AlfalfaGEDB | Msa1048690

M. sativa cultivar zhongmu-4 / Msa1048690

KEGG: K02915
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF01199.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1048690	XP_003621181.1	100.000	120	0	0	1	120	1	120	4.04e-79	238

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1048690	sp\|P40590\|RL34_PEA	98.333	120	2	0	1	120	1	120	2.15e-80	234

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1048690	Q2HVS3	100.000	120	0	0	1	120	1	120	1.93e-79	238

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0022970	Msa1048690	0.806763	7.024682e-50	-8.615850e-47
Msa0045730	Msa1048690	0.824228	9.044973e-54	-8.615850e-47
Msa0116130	Msa1048690	0.830049	3.655069e-55	-8.615850e-47
Msa0138890	Msa1048690	0.802982	4.332365e-49	-8.615850e-47
Msa0192230	Msa1048690	0.818685	1.723130e-52	-8.615850e-47
Msa0218720	Msa1048690	0.803384	3.577546e-49	-8.615850e-47
Msa0218830	Msa1048690	0.855272	7.051301e-62	-8.615850e-47
Msa0219120	Msa1048690	0.820133	8.056235e-53	-8.615850e-47
Msa0221030	Msa1048690	0.839065	1.979571e-57	-8.615850e-47
Msa0224560	Msa1048690	0.817139	3.849230e-52	-8.615850e-47

Showing 1 to 10 of 55 entries

Previous1 2 3 4 5 6Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1048690	MtrunA17_Chr7g0217171	100.000	120	0	0	1	120	1	120	3.72e-83	238
Msa1048690	MtrunA17_Chr8g0361721	99.160	119	1	0	1	119	1	119	2.16e-81	234
Msa1048690	MtrunA17_Chr5g0417101	96.667	120	4	0	1	120	1	120	2.26e-80	231
Msa1048690	MtrunA17_Chr7g0217651	75.510	49	12	0	1	49	1	49	2.07e-21	80.5
Msa1048690	MtrunA17_Chr8g0343321	74.545	55	13	1	66	119	66	120	9.06e-20	78.2

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1048690	AT1G26880.1	90.833	120	11	1	120	1	120	2.67e-75	219
Msa1048690	AT1G69620.1	91.597	119	10	1	119	1	119	1.03e-74	217
Msa1048690	AT3G28900.1	88.333	120	14	1	120	1	120	5.19e-73	213
Msa1048690	AT1G26880.2	91.304	92	8	1	92	1	92	7.25e-58	174

Showing 1 to 4 of 4 entries

Previous1Next

Find 38 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACAACAACAATCACCA+TGG	0.701306	7_2:-10489387	Msa1048690:exon
AACACGGTGCTGGTTGGATT+TGG	0.394257	7_2:+10489325	None:intergenic
AAGCCCTGTTAACAGTGCGG+CGG	0.691394	7_2:+10487704	None:intergenic
AATAGAAACCATTTCAGTAG+AGG	0.556700	7_2:+10487254	None:intergenic
AATATGGGTAAGTTAAATGT+AGG	0.510112	7_2:+10487164	None:intergenic
AATGGTGTTAATTATGAATG+TGG	0.505002	7_2:-10487388	Msa1048690:three_prime_UTR
ACAACTAAGAAGAGAGCTAG+TGG	0.577057	7_2:-10489123	Msa1048690:CDS
ACAAGAGGTCTAGATTGCCT+AGG	0.636078	7_2:-10487729	Msa1048690:CDS
ACGGTGCTGGTTGGATTTGG+TGG	0.531901	7_2:+10489328	None:intergenic
ACTGTTAACAGGGCTTATGG+AGG	0.693206	7_2:-10487697	Msa1048690:CDS

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACCCTAGAAAAATGAAAGA+GGG	+	chr7_2:10487183-10487202	None:intergenic	30.0%
AAACCCTAGAAAAATGAAAG+AGG	+	chr7_2:10487184-10487203	None:intergenic	30.0%
TGTTGTGAAGAAATGTAGAT+TGG	-	chr7_2:10487635-10487654	Msa1048690:intron	30.0%
GAAGAAATGTAGATTGGTAT+AGG	-	chr7_2:10487641-10487660	Msa1048690:intron	30.0%
TTGAATTCGTCTATGTTAGT+TGG	+	chr7_2:10487952-10487971	None:intergenic	30.0%
CAAACTATCTCTTCTGTAAT+AGG	+	chr7_2:10488195-10488214	None:intergenic	30.0%
ACTAATTCACTTCACAAACA+CGG	+	chr7_2:10488286-10488305	None:intergenic	30.0%
CAGTCACCAATAATTTAGAA+AGG	+	chr7_2:10488525-10488544	None:intergenic	30.0%
TTATCATGTTTGTTCTGTTC+TGG	-	chr7_2:10488810-10488829	Msa1048690:intron	30.0%
TGAGCACAAATCTAAACAAA+AGG	+	chr7_2:10489177-10489196	None:intergenic	30.0%

Showing 1 to 10 of 234 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	10487169	10489453	10487169	ID=Msa1048690;Name=Msa1048690
chr7_2	mRNA	10487169	10489453	10487169	ID=Msa1048690-mRNA-1;Parent=Msa1048690;Name=Msa1048690-mRNA-1;_AED=0.03;_eAED=0.03;_QI=63\|1\|1\|1\|1\|1\|4\|316\|120
chr7_2	exon	10487169	10487578	10487169	ID=Msa1048690-mRNA-1:exon:2776;Parent=Msa1048690-mRNA-1
chr7_2	exon	10487667	10487776	10487667	ID=Msa1048690-mRNA-1:exon:2775;Parent=Msa1048690-mRNA-1
chr7_2	exon	10489086	10489165	10489086	ID=Msa1048690-mRNA-1:exon:2774;Parent=Msa1048690-mRNA-1
chr7_2	exon	10489312	10489453	10489312	ID=Msa1048690-mRNA-1:exon:2773;Parent=Msa1048690-mRNA-1
chr7_2	five_prime_UTR	10489391	10489453	10489391	ID=Msa1048690-mRNA-1:five_prime_utr;Parent=Msa1048690-mRNA-1
chr7_2	CDS	10489312	10489390	10489312	ID=Msa1048690-mRNA-1:cds;Parent=Msa1048690-mRNA-1
chr7_2	CDS	10489086	10489165	10489086	ID=Msa1048690-mRNA-1:cds;Parent=Msa1048690-mRNA-1
chr7_2	CDS	10487667	10487776	10487667	ID=Msa1048690-mRNA-1:cds;Parent=Msa1048690-mRNA-1
chr7_2	CDS	10487485	10487578	10487485	ID=Msa1048690-mRNA-1:cds;Parent=Msa1048690-mRNA-1
chr7_2	three_prime_UTR	10487169	10487484	10487169	ID=Msa1048690-mRNA-1:three_prime_utr;Parent=Msa1048690-mRNA-1

Gene Sequence	>Msa1048690 ATGGTTCAGAGACTCACATACCGTAGGAGACACAGCTATGCCACCAAATCCAACCAGCACCGTGTTGTTAAGACACCTGGTGGAAAGTTGGTTTATCAGACAACTAAGAAGAGAGCTAGTGGACCTAAGTGTCCTGTTACTGGAAAGAGGATCCAAGGGATTCCACACTTGAGACCTACTGAATACAAGAGGTCTAGATTGCCTAGGAACCGCCGCACTGTTAACAGGGCTTATGGAGGTGTTTTATCCGGAGGAGCAGTTAGGGAAAGGATTATCCGTGCTTTCCTTGTTGAAGAGCAAAAAATAGTCAAGAAAGTTTTGAAGATCCAGAAAACAAAAGAAAAGCAAGCAGCTAAGAGTTAA
Protein sequence	>Msa1048690 MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKS*