Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257300 | PNY11441.1 | 95.833 | 192 | 8 | 0 | 1 | 192 | 1292 | 1483 | 5.81e-118 | 376 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257300 | sp|Q27IK7|KN12C_ARATH | 54.255 | 188 | 80 | 3 | 2 | 188 | 1868 | 2050 | 1.29e-55 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257300 | A0A2K3P831 | 95.833 | 192 | 8 | 0 | 1 | 192 | 1292 | 1483 | 2.77e-118 | 376 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa1257300 | 0.800793 | 1.220183e-48 | -8.615850e-47 |
| Msa0001940 | Msa1257300 | 0.808009 | 3.822961e-50 | -8.615850e-47 |
| Msa0018000 | Msa1257300 | 0.823660 | 1.229056e-53 | -8.615850e-47 |
| Msa0025330 | Msa1257300 | 0.804584 | 2.013568e-49 | -8.615850e-47 |
| Msa0032430 | Msa1257300 | 0.801348 | 9.395065e-49 | -8.615850e-47 |
| Msa0032920 | Msa1257300 | -0.841833 | 3.738165e-58 | -8.615850e-47 |
| Msa0032960 | Msa1257300 | -0.836808 | 7.532826e-57 | -8.615850e-47 |
| Msa0074240 | Msa1257300 | 0.811013 | 8.656302e-51 | -8.615850e-47 |
| Msa0076250 | Msa1257300 | 0.812548 | 4.011735e-51 | -8.615850e-47 |
| Msa0079380 | Msa1257300 | 0.808770 | 2.630457e-50 | -8.615850e-47 |
| Msa0081390 | Msa1257300 | 0.814306 | 1.647843e-51 | -8.615850e-47 |
| Msa0081450 | Msa1257300 | 0.818071 | 2.373207e-52 | -8.615850e-47 |
| Msa0081520 | Msa1257300 | 0.828728 | 7.649382e-55 | -8.615850e-47 |
| Msa0084380 | Msa1257300 | 0.811091 | 8.327677e-51 | -8.615850e-47 |
| Msa0089630 | Msa1257300 | 0.803579 | 3.259288e-49 | -8.615850e-47 |
| Msa0092790 | Msa1257300 | 0.810337 | 1.211696e-50 | -8.615850e-47 |
| Msa0094780 | Msa1257300 | 0.826393 | 2.780739e-54 | -8.615850e-47 |
| Msa0611210 | Msa1257300 | 0.818869 | 1.564887e-52 | -8.615850e-47 |
| Msa0625720 | Msa1257300 | 0.803763 | 2.984124e-49 | -8.615850e-47 |
| Msa0626450 | Msa1257300 | 0.818259 | 2.152250e-52 | -8.615850e-47 |
| Msa0626490 | Msa1257300 | 0.818411 | 1.987982e-52 | -8.615850e-47 |
| Msa0627450 | Msa1257300 | 0.833809 | 4.308763e-56 | -8.615850e-47 |
| Msa0639430 | Msa1257300 | 0.826863 | 2.147956e-54 | -8.615850e-47 |
| Msa0651550 | Msa1257300 | 0.820593 | 6.320443e-53 | -8.615850e-47 |
| Msa0662340 | Msa1257300 | 0.801139 | 1.036754e-48 | -8.615850e-47 |
| Msa0663390 | Msa1257300 | 0.813224 | 2.852255e-51 | -8.615850e-47 |
| Msa0664600 | Msa1257300 | 0.813681 | 2.263485e-51 | -8.615850e-47 |
| Msa0677410 | Msa1257300 | 0.836656 | 8.234126e-57 | -8.615850e-47 |
| Msa0682330 | Msa1257300 | 0.804077 | 2.568272e-49 | -8.615850e-47 |
| Msa0683470 | Msa1257300 | 0.832008 | 1.207509e-55 | -8.615850e-47 |
| Msa0683510 | Msa1257300 | 0.820498 | 6.646248e-53 | -8.615850e-47 |
| Msa0683570 | Msa1257300 | 0.804992 | 1.655420e-49 | -8.615850e-47 |
| Msa0697160 | Msa1257300 | 0.820863 | 5.478062e-53 | -8.615850e-47 |
| Msa0721080 | Msa1257300 | 0.804320 | 2.285630e-49 | -8.615850e-47 |
| Msa0727640 | Msa1257300 | 0.801084 | 1.064070e-48 | -8.615850e-47 |
| Msa0727710 | Msa1257300 | 0.803701 | 3.074557e-49 | -8.615850e-47 |
| Msa0733390 | Msa1257300 | 0.810371 | 1.191739e-50 | -8.615850e-47 |
| Msa0736960 | Msa1257300 | 0.821068 | 4.914722e-53 | -8.615850e-47 |
| Msa0741220 | Msa1257300 | 0.808024 | 3.795195e-50 | -8.615850e-47 |
| Msa0741240 | Msa1257300 | 0.800185 | 1.622850e-48 | -8.615850e-47 |
| Msa0741840 | Msa1257300 | 0.804545 | 2.051556e-49 | -8.615850e-47 |
| Msa0765240 | Msa1257300 | 0.817241 | 3.652119e-52 | -8.615850e-47 |
| Msa0767300 | Msa1257300 | 0.815037 | 1.135053e-51 | -8.615850e-47 |
| Msa0768990 | Msa1257300 | 0.807628 | 4.605687e-50 | -8.615850e-47 |
| Msa0780270 | Msa1257300 | 0.811021 | 8.623506e-51 | -8.615850e-47 |
| Msa0795870 | Msa1257300 | 0.829800 | 4.203887e-55 | -8.615850e-47 |
| Msa0822870 | Msa1257300 | 0.805027 | 1.627323e-49 | -8.615850e-47 |
| Msa0828560 | Msa1257300 | 0.820817 | 5.614339e-53 | -8.615850e-47 |
| Msa0833650 | Msa1257300 | 0.829896 | 3.982877e-55 | -8.615850e-47 |
| Msa0121090 | Msa1257300 | 0.809914 | 1.495147e-50 | -8.615850e-47 |
| Msa0124060 | Msa1257300 | 0.818335 | 2.067881e-52 | -8.615850e-47 |
| Msa0138370 | Msa1257300 | 0.809449 | 1.882053e-50 | -8.615850e-47 |
| Msa0168500 | Msa1257300 | 0.819632 | 1.048949e-52 | -8.615850e-47 |
| Msa0172070 | Msa1257300 | 0.801512 | 8.693927e-49 | -8.615850e-47 |
| Msa0173690 | Msa1257300 | 0.820632 | 6.189979e-53 | -8.615850e-47 |
| Msa0173890 | Msa1257300 | 0.812985 | 3.218768e-51 | -8.615850e-47 |
| Msa0174450 | Msa1257300 | 0.803712 | 3.058344e-49 | -8.615850e-47 |
| Msa0188150 | Msa1257300 | 0.830056 | 3.640094e-55 | -8.615850e-47 |
| Msa0211150 | Msa1257300 | 0.832588 | 8.678786e-56 | -8.615850e-47 |
| Msa0218810 | Msa1257300 | 0.811848 | 5.701032e-51 | -8.615850e-47 |
| Msa0225100 | Msa1257300 | 0.819829 | 9.455589e-53 | -8.615850e-47 |
| Msa0225860 | Msa1257300 | 0.845461 | 4.003306e-59 | -8.615850e-47 |
| Msa1225860 | Msa1257300 | -0.802840 | 4.634328e-49 | -8.615850e-47 |
| Msa1228200 | Msa1257300 | 0.821835 | 3.267820e-53 | -8.615850e-47 |
| Msa1236410 | Msa1257300 | 0.811235 | 7.748997e-51 | -8.615850e-47 |
| Msa1251930 | Msa1257300 | 0.812788 | 3.553853e-51 | -8.615850e-47 |
| Msa1252780 | Msa1257300 | 0.841187 | 5.533093e-58 | -8.615850e-47 |
| Msa1253550 | Msa1257300 | 0.802069 | 6.680970e-49 | -8.615850e-47 |
| Msa1257300 | Msa1263490 | 0.802028 | 6.813898e-49 | -8.615850e-47 |
| Msa1257300 | Msa1276660 | 0.806080 | 9.785450e-50 | -8.615850e-47 |
| Msa1257300 | Msa1293870 | 0.801041 | 1.085859e-48 | -8.615850e-47 |
| Msa1257300 | Msa1297230 | 0.851866 | 6.715175e-61 | -8.615850e-47 |
| Msa1257300 | Msa1298370 | 0.803301 | 3.721019e-49 | -8.615850e-47 |
| Msa1257300 | Msa1307210 | 0.802013 | 6.862977e-49 | -8.615850e-47 |
| Msa1257300 | Msa1314650 | 0.838742 | 2.399757e-57 | -8.615850e-47 |
| Msa1257300 | Msa1320410 | 0.805482 | 1.307100e-49 | -8.615850e-47 |
| Msa1257300 | Msa1328710 | 0.839369 | 1.651150e-57 | -8.615850e-47 |
| Msa1257300 | Msa1332760 | 0.819608 | 1.062141e-52 | -8.615850e-47 |
| Msa1257300 | Msa1343430 | 0.820700 | 5.971886e-53 | -8.615850e-47 |
| Msa1257300 | Msa1348090 | 0.813264 | 2.795396e-51 | -8.615850e-47 |
| Msa1257300 | Msa1353980 | 0.830410 | 2.982762e-55 | -8.615850e-47 |
| Msa1257300 | Msa1356830 | 0.813617 | 2.337700e-51 | -8.615850e-47 |
| Msa1257300 | Msa1360980 | 0.813393 | 2.618656e-51 | -8.615850e-47 |
| Msa1257300 | Msa1373100 | 0.800981 | 1.116718e-48 | -8.615850e-47 |
| Msa1257300 | Msa1375560 | 0.807225 | 5.608897e-50 | -8.615850e-47 |
| Msa1257300 | Msa1383530 | 0.820768 | 5.761334e-53 | -8.615850e-47 |
| Msa1257300 | Msa1390440 | 0.803023 | 4.247689e-49 | -8.615850e-47 |
| Msa1257300 | Msa1397400 | 0.805032 | 1.623188e-49 | -8.615850e-47 |
| Msa1257300 | Msa1422950 | 0.800779 | 1.227988e-48 | -8.615850e-47 |
| Msa1257300 | Msa1425880 | 0.811452 | 6.951698e-51 | -8.615850e-47 |
| Msa1257300 | Msa1427200 | 0.801182 | 1.015857e-48 | -8.615850e-47 |
| Msa1257300 | Msa1437940 | 0.801996 | 6.916559e-49 | -8.615850e-47 |
| Msa1257300 | Msa1440310 | 0.806157 | 9.429517e-50 | -8.615850e-47 |
| Msa1257300 | Msa1440880 | 0.802954 | 4.390599e-49 | -8.615850e-47 |
| Msa1257300 | Msa1440960 | 0.810134 | 1.340203e-50 | -8.615850e-47 |
| Msa1257300 | Msa1449480 | 0.809383 | 1.944534e-50 | -8.615850e-47 |
| Msa1257300 | Msa1451160 | 0.825770 | 3.910299e-54 | -8.615850e-47 |
| Msa1257300 | Msa1464810 | 0.821184 | 4.621427e-53 | -8.615850e-47 |
| Msa0372810 | Msa1257300 | 0.817493 | 3.204458e-52 | -8.615850e-47 |
| Msa0376350 | Msa1257300 | 0.812601 | 3.905999e-51 | -8.615850e-47 |
| Msa0378720 | Msa1257300 | 0.832800 | 7.686132e-56 | -8.615850e-47 |
| Msa0378970 | Msa1257300 | 0.804692 | 1.911698e-49 | -8.615850e-47 |
| Msa0386090 | Msa1257300 | 0.805195 | 1.501133e-49 | -8.615850e-47 |
| Msa0405130 | Msa1257300 | 0.803752 | 3.000327e-49 | -8.615850e-47 |
| Msa0410650 | Msa1257300 | 0.806659 | 7.388693e-50 | -8.615850e-47 |
| Msa0417880 | Msa1257300 | 0.806322 | 8.701171e-50 | -8.615850e-47 |
| Msa0424790 | Msa1257300 | 0.818371 | 2.029718e-52 | -8.615850e-47 |
| Msa0428580 | Msa1257300 | 0.802458 | 5.557064e-49 | -8.615850e-47 |
| Msa0440440 | Msa1257300 | 0.803869 | 2.837491e-49 | -8.615850e-47 |
| Msa0464680 | Msa1257300 | 0.803098 | 4.099607e-49 | -8.615850e-47 |
| Msa0467490 | Msa1257300 | 0.842141 | 3.098735e-58 | -8.615850e-47 |
| Msa0474730 | Msa1257300 | 0.813731 | 2.206628e-51 | -8.615850e-47 |
| Msa0479170 | Msa1257300 | 0.828136 | 1.063423e-54 | -8.615850e-47 |
| Msa1004840 | Msa1257300 | 0.815231 | 1.027852e-51 | -8.615850e-47 |
| Msa1019430 | Msa1257300 | 0.813133 | 2.986605e-51 | -8.615850e-47 |
| Msa1019470 | Msa1257300 | 0.817513 | 3.171628e-52 | -8.615850e-47 |
| Msa1020510 | Msa1257300 | 0.812818 | 3.500675e-51 | -8.615850e-47 |
| Msa1031930 | Msa1257300 | 0.805120 | 1.555911e-49 | -8.615850e-47 |
| Msa1035960 | Msa1257300 | 0.817662 | 2.936470e-52 | -8.615850e-47 |
| Msa1043370 | Msa1257300 | 0.825884 | 3.673729e-54 | -8.615850e-47 |
| Msa1078170 | Msa1257300 | 0.820566 | 6.409203e-53 | -8.615850e-47 |
| Msa1085200 | Msa1257300 | 0.809601 | 1.745438e-50 | -8.615850e-47 |
| Msa1101090 | Msa1257300 | 0.800104 | 1.685289e-48 | -8.615850e-47 |
| Msa0244640 | Msa1257300 | 0.803411 | 3.530388e-49 | -8.615850e-47 |
| Msa0254790 | Msa1257300 | 0.811992 | 5.305392e-51 | -8.615850e-47 |
| Msa0261340 | Msa1257300 | 0.804061 | 2.588319e-49 | -8.615850e-47 |
| Msa0266180 | Msa1257300 | 0.822882 | 1.867331e-53 | -8.615850e-47 |
| Msa0266350 | Msa1257300 | 0.812759 | 3.607048e-51 | -8.615850e-47 |
| Msa0274980 | Msa1257300 | 0.819966 | 8.796821e-53 | -8.615850e-47 |
| Msa0287740 | Msa1257300 | 0.815415 | 9.356032e-52 | -8.615850e-47 |
| Msa0292400 | Msa1257300 | 0.801468 | 8.877341e-49 | -8.615850e-47 |
| Msa0297790 | Msa1257300 | 0.814945 | 1.189821e-51 | -8.615850e-47 |
| Msa0300270 | Msa1257300 | 0.821403 | 4.114362e-53 | -8.615850e-47 |
| Msa0300320 | Msa1257300 | 0.816294 | 5.956901e-52 | -8.615850e-47 |
| Msa0305700 | Msa1257300 | 0.800075 | 1.708501e-48 | -8.615850e-47 |
| Msa0315690 | Msa1257300 | 0.820144 | 8.012019e-53 | -8.615850e-47 |
| Msa0317730 | Msa1257300 | 0.806368 | 8.510680e-50 | -8.615850e-47 |
| Msa0335800 | Msa1257300 | 0.800293 | 1.542576e-48 | -8.615850e-47 |
| Msa0337700 | Msa1257300 | 0.820562 | 6.424376e-53 | -8.615850e-47 |
| Msa0339500 | Msa1257300 | 0.804634 | 1.966238e-49 | -8.615850e-47 |
| Msa0341540 | Msa1257300 | 0.804427 | 2.172012e-49 | -8.615850e-47 |
| Msa0341690 | Msa1257300 | 0.809112 | 2.222901e-50 | -8.615850e-47 |
| Msa0358890 | Msa1257300 | 0.824342 | 8.502825e-54 | -8.615850e-47 |
| Msa1122520 | Msa1257300 | 0.801416 | 9.097950e-49 | -8.615850e-47 |
| Msa1123380 | Msa1257300 | 0.827011 | 1.980244e-54 | -8.615850e-47 |
| Msa1126450 | Msa1257300 | 0.808662 | 2.773672e-50 | -8.615850e-47 |
| Msa1132840 | Msa1257300 | 0.832577 | 8.732209e-56 | -8.615850e-47 |
| Msa1139890 | Msa1257300 | 0.814640 | 1.390038e-51 | -8.615850e-47 |
| Msa1140210 | Msa1257300 | 0.808520 | 2.974514e-50 | -8.615850e-47 |
| Msa1145810 | Msa1257300 | 0.833763 | 4.423460e-56 | -8.615850e-47 |
| Msa1155170 | Msa1257300 | -0.817967 | 2.505264e-52 | -8.615850e-47 |
| Msa1186020 | Msa1257300 | 0.854439 | 1.230226e-61 | -8.615850e-47 |
| Msa1193170 | Msa1257300 | 0.812102 | 5.019592e-51 | -8.615850e-47 |
| Msa1193290 | Msa1257300 | 0.802829 | 4.660261e-49 | -8.615850e-47 |
| Msa1199570 | Msa1257300 | 0.832570 | 8.765698e-56 | -8.615850e-47 |
| Msa1200890 | Msa1257300 | 0.804354 | 2.248771e-49 | -8.615850e-47 |
| Msa1205280 | Msa1257300 | 0.820298 | 7.383556e-53 | -8.615850e-47 |
| Msa1208950 | Msa1257300 | 0.811359 | 7.283571e-51 | -8.615850e-47 |
| Msa1209460 | Msa1257300 | 0.815925 | 7.199394e-52 | -8.615850e-47 |
| Msa1219000 | Msa1257300 | 0.820416 | 6.938120e-53 | -8.615850e-47 |
| Msa0498060 | Msa1257300 | 0.810259 | 1.259701e-50 | -8.615850e-47 |
| Msa0507680 | Msa1257300 | 0.808850 | 2.529440e-50 | -8.615850e-47 |
| Msa0516170 | Msa1257300 | 0.807941 | 3.951797e-50 | -8.615850e-47 |
| Msa0529890 | Msa1257300 | 0.804044 | 2.609832e-49 | -8.615850e-47 |
| Msa0546680 | Msa1257300 | 0.806715 | 7.189763e-50 | -8.615850e-47 |
| Msa0547170 | Msa1257300 | 0.807248 | 5.544869e-50 | -8.615850e-47 |
| Msa0557070 | Msa1257300 | 0.810494 | 1.121227e-50 | -8.615850e-47 |
| Msa0569200 | Msa1257300 | 0.810799 | 9.629268e-51 | -8.615850e-47 |
| Msa0580370 | Msa1257300 | 0.828060 | 1.109072e-54 | -8.615850e-47 |
| Msa0581470 | Msa1257300 | 0.803453 | 3.461086e-49 | -8.615850e-47 |
| Msa0585560 | Msa1257300 | 0.809782 | 1.596252e-50 | -8.615850e-47 |
| Msa0590830 | Msa1257300 | 0.816760 | 4.684643e-52 | -8.615850e-47 |
| Msa0602460 | Msa1257300 | 0.831112 | 2.007422e-55 | -8.615850e-47 |
| Msa0861510 | Msa1257300 | 0.832875 | 7.365361e-56 | -8.615850e-47 |
| Msa0861530 | Msa1257300 | 0.813864 | 2.062503e-51 | -8.615850e-47 |
| Msa0861600 | Msa1257300 | 0.835764 | 1.387882e-56 | -8.615850e-47 |
| Msa0861870 | Msa1257300 | 0.815638 | 8.343324e-52 | -8.615850e-47 |
| Msa0866520 | Msa1257300 | 0.850316 | 1.836846e-60 | -8.615850e-47 |
| Msa0875290 | Msa1257300 | 0.803624 | 3.190198e-49 | -8.615850e-47 |
| Msa0898750 | Msa1257300 | 0.809289 | 2.036853e-50 | -8.615850e-47 |
| Msa0899980 | Msa1257300 | 0.802486 | 5.484726e-49 | -8.615850e-47 |
| Msa0902510 | Msa1257300 | 0.819044 | 1.428233e-52 | -8.615850e-47 |
| Msa0928130 | Msa1257300 | 0.807475 | 4.963838e-50 | -8.615850e-47 |
| Msa0941190 | Msa1257300 | 0.826737 | 2.302109e-54 | -8.615850e-47 |
| Msa0945110 | Msa1257300 | 0.805323 | 1.411304e-49 | -8.615850e-47 |
| Msa0961610 | Msa1257300 | 0.809536 | 1.802919e-50 | -8.615850e-47 |
| Msa0963270 | Msa1257300 | 0.802164 | 6.389210e-49 | -8.615850e-47 |
| Msa0964310 | Msa1257300 | 0.822496 | 2.296916e-53 | -8.615850e-47 |
| Msa0967380 | Msa1257300 | 0.801079 | 1.066300e-48 | -8.615850e-47 |
| Msa0967870 | Msa1257300 | 0.805320 | 1.413040e-49 | -8.615850e-47 |
| Msa0972100 | Msa1257300 | 0.811044 | 8.522628e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257300 | MtrunA17_Chr4g0069141 | 96.354 | 192 | 7 | 0 | 1 | 192 | 2038 | 2229 | 2.35e-121 | 377 |
| Msa1257300 | MtrunA17_Chr4g0045381 | 38.298 | 188 | 114 | 2 | 2 | 187 | 2451 | 2638 | 2.08e-34 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257300 | AT3G17360.3 | 54.255 | 188 | 80 | 3 | 2 | 188 | 1877 | 2059 | 1.26e-56 | 192 |
| Msa1257300 | AT3G17360.1 | 54.255 | 188 | 80 | 3 | 2 | 188 | 1868 | 2050 | 1.31e-56 | 192 |
| Msa1257300 | AT3G17360.2 | 54.255 | 188 | 80 | 3 | 2 | 188 | 1876 | 2058 | 1.33e-56 | 192 |
| Msa1257300 | AT3G19050.1 | 30.151 | 199 | 127 | 3 | 1 | 192 | 2459 | 2652 | 6.37e-19 | 84.3 |
Find 57 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATAAGGGATCTCAAAATT+TGG | 0.229288 | 8_2:+57905963 | Msa1257300:intron |
| CAGATCCTTCTGTTCTTGAT+AGG | 0.255513 | 8_2:+57906244 | Msa1257300:three_prime_UTR |
| GGACCTTCTTGGTGTCAAAT+TGG | 0.275950 | 8_2:+57904674 | Msa1257300:CDS |
| CTAATTTCACGATTTGGTTT+TGG | 0.278795 | 8_2:-57904814 | None:intergenic |
| TGCAGCGAGCAGTTTATATA+TGG | 0.286405 | 8_2:+57906387 | Msa1257300:three_prime_UTR |
| GATGAGGAAGATTGCAGAAT+TGG | 0.336343 | 8_2:+57905776 | Msa1257300:CDS |
| CCTCCACTAATTTCACGATT+TGG | 0.343542 | 8_2:-57904820 | None:intergenic |
| ACTGGTAAACCTACGGGCTT+TGG | 0.362250 | 8_2:+57906207 | Msa1257300:three_prime_UTR |
| ACTCAGTACCGCAAATCTTC+TGG | 0.368029 | 8_2:+57906054 | Msa1257300:CDS |
| GATAAGGGATCTCAAAATTT+GGG | 0.384242 | 8_2:+57905964 | Msa1257300:CDS |
| ACCTACGGGCTTTGGTTTCG+TGG | 0.385374 | 8_2:+57906215 | Msa1257300:three_prime_UTR |
| ATTGATCATTGTAACACCTT+TGG | 0.389906 | 8_2:+57906177 | Msa1257300:three_prime_UTR |
| GCATGGCTCATGATGTGATT+CGG | 0.406601 | 8_2:+57904652 | Msa1257300:CDS |
| TTTGCGTTTCATTCATTGGT+TGG | 0.406796 | 8_2:+57906307 | Msa1257300:three_prime_UTR |
| CATGGCTCATGATGTGATTC+GGG | 0.408556 | 8_2:+57904653 | Msa1257300:CDS |
| TTGCGTTTCATTCATTGGTT+GGG | 0.408829 | 8_2:+57906308 | Msa1257300:three_prime_UTR |
| GATGTGATTCGGGACCTTCT+TGG | 0.409872 | 8_2:+57904663 | Msa1257300:CDS |
| GATCATTAATATGCTGTCTA+AGG | 0.418674 | 8_2:-57904973 | None:intergenic |
| CCTTAGTCTTTGATGATTGT+GGG | 0.421005 | 8_2:-57905845 | None:intergenic |
| AGATCCTTCTGTTCTTGATA+GGG | 0.422703 | 8_2:+57906245 | Msa1257300:three_prime_UTR |
| TGCAATCTTCCTCATCAGAT+TGG | 0.427720 | 8_2:-57905769 | None:intergenic |
| AAAGCAACTGATCTCGCTCT+TGG | 0.438606 | 8_2:-57905610 | None:intergenic |
| ACCTTAGTCTTTGATGATTG+TGG | 0.442733 | 8_2:-57905846 | None:intergenic |
| GACATGGTTAAAACACTAGT+TGG | 0.457037 | 8_2:+57905801 | Msa1257300:CDS |
| AAACCAAATCGTGAAATTAG+TGG | 0.459717 | 8_2:+57904817 | Msa1257300:CDS |
| TTCAGACTGGGACAACCTCT+TGG | 0.480567 | 8_2:-57906001 | None:intergenic |
| TCTGAAACTTACCGCATAGT+TGG | 0.491593 | 8_2:-57904703 | None:intergenic |
| AACTATCACCAGAAGATTTG+CGG | 0.503338 | 8_2:-57906062 | None:intergenic |
| CCCACAATCATCAAAGACTA+AGG | 0.510274 | 8_2:+57905845 | Msa1257300:CDS |
| GAGCAAGAAGTCTTTCAGAC+TGG | 0.514706 | 8_2:-57906014 | None:intergenic |
| GAGAGAAGAGTTCTTTGCAA+AGG | 0.525760 | 8_2:+57904856 | Msa1257300:CDS |
| TTTACCAGTGTTCTTGCCAA+AGG | 0.542608 | 8_2:-57906193 | None:intergenic |
| ACATGGTTAAAACACTAGTT+GGG | 0.545344 | 8_2:+57905802 | Msa1257300:CDS |
| GCAGCGAGCAGTTTATATAT+GGG | 0.551070 | 8_2:+57906388 | Msa1257300:three_prime_UTR |
| ATCGAACCTGAAAACTAAAG+AGG | 0.557300 | 8_2:+57905550 | Msa1257300:CDS |
| TTGCATGCTACAAACAAGGT+TGG | 0.557881 | 8_2:+57904617 | None:intergenic |
| TCAATCAATTATACAGATGG+AGG | 0.559608 | 8_2:-57906159 | None:intergenic |
| CAAGAACACTGGTAAACCTA+CGG | 0.564067 | 8_2:+57906200 | Msa1257300:three_prime_UTR |
| TCTTCTGGTGATAGTTTGCA+CGG | 0.571454 | 8_2:+57906069 | Msa1257300:CDS |
| AGCAAGAAGTCTTTCAGACT+GGG | 0.573964 | 8_2:-57906013 | None:intergenic |
| TGATCAATCAATTATACAGA+TGG | 0.574847 | 8_2:-57906162 | None:intergenic |
| AACACCTTTGGCAAGAACAC+TGG | 0.579521 | 8_2:+57906189 | Msa1257300:three_prime_UTR |
| GTTGGCTGCTACTGAAAGCA+TGG | 0.586493 | 8_2:+57904635 | Msa1257300:CDS |
| AAGAACACTGGTAAACCTAC+GGG | 0.593781 | 8_2:+57906201 | Msa1257300:three_prime_UTR |
| GATTGCAGAATTGGACGACA+TGG | 0.598537 | 8_2:+57905785 | Msa1257300:CDS |
| AGAACCCTATCAAGAACAGA+AGG | 0.599565 | 8_2:-57906249 | None:intergenic |
| TGCACAAAATGAAATGCTGA+AGG | 0.606786 | 8_2:+57905634 | Msa1257300:CDS |
| TGTCCAATTTGACACCAAGA+AGG | 0.617099 | 8_2:-57904677 | None:intergenic |
| AACATATGTAAAATCTAGTG+TGG | 0.629778 | 8_2:+57906280 | Msa1257300:three_prime_UTR |
| GTAATGTCAGATTTACCAAG+AGG | 0.641754 | 8_2:+57905986 | Msa1257300:CDS |
| AGGTTTGCATGCTACAAACA+AGG | 0.642511 | 8_2:+57904613 | None:intergenic |
| ATCTCATTGAAGAAAGAGAG+AGG | 0.643485 | 8_2:+57904993 | Msa1257300:CDS |
| TGGACAAGACCAATCTGATG+AGG | 0.643645 | 8_2:+57905760 | Msa1257300:CDS |
| CCAAATCGTGAAATTAGTGG+AGG | 0.644373 | 8_2:+57904820 | Msa1257300:CDS |
| CAATCAATTATACAGATGGA+GGG | 0.648226 | 8_2:-57906158 | None:intergenic |
| ATTGGACATTACCAACTATG+CGG | 0.720945 | 8_2:+57904692 | Msa1257300:CDS |
| ACCACGAAACCAAAGCCCGT+AGG | 0.735590 | 8_2:-57906216 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTAATAAATTTTCTTAATT+TGG | + | chr8_2:57905072-57905091 | Msa1257300:intron | 10.0% |
| !!! | TATTTTACATTAAAAAATGT+TGG | - | chr8_2:57906130-57906149 | None:intergenic | 10.0% |
| !!! | TCTAATAAATTTTCTTAATT+TGG | + | chr8_2:57905072-57905091 | Msa1257300:intron | 10.0% |
| !!! | TATTTTACATTAAAAAATGT+TGG | - | chr8_2:57906130-57906149 | None:intergenic | 10.0% |
| !!! | TTTTATATTGTGAAATTTCA+TGG | + | chr8_2:57904731-57904750 | Msa1257300:intron | 15.0% |
| !!! | GAGTTATTTTCTTTTTTAAA+TGG | + | chr8_2:57905242-57905261 | Msa1257300:intron | 15.0% |
| !!! | TTTTATATTGTGAAATTTCA+TGG | + | chr8_2:57904731-57904750 | Msa1257300:intron | 15.0% |
| !!! | GAGTTATTTTCTTTTTTAAA+TGG | + | chr8_2:57905242-57905261 | Msa1257300:intron | 15.0% |
| !!! | TTTTCCTAATGATAAAGAAA+TGG | - | chr8_2:57904941-57904960 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTACCATAAAGAA+TGG | + | chr8_2:57905213-57905232 | Msa1257300:intron | 20.0% |
| !! | AATATGTTGAAATGTATAGT+TGG | - | chr8_2:57905348-57905367 | None:intergenic | 20.0% |
| !! | ACTATACATTTCAACATATT+AGG | + | chr8_2:57905348-57905367 | Msa1257300:intron | 20.0% |
| !! | CTATACATTTCAACATATTA+GGG | + | chr8_2:57905349-57905368 | Msa1257300:intron | 20.0% |
| !!! | AAAATTTGGAATGTTCAATT+TGG | - | chr8_2:57905399-57905418 | None:intergenic | 20.0% |
| !!! | AATTGAACATTCCAAATTTT+CGG | + | chr8_2:57905399-57905418 | Msa1257300:intron | 20.0% |
| !! | ACATTAAATAACCGAAAATT+TGG | - | chr8_2:57905413-57905432 | None:intergenic | 20.0% |
| !!! | TTACATTTTCTATCTTTAGT+AGG | + | chr8_2:57905873-57905892 | Msa1257300:intron | 20.0% |
| !!! | TACATTTTCTATCTTTAGTA+GGG | + | chr8_2:57905874-57905893 | Msa1257300:intron | 20.0% |
| !!! | ACCACTTTTTTTTTTTTTTG+CGG | + | chr8_2:57906099-57906118 | Msa1257300:three_prime_UTR | 20.0% |
| !!! | TTTTCCTAATGATAAAGAAA+TGG | - | chr8_2:57904941-57904960 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTACCATAAAGAA+TGG | + | chr8_2:57905213-57905232 | Msa1257300:intron | 20.0% |
| !! | AATATGTTGAAATGTATAGT+TGG | - | chr8_2:57905348-57905367 | None:intergenic | 20.0% |
| !! | ACTATACATTTCAACATATT+AGG | + | chr8_2:57905348-57905367 | Msa1257300:intron | 20.0% |
| !! | CTATACATTTCAACATATTA+GGG | + | chr8_2:57905349-57905368 | Msa1257300:intron | 20.0% |
| !!! | AAAATTTGGAATGTTCAATT+TGG | - | chr8_2:57905399-57905418 | None:intergenic | 20.0% |
| !!! | AATTGAACATTCCAAATTTT+CGG | + | chr8_2:57905399-57905418 | Msa1257300:intron | 20.0% |
| !! | ACATTAAATAACCGAAAATT+TGG | - | chr8_2:57905413-57905432 | None:intergenic | 20.0% |
| !!! | TTACATTTTCTATCTTTAGT+AGG | + | chr8_2:57905873-57905892 | Msa1257300:intron | 20.0% |
| !!! | TACATTTTCTATCTTTAGTA+GGG | + | chr8_2:57905874-57905893 | Msa1257300:intron | 20.0% |
| !!! | ACCACTTTTTTTTTTTTTTG+CGG | + | chr8_2:57906099-57906118 | Msa1257300:three_prime_UTR | 20.0% |
| !! | ATTGCCATTTCTTTATCATT+AGG | + | chr8_2:57904934-57904953 | Msa1257300:intron | 25.0% |
| !! | TTAGAAAGCATAATCAAGAA+TGG | - | chr8_2:57905057-57905076 | None:intergenic | 25.0% |
| !! | GATTCAAGTTCATATTAAAC+TGG | + | chr8_2:57905163-57905182 | Msa1257300:intron | 25.0% |
| ! | TGAAATGTATAGTTGGAATT+CGG | - | chr8_2:57905341-57905360 | None:intergenic | 25.0% |
| ! | TTCTAAATCTTGAAATAGCA+TGG | - | chr8_2:57905456-57905475 | None:intergenic | 25.0% |
| !!! | CATTTTATTTTGTGGATTAC+AGG | + | chr8_2:57905942-57905961 | Msa1257300:intron | 25.0% |
| ! | TGATCAATCAATTATACAGA+TGG | - | chr8_2:57906165-57906184 | None:intergenic | 25.0% |
| ! | AACATATGTAAAATCTAGTG+TGG | + | chr8_2:57906280-57906299 | Msa1257300:three_prime_UTR | 25.0% |
| !! | TGATACATTTTGTCTATTCA+TGG | + | chr8_2:57906355-57906374 | Msa1257300:three_prime_UTR | 25.0% |
| !! | ATTGCCATTTCTTTATCATT+AGG | + | chr8_2:57904934-57904953 | Msa1257300:intron | 25.0% |
| !! | TTAGAAAGCATAATCAAGAA+TGG | - | chr8_2:57905057-57905076 | None:intergenic | 25.0% |
| !! | GATTCAAGTTCATATTAAAC+TGG | + | chr8_2:57905163-57905182 | Msa1257300:intron | 25.0% |
| ! | TGAAATGTATAGTTGGAATT+CGG | - | chr8_2:57905341-57905360 | None:intergenic | 25.0% |
| ! | TTCTAAATCTTGAAATAGCA+TGG | - | chr8_2:57905456-57905475 | None:intergenic | 25.0% |
| !!! | CATTTTATTTTGTGGATTAC+AGG | + | chr8_2:57905942-57905961 | Msa1257300:intron | 25.0% |
| ! | TGATCAATCAATTATACAGA+TGG | - | chr8_2:57906165-57906184 | None:intergenic | 25.0% |
| ! | AACATATGTAAAATCTAGTG+TGG | + | chr8_2:57906280-57906299 | Msa1257300:three_prime_UTR | 25.0% |
| !! | TGATACATTTTGTCTATTCA+TGG | + | chr8_2:57906355-57906374 | Msa1257300:three_prime_UTR | 25.0% |
| !!! | CTAATTTCACGATTTGGTTT+TGG | - | chr8_2:57904817-57904836 | None:intergenic | 30.0% |
| AAACCAAATCGTGAAATTAG+TGG | + | chr8_2:57904817-57904836 | Msa1257300:CDS | 30.0% | |
| GATCATTAATATGCTGTCTA+AGG | - | chr8_2:57904976-57904995 | None:intergenic | 30.0% | |
| GCATAATCAAGAATGGATAA+CGG | - | chr8_2:57905050-57905069 | None:intergenic | 30.0% | |
| TGAAATATCATATGCTCAAG+AGG | - | chr8_2:57905138-57905157 | None:intergenic | 30.0% | |
| ACATGGTTAAAACACTAGTT+GGG | + | chr8_2:57905802-57905821 | Msa1257300:CDS | 30.0% | |
| !!! | GTTACGAGCATTTTATTTTG+TGG | + | chr8_2:57905934-57905953 | Msa1257300:intron | 30.0% |
| !! | ATTTTGTGGATTACAGGATA+AGG | + | chr8_2:57905948-57905967 | Msa1257300:intron | 30.0% |
| !! | TTTTGTGGATTACAGGATAA+GGG | + | chr8_2:57905949-57905968 | Msa1257300:intron | 30.0% |
| GATAAGGGATCTCAAAATTT+GGG | + | chr8_2:57905964-57905983 | Msa1257300:CDS | 30.0% | |
| GCCGCAAAAAAAAAAAAAAG+TGG | - | chr8_2:57906103-57906122 | None:intergenic | 30.0% | |
| CAATCAATTATACAGATGGA+GGG | - | chr8_2:57906161-57906180 | None:intergenic | 30.0% | |
| TCAATCAATTATACAGATGG+AGG | - | chr8_2:57906162-57906181 | None:intergenic | 30.0% | |
| ATTGATCATTGTAACACCTT+TGG | + | chr8_2:57906177-57906196 | Msa1257300:three_prime_UTR | 30.0% | |
| !! | TGTTTTTGCGTTTCATTCAT+TGG | + | chr8_2:57906303-57906322 | Msa1257300:three_prime_UTR | 30.0% |
| !! | GGTTGTAATTTTGATCTCAT+TGG | + | chr8_2:57906329-57906348 | Msa1257300:three_prime_UTR | 30.0% |
| !!! | CTAATTTCACGATTTGGTTT+TGG | - | chr8_2:57904817-57904836 | None:intergenic | 30.0% |
| AAACCAAATCGTGAAATTAG+TGG | + | chr8_2:57904817-57904836 | Msa1257300:CDS | 30.0% | |
| GATCATTAATATGCTGTCTA+AGG | - | chr8_2:57904976-57904995 | None:intergenic | 30.0% | |
| GCATAATCAAGAATGGATAA+CGG | - | chr8_2:57905050-57905069 | None:intergenic | 30.0% | |
| TGAAATATCATATGCTCAAG+AGG | - | chr8_2:57905138-57905157 | None:intergenic | 30.0% | |
| ACATGGTTAAAACACTAGTT+GGG | + | chr8_2:57905802-57905821 | Msa1257300:CDS | 30.0% | |
| !!! | GTTACGAGCATTTTATTTTG+TGG | + | chr8_2:57905934-57905953 | Msa1257300:intron | 30.0% |
| !! | ATTTTGTGGATTACAGGATA+AGG | + | chr8_2:57905948-57905967 | Msa1257300:intron | 30.0% |
| !! | TTTTGTGGATTACAGGATAA+GGG | + | chr8_2:57905949-57905968 | Msa1257300:intron | 30.0% |
| GATAAGGGATCTCAAAATTT+GGG | + | chr8_2:57905964-57905983 | Msa1257300:CDS | 30.0% | |
| GCCGCAAAAAAAAAAAAAAG+TGG | - | chr8_2:57906103-57906122 | None:intergenic | 30.0% | |
| CAATCAATTATACAGATGGA+GGG | - | chr8_2:57906161-57906180 | None:intergenic | 30.0% | |
| TCAATCAATTATACAGATGG+AGG | - | chr8_2:57906162-57906181 | None:intergenic | 30.0% | |
| ATTGATCATTGTAACACCTT+TGG | + | chr8_2:57906177-57906196 | Msa1257300:three_prime_UTR | 30.0% | |
| !! | TGTTTTTGCGTTTCATTCAT+TGG | + | chr8_2:57906303-57906322 | Msa1257300:three_prime_UTR | 30.0% |
| !! | GGTTGTAATTTTGATCTCAT+TGG | + | chr8_2:57906329-57906348 | Msa1257300:three_prime_UTR | 30.0% |
| ATTGGACATTACCAACTATG+CGG | + | chr8_2:57904692-57904711 | Msa1257300:CDS | 35.0% | |
| !! | GGTTTTGGTCTATCAAATTC+TGG | - | chr8_2:57904802-57904821 | None:intergenic | 35.0% |
| ATCTCATTGAAGAAAGAGAG+AGG | + | chr8_2:57904993-57905012 | Msa1257300:CDS | 35.0% | |
| ACTCATAACGCCATTCTTTA+TGG | - | chr8_2:57905226-57905245 | None:intergenic | 35.0% | |
| GCTGAGTCACAAATTAAATG+TGG | - | chr8_2:57905525-57905544 | None:intergenic | 35.0% | |
| ATCGAACCTGAAAACTAAAG+AGG | + | chr8_2:57905550-57905569 | Msa1257300:CDS | 35.0% | |
| !!! | TATCTGCCTCTTTAGTTTTC+AGG | - | chr8_2:57905559-57905578 | None:intergenic | 35.0% |
| TGCACAAAATGAAATGCTGA+AGG | + | chr8_2:57905634-57905653 | Msa1257300:CDS | 35.0% | |
| !! | AAATGCTGAAGGTACTACTA+GGG | + | chr8_2:57905645-57905664 | Msa1257300:intron | 35.0% |
| TTCCTGTCAATTGTTGTAGA+TGG | + | chr8_2:57905740-57905759 | Msa1257300:intron | 35.0% | |
| GACATGGTTAAAACACTAGT+TGG | + | chr8_2:57905801-57905820 | Msa1257300:CDS | 35.0% | |
| ! | CCTTAGTCTTTGATGATTGT+GGG | - | chr8_2:57905848-57905867 | None:intergenic | 35.0% |
| ! | ACCTTAGTCTTTGATGATTG+TGG | - | chr8_2:57905849-57905868 | None:intergenic | 35.0% |
| TAAAATGCTCGTAACTGAGA+AGG | - | chr8_2:57905929-57905948 | None:intergenic | 35.0% | |
| GGATAAGGGATCTCAAAATT+TGG | + | chr8_2:57905963-57905982 | Msa1257300:intron | 35.0% | |
| GTAATGTCAGATTTACCAAG+AGG | + | chr8_2:57905986-57906005 | Msa1257300:CDS | 35.0% | |
| AACTATCACCAGAAGATTTG+CGG | - | chr8_2:57906065-57906084 | None:intergenic | 35.0% | |
| AGATCCTTCTGTTCTTGATA+GGG | + | chr8_2:57906245-57906264 | Msa1257300:three_prime_UTR | 35.0% | |
| TTTGCGTTTCATTCATTGGT+TGG | + | chr8_2:57906307-57906326 | Msa1257300:three_prime_UTR | 35.0% | |
| ! | TTGCGTTTCATTCATTGGTT+GGG | + | chr8_2:57906308-57906327 | Msa1257300:three_prime_UTR | 35.0% |
| ATTGGACATTACCAACTATG+CGG | + | chr8_2:57904692-57904711 | Msa1257300:CDS | 35.0% | |
| !! | GGTTTTGGTCTATCAAATTC+TGG | - | chr8_2:57904802-57904821 | None:intergenic | 35.0% |
| ATCTCATTGAAGAAAGAGAG+AGG | + | chr8_2:57904993-57905012 | Msa1257300:CDS | 35.0% | |
| ACTCATAACGCCATTCTTTA+TGG | - | chr8_2:57905226-57905245 | None:intergenic | 35.0% | |
| GCTGAGTCACAAATTAAATG+TGG | - | chr8_2:57905525-57905544 | None:intergenic | 35.0% | |
| ATCGAACCTGAAAACTAAAG+AGG | + | chr8_2:57905550-57905569 | Msa1257300:CDS | 35.0% | |
| !!! | TATCTGCCTCTTTAGTTTTC+AGG | - | chr8_2:57905559-57905578 | None:intergenic | 35.0% |
| TGCACAAAATGAAATGCTGA+AGG | + | chr8_2:57905634-57905653 | Msa1257300:CDS | 35.0% | |
| !! | AAATGCTGAAGGTACTACTA+GGG | + | chr8_2:57905645-57905664 | Msa1257300:intron | 35.0% |
| TTCCTGTCAATTGTTGTAGA+TGG | + | chr8_2:57905740-57905759 | Msa1257300:intron | 35.0% | |
| GACATGGTTAAAACACTAGT+TGG | + | chr8_2:57905801-57905820 | Msa1257300:CDS | 35.0% | |
| ! | CCTTAGTCTTTGATGATTGT+GGG | - | chr8_2:57905848-57905867 | None:intergenic | 35.0% |
| ! | ACCTTAGTCTTTGATGATTG+TGG | - | chr8_2:57905849-57905868 | None:intergenic | 35.0% |
| TAAAATGCTCGTAACTGAGA+AGG | - | chr8_2:57905929-57905948 | None:intergenic | 35.0% | |
| GGATAAGGGATCTCAAAATT+TGG | + | chr8_2:57905963-57905982 | Msa1257300:intron | 35.0% | |
| GTAATGTCAGATTTACCAAG+AGG | + | chr8_2:57905986-57906005 | Msa1257300:CDS | 35.0% | |
| AACTATCACCAGAAGATTTG+CGG | - | chr8_2:57906065-57906084 | None:intergenic | 35.0% | |
| AGATCCTTCTGTTCTTGATA+GGG | + | chr8_2:57906245-57906264 | Msa1257300:three_prime_UTR | 35.0% | |
| TTTGCGTTTCATTCATTGGT+TGG | + | chr8_2:57906307-57906326 | Msa1257300:three_prime_UTR | 35.0% | |
| ! | TTGCGTTTCATTCATTGGTT+GGG | + | chr8_2:57906308-57906327 | Msa1257300:three_prime_UTR | 35.0% |
| TGTCCAATTTGACACCAAGA+AGG | - | chr8_2:57904680-57904699 | None:intergenic | 40.0% | |
| ! | TCTGAAACTTACCGCATAGT+TGG | - | chr8_2:57904706-57904725 | None:intergenic | 40.0% |
| CCAGAAGCAACAAAAATGCA+AGG | - | chr8_2:57904773-57904792 | None:intergenic | 40.0% | |
| !! | CCTTGCATTTTTGTTGCTTC+TGG | + | chr8_2:57904770-57904789 | Msa1257300:intron | 40.0% |
| CCTCCACTAATTTCACGATT+TGG | - | chr8_2:57904823-57904842 | None:intergenic | 40.0% | |
| CCAAATCGTGAAATTAGTGG+AGG | + | chr8_2:57904820-57904839 | Msa1257300:CDS | 40.0% | |
| GAGAGAAGAGTTCTTTGCAA+AGG | + | chr8_2:57904856-57904875 | Msa1257300:CDS | 40.0% | |
| AAGAGAGAGGTTAGTATGCT+TGG | + | chr8_2:57905006-57905025 | Msa1257300:intron | 40.0% | |
| !! | GAAATGCTGAAGGTACTACT+AGG | + | chr8_2:57905644-57905663 | Msa1257300:intron | 40.0% |
| AGCAACACATCACTATGATC+TGG | + | chr8_2:57905668-57905687 | Msa1257300:intron | 40.0% | |
| GTCCATCTACAACAATTGAC+AGG | - | chr8_2:57905745-57905764 | None:intergenic | 40.0% | |
| TGCAATCTTCCTCATCAGAT+TGG | - | chr8_2:57905772-57905791 | None:intergenic | 40.0% | |
| GATGAGGAAGATTGCAGAAT+TGG | + | chr8_2:57905776-57905795 | Msa1257300:CDS | 40.0% | |
| CCCACAATCATCAAAGACTA+AGG | + | chr8_2:57905845-57905864 | Msa1257300:CDS | 40.0% | |
| AGCAAGAAGTCTTTCAGACT+GGG | - | chr8_2:57906016-57906035 | None:intergenic | 40.0% | |
| ! | TCTTCTGGTGATAGTTTGCA+CGG | + | chr8_2:57906069-57906088 | Msa1257300:CDS | 40.0% |
| TTTACCAGTGTTCTTGCCAA+AGG | - | chr8_2:57906196-57906215 | None:intergenic | 40.0% | |
| CAAGAACACTGGTAAACCTA+CGG | + | chr8_2:57906200-57906219 | Msa1257300:three_prime_UTR | 40.0% | |
| AAGAACACTGGTAAACCTAC+GGG | + | chr8_2:57906201-57906220 | Msa1257300:three_prime_UTR | 40.0% | |
| CAGATCCTTCTGTTCTTGAT+AGG | + | chr8_2:57906244-57906263 | Msa1257300:three_prime_UTR | 40.0% | |
| AGAACCCTATCAAGAACAGA+AGG | - | chr8_2:57906252-57906271 | None:intergenic | 40.0% | |
| TGCAGCGAGCAGTTTATATA+TGG | + | chr8_2:57906387-57906406 | Msa1257300:three_prime_UTR | 40.0% | |
| GCAGCGAGCAGTTTATATAT+GGG | + | chr8_2:57906388-57906407 | Msa1257300:three_prime_UTR | 40.0% | |
| TGTCCAATTTGACACCAAGA+AGG | - | chr8_2:57904680-57904699 | None:intergenic | 40.0% | |
| ! | TCTGAAACTTACCGCATAGT+TGG | - | chr8_2:57904706-57904725 | None:intergenic | 40.0% |
| CCAGAAGCAACAAAAATGCA+AGG | - | chr8_2:57904773-57904792 | None:intergenic | 40.0% | |
| !! | CCTTGCATTTTTGTTGCTTC+TGG | + | chr8_2:57904770-57904789 | Msa1257300:intron | 40.0% |
| CCTCCACTAATTTCACGATT+TGG | - | chr8_2:57904823-57904842 | None:intergenic | 40.0% | |
| CCAAATCGTGAAATTAGTGG+AGG | + | chr8_2:57904820-57904839 | Msa1257300:CDS | 40.0% | |
| GAGAGAAGAGTTCTTTGCAA+AGG | + | chr8_2:57904856-57904875 | Msa1257300:CDS | 40.0% | |
| AAGAGAGAGGTTAGTATGCT+TGG | + | chr8_2:57905006-57905025 | Msa1257300:intron | 40.0% | |
| !! | GAAATGCTGAAGGTACTACT+AGG | + | chr8_2:57905644-57905663 | Msa1257300:intron | 40.0% |
| AGCAACACATCACTATGATC+TGG | + | chr8_2:57905668-57905687 | Msa1257300:intron | 40.0% | |
| GTCCATCTACAACAATTGAC+AGG | - | chr8_2:57905745-57905764 | None:intergenic | 40.0% | |
| TGCAATCTTCCTCATCAGAT+TGG | - | chr8_2:57905772-57905791 | None:intergenic | 40.0% | |
| GATGAGGAAGATTGCAGAAT+TGG | + | chr8_2:57905776-57905795 | Msa1257300:CDS | 40.0% | |
| CCCACAATCATCAAAGACTA+AGG | + | chr8_2:57905845-57905864 | Msa1257300:CDS | 40.0% | |
| AGCAAGAAGTCTTTCAGACT+GGG | - | chr8_2:57906016-57906035 | None:intergenic | 40.0% | |
| ! | TCTTCTGGTGATAGTTTGCA+CGG | + | chr8_2:57906069-57906088 | Msa1257300:CDS | 40.0% |
| TTTACCAGTGTTCTTGCCAA+AGG | - | chr8_2:57906196-57906215 | None:intergenic | 40.0% | |
| CAAGAACACTGGTAAACCTA+CGG | + | chr8_2:57906200-57906219 | Msa1257300:three_prime_UTR | 40.0% | |
| AAGAACACTGGTAAACCTAC+GGG | + | chr8_2:57906201-57906220 | Msa1257300:three_prime_UTR | 40.0% | |
| CAGATCCTTCTGTTCTTGAT+AGG | + | chr8_2:57906244-57906263 | Msa1257300:three_prime_UTR | 40.0% | |
| AGAACCCTATCAAGAACAGA+AGG | - | chr8_2:57906252-57906271 | None:intergenic | 40.0% | |
| TGCAGCGAGCAGTTTATATA+TGG | + | chr8_2:57906387-57906406 | Msa1257300:three_prime_UTR | 40.0% | |
| GCATGGCTCATGATGTGATT+CGG | + | chr8_2:57904652-57904671 | Msa1257300:CDS | 45.0% | |
| CATGGCTCATGATGTGATTC+GGG | + | chr8_2:57904653-57904672 | Msa1257300:CDS | 45.0% | |
| !! | GGACCTTCTTGGTGTCAAAT+TGG | + | chr8_2:57904674-57904693 | Msa1257300:CDS | 45.0% |
| CCATGCTCGTGCTTGATTTA+GGG | - | chr8_2:57905285-57905304 | None:intergenic | 45.0% | |
| TCCATGCTCGTGCTTGATTT+AGG | - | chr8_2:57905286-57905305 | None:intergenic | 45.0% | |
| AAAGCAACTGATCTCGCTCT+TGG | - | chr8_2:57905613-57905632 | None:intergenic | 45.0% | |
| TGGACAAGACCAATCTGATG+AGG | + | chr8_2:57905760-57905779 | Msa1257300:CDS | 45.0% | |
| GATTGCAGAATTGGACGACA+TGG | + | chr8_2:57905785-57905804 | Msa1257300:CDS | 45.0% | |
| GAGCAAGAAGTCTTTCAGAC+TGG | - | chr8_2:57906017-57906036 | None:intergenic | 45.0% | |
| ACTCAGTACCGCAAATCTTC+TGG | + | chr8_2:57906054-57906073 | Msa1257300:CDS | 45.0% | |
| AACACCTTTGGCAAGAACAC+TGG | + | chr8_2:57906189-57906208 | Msa1257300:three_prime_UTR | 45.0% | |
| GCATGGCTCATGATGTGATT+CGG | + | chr8_2:57904652-57904671 | Msa1257300:CDS | 45.0% | |
| CATGGCTCATGATGTGATTC+GGG | + | chr8_2:57904653-57904672 | Msa1257300:CDS | 45.0% | |
| !! | GGACCTTCTTGGTGTCAAAT+TGG | + | chr8_2:57904674-57904693 | Msa1257300:CDS | 45.0% |
| CCATGCTCGTGCTTGATTTA+GGG | - | chr8_2:57905285-57905304 | None:intergenic | 45.0% | |
| TCCATGCTCGTGCTTGATTT+AGG | - | chr8_2:57905286-57905305 | None:intergenic | 45.0% | |
| AAAGCAACTGATCTCGCTCT+TGG | - | chr8_2:57905613-57905632 | None:intergenic | 45.0% | |
| TGGACAAGACCAATCTGATG+AGG | + | chr8_2:57905760-57905779 | Msa1257300:CDS | 45.0% | |
| GATTGCAGAATTGGACGACA+TGG | + | chr8_2:57905785-57905804 | Msa1257300:CDS | 45.0% | |
| GAGCAAGAAGTCTTTCAGAC+TGG | - | chr8_2:57906017-57906036 | None:intergenic | 45.0% | |
| ACTCAGTACCGCAAATCTTC+TGG | + | chr8_2:57906054-57906073 | Msa1257300:CDS | 45.0% | |
| AACACCTTTGGCAAGAACAC+TGG | + | chr8_2:57906189-57906208 | Msa1257300:three_prime_UTR | 45.0% | |
| GTTGGCTGCTACTGAAAGCA+TGG | + | chr8_2:57904635-57904654 | Msa1257300:CDS | 50.0% | |
| ! | GATGTGATTCGGGACCTTCT+TGG | + | chr8_2:57904663-57904682 | Msa1257300:CDS | 50.0% |
| !! | GATAACGGAGCAGTCAGACA+TGG | - | chr8_2:57905035-57905054 | None:intergenic | 50.0% |
| CCCTAAATCAAGCACGAGCA+TGG | + | chr8_2:57905282-57905301 | Msa1257300:intron | 50.0% | |
| TTCAGACTGGGACAACCTCT+TGG | - | chr8_2:57906004-57906023 | None:intergenic | 50.0% | |
| ACTGGTAAACCTACGGGCTT+TGG | + | chr8_2:57906207-57906226 | Msa1257300:three_prime_UTR | 50.0% | |
| GTTGGCTGCTACTGAAAGCA+TGG | + | chr8_2:57904635-57904654 | Msa1257300:CDS | 50.0% | |
| ! | GATGTGATTCGGGACCTTCT+TGG | + | chr8_2:57904663-57904682 | Msa1257300:CDS | 50.0% |
| !! | GATAACGGAGCAGTCAGACA+TGG | - | chr8_2:57905035-57905054 | None:intergenic | 50.0% |
| CCCTAAATCAAGCACGAGCA+TGG | + | chr8_2:57905282-57905301 | Msa1257300:intron | 50.0% | |
| TTCAGACTGGGACAACCTCT+TGG | - | chr8_2:57906004-57906023 | None:intergenic | 50.0% | |
| ACTGGTAAACCTACGGGCTT+TGG | + | chr8_2:57906207-57906226 | Msa1257300:three_prime_UTR | 50.0% | |
| ! | ACCTACGGGCTTTGGTTTCG+TGG | + | chr8_2:57906215-57906234 | Msa1257300:three_prime_UTR | 55.0% |
| ACCACGAAACCAAAGCCCGT+AGG | - | chr8_2:57906219-57906238 | None:intergenic | 55.0% | |
| ! | ACCTACGGGCTTTGGTTTCG+TGG | + | chr8_2:57906215-57906234 | Msa1257300:three_prime_UTR | 55.0% |
| ACCACGAAACCAAAGCCCGT+AGG | - | chr8_2:57906219-57906238 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 57904621 | 57906410 | 57904621 | ID=Msa1257300;Name=Msa1257300 |
| chr8_2 | mRNA | 57904621 | 57906410 | 57904621 | ID=Msa1257300-mRNA-1;Parent=Msa1257300;Name=Msa1257300-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.8|0.66|0.83|1|1|6|315|192 |
| chr8_2 | exon | 57904621 | 57904713 | 57904621 | ID=Msa1257300-mRNA-1:exon:17861;Parent=Msa1257300-mRNA-1 |
| chr8_2 | exon | 57904803 | 57904877 | 57904803 | ID=Msa1257300-mRNA-1:exon:17862;Parent=Msa1257300-mRNA-1 |
| chr8_2 | exon | 57904956 | 57905014 | 57904956 | ID=Msa1257300-mRNA-1:exon:17863;Parent=Msa1257300-mRNA-1 |
| chr8_2 | exon | 57905544 | 57905655 | 57905544 | ID=Msa1257300-mRNA-1:exon:17864;Parent=Msa1257300-mRNA-1 |
| chr8_2 | exon | 57905759 | 57905866 | 57905759 | ID=Msa1257300-mRNA-1:exon:17865;Parent=Msa1257300-mRNA-1 |
| chr8_2 | exon | 57905964 | 57906410 | 57905964 | ID=Msa1257300-mRNA-1:exon:17866;Parent=Msa1257300-mRNA-1 |
| chr8_2 | CDS | 57904621 | 57904713 | 57904621 | ID=Msa1257300-mRNA-1:cds;Parent=Msa1257300-mRNA-1 |
| chr8_2 | CDS | 57904803 | 57904877 | 57904803 | ID=Msa1257300-mRNA-1:cds;Parent=Msa1257300-mRNA-1 |
| chr8_2 | CDS | 57904956 | 57905014 | 57904956 | ID=Msa1257300-mRNA-1:cds;Parent=Msa1257300-mRNA-1 |
| chr8_2 | CDS | 57905544 | 57905655 | 57905544 | ID=Msa1257300-mRNA-1:cds;Parent=Msa1257300-mRNA-1 |
| chr8_2 | CDS | 57905759 | 57905866 | 57905759 | ID=Msa1257300-mRNA-1:cds;Parent=Msa1257300-mRNA-1 |
| chr8_2 | CDS | 57905964 | 57906095 | 57905964 | ID=Msa1257300-mRNA-1:cds;Parent=Msa1257300-mRNA-1 |
| chr8_2 | three_prime_UTR | 57906096 | 57906410 | 57906096 | ID=Msa1257300-mRNA-1:three_prime_utr;Parent=Msa1257300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
