AlfalfaGEDB | Msa1048690

M. sativa cultivar zhongmu-4 / Msa1048690

KEGG: K02915
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF01199.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1048690	XP_003621181.1	100.000	120	0	0	1	120	1	120	4.04e-79	238

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1048690	sp\|P40590\|RL34_PEA	98.333	120	2	0	1	120	1	120	2.15e-80	234

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1048690	Q2HVS3	100.000	120	0	0	1	120	1	120	1.93e-79	238

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0022970	Msa1048690	0.806763	7.024682e-50	-8.615850e-47
Msa0045730	Msa1048690	0.824228	9.044973e-54	-8.615850e-47
Msa0116130	Msa1048690	0.830049	3.655069e-55	-8.615850e-47
Msa0619860	Msa1048690	0.814794	1.284726e-51	-8.615850e-47
Msa0623200	Msa1048690	0.832767	7.834509e-56	-8.615850e-47
Msa0633570	Msa1048690	0.816663	4.923136e-52	-8.615850e-47
Msa0666230	Msa1048690	0.810973	8.830323e-51	-8.615850e-47
Msa0705000	Msa1048690	0.802159	6.402017e-49	-8.615850e-47
Msa0705040	Msa1048690	0.802089	6.619474e-49	-8.615850e-47
Msa0706500	Msa1048690	0.825253	5.184983e-54	-8.615850e-47
Msa0712610	Msa1048690	0.835123	2.014986e-56	-8.615850e-47
Msa0729200	Msa1048690	0.827357	1.635611e-54	-8.615850e-47
Msa0769590	Msa1048690	0.826519	2.595358e-54	-8.615850e-47
Msa0785130	Msa1048690	0.821779	3.366996e-53	-8.615850e-47
Msa0806880	Msa1048690	0.816244	6.111251e-52	-8.615850e-47
Msa0138890	Msa1048690	0.802982	4.332365e-49	-8.615850e-47
Msa0192230	Msa1048690	0.818685	1.723130e-52	-8.615850e-47
Msa0218720	Msa1048690	0.803384	3.577546e-49	-8.615850e-47
Msa0218830	Msa1048690	0.855272	7.051301e-62	-8.615850e-47
Msa0219120	Msa1048690	0.820133	8.056235e-53	-8.615850e-47
Msa0221030	Msa1048690	0.839065	1.979571e-57	-8.615850e-47
Msa0224560	Msa1048690	0.817139	3.849230e-52	-8.615850e-47
Msa0230520	Msa1048690	0.808560	2.916432e-50	-8.615850e-47
Msa0382210	Msa1048690	0.805165	1.523106e-49	-8.615850e-47
Msa0443390	Msa1048690	0.812522	4.063474e-51	-8.615850e-47
Msa1021120	Msa1048690	0.800062	1.718481e-48	-8.615850e-47
Msa1048690	Msa1088490	0.801736	7.821120e-49	-8.615850e-47
Msa1048690	Msa1115620	0.853029	3.129572e-61	-8.615850e-47
Msa1048690	Msa1166870	0.827467	1.539780e-54	-8.615850e-47
Msa1048690	Msa1186980	0.801733	7.835097e-49	-8.615850e-47
Msa1048690	Msa1208020	0.800900	1.159937e-48	-8.615850e-47
Msa1048690	Msa1241190	0.800212	1.602011e-48	-8.615850e-47
Msa1048690	Msa1256770	0.810500	1.117925e-50	-8.615850e-47
Msa1048690	Msa1298050	0.814805	1.277790e-51	-8.615850e-47
Msa1048690	Msa1331710	0.811756	5.970310e-51	-8.615850e-47
Msa1048690	Msa1349570	0.839680	1.370912e-57	-8.615850e-47
Msa1048690	Msa1356790	0.827077	1.909592e-54	-8.615850e-47
Msa1048690	Msa1369190	0.841672	4.121687e-58	-8.615850e-47
Msa1048690	Msa1374240	0.805648	1.206021e-49	-8.615850e-47
Msa1048690	Msa1392590	0.803052	4.189323e-49	-8.615850e-47
Msa1048690	Msa1413500	0.814046	1.880314e-51	-8.615850e-47
Msa1048690	Msa1426370	0.842414	2.623634e-58	-8.615850e-47
Msa1048690	Msa1426490	0.842952	1.888215e-58	-8.615850e-47
Msa1048690	Msa1455950	0.810893	9.191265e-51	-8.615850e-47
Msa1048690	Msa1462860	0.801758	7.742383e-49	-8.615850e-47
Msa1048690	Msa1465260	0.814940	1.192391e-51	-8.615850e-47
Msa0245060	Msa1048690	0.803507	3.372519e-49	-8.615850e-47
Msa0262480	Msa1048690	0.805498	1.296585e-49	-8.615850e-47
Msa0300350	Msa1048690	0.825714	4.032502e-54	-8.615850e-47
Msa0306690	Msa1048690	0.805983	1.025567e-49	-8.615850e-47
Msa0348830	Msa1048690	0.825738	3.980140e-54	-8.615850e-47
Msa0483110	Msa1048690	0.815273	1.005987e-51	-8.615850e-47
Msa0534750	Msa1048690	0.810876	9.267762e-51	-8.615850e-47
Msa0593700	Msa1048690	0.812381	4.362347e-51	-8.615850e-47
Msa0945480	Msa1048690	0.859908	2.986212e-63	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1048690	MtrunA17_Chr7g0217171	100.000	120	0	0	1	120	1	120	3.72e-83	238
Msa1048690	MtrunA17_Chr8g0361721	99.160	119	1	0	1	119	1	119	2.16e-81	234
Msa1048690	MtrunA17_Chr5g0417101	96.667	120	4	0	1	120	1	120	2.26e-80	231
Msa1048690	MtrunA17_Chr7g0217651	75.510	49	12	0	1	49	1	49	2.07e-21	80.5
Msa1048690	MtrunA17_Chr8g0343321	74.545	55	13	1	66	119	66	120	9.06e-20	78.2

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1048690	AT1G26880.1	90.833	120	11	1	120	1	120	2.67e-75	219
Msa1048690	AT1G69620.1	91.597	119	10	1	119	1	119	1.03e-74	217
Msa1048690	AT3G28900.1	88.333	120	14	1	120	1	120	5.19e-73	213
Msa1048690	AT1G26880.2	91.304	92	8	1	92	1	92	7.25e-58	174

Find 38 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGAACCGCCGCACTGTTAAC+AGG	0.305052	7_2:-10487708	Msa1048690:CDS
TGGATCCTCTTTCCAGTAAC+AGG	0.314412	7_2:+10489090	None:intergenic
GGACCTAAGTGTCCTGTTAC+TGG	0.331250	7_2:-10489102	Msa1048690:CDS
CGCACTGTTAACAGGGCTTA+TGG	0.356563	7_2:-10487700	Msa1048690:CDS
ATGGAAATCCTCTACTGAAA+TGG	0.387347	7_2:-10487262	Msa1048690:three_prime_UTR
AACACGGTGCTGGTTGGATT+TGG	0.394257	7_2:+10489325	None:intergenic
CCTTTCCCTAACTGCTCCTC+CGG	0.445304	7_2:+10487666	None:intergenic
TTTCCATTTAAAATGTGCAT+TGG	0.456343	7_2:+10487278	None:intergenic
TTAACAGTGCGGCGGTTCCT+AGG	0.468395	7_2:+10487712	None:intergenic
CACCGTGTTGTTAAGACACC+TGG	0.500492	7_2:-10489311	Msa1048690:intron
TGAGCACAAATCTAAACAAA+AGG	0.501606	7_2:+10487426	None:intergenic
AATGGTGTTAATTATGAATG+TGG	0.505002	7_2:-10487388	Msa1048690:three_prime_UTR
TTTCCAGTAACAGGACACTT+AGG	0.509665	7_2:+10489099	None:intergenic
AATATGGGTAAGTTAAATGT+AGG	0.510112	7_2:+10487164	None:intergenic
TTTATCCGGAGGAGCAGTTA+GGG	0.512833	7_2:-10487671	Msa1048690:CDS
ACGGTGCTGGTTGGATTTGG+TGG	0.531901	7_2:+10489328	None:intergenic
AGTGTCCTGTTACTGGAAAG+AGG	0.543803	7_2:-10489095	Msa1048690:CDS
CTTAACAACACGGTGCTGGT+TGG	0.551447	7_2:+10489319	None:intergenic
AATAGAAACCATTTCAGTAG+AGG	0.556700	7_2:+10487254	None:intergenic
GTGTCTTAACAACACGGTGC+TGG	0.562799	7_2:+10489315	None:intergenic
GTTACTGGAAAGAGGATCCA+AGG	0.571456	7_2:-10489087	Msa1048690:CDS
ACAACTAAGAAGAGAGCTAG+TGG	0.577057	7_2:-10489123	Msa1048690:CDS
TGGCATAGCTGTGTCTCCTA+CGG	0.580308	7_2:+10489348	None:intergenic
GCTCTTCAACAAGGAAAGCA+CGG	0.587996	7_2:+10487550	None:intergenic
CCGGAGGAGCAGTTAGGGAA+AGG	0.595594	7_2:-10487666	Msa1048690:intron
CTAGACCTCTTGTATTCAGT+AGG	0.617053	7_2:+10487739	None:intergenic
TTACTGGAAAGAGGATCCAA+GGG	0.629653	7_2:-10489086	Msa1048690:CDS
TGAGACCTACTGAATACAAG+AGG	0.631121	7_2:-10487744	Msa1048690:CDS
ACAAGAGGTCTAGATTGCCT+AGG	0.636078	7_2:-10487729	Msa1048690:CDS
TATTCAGTAGGTCTCAAGTG+TGG	0.667813	7_2:+10487751	None:intergenic
AAGCCCTGTTAACAGTGCGG+CGG	0.691394	7_2:+10487704	None:intergenic
ACTGTTAACAGGGCTTATGG+AGG	0.693206	7_2:-10487697	Msa1048690:CDS
TACCAGGTGTCTTAACAACA+CGG	0.695634	7_2:+10489309	None:intergenic
AACAACAACAACAATCACCA+TGG	0.701306	7_2:-10489387	Msa1048690:exon
TTCAGAGACTCACATACCGT+AGG	0.721913	7_2:-10489364	Msa1048690:CDS
CATAAGCCCTGTTAACAGTG+CGG	0.730145	7_2:+10487701	None:intergenic
TACTGGAAAGAGGATCCAAG+GGG	0.738216	7_2:-10489085	Msa1048690:intron
GTATGTGAGTCTCTGAACCA+TGG	0.739024	7_2:+10489370	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTGATTTTTTCTTAAAAAT+TGG	-	chr7_2:10487372-10487391	Msa1048690:three_prime_UTR	10.0%
!!	AATTGAAAATTGAAAATATT+AGG	-	chr7_2:10487744-10487763	Msa1048690:CDS	10.0%
!!	ATTATAAAATCAATTATTTG+TGG	-	chr7_2:10487814-10487833	Msa1048690:intron	10.0%
!!	ATTTGAAAATTGAAAATATT+AGG	+	chr7_2:10487922-10487941	None:intergenic	10.0%
!!!	ACATTAAACAAAAAATTTTA+GGG	+	chr7_2:10488006-10488025	None:intergenic	10.0%
!!!	AACATTAAACAAAAAATTTT+AGG	+	chr7_2:10488007-10488026	None:intergenic	10.0%
!!!	TAAAATTTTTTGTTTAATGT+TGG	-	chr7_2:10488006-10488025	Msa1048690:intron	10.0%
!!!	AAAATTTTTTGTTTAATGTT+GGG	-	chr7_2:10488007-10488026	Msa1048690:intron	10.0%
!!!	TTAATTTCAAATTGATTTTA+TGG	-	chr7_2:10489238-10489257	Msa1048690:intron	10.0%
!!!	TTTGATTTTTTCTTAAAAAT+TGG	-	chr7_2:10487372-10487391	Msa1048690:three_prime_UTR	10.0%
!!	AATTGAAAATTGAAAATATT+AGG	-	chr7_2:10487744-10487763	Msa1048690:CDS	10.0%
!!	ATTATAAAATCAATTATTTG+TGG	-	chr7_2:10487814-10487833	Msa1048690:intron	10.0%
!!	ATTTGAAAATTGAAAATATT+AGG	+	chr7_2:10487922-10487941	None:intergenic	10.0%
!!!	ACATTAAACAAAAAATTTTA+GGG	+	chr7_2:10488006-10488025	None:intergenic	10.0%
!!!	AACATTAAACAAAAAATTTT+AGG	+	chr7_2:10488007-10488026	None:intergenic	10.0%
!!!	TAAAATTTTTTGTTTAATGT+TGG	-	chr7_2:10488006-10488025	Msa1048690:intron	10.0%
!!!	AAAATTTTTTGTTTAATGTT+GGG	-	chr7_2:10488007-10488026	Msa1048690:intron	10.0%
!!!	TTAATTTCAAATTGATTTTA+TGG	-	chr7_2:10489238-10489257	Msa1048690:intron	10.0%
!!!	TTTTGATTAATTTGTGAAAA+TGG	-	chr7_2:10487418-10487437	Msa1048690:three_prime_UTR	15.0%
!!!	TTTGATTAATTTGTGAAAAT+GGG	-	chr7_2:10487419-10487438	Msa1048690:three_prime_UTR	15.0%
!!	ATTAATAATCTGTTATACAT+AGG	-	chr7_2:10487569-10487588	Msa1048690:intron	15.0%
!!	TTTGCAATTATTAATGTTAA+TGG	-	chr7_2:10487779-10487798	Msa1048690:intron	15.0%
!!	TAACAAATCTTCAATAAAAA+TGG	+	chr7_2:10488336-10488355	None:intergenic	15.0%
!!!	TTTTGATTAATTTGTGAAAA+TGG	-	chr7_2:10487418-10487437	Msa1048690:three_prime_UTR	15.0%
!!!	TTTGATTAATTTGTGAAAAT+GGG	-	chr7_2:10487419-10487438	Msa1048690:three_prime_UTR	15.0%
!!	ATTAATAATCTGTTATACAT+AGG	-	chr7_2:10487569-10487588	Msa1048690:intron	15.0%
!!	TTTGCAATTATTAATGTTAA+TGG	-	chr7_2:10487779-10487798	Msa1048690:intron	15.0%
!!	TAACAAATCTTCAATAAAAA+TGG	+	chr7_2:10488336-10488355	None:intergenic	15.0%
!!!	AAATCAATTACTGTGTTTTT+TGG	-	chr7_2:10488085-10488104	Msa1048690:intron	20.0%
!!!	AATCAATTACTGTGTTTTTT+GGG	-	chr7_2:10488086-10488105	Msa1048690:intron	20.0%
!!!	TTAATACTACAATTTTGTGA+GGG	+	chr7_2:10488496-10488515	None:intergenic	20.0%
!!!	TTTAATACTACAATTTTGTG+AGG	+	chr7_2:10488497-10488516	None:intergenic	20.0%
!!	GAATGAAAATTAAAAGTAGT+AGG	+	chr7_2:10488708-10488727	None:intergenic	20.0%
!!!	AGTTAAGCTATTTTTATCAA+TGG	-	chr7_2:10489132-10489151	Msa1048690:CDS	20.0%
!!!	AAATCAATTACTGTGTTTTT+TGG	-	chr7_2:10488085-10488104	Msa1048690:intron	20.0%
!!!	AATCAATTACTGTGTTTTTT+GGG	-	chr7_2:10488086-10488105	Msa1048690:intron	20.0%
!!!	TTAATACTACAATTTTGTGA+GGG	+	chr7_2:10488496-10488515	None:intergenic	20.0%
!!!	TTTAATACTACAATTTTGTG+AGG	+	chr7_2:10488497-10488516	None:intergenic	20.0%
!!	GAATGAAAATTAAAAGTAGT+AGG	+	chr7_2:10488708-10488727	None:intergenic	20.0%
!!!	AGTTAAGCTATTTTTATCAA+TGG	-	chr7_2:10489132-10489151	Msa1048690:CDS	20.0%
!!!	TTAGCTTTAACTTCATTGTT+GGG	-	chr7_2:10487872-10487891	Msa1048690:intron	25.0%
!	TTTAATGTTGGGTTTATTGT+AGG	-	chr7_2:10488018-10488037	Msa1048690:intron	25.0%
!	AAACTATCTCTTCTGTAATA+GGG	+	chr7_2:10488194-10488213	None:intergenic	25.0%
!	GACTTAACTAAAAAAACAGA+CGG	+	chr7_2:10488314-10488333	None:intergenic	25.0%
!	ATCTATCATGTTTCAAACAT+AGG	+	chr7_2:10488360-10488379	None:intergenic	25.0%
!	AGATACCCTTTCTAAATTAT+TGG	-	chr7_2:10488516-10488535	Msa1048690:intron	25.0%
!	AGTCACCAATAATTTAGAAA+GGG	+	chr7_2:10488524-10488543	None:intergenic	25.0%
!	GCATCATTGAAATTATACAA+TGG	+	chr7_2:10488609-10488628	None:intergenic	25.0%
!	GAAAATTAAAAGTAGTAGGT+AGG	+	chr7_2:10488704-10488723	None:intergenic	25.0%
!!	AATGGTGTTAATTATGAATG+TGG	-	chr7_2:10489212-10489231	Msa1048690:intron	25.0%
!!	TTTCCATTTAAAATGTGCAT+TGG	+	chr7_2:10489325-10489344	None:intergenic	25.0%
!!!	TTAGCTTTAACTTCATTGTT+GGG	-	chr7_2:10487872-10487891	Msa1048690:intron	25.0%
!	TTTAATGTTGGGTTTATTGT+AGG	-	chr7_2:10488018-10488037	Msa1048690:intron	25.0%
!	AAACTATCTCTTCTGTAATA+GGG	+	chr7_2:10488194-10488213	None:intergenic	25.0%
!	GACTTAACTAAAAAAACAGA+CGG	+	chr7_2:10488314-10488333	None:intergenic	25.0%
!	ATCTATCATGTTTCAAACAT+AGG	+	chr7_2:10488360-10488379	None:intergenic	25.0%
!	AGATACCCTTTCTAAATTAT+TGG	-	chr7_2:10488516-10488535	Msa1048690:intron	25.0%
!	AGTCACCAATAATTTAGAAA+GGG	+	chr7_2:10488524-10488543	None:intergenic	25.0%
!	GCATCATTGAAATTATACAA+TGG	+	chr7_2:10488609-10488628	None:intergenic	25.0%
!	GAAAATTAAAAGTAGTAGGT+AGG	+	chr7_2:10488704-10488723	None:intergenic	25.0%
!!	AATGGTGTTAATTATGAATG+TGG	-	chr7_2:10489212-10489231	Msa1048690:intron	25.0%
!!	TTTCCATTTAAAATGTGCAT+TGG	+	chr7_2:10489325-10489344	None:intergenic	25.0%
	AACCCTAGAAAAATGAAAGA+GGG	+	chr7_2:10487183-10487202	None:intergenic	30.0%
	AAACCCTAGAAAAATGAAAG+AGG	+	chr7_2:10487184-10487203	None:intergenic	30.0%
!!!	AAATGGGTTTGTGTTGTTTT+AGG	-	chr7_2:10487435-10487454	Msa1048690:three_prime_UTR	30.0%
	TGTTGTGAAGAAATGTAGAT+TGG	-	chr7_2:10487635-10487654	Msa1048690:intron	30.0%
	GAAGAAATGTAGATTGGTAT+AGG	-	chr7_2:10487641-10487660	Msa1048690:intron	30.0%
!!	GGTATAGGAGTATTTATGAT+AGG	-	chr7_2:10487656-10487675	Msa1048690:intron	30.0%
!!	CTTAGCTTTAACTTCATTGT+TGG	-	chr7_2:10487871-10487890	Msa1048690:intron	30.0%
	TTGAATTCGTCTATGTTAGT+TGG	+	chr7_2:10487952-10487971	None:intergenic	30.0%
	CAAACTATCTCTTCTGTAAT+AGG	+	chr7_2:10488195-10488214	None:intergenic	30.0%
	ACTAATTCACTTCACAAACA+CGG	+	chr7_2:10488286-10488305	None:intergenic	30.0%
!	AAAATTGATGATAGCGTCAA+AGG	+	chr7_2:10488406-10488425	None:intergenic	30.0%
	CAGTCACCAATAATTTAGAA+AGG	+	chr7_2:10488525-10488544	None:intergenic	30.0%
	TTATCATGTTTGTTCTGTTC+TGG	-	chr7_2:10488810-10488829	Msa1048690:intron	30.0%
!!!	CTATTTTTTGCTCTTCAACA+AGG	+	chr7_2:10489062-10489081	None:intergenic	30.0%
!!!	CTTGCTTTTCTTTTGTTTTC+TGG	+	chr7_2:10489104-10489123	None:intergenic	30.0%
	TGAGCACAAATCTAAACAAA+AGG	+	chr7_2:10489177-10489196	None:intergenic	30.0%
!!!	TCAAGAGTTTTGACTTTGAA+TGG	-	chr7_2:10489194-10489213	Msa1048690:intron	30.0%
!	GTTCCAATGCACATTTTAAA+TGG	-	chr7_2:10489319-10489338	Msa1048690:CDS	30.0%
	AATAGAAACCATTTCAGTAG+AGG	+	chr7_2:10489349-10489368	None:intergenic	30.0%
	AACCCTAGAAAAATGAAAGA+GGG	+	chr7_2:10487183-10487202	None:intergenic	30.0%
	AAACCCTAGAAAAATGAAAG+AGG	+	chr7_2:10487184-10487203	None:intergenic	30.0%
!!!	AAATGGGTTTGTGTTGTTTT+AGG	-	chr7_2:10487435-10487454	Msa1048690:three_prime_UTR	30.0%
	TGTTGTGAAGAAATGTAGAT+TGG	-	chr7_2:10487635-10487654	Msa1048690:intron	30.0%
	GAAGAAATGTAGATTGGTAT+AGG	-	chr7_2:10487641-10487660	Msa1048690:intron	30.0%
!!	GGTATAGGAGTATTTATGAT+AGG	-	chr7_2:10487656-10487675	Msa1048690:intron	30.0%
!!	CTTAGCTTTAACTTCATTGT+TGG	-	chr7_2:10487871-10487890	Msa1048690:intron	30.0%
	TTGAATTCGTCTATGTTAGT+TGG	+	chr7_2:10487952-10487971	None:intergenic	30.0%
	CAAACTATCTCTTCTGTAAT+AGG	+	chr7_2:10488195-10488214	None:intergenic	30.0%
	ACTAATTCACTTCACAAACA+CGG	+	chr7_2:10488286-10488305	None:intergenic	30.0%
!	AAAATTGATGATAGCGTCAA+AGG	+	chr7_2:10488406-10488425	None:intergenic	30.0%
	CAGTCACCAATAATTTAGAA+AGG	+	chr7_2:10488525-10488544	None:intergenic	30.0%
	TTATCATGTTTGTTCTGTTC+TGG	-	chr7_2:10488810-10488829	Msa1048690:intron	30.0%
!!!	CTATTTTTTGCTCTTCAACA+AGG	+	chr7_2:10489062-10489081	None:intergenic	30.0%
!!!	CTTGCTTTTCTTTTGTTTTC+TGG	+	chr7_2:10489104-10489123	None:intergenic	30.0%
	TGAGCACAAATCTAAACAAA+AGG	+	chr7_2:10489177-10489196	None:intergenic	30.0%
!!!	TCAAGAGTTTTGACTTTGAA+TGG	-	chr7_2:10489194-10489213	Msa1048690:intron	30.0%
!	GTTCCAATGCACATTTTAAA+TGG	-	chr7_2:10489319-10489338	Msa1048690:CDS	30.0%
	AATAGAAACCATTTCAGTAG+AGG	+	chr7_2:10489349-10489368	None:intergenic	30.0%
	ACCCTAGAAAAATGAAAGAG+GGG	+	chr7_2:10487182-10487201	None:intergenic	35.0%
	AACAACAACAACAATCACCA+TGG	-	chr7_2:10487213-10487232	Msa1048690:three_prime_UTR	35.0%
	TGACAAAGAAGAACATTACC+AGG	+	chr7_2:10487310-10487329	None:intergenic	35.0%
!!!	TGTTGTTTTAGGTGGAAAGT+TGG	-	chr7_2:10487446-10487465	Msa1048690:three_prime_UTR	35.0%
	TCATATAGATACATACCCCT+TGG	+	chr7_2:10487533-10487552	None:intergenic	35.0%
!	GGACTTGTGTTATTCACTAA+TGG	-	chr7_2:10487677-10487696	Msa1048690:CDS	35.0%
	TTGTCTGTGTCATGTAAAAC+AGG	-	chr7_2:10487711-10487730	Msa1048690:CDS	35.0%
	GTTTATTGAGCGAATGTTCT+TGG	-	chr7_2:10487836-10487855	Msa1048690:intron	35.0%
!!!	TGTGTTTTTTGGGTTTACTG+TGG	-	chr7_2:10488096-10488115	Msa1048690:intron	35.0%
!!!	GTGTTTTTTGGGTTTACTGT+GGG	-	chr7_2:10488097-10488116	Msa1048690:intron	35.0%
!!!	TGTTTTTTGGGTTTACTGTG+GGG	-	chr7_2:10488098-10488117	Msa1048690:intron	35.0%
	CAACACAATCTTCAATCAGA+TGG	+	chr7_2:10488164-10488183	None:intergenic	35.0%
!	CAATTTTGTGAGGGACAATA+AGG	+	chr7_2:10488487-10488506	None:intergenic	35.0%
	AAACTTAGATGCTGTGTGAT+AGG	+	chr7_2:10488583-10488602	None:intergenic	35.0%
	GATGCAATTCTACAACATTG+TGG	-	chr7_2:10488624-10488643	Msa1048690:intron	35.0%
	CAATTCTACAACATTGTGGA+AGG	-	chr7_2:10488628-10488647	Msa1048690:intron	35.0%
!!	GAAAGTGTCAAGATTATGCA+GGG	+	chr7_2:10488682-10488701	None:intergenic	35.0%
	ATGGAAATCCTCTACTGAAA+TGG	-	chr7_2:10489338-10489357	Msa1048690:CDS	35.0%
	ACCCTAGAAAAATGAAAGAG+GGG	+	chr7_2:10487182-10487201	None:intergenic	35.0%
	AACAACAACAACAATCACCA+TGG	-	chr7_2:10487213-10487232	Msa1048690:three_prime_UTR	35.0%
	TGACAAAGAAGAACATTACC+AGG	+	chr7_2:10487310-10487329	None:intergenic	35.0%
!!!	TGTTGTTTTAGGTGGAAAGT+TGG	-	chr7_2:10487446-10487465	Msa1048690:three_prime_UTR	35.0%
	TCATATAGATACATACCCCT+TGG	+	chr7_2:10487533-10487552	None:intergenic	35.0%
!	GGACTTGTGTTATTCACTAA+TGG	-	chr7_2:10487677-10487696	Msa1048690:CDS	35.0%
	TTGTCTGTGTCATGTAAAAC+AGG	-	chr7_2:10487711-10487730	Msa1048690:CDS	35.0%
	GTTTATTGAGCGAATGTTCT+TGG	-	chr7_2:10487836-10487855	Msa1048690:intron	35.0%
!!!	TGTGTTTTTTGGGTTTACTG+TGG	-	chr7_2:10488096-10488115	Msa1048690:intron	35.0%
!!!	GTGTTTTTTGGGTTTACTGT+GGG	-	chr7_2:10488097-10488116	Msa1048690:intron	35.0%
!!!	TGTTTTTTGGGTTTACTGTG+GGG	-	chr7_2:10488098-10488117	Msa1048690:intron	35.0%
	CAACACAATCTTCAATCAGA+TGG	+	chr7_2:10488164-10488183	None:intergenic	35.0%
!	CAATTTTGTGAGGGACAATA+AGG	+	chr7_2:10488487-10488506	None:intergenic	35.0%
	AAACTTAGATGCTGTGTGAT+AGG	+	chr7_2:10488583-10488602	None:intergenic	35.0%
	GATGCAATTCTACAACATTG+TGG	-	chr7_2:10488624-10488643	Msa1048690:intron	35.0%
	CAATTCTACAACATTGTGGA+AGG	-	chr7_2:10488628-10488647	Msa1048690:intron	35.0%
!!	GAAAGTGTCAAGATTATGCA+GGG	+	chr7_2:10488682-10488701	None:intergenic	35.0%
	ATGGAAATCCTCTACTGAAA+TGG	-	chr7_2:10489338-10489357	Msa1048690:CDS	35.0%
!!	GCCCCTCTTTCATTTTTCTA+GGG	-	chr7_2:10487178-10487197	Msa1048690:three_prime_UTR	40.0%
	TACCAGGTGTCTTAACAACA+CGG	+	chr7_2:10487294-10487313	None:intergenic	40.0%
!!!	TGGGTTTGTGTTGTTTTAGG+TGG	-	chr7_2:10487438-10487457	Msa1048690:three_prime_UTR	40.0%
	ACAACTAAGAAGAGAGCTAG+TGG	-	chr7_2:10487477-10487496	Msa1048690:exon	40.0%
	TTTCCAGTAACAGGACACTT+AGG	+	chr7_2:10487504-10487523	None:intergenic	40.0%
	TTACTGGAAAGAGGATCCAA+GGG	-	chr7_2:10487514-10487533	Msa1048690:CDS	40.0%
	ATAGCGTCAAAGGTCATAGT+TGG	+	chr7_2:10488396-10488415	None:intergenic	40.0%
	TTTGTGAGGGACAATAAGGA+CGG	+	chr7_2:10488483-10488502	None:intergenic	40.0%
!!	GGAAAGTGTCAAGATTATGC+AGG	+	chr7_2:10488683-10488702	None:intergenic	40.0%
!!!	TCATTGCTTTTTCTCCCTGA+TGG	-	chr7_2:10488735-10488754	Msa1048690:intron	40.0%
	TATTCAGTAGGTCTCAAGTG+TGG	+	chr7_2:10488852-10488871	None:intergenic	40.0%
	TGAGACCTACTGAATACAAG+AGG	-	chr7_2:10488856-10488875	Msa1048690:intron	40.0%
	CTAGACCTCTTGTATTCAGT+AGG	+	chr7_2:10488864-10488883	None:intergenic	40.0%
!!!	GCTTATGGAGGTGTTTTATC+CGG	-	chr7_2:10488915-10488934	Msa1048690:intron	40.0%
	ACGCTATTCAATCTTTGTGC+AGG	-	chr7_2:10489022-10489041	Msa1048690:intron	40.0%
!!	GCCCCTCTTTCATTTTTCTA+GGG	-	chr7_2:10487178-10487197	Msa1048690:three_prime_UTR	40.0%
	TACCAGGTGTCTTAACAACA+CGG	+	chr7_2:10487294-10487313	None:intergenic	40.0%
!!!	TGGGTTTGTGTTGTTTTAGG+TGG	-	chr7_2:10487438-10487457	Msa1048690:three_prime_UTR	40.0%
	ACAACTAAGAAGAGAGCTAG+TGG	-	chr7_2:10487477-10487496	Msa1048690:exon	40.0%
	TTTCCAGTAACAGGACACTT+AGG	+	chr7_2:10487504-10487523	None:intergenic	40.0%
	TTACTGGAAAGAGGATCCAA+GGG	-	chr7_2:10487514-10487533	Msa1048690:CDS	40.0%
	ATAGCGTCAAAGGTCATAGT+TGG	+	chr7_2:10488396-10488415	None:intergenic	40.0%
	TTTGTGAGGGACAATAAGGA+CGG	+	chr7_2:10488483-10488502	None:intergenic	40.0%
!!	GGAAAGTGTCAAGATTATGC+AGG	+	chr7_2:10488683-10488702	None:intergenic	40.0%
!!!	TCATTGCTTTTTCTCCCTGA+TGG	-	chr7_2:10488735-10488754	Msa1048690:intron	40.0%
	TATTCAGTAGGTCTCAAGTG+TGG	+	chr7_2:10488852-10488871	None:intergenic	40.0%
	TGAGACCTACTGAATACAAG+AGG	-	chr7_2:10488856-10488875	Msa1048690:intron	40.0%
	CTAGACCTCTTGTATTCAGT+AGG	+	chr7_2:10488864-10488883	None:intergenic	40.0%
!!!	GCTTATGGAGGTGTTTTATC+CGG	-	chr7_2:10488915-10488934	Msa1048690:intron	40.0%
	ACGCTATTCAATCTTTGTGC+AGG	-	chr7_2:10489022-10489041	Msa1048690:intron	40.0%
!!	CGCCCCTCTTTCATTTTTCT+AGG	-	chr7_2:10487177-10487196	Msa1048690:three_prime_UTR	45.0%
	GTATGTGAGTCTCTGAACCA+TGG	+	chr7_2:10487233-10487252	None:intergenic	45.0%
	TTCAGAGACTCACATACCGT+AGG	-	chr7_2:10487236-10487255	Msa1048690:three_prime_UTR	45.0%
	AGTGTCCTGTTACTGGAAAG+AGG	-	chr7_2:10487505-10487524	Msa1048690:CDS	45.0%
	TGGATCCTCTTTCCAGTAAC+AGG	+	chr7_2:10487513-10487532	None:intergenic	45.0%
	GTTACTGGAAAGAGGATCCA+AGG	-	chr7_2:10487513-10487532	Msa1048690:CDS	45.0%
	TACTGGAAAGAGGATCCAAG+GGG	-	chr7_2:10487515-10487534	Msa1048690:CDS	45.0%
	TTGAGCGAATGTTCTTGGAG+TGG	-	chr7_2:10487841-10487860	Msa1048690:intron	45.0%
	TGAGCGAATGTTCTTGGAGT+GGG	-	chr7_2:10487842-10487861	Msa1048690:intron	45.0%
	AGTGCATGTCATGACCATCA+GGG	+	chr7_2:10488752-10488771	None:intergenic	45.0%
	TAGTGCATGTCATGACCATC+AGG	+	chr7_2:10488753-10488772	None:intergenic	45.0%
	ACAAGAGGTCTAGATTGCCT+AGG	-	chr7_2:10488871-10488890	Msa1048690:intron	45.0%
	CATAAGCCCTGTTAACAGTG+CGG	+	chr7_2:10488902-10488921	None:intergenic	45.0%
	ACTGTTAACAGGGCTTATGG+AGG	-	chr7_2:10488903-10488922	Msa1048690:intron	45.0%
!!!	TATGGAGGTGTTTTATCCGG+AGG	-	chr7_2:10488918-10488937	Msa1048690:intron	45.0%
!	TTTTATCCGGAGGAGCAGTT+AGG	-	chr7_2:10488928-10488947	Msa1048690:intron	45.0%
	TTTATCCGGAGGAGCAGTTA+GGG	-	chr7_2:10488929-10488948	Msa1048690:intron	45.0%
	GCTCTTCAACAAGGAAAGCA+CGG	+	chr7_2:10489053-10489072	None:intergenic	45.0%
!!	CGCCCCTCTTTCATTTTTCT+AGG	-	chr7_2:10487177-10487196	Msa1048690:three_prime_UTR	45.0%
	GTATGTGAGTCTCTGAACCA+TGG	+	chr7_2:10487233-10487252	None:intergenic	45.0%
	TTCAGAGACTCACATACCGT+AGG	-	chr7_2:10487236-10487255	Msa1048690:three_prime_UTR	45.0%
	AGTGTCCTGTTACTGGAAAG+AGG	-	chr7_2:10487505-10487524	Msa1048690:CDS	45.0%
	TGGATCCTCTTTCCAGTAAC+AGG	+	chr7_2:10487513-10487532	None:intergenic	45.0%
	GTTACTGGAAAGAGGATCCA+AGG	-	chr7_2:10487513-10487532	Msa1048690:CDS	45.0%
	TACTGGAAAGAGGATCCAAG+GGG	-	chr7_2:10487515-10487534	Msa1048690:CDS	45.0%
	TTGAGCGAATGTTCTTGGAG+TGG	-	chr7_2:10487841-10487860	Msa1048690:intron	45.0%
	TGAGCGAATGTTCTTGGAGT+GGG	-	chr7_2:10487842-10487861	Msa1048690:intron	45.0%
	AGTGCATGTCATGACCATCA+GGG	+	chr7_2:10488752-10488771	None:intergenic	45.0%
	TAGTGCATGTCATGACCATC+AGG	+	chr7_2:10488753-10488772	None:intergenic	45.0%
	ACAAGAGGTCTAGATTGCCT+AGG	-	chr7_2:10488871-10488890	Msa1048690:intron	45.0%
	CATAAGCCCTGTTAACAGTG+CGG	+	chr7_2:10488902-10488921	None:intergenic	45.0%
	ACTGTTAACAGGGCTTATGG+AGG	-	chr7_2:10488903-10488922	Msa1048690:intron	45.0%
!!!	TATGGAGGTGTTTTATCCGG+AGG	-	chr7_2:10488918-10488937	Msa1048690:intron	45.0%
!	TTTTATCCGGAGGAGCAGTT+AGG	-	chr7_2:10488928-10488947	Msa1048690:intron	45.0%
	TTTATCCGGAGGAGCAGTTA+GGG	-	chr7_2:10488929-10488948	Msa1048690:intron	45.0%
	GCTCTTCAACAAGGAAAGCA+CGG	+	chr7_2:10489053-10489072	None:intergenic	45.0%
	TGGCATAGCTGTGTCTCCTA+CGG	+	chr7_2:10487255-10487274	None:intergenic	50.0%
!!	AACACGGTGCTGGTTGGATT+TGG	+	chr7_2:10487278-10487297	None:intergenic	50.0%
!!	CTTAACAACACGGTGCTGGT+TGG	+	chr7_2:10487284-10487303	None:intergenic	50.0%
	GTGTCTTAACAACACGGTGC+TGG	+	chr7_2:10487288-10487307	None:intergenic	50.0%
!	CACCGTGTTGTTAAGACACC+TGG	-	chr7_2:10487289-10487308	Msa1048690:three_prime_UTR	50.0%
	GGACCTAAGTGTCCTGTTAC+TGG	-	chr7_2:10487498-10487517	Msa1048690:CDS	50.0%
	GTCTCAAGTGTGGAATCTGC+AGG	+	chr7_2:10488842-10488861	None:intergenic	50.0%
	CGCACTGTTAACAGGGCTTA+TGG	-	chr7_2:10488900-10488919	Msa1048690:intron	50.0%
	TGGCATAGCTGTGTCTCCTA+CGG	+	chr7_2:10487255-10487274	None:intergenic	50.0%
!!	AACACGGTGCTGGTTGGATT+TGG	+	chr7_2:10487278-10487297	None:intergenic	50.0%
!!	CTTAACAACACGGTGCTGGT+TGG	+	chr7_2:10487284-10487303	None:intergenic	50.0%
	GTGTCTTAACAACACGGTGC+TGG	+	chr7_2:10487288-10487307	None:intergenic	50.0%
!	CACCGTGTTGTTAAGACACC+TGG	-	chr7_2:10487289-10487308	Msa1048690:three_prime_UTR	50.0%
	GGACCTAAGTGTCCTGTTAC+TGG	-	chr7_2:10487498-10487517	Msa1048690:CDS	50.0%
	GTCTCAAGTGTGGAATCTGC+AGG	+	chr7_2:10488842-10488861	None:intergenic	50.0%
	CGCACTGTTAACAGGGCTTA+TGG	-	chr7_2:10488900-10488919	Msa1048690:intron	50.0%
!!	ACGGTGCTGGTTGGATTTGG+TGG	+	chr7_2:10487275-10487294	None:intergenic	55.0%
	TTAACAGTGCGGCGGTTCCT+AGG	+	chr7_2:10488891-10488910	None:intergenic	55.0%
	GAACCGCCGCACTGTTAACA+GGG	-	chr7_2:10488893-10488912	Msa1048690:intron	55.0%
	AAGCCCTGTTAACAGTGCGG+CGG	+	chr7_2:10488899-10488918	None:intergenic	55.0%
	CCTTTCCCTAACTGCTCCTC+CGG	+	chr7_2:10488937-10488956	None:intergenic	55.0%
!	GAAAGAGGGGCGTGCTGTAA+GGG	+	chr7_2:10487169-10487188	None:intergenic	55.0%
!	TGAAAGAGGGGCGTGCTGTA+AGG	+	chr7_2:10487170-10487189	None:intergenic	55.0%
!!	ACGGTGCTGGTTGGATTTGG+TGG	+	chr7_2:10487275-10487294	None:intergenic	55.0%
	TTAACAGTGCGGCGGTTCCT+AGG	+	chr7_2:10488891-10488910	None:intergenic	55.0%
	GAACCGCCGCACTGTTAACA+GGG	-	chr7_2:10488893-10488912	Msa1048690:intron	55.0%
	AAGCCCTGTTAACAGTGCGG+CGG	+	chr7_2:10488899-10488918	None:intergenic	55.0%
	CCTTTCCCTAACTGCTCCTC+CGG	+	chr7_2:10488937-10488956	None:intergenic	55.0%
	GGAACCGCCGCACTGTTAAC+AGG	-	chr7_2:10488892-10488911	Msa1048690:intron	60.0%
	CCGGAGGAGCAGTTAGGGAA+AGG	-	chr7_2:10488934-10488953	Msa1048690:intron	60.0%
	GGAACCGCCGCACTGTTAAC+AGG	-	chr7_2:10488892-10488911	Msa1048690:intron	60.0%
	CCGGAGGAGCAGTTAGGGAA+AGG	-	chr7_2:10488934-10488953	Msa1048690:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	10487169	10489453	10487169	ID=Msa1048690;Name=Msa1048690
chr7_2	mRNA	10487169	10489453	10487169	ID=Msa1048690-mRNA-1;Parent=Msa1048690;Name=Msa1048690-mRNA-1;_AED=0.03;_eAED=0.03;_QI=63\|1\|1\|1\|1\|1\|4\|316\|120
chr7_2	exon	10487169	10487578	10487169	ID=Msa1048690-mRNA-1:exon:2776;Parent=Msa1048690-mRNA-1
chr7_2	exon	10487667	10487776	10487667	ID=Msa1048690-mRNA-1:exon:2775;Parent=Msa1048690-mRNA-1
chr7_2	exon	10489086	10489165	10489086	ID=Msa1048690-mRNA-1:exon:2774;Parent=Msa1048690-mRNA-1
chr7_2	exon	10489312	10489453	10489312	ID=Msa1048690-mRNA-1:exon:2773;Parent=Msa1048690-mRNA-1
chr7_2	five_prime_UTR	10489391	10489453	10489391	ID=Msa1048690-mRNA-1:five_prime_utr;Parent=Msa1048690-mRNA-1
chr7_2	CDS	10489312	10489390	10489312	ID=Msa1048690-mRNA-1:cds;Parent=Msa1048690-mRNA-1
chr7_2	CDS	10489086	10489165	10489086	ID=Msa1048690-mRNA-1:cds;Parent=Msa1048690-mRNA-1
chr7_2	CDS	10487667	10487776	10487667	ID=Msa1048690-mRNA-1:cds;Parent=Msa1048690-mRNA-1
chr7_2	CDS	10487485	10487578	10487485	ID=Msa1048690-mRNA-1:cds;Parent=Msa1048690-mRNA-1
chr7_2	three_prime_UTR	10487169	10487484	10487169	ID=Msa1048690-mRNA-1:three_prime_utr;Parent=Msa1048690-mRNA-1

Gene Sequence	>Msa1048690 ATGGTTCAGAGACTCACATACCGTAGGAGACACAGCTATGCCACCAAATCCAACCAGCACCGTGTTGTTAAGACACCTGGTGGAAAGTTGGTTTATCAGACAACTAAGAAGAGAGCTAGTGGACCTAAGTGTCCTGTTACTGGAAAGAGGATCCAAGGGATTCCACACTTGAGACCTACTGAATACAAGAGGTCTAGATTGCCTAGGAACCGCCGCACTGTTAACAGGGCTTATGGAGGTGTTTTATCCGGAGGAGCAGTTAGGGAAAGGATTATCCGTGCTTTCCTTGTTGAAGAGCAAAAAATAGTCAAGAAAGTTTTGAAGATCCAGAAAACAAAAGAAAAGCAAGCAGCTAAGAGTTAA
Protein sequence	>Msa1048690 MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKS*