+TGG | - | chr8_3:39418981-39419000 | Msa1287820:CDS | 20.0% |
| !! | AACTTGTGTTAAATAATTAC+AGG | - | chr8_3:39419045-39419064 | Msa1287820:intron | 20.0% |
| !!! | ACATGTTTTGATATTTTGTT+TGG | + | chr8_3:39419074-39419093 | None:intergenic | 20.0% |
| ! | TATTAACAAATACATGACCT+TGG | + | chr8_3:39416991-39417010 | None:intergenic | 25.0% |
| ! | ATATATCCAATTGACATATC+GGG | + | chr8_3:39417075-39417094 | None:intergenic | 25.0% |
| ! | GATATATCCAATTGACATAT+CGG | + | chr8_3:39417076-39417095 | None:intergenic | 25.0% |
| ! | TTCAATTCTTACGACAAAAT+GGG | + | chr8_3:39417110-39417129 | None:intergenic | 25.0% |
| ! | TTTCAATTCTTACGACAAAA+TGG | + | chr8_3:39417111-39417130 | None:intergenic | 25.0% |
| !!! | AATATTTGCTTTTGTTCAAG+AGG | - | chr8_3:39417135-39417154 | Msa1287820:intron | 25.0% |
| !! | CTTTTTCTTGGTTGTATATA+TGG | - | chr8_3:39417831-39417850 | Msa1287820:intron | 25.0% |
| ! | GATACACACAAATTAACATT+CGG | + | chr8_3:39418331-39418350 | None:intergenic | 25.0% |
| !! | CTCTATACATGTAATTTGTA+TGG | - | chr8_3:39418542-39418561 | Msa1287820:intron | 25.0% |
| !! | CTTTTTCTTGGTTGTATATA+TGG | + | chr8_3:39417831-39417850 | None:intergenic | 25.0% |
| !!! | AGTACGATAGTTTTTTGATT+TGG | + | chr8_3:39418810-39418829 | None:intergenic | 25.0% |
| ! | AGTTGCATTTAATTAAGCTA+TGG | + | chr8_3:39419029-39419048 | None:intergenic | 25.0% |
| ! | TTTGTACAAGATACAAAATG+TGG | + | chr8_3:39419121-39419140 | None:intergenic | 25.0% |
| ! | TATTAACAAATACATGACCT+TGG | + | chr8_3:39416991-39417010 | None:intergenic | 25.0% |
| ! | ATATATCCAATTGACATATC+GGG | + | chr8_3:39417075-39417094 | None:intergenic | 25.0% |
| ! | GATATATCCAATTGACATAT+CGG | + | chr8_3:39417076-39417095 | None:intergenic | 25.0% |
| ! | TTCAATTCTTACGACAAAAT+GGG | + | chr8_3:39417110-39417129 | None:intergenic | 25.0% |
| ! | TTTCAATTCTTACGACAAAA+TGG | + | chr8_3:39417111-39417130 | None:intergenic | 25.0% |
| !!! | AATATTTGCTTTTGTTCAAG+AGG | - | chr8_3:39417135-39417154 | Msa1287820:intron | 25.0% |
| !! | CTTTTTCTTGGTTGTATATA+TGG | - | chr8_3:39417831-39417850 | Msa1287820:intron | 25.0% |
| ! | GATACACACAAATTAACATT+CGG | + | chr8_3:39418331-39418350 | None:intergenic | 25.0% |
| !! | CTCTATACATGTAATTTGTA+TGG | - | chr8_3:39418542-39418561 | Msa1287820:intron | 25.0% |
| !! | CTTTTTCTTGGTTGTATATA+TGG | + | chr8_3:39417831-39417850 | None:intergenic | 25.0% |
| !!! | AGTACGATAGTTTTTTGATT+TGG | + | chr8_3:39418810-39418829 | None:intergenic | 25.0% |
| ! | AGTTGCATTTAATTAAGCTA+TGG | + | chr8_3:39419029-39419048 | None:intergenic | 25.0% |
| ! | TTTGTACAAGATACAAAATG+TGG | + | chr8_3:39419121-39419140 | None:intergenic | 25.0% |
| ACATCTAAATAACCATTCCA+AGG | - | chr8_3:39416971-39416990 | Msa1287820:CDS | 30.0% | |
| TATATCCAATTGACATATCG+GGG | + | chr8_3:39417074-39417093 | None:intergenic | 30.0% | |
| ATTACAATTAGACGTCTAAC+AGG | - | chr8_3:39417253-39417272 | Msa1287820:CDS | 30.0% | |
| GATTGAAGCTAAGATATACA+AGG | - | chr8_3:39417377-39417396 | Msa1287820:intron | 30.0% | |
| TAACAATAAGCTCTCATATC+AGG | - | chr8_3:39417466-39417485 | Msa1287820:intron | 30.0% | |
| TTCAAGAAGCAAAGGAAAAT+TGG | + | chr8_3:39417634-39417653 | None:intergenic | 30.0% | |
| AAGACAAATTCAAGAAGCAA+AGG | + | chr8_3:39417642-39417661 | None:intergenic | 30.0% | |
| !! | TTTTGAAGATGAAGAAGATG+AGG | + | chr8_3:39417682-39417701 | None:intergenic | 30.0% |
| ACTACGATAGTTCTTTGATT+TGG | - | chr8_3:39417743-39417762 | Msa1287820:intron | 30.0% | |
| !! | TTCTCTGTTTCTCTTTTTCT+TGG | - | chr8_3:39417819-39417838 | Msa1287820:intron | 30.0% |
| ! | ATGTTTTATGTTAGGTCACT+TGG | - | chr8_3:39417955-39417974 | Msa1287820:intron | 30.0% |
| ! | TGTTTTATGTTAGGTCACTT+GGG | - | chr8_3:39417956-39417975 | Msa1287820:intron | 30.0% |
| CTCTATACATGTAATGTGTA+TGG | + | chr8_3:39418010-39418029 | None:intergenic | 30.0% | |
| TACATGTATAGAGATCTTGT+TGG | - | chr8_3:39418017-39418036 | Msa1287820:intron | 30.0% | |
| TTCTTATAGTAGGAAACACA+TGG | - | chr8_3:39418216-39418235 | Msa1287820:intron | 30.0% | |
| TGCATCTAGATAACAAGAAT+TGG | - | chr8_3:39418359-39418378 | Msa1287820:intron | 30.0% | |
| TACATGTATAGAGATCTTGT+TGG | + | chr8_3:39418017-39418036 | None:intergenic | 30.0% | |
| ! | TGTTTTATGTTAGGTCACTT+GGG | + | chr8_3:39417956-39417975 | None:intergenic | 30.0% |
| ! | ATGTTTTATGTTAGGTCACT+TGG | + | chr8_3:39417955-39417974 | None:intergenic | 30.0% |
| !! | TTCTCTGTTTCTCTTTTTCT+TGG | + | chr8_3:39417819-39417838 | None:intergenic | 30.0% |
| !! | AACACTTTTGAAGATGAAGA+TGG | - | chr8_3:39418866-39418885 | Msa1287820:intron | 30.0% |
| ACATCTAAATAACCATTCCA+AGG | - | chr8_3:39416971-39416990 | Msa1287820:CDS | 30.0% | |
| TATATCCAATTGACATATCG+GGG | + | chr8_3:39417074-39417093 | None:intergenic | 30.0% | |
| ATTACAATTAGACGTCTAAC+AGG | - | chr8_3:39417253-39417272 | Msa1287820:CDS | 30.0% | |
| GATTGAAGCTAAGATATACA+AGG | - | chr8_3:39417377-39417396 | Msa1287820:intron | 30.0% | |
| TAACAATAAGCTCTCATATC+AGG | - | chr8_3:39417466-39417485 | Msa1287820:intron | 30.0% | |
| TTCAAGAAGCAAAGGAAAAT+TGG | + | chr8_3:39417634-39417653 | None:intergenic | 30.0% | |
| AAGACAAATTCAAGAAGCAA+AGG | + | chr8_3:39417642-39417661 | None:intergenic | 30.0% | |
| !! | TTTTGAAGATGAAGAAGATG+AGG | + | chr8_3:39417682-39417701 | None:intergenic | 30.0% |
| ACTACGATAGTTCTTTGATT+TGG | - | chr8_3:39417743-39417762 | Msa1287820:intron | 30.0% | |
| !! | TTCTCTGTTTCTCTTTTTCT+TGG | - | chr8_3:39417819-39417838 | Msa1287820:intron | 30.0% |
| ! | ATGTTTTATGTTAGGTCACT+TGG | - | chr8_3:39417955-39417974 | Msa1287820:intron | 30.0% |
| ! | TGTTTTATGTTAGGTCACTT+GGG | - | chr8_3:39417956-39417975 | Msa1287820:intron | 30.0% |
| CTCTATACATGTAATGTGTA+TGG | + | chr8_3:39418010-39418029 | None:intergenic | 30.0% | |
| TACATGTATAGAGATCTTGT+TGG | - | chr8_3:39418017-39418036 | Msa1287820:intron | 30.0% | |
| TTCTTATAGTAGGAAACACA+TGG | - | chr8_3:39418216-39418235 | Msa1287820:intron | 30.0% | |
| TGCATCTAGATAACAAGAAT+TGG | - | chr8_3:39418359-39418378 | Msa1287820:intron | 30.0% | |
| TACATGTATAGAGATCTTGT+TGG | + | chr8_3:39418017-39418036 | None:intergenic | 30.0% | |
| ! | TGTTTTATGTTAGGTCACTT+GGG | + | chr8_3:39417956-39417975 | None:intergenic | 30.0% |
| ! | ATGTTTTATGTTAGGTCACT+TGG | + | chr8_3:39417955-39417974 | None:intergenic | 30.0% |
| !! | TTCTCTGTTTCTCTTTTTCT+TGG | + | chr8_3:39417819-39417838 | None:intergenic | 30.0% |
| !! | AACACTTTTGAAGATGAAGA+TGG | - | chr8_3:39418866-39418885 | Msa1287820:intron | 30.0% |
| ACAAATACATGACCTTGGAA+TGG | + | chr8_3:39416986-39417005 | None:intergenic | 35.0% | |
| TTGTTCAAGAGGAATGATCA+AGG | - | chr8_3:39417146-39417165 | Msa1287820:intron | 35.0% | |
| TTATCATGACATGGAGTTTG+TGG | + | chr8_3:39417516-39417535 | None:intergenic | 35.0% | |
| ACAAACTCCATGTCATGATA+AGG | - | chr8_3:39417515-39417534 | Msa1287820:intron | 35.0% | |
| ! | ATGATAAGGAGCGTATCTAT+TGG | - | chr8_3:39417529-39417548 | Msa1287820:intron | 35.0% |
| TTATATATGGAGCTGAAAGC+TGG | - | chr8_3:39418050-39418069 | Msa1287820:intron | 35.0% | |
| AGAATGTGTGAGAGATCTTT+AGG | - | chr8_3:39418088-39418107 | Msa1287820:intron | 35.0% | |
| TATGGTTTCTTCAACAGGTA+TGG | + | chr8_3:39418424-39418443 | None:intergenic | 35.0% | |
| ATACCTGTTGAAGAAACCAT+AGG | - | chr8_3:39418127-39418146 | Msa1287820:intron | 35.0% | |
| AAAGTGTGATTAACCTCCTA+TGG | + | chr8_3:39418406-39418425 | None:intergenic | 35.0% | |
| ! | CATGGATGATTTGAGATAGA+AGG | - | chr8_3:39418234-39418253 | Msa1287820:intron | 35.0% |
| GATAGAAGGATATTTCAGTG+TGG | - | chr8_3:39418248-39418267 | Msa1287820:intron | 35.0% | |
| ! | TCTTGTTATCTAGATGCATG+AGG | + | chr8_3:39418357-39418376 | None:intergenic | 35.0% |
| AAAGTGTGATTAACCTCCTA+TGG | - | chr8_3:39418406-39418425 | Msa1287820:intron | 35.0% | |
| ATACCTGTTGAAGAAACCAT+AGG | + | chr8_3:39418127-39418146 | None:intergenic | 35.0% | |
| TATGGTTTCTTCAACAGGTA+TGG | - | chr8_3:39418424-39418443 | Msa1287820:intron | 35.0% | |
| AGAATGTGTGAGAGATCTTT+AGG | + | chr8_3:39418088-39418107 | None:intergenic | 35.0% | |
| TTATATATGGAGCTGAAAGC+TGG | + | chr8_3:39418050-39418069 | None:intergenic | 35.0% | |
| ! | GTTTTATGTTAGGTCACTTG+GGG | + | chr8_3:39417957-39417976 | None:intergenic | 35.0% |
| !! | TTTTGAAGATGAAGATGGTG+AGG | - | chr8_3:39418871-39418890 | Msa1287820:intron | 35.0% |
| ATGACAAAGTCAAGAAGCAA+AGG | - | chr8_3:39418911-39418930 | Msa1287820:intron | 35.0% | |
| ACAAATACATGACCTTGGAA+TGG | + | chr8_3:39416986-39417005 | None:intergenic | 35.0% | |
| TTGTTCAAGAGGAATGATCA+AGG | - | chr8_3:39417146-39417165 | Msa1287820:intron | 35.0% | |
| TTATCATGACATGGAGTTTG+TGG | + | chr8_3:39417516-39417535 | None:intergenic | 35.0% | |
| ACAAACTCCATGTCATGATA+AGG | - | chr8_3:39417515-39417534 | Msa1287820:intron | 35.0% | |
| ! | ATGATAAGGAGCGTATCTAT+TGG | - | chr8_3:39417529-39417548 | Msa1287820:intron | 35.0% |
| TTATATATGGAGCTGAAAGC+TGG | - | chr8_3:39418050-39418069 | Msa1287820:intron | 35.0% | |
| AGAATGTGTGAGAGATCTTT+AGG | - | chr8_3:39418088-39418107 | Msa1287820:intron | 35.0% | |
| TATGGTTTCTTCAACAGGTA+TGG | + | chr8_3:39418424-39418443 | None:intergenic | 35.0% | |
| ATACCTGTTGAAGAAACCAT+AGG | - | chr8_3:39418127-39418146 | Msa1287820:intron | 35.0% | |
| AAAGTGTGATTAACCTCCTA+TGG | + | chr8_3:39418406-39418425 | None:intergenic | 35.0% | |
| ! | CATGGATGATTTGAGATAGA+AGG | - | chr8_3:39418234-39418253 | Msa1287820:intron | 35.0% |
| GATAGAAGGATATTTCAGTG+TGG | - | chr8_3:39418248-39418267 | Msa1287820:intron | 35.0% | |
| ! | TCTTGTTATCTAGATGCATG+AGG | + | chr8_3:39418357-39418376 | None:intergenic | 35.0% |
| AAAGTGTGATTAACCTCCTA+TGG | - | chr8_3:39418406-39418425 | Msa1287820:intron | 35.0% | |
| ATACCTGTTGAAGAAACCAT+AGG | + | chr8_3:39418127-39418146 | None:intergenic | 35.0% | |
| TATGGTTTCTTCAACAGGTA+TGG | - | chr8_3:39418424-39418443 | Msa1287820:intron | 35.0% | |
| AGAATGTGTGAGAGATCTTT+AGG | + | chr8_3:39418088-39418107 | None:intergenic | 35.0% | |
| TTATATATGGAGCTGAAAGC+TGG | + | chr8_3:39418050-39418069 | None:intergenic | 35.0% | |
| ! | GTTTTATGTTAGGTCACTTG+GGG | + | chr8_3:39417957-39417976 | None:intergenic | 35.0% |
| !! | TTTTGAAGATGAAGATGGTG+AGG | - | chr8_3:39418871-39418890 | Msa1287820:intron | 35.0% |
| ATGACAAAGTCAAGAAGCAA+AGG | - | chr8_3:39418911-39418930 | Msa1287820:intron | 35.0% | |
| CAATTGGATATATCGCAGAG+AGG | - | chr8_3:39417082-39417101 | Msa1287820:intron | 40.0% | |
| ATACGCTCCTTATCATGACA+TGG | + | chr8_3:39417525-39417544 | None:intergenic | 40.0% | |
| ATGTCATCAGTGCTTGAGAA+AGG | - | chr8_3:39419090-39419109 | Msa1287820:intron | 40.0% | |
| ATCAGTGCTTGAGAAAGGAT+AGG | - | chr8_3:39419095-39419114 | Msa1287820:intron | 40.0% | |
| CAATTGGATATATCGCAGAG+AGG | - | chr8_3:39417082-39417101 | Msa1287820:intron | 40.0% | |
| ATACGCTCCTTATCATGACA+TGG | + | chr8_3:39417525-39417544 | None:intergenic | 40.0% | |
| ATGTCATCAGTGCTTGAGAA+AGG | - | chr8_3:39419090-39419109 | Msa1287820:intron | 40.0% | |
| ATCAGTGCTTGAGAAAGGAT+AGG | - | chr8_3:39419095-39419114 | Msa1287820:intron | 40.0% | |
| AGGTACCCCGATATGTCAAT+TGG | - | chr8_3:39417066-39417085 | Msa1287820:intron | 45.0% | |
| !! | TTGGGTTGATCATGTGGAAG+TGG | - | chr8_3:39417974-39417993 | Msa1287820:intron | 45.0% |
| TGGAGCTGAAAGCTGGATTA+AGG | - | chr8_3:39418057-39418076 | Msa1287820:intron | 45.0% | |
| CCTCCTATGGTTTCTTCAAC+AGG | + | chr8_3:39418419-39418438 | None:intergenic | 45.0% | |
| CCTGTTGAAGAAACCATAGG+AGG | - | chr8_3:39418130-39418149 | Msa1287820:intron | 45.0% | |
| ACCTATAGCGACATGTGTCA+TGG | - | chr8_3:39418173-39418192 | Msa1287820:intron | 45.0% | |
| ACCATGACACATGTCGCTAT+AGG | + | chr8_3:39418177-39418196 | None:intergenic | 45.0% | |
| AATGAGAGTTCGCTTGACGA+TGG | - | chr8_3:39418271-39418290 | Msa1287820:intron | 45.0% | |
| CCTGTTGAAGAAACCATAGG+AGG | + | chr8_3:39418130-39418149 | None:intergenic | 45.0% | |
| CCTCCTATGGTTTCTTCAAC+AGG | - | chr8_3:39418419-39418438 | Msa1287820:intron | 45.0% | |
| TGGAGCTGAAAGCTGGATTA+AGG | + | chr8_3:39418057-39418076 | None:intergenic | 45.0% | |
| TGAAGATGAAGATGGTGAGG+AGG | - | chr8_3:39418874-39418893 | Msa1287820:intron | 45.0% | |
| AGGTACCCCGATATGTCAAT+TGG | - | chr8_3:39417066-39417085 | Msa1287820:intron | 45.0% | |
| !! | TTGGGTTGATCATGTGGAAG+TGG | - | chr8_3:39417974-39417993 | Msa1287820:intron | 45.0% |
| TGGAGCTGAAAGCTGGATTA+AGG | - | chr8_3:39418057-39418076 | Msa1287820:intron | 45.0% | |
| CCTCCTATGGTTTCTTCAAC+AGG | + | chr8_3:39418419-39418438 | None:intergenic | 45.0% | |
| CCTGTTGAAGAAACCATAGG+AGG | - | chr8_3:39418130-39418149 | Msa1287820:intron | 45.0% | |
| ACCTATAGCGACATGTGTCA+TGG | - | chr8_3:39418173-39418192 | Msa1287820:intron | 45.0% | |
| ACCATGACACATGTCGCTAT+AGG | + | chr8_3:39418177-39418196 | None:intergenic | 45.0% | |
| AATGAGAGTTCGCTTGACGA+TGG | - | chr8_3:39418271-39418290 | Msa1287820:intron | 45.0% | |
| CCTGTTGAAGAAACCATAGG+AGG | + | chr8_3:39418130-39418149 | None:intergenic | 45.0% | |
| CCTCCTATGGTTTCTTCAAC+AGG | - | chr8_3:39418419-39418438 | Msa1287820:intron | 45.0% | |
| TGGAGCTGAAAGCTGGATTA+AGG | + | chr8_3:39418057-39418076 | None:intergenic | 45.0% | |
| TGAAGATGAAGATGGTGAGG+AGG | - | chr8_3:39418874-39418893 | Msa1287820:intron | 45.0% | |
| !! | GGTCACTTGGGTTGATCATG+TGG | - | chr8_3:39417968-39417987 | Msa1287820:intron | 50.0% |
| GAGTTCGCTTGACGATGGTT+CGG | - | chr8_3:39418276-39418295 | Msa1287820:intron | 50.0% | |
| TTGGGGTGAACATGTGGAAG+TGG | + | chr8_3:39418578-39418597 | None:intergenic | 50.0% | |
| !! | GGTCACTTGGGTTGATCATG+TGG | - | chr8_3:39417968-39417987 | Msa1287820:intron | 50.0% |
| GAGTTCGCTTGACGATGGTT+CGG | - | chr8_3:39418276-39418295 | Msa1287820:intron | 50.0% | |
| TTGGGGTGAACATGTGGAAG+TGG | + | chr8_3:39418578-39418597 | None:intergenic | 50.0% | |
| GGTCACTTGGGGTGAACATG+TGG | + | chr8_3:39418584-39418603 | None:intergenic | 55.0% | |
| GGTCACTTGGGGTGAACATG+TGG | + | chr8_3:39418584-39418603 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 39416954 | 39419162 | 39416954 | ID=Msa1287820;Name=Msa1287820 |
| chr8_3 | mRNA | 39416954 | 39419162 | 39416954 | ID=Msa1287820-mRNA-1;Parent=Msa1287820;Name=Msa1287820-mRNA-1;_AED=0.47;_eAED=0.61;_QI=0|0|0|1|0|0|5|0|166 |
| chr8_3 | exon | 39419156 | 39419162 | 39419156 | ID=Msa1287820-mRNA-1:exon:11045;Parent=Msa1287820-mRNA-1 |
| chr8_3 | exon | 39418969 | 39419048 | 39418969 | ID=Msa1287820-mRNA-1:exon:11044;Parent=Msa1287820-mRNA-1 |
| chr8_3 | exon | 39418718 | 39418852 | 39418718 | ID=Msa1287820-mRNA-1:exon:11043;Parent=Msa1287820-mRNA-1 |
| chr8_3 | exon | 39417164 | 39417346 | 39417164 | ID=Msa1287820-mRNA-1:exon:11042;Parent=Msa1287820-mRNA-1 |
| chr8_3 | exon | 39416954 | 39417049 | 39416954 | ID=Msa1287820-mRNA-1:exon:11041;Parent=Msa1287820-mRNA-1 |
| chr8_3 | CDS | 39419156 | 39419162 | 39419156 | ID=Msa1287820-mRNA-1:cds;Parent=Msa1287820-mRNA-1 |
| chr8_3 | CDS | 39418969 | 39419048 | 39418969 | ID=Msa1287820-mRNA-1:cds;Parent=Msa1287820-mRNA-1 |
| chr8_3 | CDS | 39418718 | 39418852 | 39418718 | ID=Msa1287820-mRNA-1:cds;Parent=Msa1287820-mRNA-1 |
| chr8_3 | CDS | 39417164 | 39417346 | 39417164 | ID=Msa1287820-mRNA-1:cds;Parent=Msa1287820-mRNA-1 |
| chr8_3 | CDS | 39416954 | 39417049 | 39416954 | ID=Msa1287820-mRNA-1:cds;Parent=Msa1287820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
