Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087470 | sp|Q8GW72|FUCO1_ARATH | 52.954 | 457 | 203 | 5 | 32 | 482 | 31 | 481 | 7.49e-173 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087470 | G7ID38 | 96.939 | 490 | 15 | 0 | 1 | 490 | 1 | 490 | 0.0 | 991 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007990 | Msa0087470 | 0.800883 | 1.169496e-48 | -8.615850e-47 |
| Msa0017510 | Msa0087470 | 0.804190 | 2.433021e-49 | -8.615850e-47 |
| Msa0028640 | Msa0087470 | 0.803018 | 4.259004e-49 | -8.615850e-47 |
| Msa0034270 | Msa0087470 | 0.805253 | 1.459635e-49 | -8.615850e-47 |
| Msa0074240 | Msa0087470 | 0.810106 | 1.359133e-50 | -8.615850e-47 |
| Msa0087470 | Msa0142200 | 0.813193 | 2.897046e-51 | -8.615850e-47 |
| Msa0087470 | Msa0152430 | 0.801042 | 1.085188e-48 | -8.615850e-47 |
| Msa0087470 | Msa0157290 | 0.804531 | 2.066225e-49 | -8.615850e-47 |
| Msa0087470 | Msa0205840 | 0.808727 | 2.687330e-50 | -8.615850e-47 |
| Msa0087470 | Msa0218810 | 0.800046 | 1.731623e-48 | -8.615850e-47 |
| Msa0087470 | Msa0225320 | 0.802305 | 5.975555e-49 | -8.615850e-47 |
| Msa0087470 | Msa0227470 | 0.822386 | 2.434969e-53 | -8.615850e-47 |
| Msa0087470 | Msa0248970 | 0.824312 | 8.640409e-54 | -8.615850e-47 |
| Msa0087470 | Msa0276920 | 0.812480 | 4.150831e-51 | -8.615850e-47 |
| Msa0087470 | Msa0283450 | 0.802284 | 6.034597e-49 | -8.615850e-47 |
| Msa0087470 | Msa0284520 | 0.802956 | 4.385395e-49 | -8.615850e-47 |
| Msa0087470 | Msa0332000 | 0.805342 | 1.397970e-49 | -8.615850e-47 |
| Msa0087470 | Msa0363360 | 0.809516 | 1.820347e-50 | -8.615850e-47 |
| Msa0087470 | Msa0388960 | 0.823161 | 1.607679e-53 | -8.615850e-47 |
| Msa0087470 | Msa0392380 | 0.801295 | 9.629822e-49 | -8.615850e-47 |
| Msa0087470 | Msa0392510 | 0.814359 | 1.604117e-51 | -8.615850e-47 |
| Msa0087470 | Msa0417880 | 0.806880 | 6.635520e-50 | -8.615850e-47 |
| Msa0087470 | Msa0436880 | 0.804404 | 2.196135e-49 | -8.615850e-47 |
| Msa0087470 | Msa0452920 | 0.821638 | 3.630225e-53 | -8.615850e-47 |
| Msa0087470 | Msa0488790 | 0.805308 | 1.420990e-49 | -8.615850e-47 |
| Msa0087470 | Msa0495320 | 0.808427 | 3.113821e-50 | -8.615850e-47 |
| Msa0087470 | Msa0520700 | 0.807839 | 4.153691e-50 | -8.615850e-47 |
| Msa0087470 | Msa0546680 | 0.824123 | 9.570131e-54 | -8.615850e-47 |
| Msa0087470 | Msa0548150 | 0.801541 | 8.578759e-49 | -8.615850e-47 |
| Msa0087470 | Msa0553240 | 0.806835 | 6.783684e-50 | -8.615850e-47 |
| Msa0087470 | Msa0569200 | 0.801026 | 1.093526e-48 | -8.615850e-47 |
| Msa0087470 | Msa0574890 | 0.809393 | 1.934511e-50 | -8.615850e-47 |
| Msa0087470 | Msa0626450 | 0.814415 | 1.558551e-51 | -8.615850e-47 |
| Msa0087470 | Msa0626490 | 0.812545 | 4.017796e-51 | -8.615850e-47 |
| Msa0087470 | Msa0626510 | 0.800531 | 1.379719e-48 | -8.615850e-47 |
| Msa0087470 | Msa0664600 | 0.817113 | 3.901557e-52 | -8.615850e-47 |
| Msa0087470 | Msa0685900 | 0.805357 | 1.388368e-49 | -8.615850e-47 |
| Msa0087470 | Msa0712590 | 0.822180 | 2.719081e-53 | -8.615850e-47 |
| Msa0087470 | Msa0723990 | 0.819881 | 9.200261e-53 | -8.615850e-47 |
| Msa0087470 | Msa0753720 | 0.811410 | 7.100625e-51 | -8.615850e-47 |
| Msa0087470 | Msa0764570 | 0.808075 | 3.701071e-50 | -8.615850e-47 |
| Msa0087470 | Msa0816710 | 0.808010 | 3.820662e-50 | -8.615850e-47 |
| Msa0087470 | Msa0834880 | 0.819866 | 9.271949e-53 | -8.615850e-47 |
| Msa0087470 | Msa0870530 | 0.813150 | 2.960655e-51 | -8.615850e-47 |
| Msa0087470 | Msa0880140 | 0.800959 | 1.128142e-48 | -8.615850e-47 |
| Msa0087470 | Msa0903700 | 0.812802 | 3.528784e-51 | -8.615850e-47 |
| Msa0087470 | Msa0908050 | 0.805202 | 1.495667e-49 | -8.615850e-47 |
| Msa0087470 | Msa0969450 | 0.804907 | 1.723920e-49 | -8.615850e-47 |
| Msa0087470 | Msa0969520 | 0.806001 | 1.016806e-49 | -8.615850e-47 |
| Msa0087470 | Msa0973150 | 0.812724 | 3.671471e-51 | -8.615850e-47 |
| Msa0087470 | Msa0974060 | 0.814107 | 1.822954e-51 | -8.615850e-47 |
| Msa0087470 | Msa0996680 | 0.802017 | 6.849420e-49 | -8.615850e-47 |
| Msa0087470 | Msa1007270 | 0.804776 | 1.836201e-49 | -8.615850e-47 |
| Msa0087470 | Msa1024740 | 0.826218 | 3.060204e-54 | -8.615850e-47 |
| Msa0087470 | Msa1031930 | 0.803888 | 2.811243e-49 | -8.615850e-47 |
| Msa0087470 | Msa1082500 | 0.817920 | 2.567823e-52 | -8.615850e-47 |
| Msa0087470 | Msa1108790 | 0.828889 | 6.994935e-55 | -8.615850e-47 |
| Msa0087470 | Msa1137570 | 0.804372 | 2.229847e-49 | -8.615850e-47 |
| Msa0087470 | Msa1152510 | 0.819196 | 1.318684e-52 | -8.615850e-47 |
| Msa0087470 | Msa1179970 | 0.801073 | 1.069330e-48 | -8.615850e-47 |
| Msa0087470 | Msa1182860 | 0.802924 | 4.452659e-49 | -8.615850e-47 |
| Msa0087470 | Msa1219580 | 0.801699 | 7.959526e-49 | -8.615850e-47 |
| Msa0087470 | Msa1307210 | 0.800213 | 1.601552e-48 | -8.615850e-47 |
| Msa0087470 | Msa1308140 | 0.821515 | 3.874684e-53 | -8.615850e-47 |
| Msa0087470 | Msa1313150 | 0.828411 | 9.126050e-55 | -8.615850e-47 |
| Msa0087470 | Msa1341520 | 0.812080 | 5.076119e-51 | -8.615850e-47 |
| Msa0087470 | Msa1353470 | 0.826680 | 2.375414e-54 | -8.615850e-47 |
| Msa0087470 | Msa1409870 | 0.801950 | 7.069165e-49 | -8.615850e-47 |
| Msa0087470 | Msa1422420 | 0.801725 | 7.864775e-49 | -8.615850e-47 |
| Msa0087470 | Msa1423880 | 0.834919 | 2.268630e-56 | -8.615850e-47 |
| Msa0087470 | Msa1437460 | 0.809176 | 2.153251e-50 | -8.615850e-47 |
| Msa0087470 | Msa1440960 | 0.807071 | 6.044973e-50 | -8.615850e-47 |
| Msa0087470 | Msa1452120 | 0.808274 | 3.356491e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087470 | MtrunA17_Chr1g0204281 | 96.939 | 490 | 15 | 0 | 1 | 490 | 1 | 490 | 0.0 | 991 |
| Msa0087470 | MtrunA17_Chr2g0327361 | 49.443 | 449 | 214 | 7 | 40 | 481 | 63 | 505 | 2.66e-146 | 429 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087470 | AT2G28100.1 | 52.954 | 457 | 203 | 5 | 32 | 482 | 31 | 481 | 7.62e-174 | 499 |
Find 119 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGACCATTGGATTGAAATT+TGG | 0.128278 | 1_2:+68427189 | Msa0087470:CDS |
| ATCATAATGTTCCTTCATTT+TGG | 0.188136 | 1_2:+68424719 | Msa0087470:CDS |
| GCTTTACAATGAATACTATT+TGG | 0.197540 | 1_2:+68425066 | Msa0087470:CDS |
| ATAAAGATGTTAGGGAAATT+TGG | 0.214956 | 1_2:+68425337 | Msa0087470:CDS |
| GGACCATTGGATTGAAATTT+GGG | 0.220625 | 1_2:+68427190 | Msa0087470:CDS |
| TGAAAGAGATGTTCGATTAA+TGG | 0.224854 | 1_2:-68425529 | None:intergenic |
| TTATTTCTTGTATAGATCTT+TGG | 0.261651 | 1_2:+68427622 | Msa0087470:three_prime_UTR |
| CAATTCGTCCAGGATGGTTT+TGG | 0.262464 | 1_2:+68426856 | Msa0087470:CDS |
| ATTATAGATATAAAGATGTT+AGG | 0.269778 | 1_2:+68425328 | Msa0087470:intron |
| AGATAATTATATATTGTTCT+AGG | 0.272998 | 1_2:+68427488 | Msa0087470:three_prime_UTR |
| GTGCCTCTTATTTCTTCTAT+TGG | 0.273115 | 1_2:+68427416 | Msa0087470:CDS |
| GATATAAGACCAGTTGTATT+AGG | 0.280429 | 1_2:-68426972 | None:intergenic |
| CAACATATTCACAATTAAAA+TGG | 0.285708 | 1_2:+68424684 | Msa0087470:CDS |
| GGTAGCCAATCCGTCCCTTT+TGG | 0.288903 | 1_2:-68426816 | None:intergenic |
| AGCTGCCACATTGGCCCATT+GGG | 0.297882 | 1_2:-68424822 | None:intergenic |
| ATTCTGTCATTAGTAGTAAA+TGG | 0.309779 | 1_2:+68424924 | Msa0087470:CDS |
| GTTAGGGAAATTTGGTTTGA+TGG | 0.313655 | 1_2:+68425345 | Msa0087470:CDS |
| GGAGGAAAAGAGGGAGGGTT+TGG | 0.332682 | 1_2:+68427098 | Msa0087470:CDS |
| CCAATTGGATTGAATATTGA+TGG | 0.335710 | 1_2:-68424788 | None:intergenic |
| CCATCAATATTCAATCCAAT+TGG | 0.340093 | 1_2:+68424788 | Msa0087470:CDS |
| ATTAGTAGTAAATGGCAAAA+TGG | 0.351247 | 1_2:+68424932 | Msa0087470:CDS |
| AATCGAACATCTCTTTCAAT+TGG | 0.354601 | 1_2:+68425534 | Msa0087470:CDS |
| CAGCTGCCACATTGGCCCAT+TGG | 0.354819 | 1_2:-68424823 | None:intergenic |
| GTGACCATTTGTGGTCATAT+TGG | 0.356144 | 1_2:+68427141 | Msa0087470:CDS |
| AAATGCAGAAATTGTTTAGT+TGG | 0.369497 | 1_2:-68424613 | None:intergenic |
| AAGAGGCTTCATAGGCTTGA+TGG | 0.370002 | 1_2:+68427341 | Msa0087470:CDS |
| GTAAACCTTGAGTGCCAAAA+AGG | 0.377456 | 1_2:-68427452 | None:intergenic |
| CATGTAACATAGAATTTGAT+TGG | 0.389590 | 1_2:+68427568 | Msa0087470:three_prime_UTR |
| TGGGTTGTGTTGAGCCCAAT+TGG | 0.397110 | 1_2:-68424803 | None:intergenic |
| GGGCCTGATGTTAGATGGGT+GGG | 0.402888 | 1_2:+68425468 | Msa0087470:CDS |
| GGGGATGAAACAGGGACTGC+AGG | 0.403401 | 1_2:+68425489 | Msa0087470:CDS |
| TTGGTTACAAGAGGCTTCAT+AGG | 0.408848 | 1_2:+68427333 | Msa0087470:CDS |
| TTATAGATATAAAGATGTTA+GGG | 0.416709 | 1_2:+68425329 | Msa0087470:intron |
| GATAGACATGATTCTAGATA+TGG | 0.419077 | 1_2:+68425034 | Msa0087470:CDS |
| CACATTCAGTAACAGTGAAT+GGG | 0.423319 | 1_2:+68424748 | Msa0087470:CDS |
| ATAATCAAAGGGACAACAAT+TGG | 0.424832 | 1_2:+68427314 | Msa0087470:CDS |
| GAATGTTTAGTGTACTTAGA+TGG | 0.426757 | 1_2:-68424905 | None:intergenic |
| TGGGATCTATCTTTCACCTT+GGG | 0.427910 | 1_2:+68425012 | Msa0087470:CDS |
| ATGCTGGGCCTGATGTTAGA+TGG | 0.428528 | 1_2:+68425463 | Msa0087470:CDS |
| GTCAATGCAGCCACTCATAA+AGG | 0.434756 | 1_2:+68424980 | Msa0087470:CDS |
| AGATCATCATGGCTAGACTA+TGG | 0.437386 | 1_2:+68424561 | Msa0087470:exon |
| TATGTTGGGAGTGGGAGAAT+TGG | 0.437729 | 1_2:-68424668 | None:intergenic |
| GATATTTATTACAAATCTGT+TGG | 0.439112 | 1_2:+68426918 | Msa0087470:CDS |
| ATATTTATTACAAATCTGTT+GGG | 0.448093 | 1_2:+68426919 | Msa0087470:CDS |
| TTGTCTCAAAGCATCGTGAT+TGG | 0.458363 | 1_2:+68427723 | Msa0087470:three_prime_UTR |
| AATATACCTCCTAATACAAC+TGG | 0.459105 | 1_2:+68426963 | Msa0087470:CDS |
| TAGTAAATGGCAAAATGGTA+AGG | 0.461048 | 1_2:+68424937 | Msa0087470:CDS |
| ATTAGAATACAAGAAGCAAT+TGG | 0.462230 | 1_2:+68427242 | Msa0087470:CDS |
| GCCAATGTGGCAGCTGAAGC+AGG | 0.463082 | 1_2:+68424830 | Msa0087470:CDS |
| TTGGGATCTATCTTTCACCT+TGG | 0.463871 | 1_2:+68425011 | Msa0087470:CDS |
| ATTGAAATTTGGGGTAATGA+TGG | 0.465626 | 1_2:+68427200 | Msa0087470:CDS |
| CTCATAAAGGAATTGATGTT+GGG | 0.467433 | 1_2:+68424993 | Msa0087470:CDS |
| ACACATTCAGTAACAGTGAA+TGG | 0.472529 | 1_2:+68424747 | Msa0087470:CDS |
| GGCCTGATGTTAGATGGGTG+GGG | 0.474453 | 1_2:+68425469 | Msa0087470:CDS |
| CATCAATATTCAATCCAATT+GGG | 0.474760 | 1_2:+68424789 | Msa0087470:CDS |
| CTGAACACTGGTGATCCAAA+AGG | 0.480861 | 1_2:+68426801 | Msa0087470:CDS |
| ATGAATAGAGCTAAGACAAA+AGG | 0.486840 | 1_2:-68424464 | None:intergenic |
| GACCCCACGGGAAGATGATA+AGG | 0.487059 | 1_2:+68427163 | Msa0087470:CDS |
| GGGTCCAATATGACCACAAA+TGG | 0.488108 | 1_2:-68427145 | None:intergenic |
| ACTCATAAAGGAATTGATGT+TGG | 0.497734 | 1_2:+68424992 | Msa0087470:CDS |
| TACCCCAAATTTCAATCCAA+TGG | 0.503170 | 1_2:-68427193 | None:intergenic |
| GATTTATGCCAAAACCATCC+TGG | 0.504854 | 1_2:-68426864 | None:intergenic |
| TGCTGGGCCTGATGTTAGAT+GGG | 0.509805 | 1_2:+68425464 | Msa0087470:CDS |
| AATCCAATAGAAGAAATAAG+AGG | 0.511126 | 1_2:-68427419 | None:intergenic |
| GTTAAAGTTAGTAGCCAAAG+AGG | 0.511974 | 1_2:+68427077 | Msa0087470:CDS |
| TTTCCTTATCATCTTCCCGT+GGG | 0.516315 | 1_2:-68427166 | None:intergenic |
| ATGATAAGGAAAAGGACCAT+TGG | 0.516958 | 1_2:+68427177 | Msa0087470:CDS |
| GGATGAAACAGGGACTGCAG+GGG | 0.521831 | 1_2:+68425491 | Msa0087470:CDS |
| AGTAACAGTGAATGGGGTAC+AGG | 0.522204 | 1_2:+68424755 | Msa0087470:CDS |
| AGAATTGGTAATGGTGGACT+TGG | 0.522348 | 1_2:-68424653 | None:intergenic |
| TGAACACTGGTGATCCAAAA+GGG | 0.523830 | 1_2:+68426802 | Msa0087470:CDS |
| TGGGCTCAACACAACCCAAT+GGG | 0.523970 | 1_2:+68424808 | Msa0087470:CDS |
| ATACAAGAAGCAATTGGACT+TGG | 0.526995 | 1_2:+68427248 | Msa0087470:CDS |
| GTGATCCAAAAGGGACGGAT+TGG | 0.527041 | 1_2:+68426811 | Msa0087470:CDS |
| GATGGTAAATCAATAATCAA+AGG | 0.528545 | 1_2:+68427302 | Msa0087470:CDS |
| ACGGGAAGATGATAAGGAAA+AGG | 0.529325 | 1_2:+68427169 | Msa0087470:CDS |
| CGGTATGAAATTTATGTGGA+TGG | 0.530893 | 1_2:+68427284 | Msa0087470:CDS |
| GCCTGATGTTAGATGGGTGG+GGG | 0.535445 | 1_2:+68425470 | Msa0087470:CDS |
| GGGATGAAACAGGGACTGCA+GGG | 0.538975 | 1_2:+68425490 | Msa0087470:CDS |
| TAGCCAAAGAGGAGGAAAAG+AGG | 0.540334 | 1_2:+68427088 | Msa0087470:CDS |
| ATTAGATTTATAAAAGCTAG+AGG | 0.542281 | 1_2:+68427392 | Msa0087470:CDS |
| AGCCAAAGAGGAGGAAAAGA+GGG | 0.542952 | 1_2:+68427089 | Msa0087470:CDS |
| TCCTGCTTCAGCTGCCACAT+TGG | 0.544247 | 1_2:-68424831 | None:intergenic |
| ATGGTAAATCAATAATCAAA+GGG | 0.544860 | 1_2:+68427303 | Msa0087470:CDS |
| TGTTGGATAGTGACCATTTG+TGG | 0.550799 | 1_2:+68427132 | Msa0087470:CDS |
| AGTGGGAGAATTGGTAATGG+TGG | 0.551441 | 1_2:-68424659 | None:intergenic |
| ATGTTTCAATTCGTCCAGGA+TGG | 0.551993 | 1_2:+68426850 | Msa0087470:CDS |
| CGAACGGTATGAAATTTATG+TGG | 0.552572 | 1_2:+68427280 | Msa0087470:CDS |
| TGTGATGTTTCAATTCGTCC+AGG | 0.557675 | 1_2:+68426846 | Msa0087470:CDS |
| AATTGTGAATATGTTGGGAG+TGG | 0.561756 | 1_2:-68424677 | None:intergenic |
| AGTAAATGGCAAAATGGTAA+GGG | 0.562737 | 1_2:+68424938 | Msa0087470:CDS |
| TGGGCCTGATGTTAGATGGG+TGG | 0.564890 | 1_2:+68425467 | Msa0087470:CDS |
| ATTGAAACATCACATTCTGC+TGG | 0.577257 | 1_2:-68426837 | None:intergenic |
| GGACTGCAGGGGACACGTGT+TGG | 0.580171 | 1_2:+68425502 | Msa0087470:CDS |
| AACATCAATTCCTTTATGAG+TGG | 0.581747 | 1_2:-68424990 | None:intergenic |
| GGACAACAATTGGTTACAAG+AGG | 0.582247 | 1_2:+68427324 | Msa0087470:CDS |
| ATTGTGAATATGTTGGGAGT+GGG | 0.592387 | 1_2:-68424676 | None:intergenic |
| TTAACTGCAAAACACCATGA+TGG | 0.593261 | 1_2:+68424869 | Msa0087470:CDS |
| GTGGTCATATTGGACCCCAC+GGG | 0.597817 | 1_2:+68427151 | Msa0087470:CDS |
| GCCAGAGACAAAATCCATCA+TGG | 0.599754 | 1_2:-68424883 | None:intergenic |
| CACTGGTGATCCAAAAGGGA+CGG | 0.599997 | 1_2:+68426806 | Msa0087470:CDS |
| TTGGGCTCAACACAACCCAA+TGG | 0.600556 | 1_2:+68424807 | Msa0087470:CDS |
| AGAAAATAAATAATTCTATG+TGG | 0.602104 | 1_2:+68427542 | Msa0087470:three_prime_UTR |
| TGTGGTCATATTGGACCCCA+CGG | 0.603037 | 1_2:+68427150 | Msa0087470:CDS |
| GGGAGTGGGAGAATTGGTAA+TGG | 0.606935 | 1_2:-68424662 | None:intergenic |
| TGATGGAGCAAAAGATCCCA+AGG | 0.618842 | 1_2:+68425362 | Msa0087470:CDS |
| ATAAGACCAGTTGTATTAGG+AGG | 0.619708 | 1_2:-68426969 | None:intergenic |
| CACAACCCAATGGGCCAATG+TGG | 0.621945 | 1_2:+68424817 | Msa0087470:CDS |
| CTAGAATCATGTCTATCCCA+AGG | 0.622150 | 1_2:-68425028 | None:intergenic |
| ATGTGTTGACACCAAAATGA+AGG | 0.623081 | 1_2:-68424730 | None:intergenic |
| GTTTGGTCCAGAAAACATGT+TGG | 0.626617 | 1_2:+68427115 | Msa0087470:CDS |
| AAAGTTAGTAGCCAAAGAGG+AGG | 0.630290 | 1_2:+68427080 | Msa0087470:CDS |
| CAAAGAGGAGGAAAAGAGGG+AGG | 0.639964 | 1_2:+68427092 | Msa0087470:CDS |
| GACCATTGGATTGAAATTTG+GGG | 0.640619 | 1_2:+68427191 | Msa0087470:CDS |
| CAATGCAGGTATCTGAACAC+TGG | 0.649417 | 1_2:+68426789 | Msa0087470:intron |
| TTCCTTATCATCTTCCCGTG+GGG | 0.651640 | 1_2:-68427165 | None:intergenic |
| AAAGAGGAGGAAAAGAGGGA+GGG | 0.660173 | 1_2:+68427093 | Msa0087470:CDS |
| ACATTCAGTAACAGTGAATG+GGG | 0.660353 | 1_2:+68424749 | Msa0087470:CDS |
| GACTTGGTCAAAGAATCGAA+CGG | 0.716057 | 1_2:+68427264 | Msa0087470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAAAAACTTTTGAT+CGG | - | chr1_2:68426220-68426239 | None:intergenic | 10.0% |
| !!! | TTTTTCTTTTTATTTTTTAG+AGG | + | chr1_2:68426569-68426588 | Msa0087470:intron | 10.0% |
| !!! | TTGTTTTTTTCTTTTTTGTT+TGG | - | chr1_2:68424538-68424557 | None:intergenic | 15.0% |
| !!! | ATTTTAATTGTGAATATGTT+GGG | - | chr1_2:68424685-68424704 | None:intergenic | 15.0% |
| !!! | CGTAACTTTTATTAAAATTA+TGG | - | chr1_2:68425223-68425242 | None:intergenic | 15.0% |
| !! | CAATAAATTTGATAAAATCA+CGG | - | chr1_2:68425253-68425272 | None:intergenic | 15.0% |
| !! | ATTATAGATATAAAGATGTT+AGG | + | chr1_2:68425328-68425347 | Msa0087470:intron | 15.0% |
| !! | TTATAGATATAAAGATGTTA+GGG | + | chr1_2:68425329-68425348 | Msa0087470:intron | 15.0% |
| !!! | TTACATATTATTTTTCAGAT+TGG | + | chr1_2:68425394-68425413 | Msa0087470:CDS | 15.0% |
| !!! | CTATTTTATCATCAATTTTA+GGG | - | chr1_2:68426162-68426181 | None:intergenic | 15.0% |
| !!! | TCTATTTTATCATCAATTTT+AGG | - | chr1_2:68426163-68426182 | None:intergenic | 15.0% |
| !!! | AATTATATTAAACAGTTTTG+AGG | + | chr1_2:68426262-68426281 | Msa0087470:intron | 15.0% |
| !!! | ACATATTACATTCAATTTTA+AGG | - | chr1_2:68426410-68426429 | None:intergenic | 15.0% |
| !! | TAAAATTGAATGTAATATGT+CGG | + | chr1_2:68426410-68426429 | Msa0087470:intron | 15.0% |
| !! | AAACTAGTAAAATATTTAGT+GGG | + | chr1_2:68426635-68426654 | Msa0087470:intron | 15.0% |
| !!! | TTAATATAATTTGTTCATGA+TGG | - | chr1_2:68426703-68426722 | None:intergenic | 15.0% |
| !! | ATATTTATTACAAATCTGTT+GGG | + | chr1_2:68426919-68426938 | Msa0087470:CDS | 15.0% |
| !! | AGATAATTATATATTGTTCT+AGG | + | chr1_2:68427488-68427507 | Msa0087470:three_prime_UTR | 15.0% |
| !! | AGAAAATAAATAATTCTATG+TGG | + | chr1_2:68427542-68427561 | Msa0087470:three_prime_UTR | 15.0% |
| !!! | CATTTTAATTGTGAATATGT+TGG | - | chr1_2:68424686-68424705 | None:intergenic | 20.0% |
| !! | CAACATATTCACAATTAAAA+TGG | + | chr1_2:68424684-68424703 | Msa0087470:CDS | 20.0% |
| !! | GTCAAATTCTTAATTATCAT+TGG | - | chr1_2:68425289-68425308 | None:intergenic | 20.0% |
| !! | TAATTGAAGACTTAATTAGT+TGG | - | chr1_2:68425939-68425958 | None:intergenic | 20.0% |
| !!! | AACAAAAGGAACTTTATTTT+AGG | + | chr1_2:68426110-68426129 | Msa0087470:intron | 20.0% |
| !!! | ACTTTATTTTAGGAATTTTG+AGG | + | chr1_2:68426120-68426139 | Msa0087470:intron | 20.0% |
| !!! | ATCAAATACATTTGACTTTT+TGG | + | chr1_2:68426360-68426379 | Msa0087470:intron | 20.0% |
| !!! | TTTGGCTTAATTGAATATTT+AGG | - | chr1_2:68426535-68426554 | None:intergenic | 20.0% |
| !! | CAAACTAGTAAAATATTTAG+TGG | + | chr1_2:68426634-68426653 | Msa0087470:intron | 20.0% |
| !! | GATATTTATTACAAATCTGT+TGG | + | chr1_2:68426918-68426937 | Msa0087470:CDS | 20.0% |
| !! | ATGGTAAATCAATAATCAAA+GGG | + | chr1_2:68427303-68427322 | Msa0087470:CDS | 20.0% |
| !! | ATTAGATTTATAAAAGCTAG+AGG | + | chr1_2:68427392-68427411 | Msa0087470:CDS | 20.0% |
| !!! | TTATTTCTTGTATAGATCTT+TGG | + | chr1_2:68427622-68427641 | Msa0087470:three_prime_UTR | 20.0% |
| !!! | TTTGAGACAAAAATATTGAA+TGG | - | chr1_2:68427713-68427732 | None:intergenic | 20.0% |
| !!! | TTTGTTTGGTTTTCTTTTGA+GGG | - | chr1_2:68424524-68424543 | None:intergenic | 25.0% |
| !!! | TTTTGTTTGGTTTTCTTTTG+AGG | - | chr1_2:68424525-68424544 | None:intergenic | 25.0% |
| ! | AAAAACAATCAAGATCATCA+TGG | + | chr1_2:68424550-68424569 | Msa0087470:exon | 25.0% |
| ! | AAATGCAGAAATTGTTTAGT+TGG | - | chr1_2:68424616-68424635 | None:intergenic | 25.0% |
| !! | ATCATAATGTTCCTTCATTT+TGG | + | chr1_2:68424719-68424738 | Msa0087470:CDS | 25.0% |
| ! | CATCAATATTCAATCCAATT+GGG | + | chr1_2:68424789-68424808 | Msa0087470:CDS | 25.0% |
| ! | ATTCTGTCATTAGTAGTAAA+TGG | + | chr1_2:68424924-68424943 | Msa0087470:CDS | 25.0% |
| ! | ATTAGTAGTAAATGGCAAAA+TGG | + | chr1_2:68424932-68424951 | Msa0087470:CDS | 25.0% |
| ! | GCTTTACAATGAATACTATT+TGG | + | chr1_2:68425066-68425085 | Msa0087470:CDS | 25.0% |
| ! | CTTAATTATCATTGGATATC+TGG | - | chr1_2:68425281-68425300 | None:intergenic | 25.0% |
| ! | ATAAAGATGTTAGGGAAATT+TGG | + | chr1_2:68425337-68425356 | Msa0087470:CDS | 25.0% |
| !!! | TTTTTCAGATTGGTTTTCTA+TGG | + | chr1_2:68425404-68425423 | Msa0087470:CDS | 25.0% |
| !!! | TGTAGAATAAACCACTTTTT+TGG | - | chr1_2:68425616-68425635 | None:intergenic | 25.0% |
| ! | TTAACATAGCTAGAATGATA+AGG | + | chr1_2:68425666-68425685 | Msa0087470:intron | 25.0% |
| ! | TCCTTTCTAAATCAAAAGTA+AGG | + | chr1_2:68425803-68425822 | Msa0087470:intron | 25.0% |
| !!! | ACCTTACTTTTGATTTAGAA+AGG | - | chr1_2:68425807-68425826 | None:intergenic | 25.0% |
| ! | TTCTAAATCAAAAGTAAGGT+AGG | + | chr1_2:68425807-68425826 | Msa0087470:intron | 25.0% |
| ! | ATCCTAAGCAAAAAAAATGT+GGG | + | chr1_2:68425848-68425867 | Msa0087470:intron | 25.0% |
| ! | TAAGTCCTTCCAAAATTTAA+TGG | + | chr1_2:68425984-68426003 | Msa0087470:intron | 25.0% |
| !! | ACATTTGGACCATTAAATTT+TGG | - | chr1_2:68425996-68426015 | None:intergenic | 25.0% |
| ! | AGCATTCTAACATTAACATT+TGG | - | chr1_2:68426011-68426030 | None:intergenic | 25.0% |
| ! | AAACATGACATCAACAATTA+GGG | + | chr1_2:68426063-68426082 | Msa0087470:intron | 25.0% |
| !!! | TTATCATCAATTTTAGGGTT+AGG | - | chr1_2:68426157-68426176 | None:intergenic | 25.0% |
| !! | CTTTTGATCGGAATATAAAT+TGG | - | chr1_2:68426208-68426227 | None:intergenic | 25.0% |
| ! | AAGCAAAAGTAAAATGCATT+TGG | + | chr1_2:68426326-68426345 | Msa0087470:intron | 25.0% |
| ! | AATTGCATAATCATGATACA+TGG | + | chr1_2:68426506-68426525 | Msa0087470:intron | 25.0% |
| ! | ATTGCATAATCATGATACAT+GGG | + | chr1_2:68426507-68426526 | Msa0087470:intron | 25.0% |
| !! | AAAAGTCAACACTACTATTT+TGG | - | chr1_2:68426553-68426572 | None:intergenic | 25.0% |
| ! | AGTAAAATATTTAGTGGGAT+CGG | + | chr1_2:68426640-68426659 | Msa0087470:intron | 25.0% |
| ! | CAAAAAGCAAAACAAATCAA+CGG | + | chr1_2:68426675-68426694 | Msa0087470:intron | 25.0% |
| ! | ATTAGAATACAAGAAGCAAT+TGG | + | chr1_2:68427242-68427261 | Msa0087470:CDS | 25.0% |
| ! | GATGGTAAATCAATAATCAA+AGG | + | chr1_2:68427302-68427321 | Msa0087470:CDS | 25.0% |
| ! | AATCCAATAGAAGAAATAAG+AGG | - | chr1_2:68427422-68427441 | None:intergenic | 25.0% |
| !!! | GATTACATTTTGATCCTTTT+TGG | + | chr1_2:68427438-68427457 | Msa0087470:CDS | 25.0% |
| ! | CATGTAACATAGAATTTGAT+TGG | + | chr1_2:68427568-68427587 | Msa0087470:three_prime_UTR | 25.0% |
| ATGAATAGAGCTAAGACAAA+AGG | - | chr1_2:68424467-68424486 | None:intergenic | 30.0% | |
| CCAATTGGATTGAATATTGA+TGG | - | chr1_2:68424791-68424810 | None:intergenic | 30.0% | |
| CCATCAATATTCAATCCAAT+TGG | + | chr1_2:68424788-68424807 | Msa0087470:CDS | 30.0% | |
| GAATGTTTAGTGTACTTAGA+TGG | - | chr1_2:68424908-68424927 | None:intergenic | 30.0% | |
| TAGTAAATGGCAAAATGGTA+AGG | + | chr1_2:68424937-68424956 | Msa0087470:CDS | 30.0% | |
| AGTAAATGGCAAAATGGTAA+GGG | + | chr1_2:68424938-68424957 | Msa0087470:CDS | 30.0% | |
| AACATCAATTCCTTTATGAG+TGG | - | chr1_2:68424993-68425012 | None:intergenic | 30.0% | |
| ACTCATAAAGGAATTGATGT+TGG | + | chr1_2:68424992-68425011 | Msa0087470:CDS | 30.0% | |
| CTCATAAAGGAATTGATGTT+GGG | + | chr1_2:68424993-68425012 | Msa0087470:CDS | 30.0% | |
| GATAGACATGATTCTAGATA+TGG | + | chr1_2:68425034-68425053 | Msa0087470:CDS | 30.0% | |
| TCATAGATTAAGTGCATGTT+TGG | + | chr1_2:68425162-68425181 | Msa0087470:intron | 30.0% | |
| ! | TATGTAACATTTTGTGCCTT+GGG | - | chr1_2:68425381-68425400 | None:intergenic | 30.0% |
| ! | ATATGTAACATTTTGTGCCT+TGG | - | chr1_2:68425382-68425401 | None:intergenic | 30.0% |
| ! | ATCAATATTTTCTCAGATGC+TGG | + | chr1_2:68425447-68425466 | Msa0087470:CDS | 30.0% |
| ! | TCAATATTTTCTCAGATGCT+GGG | + | chr1_2:68425448-68425467 | Msa0087470:CDS | 30.0% |
| TGAAAGAGATGTTCGATTAA+TGG | - | chr1_2:68425532-68425551 | None:intergenic | 30.0% | |
| AATCGAACATCTCTTTCAAT+TGG | + | chr1_2:68425534-68425553 | Msa0087470:CDS | 30.0% | |
| ATAGCTAGAATGATAAGGTA+CGG | + | chr1_2:68425671-68425690 | Msa0087470:intron | 30.0% | |
| !!! | CACATTTTTTTTGCTTAGGA+TGG | - | chr1_2:68425849-68425868 | None:intergenic | 30.0% |
| CATCCTAAGCAAAAAAAATG+TGG | + | chr1_2:68425847-68425866 | Msa0087470:intron | 30.0% | |
| !!! | AACCCACATTTTTTTTGCTT+AGG | - | chr1_2:68425853-68425872 | None:intergenic | 30.0% |
| CTTAATTAGTTGGTTGCTTA+GGG | - | chr1_2:68425929-68425948 | None:intergenic | 30.0% | |
| ACTTAATTAGTTGGTTGCTT+AGG | - | chr1_2:68425930-68425949 | None:intergenic | 30.0% | |
| ! | TTGGACCATTAAATTTTGGA+AGG | - | chr1_2:68425992-68426011 | None:intergenic | 30.0% |
| CAAACATGACATCAACAATT+AGG | + | chr1_2:68426062-68426081 | Msa0087470:intron | 30.0% | |
| AAAGAGAGAACACTAACAAA+AGG | + | chr1_2:68426096-68426115 | Msa0087470:intron | 30.0% | |
| GTTATATTTATGACCGAAGA+TGG | + | chr1_2:68426382-68426401 | Msa0087470:intron | 30.0% | |
| !!! | CAATTTTAAGGTACCATCTT+CGG | - | chr1_2:68426398-68426417 | None:intergenic | 30.0% |
| ! | CAATTTTCTTCTCACACATA+TGG | - | chr1_2:68426491-68426510 | None:intergenic | 30.0% |
| TTGCATAATCATGATACATG+GGG | + | chr1_2:68426508-68426527 | Msa0087470:intron | 30.0% | |
| !!! | AGTAGCTCACTTAGTTTTTT+TGG | - | chr1_2:68426897-68426916 | None:intergenic | 30.0% |
| AATATACCTCCTAATACAAC+TGG | + | chr1_2:68426963-68426982 | Msa0087470:CDS | 30.0% | |
| GATATAAGACCAGTTGTATT+AGG | - | chr1_2:68426975-68426994 | None:intergenic | 30.0% | |
| ! | ATTGAAATTTGGGGTAATGA+TGG | + | chr1_2:68427200-68427219 | Msa0087470:CDS | 30.0% |
| ATAATCAAAGGGACAACAAT+TGG | + | chr1_2:68427314-68427333 | Msa0087470:CDS | 30.0% | |
| ATTGTGAATATGTTGGGAGT+GGG | - | chr1_2:68424679-68424698 | None:intergenic | 35.0% | |
| AATTGTGAATATGTTGGGAG+TGG | - | chr1_2:68424680-68424699 | None:intergenic | 35.0% | |
| ! | ATGTGTTGACACCAAAATGA+AGG | - | chr1_2:68424733-68424752 | None:intergenic | 35.0% |
| ACACATTCAGTAACAGTGAA+TGG | + | chr1_2:68424747-68424766 | Msa0087470:CDS | 35.0% | |
| CACATTCAGTAACAGTGAAT+GGG | + | chr1_2:68424748-68424767 | Msa0087470:CDS | 35.0% | |
| ACATTCAGTAACAGTGAATG+GGG | + | chr1_2:68424749-68424768 | Msa0087470:CDS | 35.0% | |
| TTAACTGCAAAACACCATGA+TGG | + | chr1_2:68424869-68424888 | Msa0087470:CDS | 35.0% | |
| CGACGGTAAATTTAGAAGAA+TGG | + | chr1_2:68425187-68425206 | Msa0087470:intron | 35.0% | |
| !! | GTTAGGGAAATTTGGTTTGA+TGG | + | chr1_2:68425345-68425364 | Msa0087470:CDS | 35.0% |
| ACCATAGATTTCAGTGTAAG+TGG | - | chr1_2:68425644-68425663 | None:intergenic | 35.0% | |
| GATTTATGAGACAACGAGTT+TGG | - | chr1_2:68425877-68425896 | None:intergenic | 35.0% | |
| CATATGGCTGGAAATAGTTT+AGG | - | chr1_2:68426475-68426494 | None:intergenic | 35.0% | |
| ! | ACTAGTTTGATACACACATG+AGG | - | chr1_2:68426623-68426642 | None:intergenic | 35.0% |
| ATTCATGCTAATCACAATGC+AGG | + | chr1_2:68426775-68426794 | Msa0087470:intron | 35.0% | |
| ATTGAAACATCACATTCTGC+TGG | - | chr1_2:68426840-68426859 | None:intergenic | 35.0% | |
| ATAAGACCAGTTGTATTAGG+AGG | - | chr1_2:68426972-68426991 | None:intergenic | 35.0% | |
| GTTAAAGTTAGTAGCCAAAG+AGG | + | chr1_2:68427077-68427096 | Msa0087470:CDS | 35.0% | |
| ! | TCACTATCCAACATGTTTTC+TGG | - | chr1_2:68427125-68427144 | None:intergenic | 35.0% |
| ATGATAAGGAAAAGGACCAT+TGG | + | chr1_2:68427177-68427196 | Msa0087470:CDS | 35.0% | |
| AGGACCATTGGATTGAAATT+TGG | + | chr1_2:68427189-68427208 | Msa0087470:CDS | 35.0% | |
| GGACCATTGGATTGAAATTT+GGG | + | chr1_2:68427190-68427209 | Msa0087470:CDS | 35.0% | |
| GACCATTGGATTGAAATTTG+GGG | + | chr1_2:68427191-68427210 | Msa0087470:CDS | 35.0% | |
| TACCCCAAATTTCAATCCAA+TGG | - | chr1_2:68427196-68427215 | None:intergenic | 35.0% | |
| ATACAAGAAGCAATTGGACT+TGG | + | chr1_2:68427248-68427267 | Msa0087470:CDS | 35.0% | |
| CGAACGGTATGAAATTTATG+TGG | + | chr1_2:68427280-68427299 | Msa0087470:CDS | 35.0% | |
| CGGTATGAAATTTATGTGGA+TGG | + | chr1_2:68427284-68427303 | Msa0087470:CDS | 35.0% | |
| ! | GTGCCTCTTATTTCTTCTAT+TGG | + | chr1_2:68427416-68427435 | Msa0087470:CDS | 35.0% |
| !! | GTTTTCTTTTGAGGGTTGAG+GGG | - | chr1_2:68424516-68424535 | None:intergenic | 40.0% |
| !! | GGTTTTCTTTTGAGGGTTGA+GGG | - | chr1_2:68424517-68424536 | None:intergenic | 40.0% |
| !! | TGGTTTTCTTTTGAGGGTTG+AGG | - | chr1_2:68424518-68424537 | None:intergenic | 40.0% |
| AGATCATCATGGCTAGACTA+TGG | + | chr1_2:68424561-68424580 | Msa0087470:exon | 40.0% | |
| !! | AGAATTGGTAATGGTGGACT+TGG | - | chr1_2:68424656-68424675 | None:intergenic | 40.0% |
| !!! | ACCATGATGGATTTTGTCTC+TGG | + | chr1_2:68424882-68424901 | Msa0087470:CDS | 40.0% |
| TTGGGATCTATCTTTCACCT+TGG | + | chr1_2:68425011-68425030 | Msa0087470:CDS | 40.0% | |
| TGGGATCTATCTTTCACCTT+GGG | + | chr1_2:68425012-68425031 | Msa0087470:CDS | 40.0% | |
| CTAGAATCATGTCTATCCCA+AGG | - | chr1_2:68425031-68425050 | None:intergenic | 40.0% | |
| TAAGTGCATGTTTGGATCGA+CGG | + | chr1_2:68425170-68425189 | Msa0087470:intron | 40.0% | |
| ! | GCAAAAGCATGCCAAAAAAG+TGG | + | chr1_2:68425602-68425621 | Msa0087470:intron | 40.0% |
| GCCACTTACACTGAAATCTA+TGG | + | chr1_2:68425640-68425659 | Msa0087470:intron | 40.0% | |
| TGATCTCCACTCAGATCAAA+AGG | + | chr1_2:68425738-68425757 | Msa0087470:intron | 40.0% | |
| ! | CTCTTTCCTTTTGATCTGAG+TGG | - | chr1_2:68425747-68425766 | None:intergenic | 40.0% |
| AGAATGCTAAGCTAGATGTG+AGG | + | chr1_2:68426023-68426042 | Msa0087470:intron | 40.0% | |
| AATATGTCGGTCTCATGCTA+AGG | + | chr1_2:68426423-68426442 | Msa0087470:intron | 40.0% | |
| CTCATGCTAAGGTCAAACTT+AGG | + | chr1_2:68426434-68426453 | Msa0087470:intron | 40.0% | |
| TTTCTTCTCACACATATGGC+TGG | - | chr1_2:68426487-68426506 | None:intergenic | 40.0% | |
| TGAACACTGGTGATCCAAAA+GGG | + | chr1_2:68426802-68426821 | Msa0087470:CDS | 40.0% | |
| TGTGATGTTTCAATTCGTCC+AGG | + | chr1_2:68426846-68426865 | Msa0087470:CDS | 40.0% | |
| ATGTTTCAATTCGTCCAGGA+TGG | + | chr1_2:68426850-68426869 | Msa0087470:CDS | 40.0% | |
| GATTTATGCCAAAACCATCC+TGG | - | chr1_2:68426867-68426886 | None:intergenic | 40.0% | |
| AAAGTTAGTAGCCAAAGAGG+AGG | + | chr1_2:68427080-68427099 | Msa0087470:CDS | 40.0% | |
| GTTTGGTCCAGAAAACATGT+TGG | + | chr1_2:68427115-68427134 | Msa0087470:CDS | 40.0% | |
| TGTTGGATAGTGACCATTTG+TGG | + | chr1_2:68427132-68427151 | Msa0087470:CDS | 40.0% | |
| GTGACCATTTGTGGTCATAT+TGG | + | chr1_2:68427141-68427160 | Msa0087470:CDS | 40.0% | |
| TTTCCTTATCATCTTCCCGT+GGG | - | chr1_2:68427169-68427188 | None:intergenic | 40.0% | |
| ! | TTTTCCTTATCATCTTCCCG+TGG | - | chr1_2:68427170-68427189 | None:intergenic | 40.0% |
| ACGGGAAGATGATAAGGAAA+AGG | + | chr1_2:68427169-68427188 | Msa0087470:CDS | 40.0% | |
| ! | GACTTGGTCAAAGAATCGAA+CGG | + | chr1_2:68427264-68427283 | Msa0087470:CDS | 40.0% |
| GGACAACAATTGGTTACAAG+AGG | + | chr1_2:68427324-68427343 | Msa0087470:CDS | 40.0% | |
| TTGGTTACAAGAGGCTTCAT+AGG | + | chr1_2:68427333-68427352 | Msa0087470:CDS | 40.0% | |
| !! | TTGATCCTTTTTGGCACTCA+AGG | + | chr1_2:68427447-68427466 | Msa0087470:CDS | 40.0% |
| GTAAACCTTGAGTGCCAAAA+AGG | - | chr1_2:68427455-68427474 | None:intergenic | 40.0% | |
| !! | TTGTCTCAAAGCATCGTGAT+TGG | + | chr1_2:68427723-68427742 | Msa0087470:three_prime_UTR | 40.0% |
| !! | TTTTGAGGGTTGAGGGGAAT+GGG | - | chr1_2:68424510-68424529 | None:intergenic | 45.0% |
| !! | AGTGGGAGAATTGGTAATGG+TGG | - | chr1_2:68424662-68424681 | None:intergenic | 45.0% |
| TATGTTGGGAGTGGGAGAAT+TGG | - | chr1_2:68424671-68424690 | None:intergenic | 45.0% | |
| AGTAACAGTGAATGGGGTAC+AGG | + | chr1_2:68424755-68424774 | Msa0087470:CDS | 45.0% | |
| GCCAGAGACAAAATCCATCA+TGG | - | chr1_2:68424886-68424905 | None:intergenic | 45.0% | |
| GTCAATGCAGCCACTCATAA+AGG | + | chr1_2:68424980-68424999 | Msa0087470:CDS | 45.0% | |
| TGATGGAGCAAAAGATCCCA+AGG | + | chr1_2:68425362-68425381 | Msa0087470:CDS | 45.0% | |
| CAATGCAGGTATCTGAACAC+TGG | + | chr1_2:68426789-68426808 | Msa0087470:intron | 45.0% | |
| CTGAACACTGGTGATCCAAA+AGG | + | chr1_2:68426801-68426820 | Msa0087470:CDS | 45.0% | |
| ! | CAATTCGTCCAGGATGGTTT+TGG | + | chr1_2:68426856-68426875 | Msa0087470:CDS | 45.0% |
| TAGCCAAAGAGGAGGAAAAG+AGG | + | chr1_2:68427088-68427107 | Msa0087470:CDS | 45.0% | |
| AGCCAAAGAGGAGGAAAAGA+GGG | + | chr1_2:68427089-68427108 | Msa0087470:CDS | 45.0% | |
| AAAGAGGAGGAAAAGAGGGA+GGG | + | chr1_2:68427093-68427112 | Msa0087470:CDS | 45.0% | |
| GGGTCCAATATGACCACAAA+TGG | - | chr1_2:68427148-68427167 | None:intergenic | 45.0% | |
| TTCCTTATCATCTTCCCGTG+GGG | - | chr1_2:68427168-68427187 | None:intergenic | 45.0% | |
| AAGAGGCTTCATAGGCTTGA+TGG | + | chr1_2:68427341-68427360 | Msa0087470:CDS | 45.0% | |
| !! | AAGTATAATAAAAATATTAT+AGG | - | chr1_2:68426742-68426761 | None:intergenic | 5.0% |
| !!! | ATATTTTTATTATACTTTTT+AGG | + | chr1_2:68426745-68426764 | Msa0087470:intron | 5.0% |
| !! | CTTTTGAGGGTTGAGGGGAA+TGG | - | chr1_2:68424511-68424530 | None:intergenic | 50.0% |
| GGGAGTGGGAGAATTGGTAA+TGG | - | chr1_2:68424665-68424684 | None:intergenic | 50.0% | |
| TGGGTTGTGTTGAGCCCAAT+TGG | - | chr1_2:68424806-68424825 | None:intergenic | 50.0% | |
| TTGGGCTCAACACAACCCAA+TGG | + | chr1_2:68424807-68424826 | Msa0087470:CDS | 50.0% | |
| TGGGCTCAACACAACCCAAT+GGG | + | chr1_2:68424808-68424827 | Msa0087470:CDS | 50.0% | |
| ATGCTGGGCCTGATGTTAGA+TGG | + | chr1_2:68425463-68425482 | Msa0087470:CDS | 50.0% | |
| TGCTGGGCCTGATGTTAGAT+GGG | + | chr1_2:68425464-68425483 | Msa0087470:CDS | 50.0% | |
| ACACATGAGGAACACGCAGA+GGG | - | chr1_2:68426610-68426629 | None:intergenic | 50.0% | |
| CACTGGTGATCCAAAAGGGA+CGG | + | chr1_2:68426806-68426825 | Msa0087470:CDS | 50.0% | |
| GTGATCCAAAAGGGACGGAT+TGG | + | chr1_2:68426811-68426830 | Msa0087470:CDS | 50.0% | |
| ! | CTCCCTCTTTTCCTCCTCTT+TGG | - | chr1_2:68427094-68427113 | None:intergenic | 50.0% |
| CAAAGAGGAGGAAAAGAGGG+AGG | + | chr1_2:68427092-68427111 | Msa0087470:CDS | 50.0% | |
| TGTGGTCATATTGGACCCCA+CGG | + | chr1_2:68427150-68427169 | Msa0087470:CDS | 50.0% | |
| CACAACCCAATGGGCCAATG+TGG | + | chr1_2:68424817-68424836 | Msa0087470:CDS | 55.0% | |
| AGCTGCCACATTGGCCCATT+GGG | - | chr1_2:68424825-68424844 | None:intergenic | 55.0% | |
| TCCTGCTTCAGCTGCCACAT+TGG | - | chr1_2:68424834-68424853 | None:intergenic | 55.0% | |
| TGGGCCTGATGTTAGATGGG+TGG | + | chr1_2:68425467-68425486 | Msa0087470:CDS | 55.0% | |
| GGGCCTGATGTTAGATGGGT+GGG | + | chr1_2:68425468-68425487 | Msa0087470:CDS | 55.0% | |
| GGCCTGATGTTAGATGGGTG+GGG | + | chr1_2:68425469-68425488 | Msa0087470:CDS | 55.0% | |
| GCCTGATGTTAGATGGGTGG+GGG | + | chr1_2:68425470-68425489 | Msa0087470:CDS | 55.0% | |
| TCCCCCACCCATCTAACATC+AGG | - | chr1_2:68425474-68425493 | None:intergenic | 55.0% | |
| AGATGGGTGGGGGATGAAAC+AGG | + | chr1_2:68425480-68425499 | Msa0087470:CDS | 55.0% | |
| GATGGGTGGGGGATGAAACA+GGG | + | chr1_2:68425481-68425500 | Msa0087470:CDS | 55.0% | |
| GGGATGAAACAGGGACTGCA+GGG | + | chr1_2:68425490-68425509 | Msa0087470:CDS | 55.0% | |
| GGATGAAACAGGGACTGCAG+GGG | + | chr1_2:68425491-68425510 | Msa0087470:CDS | 55.0% | |
| CACACATGAGGAACACGCAG+AGG | - | chr1_2:68426611-68426630 | None:intergenic | 55.0% | |
| ! | GGTAGCCAATCCGTCCCTTT+TGG | - | chr1_2:68426819-68426838 | None:intergenic | 55.0% |
| GGAGGAAAAGAGGGAGGGTT+TGG | + | chr1_2:68427098-68427117 | Msa0087470:CDS | 55.0% | |
| GTGGTCATATTGGACCCCAC+GGG | + | chr1_2:68427151-68427170 | Msa0087470:CDS | 55.0% | |
| GACCCCACGGGAAGATGATA+AGG | + | chr1_2:68427163-68427182 | Msa0087470:CDS | 55.0% | |
| CAGCTGCCACATTGGCCCAT+TGG | - | chr1_2:68424826-68424845 | None:intergenic | 60.0% | |
| GCCAATGTGGCAGCTGAAGC+AGG | + | chr1_2:68424830-68424849 | Msa0087470:CDS | 60.0% | |
| GGGGATGAAACAGGGACTGC+AGG | + | chr1_2:68425489-68425508 | Msa0087470:CDS | 60.0% | |
| GGACTGCAGGGGACACGTGT+TGG | + | chr1_2:68425502-68425521 | Msa0087470:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 68424389 | 68427765 | 68424389 | ID=Msa0087470;Name=Msa0087470 |
| chr1_2 | mRNA | 68424389 | 68427765 | 68424389 | ID=Msa0087470-mRNA-1;Parent=Msa0087470;Name=Msa0087470-mRNA-1;_AED=0.15;_eAED=0.15;_QI=180|1|1|1|1|1|3|281|490 |
| chr1_2 | exon | 68424389 | 68425113 | 68424389 | ID=Msa0087470-mRNA-1:exon:23334;Parent=Msa0087470-mRNA-1 |
| chr1_2 | exon | 68425335 | 68425574 | 68425335 | ID=Msa0087470-mRNA-1:exon:23335;Parent=Msa0087470-mRNA-1 |
| chr1_2 | exon | 68426797 | 68427765 | 68426797 | ID=Msa0087470-mRNA-1:exon:23336;Parent=Msa0087470-mRNA-1 |
| chr1_2 | five_prime_UTR | 68424389 | 68424568 | 68424389 | ID=Msa0087470-mRNA-1:five_prime_utr;Parent=Msa0087470-mRNA-1 |
| chr1_2 | CDS | 68424569 | 68425113 | 68424569 | ID=Msa0087470-mRNA-1:cds;Parent=Msa0087470-mRNA-1 |
| chr1_2 | CDS | 68425335 | 68425574 | 68425335 | ID=Msa0087470-mRNA-1:cds;Parent=Msa0087470-mRNA-1 |
| chr1_2 | CDS | 68426797 | 68427484 | 68426797 | ID=Msa0087470-mRNA-1:cds;Parent=Msa0087470-mRNA-1 |
| chr1_2 | three_prime_UTR | 68427485 | 68427765 | 68427485 | ID=Msa0087470-mRNA-1:three_prime_utr;Parent=Msa0087470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
