AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0613580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0613580 MtrunA17_Chr4g0049011 97.314 633 17 0 39 671 1 633 0.0 1274
Msa0613580 MtrunA17_Chr2g0280421 65.597 561 172 5 109 660 222 770 0.0 724
Msa0613580 MtrunA17_Chr2g0280421 36.264 273 136 8 1 243 1 265 8.49e-31 129
Msa0613580 MtrunA17_Chr2g0319271 60.401 548 197 4 132 670 214 750 0.0 641
Msa0613580 MtrunA17_Chr4g0042061 60.401 548 196 5 132 670 247 782 0.0 639
Msa0613580 MtrunA17_Chr7g0272871 42.782 381 188 8 289 659 94 454 3.59e-84 280
Msa0613580 MtrunA17_Chr2g0312631 43.207 368 195 4 292 659 359 712 2.60e-83 283
Msa0613580 MtrunA17_Chr7g0271961 42.779 367 177 7 305 663 389 730 1.89e-82 280
Msa0613580 MtrunA17_Chr1g0191851 40.741 378 200 6 289 659 114 474 4.09e-82 275
Msa0613580 MtrunA17_Chr1g0192481 42.276 369 182 9 305 663 46 393 1.87e-81 269
Msa0613580 MtrunA17_Chr5g0411971 36.492 496 259 10 201 659 248 724 1.50e-80 276
Msa0613580 MtrunA17_Chr5g0421591 38.681 455 237 9 227 658 263 698 2.10e-80 273
Msa0613580 MtrunA17_Chr5g0421521 39.952 418 227 7 246 658 300 698 2.78e-78 268
Msa0613580 MtrunA17_Chr1g0195111 40.599 367 190 7 305 663 384 730 2.99e-78 269
Msa0613580 MtrunA17_Chr5g0407791 36.902 439 239 9 226 656 802 1210 3.01e-78 271
Msa0613580 MtrunA17_Chr8g0369881 36.404 456 247 11 222 656 763 1196 5.39e-78 271
Msa0613580 MtrunA17_Chr3g0102921 41.436 362 199 8 305 659 426 781 2.58e-74 259
Msa0613580 MtrunA17_Chr7g0257301 38.318 428 229 13 260 659 326 746 6.69e-74 258
Msa0613580 MtrunA17_Chr5g0447041 38.718 390 199 7 305 659 422 806 2.70e-73 257
Msa0613580 MtrunA17_Chr1g0191181 36.649 382 222 6 278 656 49 413 9.00e-67 231
Msa0613580 MtrunA17_Chr2g0327581 36.915 363 207 9 308 657 39 392 2.63e-56 207
Msa0613580 MtrunA17_Chr3g0122121 37.978 366 174 11 318 657 99 437 9.62e-56 206
Msa0613580 MtrunA17_Chr1g0178411 37.778 360 194 11 317 657 13 361 5.68e-55 202
Msa0613580 MtrunA17_Chr7g0266631 37.500 360 195 11 317 657 9 357 1.05e-54 202
Msa0613580 MtrunA17_Chr8g0377731 37.368 380 185 11 303 657 40 391 2.59e-54 201
Msa0613580 MtrunA17_Chr4g0045381 36.957 368 176 10 317 657 193 531 3.91e-53 198
Msa0613580 MtrunA17_Chr1g0182151 36.932 352 204 8 317 657 54 398 1.29e-52 196
Msa0613580 MtrunA17_Chr2g0322291 40.379 317 148 8 362 657 130 426 5.00e-52 194
Msa0613580 MtrunA17_Chr4g0069141 35.000 380 185 10 308 657 144 491 1.34e-50 191
Msa0613580 MtrunA17_Chr5g0427481 35.530 349 208 7 318 657 18 358 2.10e-50 189
Msa0613580 MtrunA17_Chr8g0367581 35.833 360 204 8 304 662 133 466 5.28e-50 188
Msa0613580 MtrunA17_Chr3g0134191 34.771 371 196 10 318 657 9 364 9.03e-50 187
Msa0613580 MtrunA17_Chr1g0193221 35.530 349 183 9 318 653 4 323 2.44e-48 183
Msa0613580 MtrunA17_Chr1g0153061 35.054 368 199 12 318 657 9 364 5.91e-48 182
Msa0613580 MtrunA17_Chr4g0053211 34.409 372 202 12 317 657 12 372 1.69e-47 181
Msa0613580 MtrunA17_Chr3g0132921 34.270 356 204 9 317 657 9 349 1.96e-47 175
Msa0613580 MtrunA17_Chr2g0307481 35.227 352 193 9 318 657 69 397 5.24e-47 176
Msa0613580 MtrunA17_Chr1g0152231 35.065 308 167 6 362 656 46 333 7.20e-45 172
Msa0613580 MtrunA17_Chr4g0035661 35.447 347 192 11 317 658 89 408 1.08e-43 169
Msa0613580 MtrunA17_Chr4g0062291 35.376 359 192 10 318 660 124 458 2.30e-43 166
Msa0613580 MtrunA17_Chr3g0145071 35.817 349 188 12 317 658 99 418 5.78e-43 167
Msa0613580 MtrunA17_Chr8g0386891 54.676 139 63 0 521 659 21 159 1.01e-41 157
Msa0613580 MtrunA17_Chr7g0269681 45.506 178 97 0 486 663 23 200 1.72e-41 157
Msa0613580 MtrunA17_Chr6g0483701 34.006 347 196 7 318 656 31 352 2.02e-40 159
Msa0613580 MtrunA17_Chr6g0484501 48.000 175 91 0 486 660 16 190 2.02e-40 148
Msa0613580 MtrunA17_Chr4g0070001 32.308 390 207 13 302 667 125 481 7.71e-40 157
Msa0613580 MtrunA17_Chr7g0238581 32.378 349 195 10 318 652 26 347 2.44e-39 154
Msa0613580 MtrunA17_Chr7g0258991 33.333 351 200 10 315 658 71 394 3.65e-39 155
Msa0613580 MtrunA17_Chr3g0142261 33.699 365 183 11 318 656 20 351 4.23e-39 155
Msa0613580 MtrunA17_Chr5g0445211 32.884 371 199 13 310 657 67 410 1.24e-38 154
Msa0613580 MtrunA17_Chr5g0398521 30.133 375 210 10 314 658 54 406 1.33e-38 153
Msa0613580 MtrunA17_Chr3g0101021 32.808 317 177 8 362 657 108 409 1.89e-38 153
Msa0613580 MtrunA17_Chr4g0036001 31.319 364 214 9 297 650 3 340 8.67e-38 150
Msa0613580 MtrunA17_Chr6g0485471 34.462 325 180 10 351 670 154 450 8.00e-37 146
Msa0613580 MtrunA17_Chr8g0390991 51.923 156 75 0 504 659 4 159 1.76e-36 144
Msa0613580 MtrunA17_Chr8g0372171 32.113 355 184 11 318 651 20 338 7.77e-36 145
Msa0613580 MtrunA17_Chr7g0245931 30.352 369 210 8 314 657 49 395 8.28e-36 144
Msa0613580 MtrunA17_Chr5g0405181 31.624 351 191 9 318 651 21 339 1.20e-35 144
Msa0613580 MtrunA17_Chr2g0331761 31.847 314 183 6 351 659 224 511 1.21e-34 140
Msa0613580 MtrunA17_Chr8g0386901 42.289 201 100 7 273 465 440 632 3.86e-32 132
Msa0613580 MtrunA17_Chr8g0390981 38.967 213 121 6 253 462 454 660 6.53e-32 132
Msa0613580 MtrunA17_Chr1g0187411 31.856 361 211 12 318 661 131 473 6.92e-32 132
Msa0613580 MtrunA17_Chr2g0295881 31.481 324 177 8 351 656 237 533 6.18e-31 129
Msa0613580 MtrunA17_Chr6g0484511 40.936 171 85 5 305 467 277 439 2.98e-30 125
Msa0613580 MtrunA17_Chr4g0067421 30.031 323 181 7 351 656 245 539 5.81e-30 126
Msa0613580 MtrunA17_Chr7g0269691 40.854 164 90 5 305 465 388 547 1.92e-28 120
Msa0613580 MtrunA17_Chr3g0142841 29.167 312 172 11 364 658 145 424 2.66e-20 96.3
Msa0613580 MtrunA17_Chr6g0470541 26.235 324 205 10 318 635 6 301 1.56e-17 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0613580 AT4G05190.2 63.604 566 187 5 109 660 200 760 0.0 702
Msa0613580 AT4G05190.2 32.000 250 136 9 21 252 13 246 3.52e-16 83.2
Msa0613580 AT4G05190.1 63.604 566 187 5 109 660 213 773 0.0 702
Msa0613580 AT4G05190.1 32.727 275 146 10 1 252 1 259 8.17e-20 94.7
Msa0613580 AT4G21270.1 59.641 612 229 4 59 660 173 776 0.0 700
Msa0613580 AT4G27180.1 59.415 547 194 7 132 665 206 737 0.0 621
Msa0613580 AT4G27180.2 59.415 547 194 7 132 665 206 737 0.0 621
Msa0613580 AT5G54670.1 58.000 550 201 8 132 671 215 744 0.0 609
Msa0613580 AT5G54670.2 58.000 550 201 8 132 671 215 744 0.0 609
Msa0613580 AT5G54670.3 58.000 550 201 8 132 671 155 684 0.0 608
Msa0613580 AT1G72250.1 46.175 366 180 5 296 659 470 820 7.90e-91 306
Msa0613580 AT1G72250.2 46.175 366 180 5 296 659 479 829 9.74e-91 306
Msa0613580 AT1G72250.3 46.175 366 180 5 296 659 491 841 1.11e-90 306
Msa0613580 AT1G72250.4 46.175 366 180 5 296 659 490 840 1.35e-90 306
Msa0613580 AT1G73860.2 35.714 602 281 15 103 659 218 758 7.95e-87 292
Msa0613580 AT1G73860.1 35.714 602 281 15 103 659 301 841 1.92e-86 292
Msa0613580 AT5G27550.2 43.264 386 196 6 278 659 93 459 9.44e-86 285
Msa0613580 AT5G27550.1 43.264 386 196 6 278 659 93 459 9.44e-86 285
Msa0613580 AT2G22610.2 42.440 377 200 3 283 659 383 742 7.79e-85 288
Msa0613580 AT2G22610.3 42.440 377 200 3 283 659 384 743 9.34e-85 288
Msa0613580 AT2G22610.1 42.440 377 200 3 283 659 383 742 9.71e-85 288
Msa0613580 AT1G18410.5 45.055 364 163 8 305 659 467 802 7.16e-83 282
Msa0613580 AT1G18410.3 44.687 367 168 8 305 659 477 820 1.89e-82 281
Msa0613580 AT1G18410.2 44.687 367 168 8 305 659 477 820 1.89e-82 281
Msa0613580 AT1G18410.1 45.055 364 163 8 305 659 620 955 2.49e-81 280
Msa0613580 AT1G18410.4 44.687 367 168 8 305 659 620 963 6.16e-81 279
Msa0613580 AT1G63640.1 41.985 393 204 7 273 659 429 803 1.26e-80 277
Msa0613580 AT1G63640.4 41.985 393 204 7 273 659 429 803 1.26e-80 277
Msa0613580 AT5G41310.1 42.175 377 171 7 291 659 398 735 1.39e-80 275
Msa0613580 AT1G63640.2 42.199 391 199 8 273 659 429 796 1.44e-80 276
Msa0613580 AT1G63640.3 41.985 393 204 7 273 659 429 803 1.61e-80 276
Msa0613580 AT1G63640.5 41.985 393 204 7 273 659 419 793 1.72e-80 276
Msa0613580 AT1G09170.4 38.498 426 241 8 243 663 358 767 1.93e-79 270
Msa0613580 AT1G09170.3 38.498 426 241 8 243 663 358 767 2.81e-79 269
Msa0613580 AT1G09170.7 38.498 426 241 8 243 663 358 767 2.81e-79 269
Msa0613580 AT2G47500.2 41.713 362 191 5 305 663 387 731 3.64e-79 271
Msa0613580 AT1G09170.2 38.498 426 241 8 243 663 358 767 4.49e-79 270
Msa0613580 AT2G47500.1 41.713 362 191 5 305 663 387 731 4.96e-79 271
Msa0613580 AT1G09170.5 38.498 426 241 8 243 663 358 767 1.35e-78 271
Msa0613580 AT5G27000.1 41.689 367 186 7 305 663 382 728 5.25e-77 266
Msa0613580 AT5G65930.3 36.697 436 252 7 222 656 803 1215 7.15e-77 268
Msa0613580 AT5G65930.2 36.697 436 252 7 222 656 797 1209 8.12e-77 268
Msa0613580 AT5G65930.1 36.697 436 252 7 222 656 796 1208 8.16e-77 268
Msa0613580 AT3G44730.1 40.166 361 189 7 307 659 367 708 4.10e-76 265
Msa0613580 AT3G44730.4 40.166 361 189 7 307 659 367 708 4.10e-76 265
Msa0613580 AT3G44730.2 40.166 361 189 7 307 659 412 753 6.15e-76 264
Msa0613580 AT3G44730.3 40.166 361 189 7 307 659 412 753 6.15e-76 264
Msa0613580 AT1G55550.1 38.542 384 203 7 283 659 57 414 1.33e-75 260
Msa0613580 AT3G10310.1 39.753 405 208 11 270 659 309 692 1.74e-74 258
Msa0613580 AT3G10310.2 39.753 405 208 11 270 659 309 692 1.82e-74 258
Msa0613580 AT5G27950.1 37.135 377 217 7 283 656 45 404 2.81e-67 232
Msa0613580 AT1G09170.1 36.235 425 216 9 243 663 358 731 4.16e-67 238
Msa0613580 AT1G09170.6 37.500 384 219 8 243 621 358 725 1.27e-65 230
Msa0613580 AT1G09170.8 37.500 384 219 8 243 621 358 725 1.27e-65 230
Msa0613580 AT3G45850.2 37.222 360 191 9 317 657 55 398 2.28e-56 207
Msa0613580 AT3G45850.1 37.222 360 191 9 317 657 55 398 2.28e-56 207
Msa0613580 AT2G37420.1 37.288 354 199 9 317 657 48 391 3.57e-55 204
Msa0613580 AT2G37420.2 37.288 354 199 9 317 657 48 391 3.57e-55 204
Msa0613580 AT2G36200.1 38.333 360 192 11 317 657 12 360 1.20e-54 202
Msa0613580 AT2G28620.3 37.360 356 196 10 317 657 50 393 2.56e-54 201
Msa0613580 AT2G28620.2 37.360 356 196 10 317 657 50 393 2.56e-54 201
Msa0613580 AT2G36200.2 38.333 360 192 11 317 657 12 360 2.87e-54 201
Msa0613580 AT2G28620.1 37.360 356 196 10 317 657 50 393 3.05e-54 201
Msa0613580 AT3G19050.1 37.017 362 184 10 317 657 193 531 2.58e-52 196
Msa0613580 AT3G44050.1 40.220 363 171 13 317 657 93 431 5.42e-52 195
Msa0613580 AT4G14150.1 38.199 322 157 8 360 657 124 427 1.40e-50 191
Msa0613580 AT3G23670.2 37.461 323 160 8 359 657 128 432 3.20e-49 186
Msa0613580 AT3G23670.1 37.461 323 160 8 359 657 128 432 3.93e-49 186
Msa0613580 AT3G17360.2 35.422 367 183 9 317 657 168 506 1.14e-48 185
Msa0613580 AT3G17360.3 35.422 367 183 9 317 657 168 506 1.18e-48 185
Msa0613580 AT3G17360.1 35.422 367 183 9 317 657 168 506 1.35e-48 185
Msa0613580 AT5G65460.2 30.088 452 270 9 210 653 36 449 5.17e-48 182
Msa0613580 AT3G50240.2 34.605 367 202 10 318 657 26 381 5.99e-48 182
Msa0613580 AT5G65460.6 30.254 433 258 8 229 653 53 449 7.01e-48 182
Msa0613580 AT5G65460.4 30.088 452 270 9 210 653 36 449 7.71e-48 182
Msa0613580 AT3G50240.4 34.605 367 202 10 318 657 26 381 8.41e-48 182
Msa0613580 AT5G65460.1 30.088 452 270 9 210 653 36 449 8.43e-48 182
Msa0613580 AT3G10180.2 35.244 349 185 7 318 653 4 324 1.00e-47 182
Msa0613580 AT3G50240.1 34.605 367 202 10 318 657 26 381 1.03e-47 181
Msa0613580 AT3G10180.1 35.244 349 185 7 318 653 4 324 1.05e-47 182
Msa0613580 AT5G60930.1 37.618 319 174 10 362 657 45 361 5.34e-47 180
Msa0613580 AT5G60930.3 37.618 319 174 10 362 657 45 361 7.11e-47 179
Msa0613580 AT5G60930.2 37.618 319 174 10 362 657 45 361 8.09e-47 179
Msa0613580 AT5G65460.3 29.605 456 274 9 210 653 36 456 2.63e-46 177
Msa0613580 AT4G39050.1 35.616 365 199 12 301 658 82 417 4.99e-46 176
Msa0613580 AT2G21380.2 36.389 360 185 14 310 658 97 423 7.29e-46 176
Msa0613580 AT2G21380.1 36.389 360 185 14 310 658 97 423 7.29e-46 176
Msa0613580 AT1G59540.1 36.000 300 165 7 364 656 46 325 7.23e-45 172
Msa0613580 AT5G47820.2 33.244 373 205 10 317 657 11 371 7.66e-45 173
Msa0613580 AT5G47820.1 33.244 373 205 10 317 657 11 371 7.66e-45 173
Msa0613580 AT5G10470.1 29.929 421 253 8 247 653 61 453 2.29e-43 169
Msa0613580 AT5G10470.2 29.929 421 253 8 247 653 61 453 2.46e-43 169
Msa0613580 AT5G06670.2 33.616 354 201 11 312 658 61 387 2.48e-43 168
Msa0613580 AT5G06670.3 33.616 354 201 11 312 658 61 387 2.48e-43 168
Msa0613580 AT5G06670.8 33.616 354 201 11 312 658 61 387 3.44e-43 166
Msa0613580 AT5G06670.4 33.616 354 201 11 312 658 61 387 3.44e-43 166
Msa0613580 AT5G06670.7 33.616 354 201 11 312 658 61 387 3.44e-43 166
Msa0613580 AT5G06670.5 33.616 354 201 11 312 658 61 387 3.63e-43 166
Msa0613580 AT1G18550.1 36.213 301 165 7 362 657 204 482 8.66e-43 165
Msa0613580 AT1G21730.1 36.080 352 191 12 314 658 72 396 1.95e-42 165
Msa0613580 AT3G49650.1 34.402 343 198 7 323 660 29 349 2.49e-42 164
Msa0613580 AT5G06670.6 33.058 363 200 12 312 658 61 396 9.91e-42 163
Msa0613580 AT5G06670.1 33.058 363 200 12 312 658 61 396 9.91e-42 163
Msa0613580 AT3G63480.2 33.520 358 196 12 317 657 3 335 1.57e-41 157
Msa0613580 AT3G12020.4 33.705 359 204 10 307 658 59 390 7.45e-41 160
Msa0613580 AT3G12020.1 33.705 359 204 10 307 658 59 390 7.45e-41 160
Msa0613580 AT3G12020.3 33.705 359 204 10 307 658 59 390 1.67e-40 159
Msa0613580 AT3G12020.2 33.705 359 204 10 307 658 59 390 1.67e-40 159
Msa0613580 AT3G63480.1 33.611 360 197 12 317 657 3 339 2.66e-40 154
Msa0613580 AT3G54870.1 32.923 325 175 9 356 658 144 447 4.38e-40 158
Msa0613580 AT3G54870.3 32.923 325 175 9 356 658 144 447 4.87e-40 158
Msa0613580 AT3G54870.2 32.923 325 175 9 356 658 144 447 5.01e-40 158
Msa0613580 AT1G18370.1 33.987 306 171 6 362 661 78 358 5.18e-39 155
Msa0613580 AT1G12430.2 31.267 371 202 11 318 658 71 418 2.27e-38 153
Msa0613580 AT1G12430.1 31.267 371 202 11 318 658 71 418 2.55e-38 152
Msa0613580 AT3G50240.3 37.234 282 147 7 401 657 3 279 2.90e-38 152
Msa0613580 AT5G02370.1 30.252 357 188 8 317 652 20 336 1.02e-37 148
Msa0613580 AT4G38950.3 32.797 311 167 7 362 656 60 344 1.07e-36 147
Msa0613580 AT4G38950.5 32.797 311 167 7 362 656 60 344 1.07e-36 147
Msa0613580 AT4G38950.4 32.797 311 167 7 362 656 60 344 1.07e-36 147
Msa0613580 AT4G38950.1 32.797 311 167 7 362 656 60 344 1.07e-36 147
Msa0613580 AT4G38950.2 32.797 311 167 7 362 656 60 344 1.07e-36 147
Msa0613580 AT3G43210.3 37.288 295 153 8 362 650 74 342 1.48e-36 147
Msa0613580 AT3G43210.5 37.288 295 153 8 362 650 74 342 1.48e-36 147
Msa0613580 AT3G43210.2 37.288 295 153 8 362 650 74 342 1.48e-36 147
Msa0613580 AT3G43210.4 37.288 295 153 8 362 650 74 342 1.48e-36 147
Msa0613580 AT3G43210.1 37.288 295 153 8 362 650 74 342 1.48e-36 147
Msa0613580 AT3G51150.2 33.238 349 188 10 318 651 18 336 1.53e-36 147
Msa0613580 AT3G51150.4 33.238 349 188 10 318 651 18 336 1.53e-36 147
Msa0613580 AT3G51150.3 33.238 349 188 10 318 651 18 336 1.53e-36 147
Msa0613580 AT3G51150.1 33.238 349 188 10 318 651 18 336 1.58e-36 147
Msa0613580 AT1G01950.2 30.352 369 210 10 314 657 57 403 1.90e-35 144
Msa0613580 AT5G66310.2 34.783 299 158 6 362 651 67 337 2.27e-35 144
Msa0613580 AT5G66310.3 34.783 299 158 6 362 651 67 337 2.27e-35 144
Msa0613580 AT5G66310.1 34.783 299 158 6 362 651 67 337 2.27e-35 144
Msa0613580 AT1G01950.1 30.352 369 210 10 314 657 57 403 2.41e-35 143
Msa0613580 AT4G14330.1 34.641 306 172 10 362 661 89 372 2.88e-35 143
Msa0613580 AT1G01950.3 30.352 369 210 10 314 657 57 403 3.03e-35 143
Msa0613580 AT3G16060.1 32.484 314 181 7 351 659 208 495 1.15e-34 140
Msa0613580 AT4G24170.1 33.876 307 157 10 359 651 47 321 1.89e-34 141
Msa0613580 AT4G24170.2 33.876 307 157 10 359 651 47 321 1.89e-34 141
Msa0613580 AT5G27950.2 35.887 248 148 4 410 656 1 238 2.26e-34 137
Msa0613580 AT2G21300.2 30.623 369 210 12 297 650 3 340 2.27e-34 140
Msa0613580 AT2G21300.4 30.623 369 210 12 297 650 3 340 2.27e-34 140
Msa0613580 AT2G21300.3 30.623 369 210 12 297 650 3 340 2.27e-34 140
Msa0613580 AT2G21300.1 30.623 369 210 12 297 650 3 340 2.27e-34 140
Msa0613580 AT2G21300.5 30.623 369 210 12 297 650 3 340 2.27e-34 140
Msa0613580 AT3G20150.1 33.333 318 172 10 362 656 136 436 2.88e-34 140
Msa0613580 AT3G20150.2 33.333 318 172 10 362 656 136 436 3.21e-34 140
Msa0613580 AT1G59540.2 35.573 253 137 6 410 656 1 233 2.31e-32 134
Msa0613580 AT3G16630.2 29.917 361 203 9 318 656 194 526 7.34e-30 126
Msa0613580 AT3G16630.1 29.917 361 203 9 318 656 194 526 7.34e-30 126
Msa0613580 AT1G01950.4 31.206 282 153 7 397 657 1 262 8.20e-26 113
Msa0613580 AT5G42490.1 32.922 243 132 5 362 599 56 272 1.68e-22 103
Msa0613580 AT5G42490.2 32.922 243 132 5 362 599 56 272 1.73e-22 103
Msa0613580 AT3G51150.5 42.553 141 67 3 521 651 47 183 1.05e-20 97.8
Msa0613580 AT5G65460.5 30.476 210 124 3 444 652 14 202 1.33e-19 94.4
Msa0613580 AT5G23910.2 28.808 302 174 13 357 653 54 319 5.72e-19 92.0
Msa0613580 AT5G23910.1 28.808 302 174 13 357 653 50 315 6.64e-19 91.7
Msa0613580 AT1G20060.9 29.450 309 181 10 364 658 165 450 3.59e-17 86.7
Msa0613580 AT1G20060.8 29.450 309 181 10 364 658 165 450 3.79e-17 86.3
Msa0613580 AT1G20060.10 29.450 309 181 10 364 658 165 450 3.89e-17 86.3
Msa0613580 AT1G20060.7 29.450 309 181 10 364 658 165 450 3.99e-17 86.3
Msa0613580 AT1G20060.5 29.450 309 181 10 364 658 165 450 4.03e-17 86.3
Msa0613580 AT1G20060.4 29.450 309 181 10 364 658 165 450 4.06e-17 86.3
Msa0613580 AT1G20060.6 29.450 309 181 10 364 658 165 450 4.11e-17 86.3
Msa0613580 AT1G20060.3 29.450 309 181 10 364 658 165 450 4.17e-17 86.3
Msa0613580 AT1G20060.2 29.450 309 181 10 364 658 165 450 4.22e-17 86.3
Msa0613580 AT1G20060.1 31.651 218 118 9 364 573 165 359 7.18e-13 72.8

Find 144 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAGAGCATGTTCCTTTC+AGG 0.194253 4_2:-62400917 Msa0613580:CDS
ATACTCAAAATTGGATAAAT+TGG 0.218313 4_2:-62403699 Msa0613580:CDS
TAGAGTCAATGCTGTGAAAT+TGG 0.225841 4_2:-62400244 Msa0613580:CDS
AAATGGAAACACACATGTTT+TGG 0.247585 4_2:-62401747 Msa0613580:CDS
AAACACAATAATACCTGATT+TGG 0.252458 4_2:+62401663 None:intergenic
GTTGACAAACATCAAAGTTT+TGG 0.254499 4_2:+62400323 None:intergenic
CCACTCAATGTTTAGAATCT+TGG 0.262112 4_2:-62400195 Msa0613580:exon
TAAGATCTCTTGTATCATTA+AGG 0.268393 4_2:+62404295 None:intergenic
ATATGAAACATACTCAAAAT+TGG 0.276205 4_2:-62403708 Msa0613580:CDS
GCTTAATGAGAAGATGAAAA+AGG 0.279628 4_2:-62405434 Msa0613580:CDS
ACCTGATTTGGGCAGCCTTT+TGG 0.295707 4_2:+62401675 None:intergenic
TGACAATAACAAATCTTTGA+TGG 0.318383 4_2:+62401847 None:intergenic
GCTTATGGACAAACGGGTTC+AGG 0.323393 4_2:-62402110 Msa0613580:CDS
CTGTACCAGTTGTGATATTT+CGG 0.337342 4_2:+62402743 None:intergenic
AAAGGAGAAAATAAATATAC+TGG 0.354702 4_2:-62403533 Msa0613580:CDS
AGAGTCAATGCTGTGAAATT+GGG 0.355203 4_2:-62400243 Msa0613580:CDS
CACTTCCAGCCAAATCAATC+AGG 0.357452 4_2:+62401146 None:intergenic
CGAGCAGAAAATAGTGTTCA+TGG 0.366475 4_2:-62401797 Msa0613580:CDS
GAGCAATGTCATATTTGCTT+TGG 0.367142 4_2:-62400946 Msa0613580:CDS
GGCATTGAGTTGGAACAAAA+TGG 0.370931 4_2:-62402946 Msa0613580:intron
AGAGTGTAGAACGAAATAAT+TGG 0.372051 4_2:+62400082 None:intergenic
TGTCTTAAACCTGATTGATT+TGG 0.373703 4_2:-62401155 Msa0613580:CDS
GGGGTGTGATTTGTGAAATT+GGG 0.374727 4_2:+62405909 None:intergenic
GAAGGTAGGGTTTGCGGAGG+TGG 0.377448 4_2:+62405872 None:intergenic
ATGAAGCGTTTCAATCTTGT+TGG 0.379069 4_2:+62404916 None:intergenic
AAAGAATTTCAAGTAGTTGA+AGG 0.379952 4_2:-62403206 Msa0613580:CDS
CTGGCCTACCCATCATTGTA+TGG 0.382914 4_2:+62402081 None:intergenic
TTGTTCACCATTGCAGTTAA+CGG 0.384857 4_2:+62405529 None:intergenic
TCCAAAAGGCTGCCCAAATC+AGG 0.391053 4_2:-62401676 Msa0613580:intron
GTGATTTGTGAAATTGGGAT+TGG 0.395381 4_2:+62405914 None:intergenic
AAGATTTGTTATTGTCAAAT+CGG 0.396139 4_2:-62401841 Msa0613580:CDS
CTCTTGTGTCTTCAGGTCAA+TGG 0.401417 4_2:-62401354 Msa0613580:intron
CCTTTGAGATCTGGAGAGTC+TGG 0.404474 4_2:+62402062 None:intergenic
TGATACAAGAGATCTTAATA+AGG 0.404932 4_2:-62404289 Msa0613580:CDS
AGATCTTAATAAGGAATTGC+AGG 0.409956 4_2:-62404280 Msa0613580:CDS
GGCTTAAGCTTTGTGTTCAA+TGG 0.411472 4_2:-62404943 Msa0613580:CDS
GTTAAGAAGTGTTCTGATAC+TGG 0.413284 4_2:-62404875 Msa0613580:intron
CTTTCAAGGAGTGGGGCCAC+TGG 0.419503 4_2:-62401118 Msa0613580:CDS
TCGTACCAGTTGACGGAGTC+AGG 0.425745 4_2:+62405836 None:intergenic
GGTATCATCCCTTTGAGATC+TGG 0.431597 4_2:+62402053 None:intergenic
ATGGAGAGACAAAGAGTGTC+TGG 0.432987 4_2:-62405571 Msa0613580:CDS
GGCCACTGGGGAACGTTTGA+AGG 0.442182 4_2:-62401104 Msa0613580:CDS
AAATATGACATTGCTCAAAC+AGG 0.446159 4_2:+62400953 None:intergenic
AAATGATGTAATGTTAGAAC+GGG 0.446420 4_2:-62403750 Msa0613580:CDS
TTTCAAGGAGTGGGGCCACT+GGG 0.447460 4_2:-62401117 Msa0613580:CDS
AACACAATAATACCTGATTT+GGG 0.450436 4_2:+62401664 None:intergenic
TGCTCAAACAGGAGAGACTT+TGG 0.452914 4_2:+62400964 None:intergenic
TTTCACCGAAATATCACAAC+TGG 0.454210 4_2:-62402748 Msa0613580:CDS
GATGGCTGATTTATCTGCTA+TGG 0.457746 4_2:-62403294 Msa0613580:CDS
GTCTTCCTGACTCCGTCAAC+TGG 0.457850 4_2:-62405841 Msa0613580:intron
CTGGTACAGAGTGCCCTTGA+TGG 0.459905 4_2:-62402729 Msa0613580:CDS
CTGGAAGTGAAAGACTTTCA+AGG 0.460124 4_2:-62401132 Msa0613580:CDS
AGAAGAGCATGTTCCTTTCA+GGG 0.462036 4_2:-62400916 Msa0613580:CDS
TCTTGTGTCTTCAGGTCAAT+GGG 0.464776 4_2:-62401353 Msa0613580:intron
GTCAATAGAAATGCTTGGCC+GGG 0.470648 4_2:-62402968 Msa0613580:CDS
CATGTTTCTTGTAGAAATAG+AGG 0.474231 4_2:-62400116 Msa0613580:three_prime_UTR
AGACAAACCTTATTATCAAA+AGG 0.474999 4_2:+62405406 None:intergenic
CGTCAATAGAAATGCTTGGC+CGG 0.476762 4_2:-62402969 Msa0613580:CDS
TGCTGAAAGGGAGAAGTTAG+AGG 0.476851 4_2:-62403497 Msa0613580:intron
AAAACTTACACACCTACTTC+AGG 0.477645 4_2:-62400889 Msa0613580:intron
TGGCTTCTCGGAATCAGAAC+CGG 0.478047 4_2:-62405729 Msa0613580:CDS
GAATCACCTTGTAGCCATCA+AGG 0.484630 4_2:+62402715 None:intergenic
TTAAACCTGATTGATTTGGC+TGG 0.484981 4_2:-62401151 Msa0613580:CDS
TCGTAAACTACAAGATCAAT+TGG 0.486302 4_2:-62403234 Msa0613580:CDS
ATTTGTGAAATTGGGATTGG+TGG 0.487553 4_2:+62405917 None:intergenic
GGAGACATGTTCCTCTCAAA+AGG 0.488466 4_2:-62403551 Msa0613580:CDS
ATATTACTAGGCATCAGTAT+TGG 0.491971 4_2:-62401885 Msa0613580:intron
GGATTGCAGCCATGTCTTGA+AGG 0.492427 4_2:-62400351 Msa0613580:intron
CTTTAAGAGACTGACTGGTC+TGG 0.494270 4_2:+62402009 None:intergenic
GGAGGTGGAGTTAGAAGAGA+AGG 0.497800 4_2:+62405887 None:intergenic
GCAAAAGTTACATGCTGAAA+GGG 0.498320 4_2:-62403509 Msa0613580:CDS
TGGCCTACCCATCATTGTAT+GGG 0.498624 4_2:+62402082 None:intergenic
GCTTGGCCGGGGCATTGAGT+TGG 0.504578 4_2:-62402956 Msa0613580:CDS
TGGCGAGAAGGTAGGGTTTG+CGG 0.507641 4_2:+62405866 None:intergenic
AGTCTCTTAAAGACCAGGGC+TGG 0.508242 4_2:-62401998 Msa0613580:CDS
GTGAAAGACTTTCAAGGAGT+GGG 0.510340 4_2:-62401126 Msa0613580:CDS
TCGTCAATTGAAGATTGATC+AGG 0.511344 4_2:+62400294 None:intergenic
GTTCACAAAAGATGATATAG+AGG 0.518156 4_2:-62405461 Msa0613580:CDS
GATGATCGCGATCGCCTACA+AGG 0.518619 4_2:-62403779 Msa0613580:CDS
GAGGTGGAGTTAGAAGAGAA+GGG 0.519391 4_2:+62405888 None:intergenic
TGAAATTGGGATTGGTGGCT+CGG 0.521834 4_2:+62405922 None:intergenic
AAAACTGCACAACACTGTCT+TGG 0.526321 4_2:-62403168 Msa0613580:intron
GATTTCCTCCCTCCTCCAAA+AGG 0.527021 4_2:-62401690 Msa0613580:CDS
TTGGAATCCCCTTCAAGACA+TGG 0.527970 4_2:+62400342 None:intergenic
AAGACGATGGCGAGAAGGTA+GGG 0.529617 4_2:+62405859 None:intergenic
CAGACTCTCCAGATCTCAAA+GGG 0.533076 4_2:-62402061 Msa0613580:CDS
AAAGGTTGGATCTGAAGAGA+TGG 0.533214 4_2:-62405590 Msa0613580:intron
GTTGTTACTTTGCGCATATG+TGG 0.534636 4_2:-62401290 Msa0613580:CDS
CAGTCAGTCTCTTAAAGACC+AGG 0.538247 4_2:-62402003 Msa0613580:CDS
AATATCTGTTCTAAAGAAAG+TGG 0.538396 4_2:+62402032 None:intergenic
GATTGCAGCCATGTCTTGAA+GGG 0.543595 4_2:-62400350 Msa0613580:intron
TAAATGATGTAATGTTAGAA+CGG 0.544042 4_2:-62403751 Msa0613580:CDS
TCTGAACGGTCTCGTAGTAA+AGG 0.547365 4_2:+62403018 None:intergenic
GAAGACGATGGCGAGAAGGT+AGG 0.547511 4_2:+62405858 None:intergenic
TGGGATTGGTGGCTCGGTGA+AGG 0.550844 4_2:+62405928 None:intergenic
TCAGGAAGACGATGGCGAGA+AGG 0.551767 4_2:+62405854 None:intergenic
GAGTGCCCTTGATGGCTACA+AGG 0.551892 4_2:-62402721 Msa0613580:intron
TAAACATTGAGTGGATGTCT+AGG 0.556673 4_2:+62400204 None:intergenic
CGCTACTGCAAGTAATGTAG+AGG 0.557272 4_2:-62405506 Msa0613580:CDS
AGCAAAAGTTACATGCTGAA+AGG 0.557415 4_2:-62403510 Msa0613580:CDS
TTTGTTCCAACTCAATGCCC+CGG 0.558295 4_2:+62402950 None:intergenic
CTGGTCTTTAAGAGACTGAC+TGG 0.561616 4_2:+62402004 None:intergenic
GGGCTGGAATTACAAAATGC+AGG 0.564720 4_2:-62401982 Msa0613580:intron
AGGTGGAGTTAGAAGAGAAG+GGG 0.565354 4_2:+62405889 None:intergenic
CCAAGATTCTAAACATTGAG+TGG 0.566179 4_2:+62400195 None:intergenic
CAAGCATTTCTATTGACGTA+GGG 0.573774 4_2:+62402974 None:intergenic
AAGTAAAACAGAGGCACTTG+AGG 0.575761 4_2:-62403675 Msa0613580:intron
ACAAGATTCGTACCAGTTGA+CGG 0.578548 4_2:+62405829 None:intergenic
TAGTTGAAGGAGAAAAGCTA+AGG 0.579762 4_2:-62403193 Msa0613580:CDS
GAGATCTGATTGAAGCTCCT+CGG 0.580804 4_2:+62404377 None:intergenic
GAGTCAATGCTGTGAAATTG+GGG 0.581648 4_2:-62400242 Msa0613580:CDS
ATAAATGGCTTACATTGGAG+TGG 0.585939 4_2:+62405695 None:intergenic
CCTACGTCAATAGAAATGCT+TGG 0.587483 4_2:-62402973 Msa0613580:CDS
TCAATAGAAATGCTTGGCCG+GGG 0.588845 4_2:-62402967 Msa0613580:CDS
CCAGACTCTCCAGATCTCAA+AGG 0.589964 4_2:-62402062 Msa0613580:CDS
ATGTTTCTTGTAGAAATAGA+GGG 0.591156 4_2:-62400115 Msa0613580:three_prime_UTR
GGTGGAGTTAGAAGAGAAGG+GGG 0.592235 4_2:+62405890 None:intergenic
AGACCGTTCAGAAACGAAAA+CGG 0.594643 4_2:-62403007 Msa0613580:CDS
CCAAGCATTTCTATTGACGT+AGG 0.594729 4_2:+62402973 None:intergenic
TAGAGCGCCGTTAACTGCAA+TGG 0.596034 4_2:-62405536 Msa0613580:CDS
AGTGAAAGACTTTCAAGGAG+TGG 0.608249 4_2:-62401127 Msa0613580:CDS
AACACTGAACAACAAGTACA+AGG 0.609494 4_2:-62401178 Msa0613580:CDS
TATTGTCAAATCGGTCAAGT+GGG 0.612810 4_2:-62401832 Msa0613580:CDS
TTATTGTCAAATCGGTCAAG+TGG 0.613155 4_2:-62401833 Msa0613580:CDS
AAACCCATACAATGATGGGT+AGG 0.615951 4_2:-62402085 Msa0613580:CDS
AATCACCTTGTAGCCATCAA+GGG 0.622158 4_2:+62402716 None:intergenic
ATTGCAGCCATGTCTTGAAG+GGG 0.623975 4_2:-62400349 Msa0613580:intron
GGAACGTTTGAAGGAAACTC+AGG 0.625035 4_2:-62401095 Msa0613580:intron
TTCCTTCAAACGTTCCCCAG+TGG 0.633447 4_2:+62401102 None:intergenic
GAGGAGGGAGGAAATCTCAT+CGG 0.641873 4_2:+62401697 None:intergenic
TGCGCAAAGTAACAACAAAG+TGG 0.643971 4_2:+62401297 None:intergenic
TGAAAGACTTTCAAGGAGTG+GGG 0.656119 4_2:-62401125 Msa0613580:CDS
TAAATTGGCAAGTAAAACAG+AGG 0.665756 4_2:-62403684 Msa0613580:CDS
GGTGAAAACGTCATGCTGAG+AGG 0.665998 4_2:+62402764 None:intergenic
GGCACTACAAACATCGACAA+TGG 0.670045 4_2:+62401718 None:intergenic
AGATGGTGGATCTTATTAAG+CGG 0.670837 4_2:-62404964 Msa0613580:CDS
GCTACTGCAAGTAATGTAGA+GGG 0.672984 4_2:-62405505 Msa0613580:CDS
TACAAACATCGACAATGGTG+AGG 0.674542 4_2:+62401723 None:intergenic
AGATCTCAATTCAGCTAACG+AGG 0.675031 4_2:-62404361 Msa0613580:CDS
TTCAAGGAGTGGGGCCACTG+GGG 0.688770 4_2:-62401116 Msa0613580:CDS
CGAGAAGGTAGGGTTTGCGG+AGG 0.696225 4_2:+62405869 None:intergenic
AGTCAGTCTCTTAAAGACCA+GGG 0.703830 4_2:-62402002 Msa0613580:CDS
TGACGGAGTCAGGAAGACGA+TGG 0.711558 4_2:+62405846 None:intergenic
GCGCATATGTGGTATAAACG+AGG 0.734281 4_2:-62401279 Msa0613580:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATCATTAATTACTTT+AGG - chr4_2:62403524-62403543 Msa0613580:CDS 10.0%
!! AGAAATATAAACAAATATAA+AGG + chr4_2:62403642-62403661 None:intergenic 10.0%
!!! GATTTTTATTTTACTTTTTT+TGG - chr4_2:62405396-62405415 Msa0613580:intron 10.0%
!! TTAACTACATGATAAAATTA+GGG + chr4_2:62400247-62400266 None:intergenic 15.0%
!!! AAGCTTAATTTTTTTATAGA+TGG - chr4_2:62400282-62400301 Msa0613580:CDS 15.0%
!! AAAAATACGAATTTGATAAA+TGG + chr4_2:62400354-62400373 None:intergenic 15.0%
!!! TCAAATATTTTATCTTTAAG+CGG - chr4_2:62400817-62400836 Msa0613580:intron 15.0%
!!! TCTTTTAATGTTATAAAAGT+AGG - chr4_2:62400971-62400990 Msa0613580:CDS 15.0%
!! ATTATATTTATCACAAAAGA+CGG + chr4_2:62401195-62401214 None:intergenic 15.0%
!! TAAATATAATAAAACCCAAT+TGG + chr4_2:62402564-62402583 None:intergenic 15.0%
!!! GGGTTTTATTATATTTAATA+TGG - chr4_2:62402567-62402586 Msa0613580:intron 15.0%
!!! TTATGAGAAACTTTTAATAA+TGG + chr4_2:62402604-62402623 None:intergenic 15.0%
!! AAATGATAAAATGTTTATGA+TGG - chr4_2:62402626-62402645 Msa0613580:intron 15.0%
!!! AATAACTTATATTTTCTTTC+TGG - chr4_2:62402702-62402721 Msa0613580:intron 15.0%
!!! ATAACTTATATTTTCTTTCT+GGG - chr4_2:62402703-62402722 Msa0613580:intron 15.0%
!!! GCTAAATTATTTTTATTTCT+AGG - chr4_2:62402952-62402971 Msa0613580:CDS 15.0%
!!! ATTTTCATATTCATATTACT+AGG - chr4_2:62404134-62404153 Msa0613580:intron 15.0%
!! GCATTATGAAATAAATAATA+AGG + chr4_2:62404814-62404833 None:intergenic 15.0%
!! TCAATAATGCAAAATTATAT+GGG + chr4_2:62405178-62405197 None:intergenic 15.0%
!! ATCAATAATGCAAAATTATA+TGG + chr4_2:62405179-62405198 None:intergenic 15.0%
!! GTTAACTACATGATAAAATT+AGG + chr4_2:62400248-62400267 None:intergenic 20.0%
!!! TTCTTATGATTTCTGAAAAA+AGG - chr4_2:62400423-62400442 Msa0613580:intron 20.0%
!!! TTATCTTACTCAATTTTTCA+AGG - chr4_2:62400647-62400666 Msa0613580:intron 20.0%
!!! TATCTTACTCAATTTTTCAA+GGG - chr4_2:62400648-62400667 Msa0613580:intron 20.0%
!!! TTTTGAAGAACTTTTGAAAA+CGG - chr4_2:62400721-62400740 Msa0613580:intron 20.0%
!!! TTTTGATATGCAGAAAAAAA+TGG - chr4_2:62401041-62401060 Msa0613580:intron 20.0%
!! TGTGATAAATATAATTGTGT+TGG - chr4_2:62401200-62401219 Msa0613580:intron 20.0%
!! GTGATAAATATAATTGTGTT+GGG - chr4_2:62401201-62401220 Msa0613580:intron 20.0%
!!! AAGTAGTTTGCTTATATAAT+AGG - chr4_2:62401396-62401415 Msa0613580:intron 20.0%
!!! TAAAGCAAAACAAAGATTTT+TGG + chr4_2:62401523-62401542 None:intergenic 20.0%
!! ACTCAAAATAAATACTTTCA+GGG + chr4_2:62401559-62401578 None:intergenic 20.0%
!! TACTCAAAATAAATACTTTC+AGG + chr4_2:62401560-62401579 None:intergenic 20.0%
!!! TGAAAGTATTTATTTTGAGT+AGG - chr4_2:62401559-62401578 Msa0613580:intron 20.0%
!!! CACATACATTTTTTATGATT+TGG + chr4_2:62401872-62401891 None:intergenic 20.0%
!! AAAAAATTTCCAATAGGTAT+AGG + chr4_2:62401897-62401916 None:intergenic 20.0%
!! TTTGTTAAAGAATGAATTGA+AGG - chr4_2:62401922-62401941 Msa0613580:intron 20.0%
!!! TAATTTTTTTTAGTTCTTCG+CGG + chr4_2:62402230-62402249 None:intergenic 20.0%
!! TAAATGATGTAATGTTAGAA+CGG - chr4_2:62402280-62402299 Msa0613580:intron 20.0%
!! ATATGAAACATACTCAAAAT+TGG - chr4_2:62402323-62402342 Msa0613580:intron 20.0%
!! ATACTCAAAATTGGATAAAT+TGG - chr4_2:62402332-62402351 Msa0613580:intron 20.0%
!! AAAGGAGAAAATAAATATAC+TGG - chr4_2:62402498-62402517 Msa0613580:intron 20.0%
!!! ATATAAGTTATTGTCAGTTT+TGG + chr4_2:62402694-62402713 None:intergenic 20.0%
!!! TAACTTATATTTTCTTTCTG+GGG - chr4_2:62402704-62402723 Msa0613580:intron 20.0%
!! ATTGATTGAATGTTTAATGT+TGG - chr4_2:62403472-62403491 Msa0613580:intron 20.0%
!!! TTTAAAACAGAGGTTTTTAA+AGG + chr4_2:62403587-62403606 None:intergenic 20.0%
!!! TTGATTTGTTGTTTTGTTTT+GGG - chr4_2:62403847-62403866 Msa0613580:intron 20.0%
!! GTAATATGAATATGAAAATC+AGG + chr4_2:62404133-62404152 None:intergenic 20.0%
!!! AAGATTTGTTATTGTCAAAT+CGG - chr4_2:62404190-62404209 Msa0613580:intron 20.0%
!! CATATAAAGAAAACATTTAC+AGG + chr4_2:62404409-62404428 None:intergenic 20.0%
!!! CTGTAAATGTTTTCTTTATA+TGG - chr4_2:62404407-62404426 Msa0613580:intron 20.0%
!!! TGGAAATAGTATTTTCAATA+CGG + chr4_2:62404486-62404505 None:intergenic 20.0%
!! ATTGGATTCTAATATACTTA+TGG - chr4_2:62405322-62405341 Msa0613580:intron 20.0%
!! TTGGATTCTAATATACTTAT+GGG - chr4_2:62405323-62405342 Msa0613580:intron 20.0%
!!! ACAATTAAAAGCATCAATTA+AGG - chr4_2:62405365-62405384 Msa0613580:intron 20.0%
!! CGACAATATAAATATGTTAT+GGG + chr4_2:62405661-62405680 None:intergenic 20.0%
!! CCATAACATATTTATATTGT+CGG - chr4_2:62405659-62405678 Msa0613580:intron 20.0%
!!! TTTTTTTATAGATGGCTTCT+CGG - chr4_2:62400290-62400309 Msa0613580:CDS 25.0%
! ATTTGATAAATGGCTTACAT+TGG + chr4_2:62400344-62400363 None:intergenic 25.0%
!! TATGATTTCTGAAAAAAGGT+TGG - chr4_2:62400427-62400446 Msa0613580:intron 25.0%
! CTTAATGAGAAGATGAAAAA+GGG - chr4_2:62400598-62400617 Msa0613580:intron 25.0%
! AGACAAACCTTATTATCAAA+AGG + chr4_2:62400628-62400647 None:intergenic 25.0%
!! AATTAGGTTGTTTATCCAAT+CGG - chr4_2:62400936-62400955 Msa0613580:CDS 25.0%
!!! ATAAAAGTAGGTGTTGTTTA+TGG - chr4_2:62400983-62401002 Msa0613580:intron 25.0%
!! TGTTGTTTATGGAACTTATT+TGG - chr4_2:62400994-62401013 Msa0613580:intron 25.0%
! GTTGTTTATGGAACTTATTT+GGG - chr4_2:62400995-62401014 Msa0613580:intron 25.0%
! CTAATCAGTCACAATATTTA+GGG + chr4_2:62401282-62401301 None:intergenic 25.0%
! TTACTAGCAATTGTGAATTT+AGG - chr4_2:62401371-62401390 Msa0613580:intron 25.0%
! TAAGATCTCTTGTATCATTA+AGG + chr4_2:62401739-62401758 None:intergenic 25.0%
! TGATACAAGAGATCTTAATA+AGG - chr4_2:62401742-62401761 Msa0613580:CDS 25.0%
! TGTTATAAGTAACATTGTTG+CGG - chr4_2:62402044-62402063 Msa0613580:CDS 25.0%
! AAATGATGTAATGTTAGAAC+GGG - chr4_2:62402281-62402300 Msa0613580:intron 25.0%
! TAAATAGACGATCTTAACAT+AGG + chr4_2:62402405-62402424 None:intergenic 25.0%
!!! ATTTATTTTCTCCTTTTGAG+AGG + chr4_2:62402494-62402513 None:intergenic 25.0%
!! AAAGAATTTCAAGTAGTTGA+AGG - chr4_2:62402825-62402844 Msa0613580:intron 25.0%
! TGAAAATCGTAAGAAACAAT+AGG + chr4_2:62403143-62403162 None:intergenic 25.0%
!! AACACTCAATTTCTTTTTGT+AGG + chr4_2:62403396-62403415 None:intergenic 25.0%
!! GAAATAAACTGAACTTTTTG+TGG + chr4_2:62403707-62403726 None:intergenic 25.0%
!!! GTTGATTTGTTGTTTTGTTT+TGG - chr4_2:62403846-62403865 Msa0613580:intron 25.0%
! TTTGGGTATAAATTATGATC+TGG - chr4_2:62403864-62403883 Msa0613580:intron 25.0%
! TATAAATTATGATCTGGACA+TGG - chr4_2:62403870-62403889 Msa0613580:intron 25.0%
!!! AATATCTGTTCTAAAGAAAG+TGG + chr4_2:62404002-62404021 None:intergenic 25.0%
! TGACAATAACAAATCTTTGA+TGG + chr4_2:62404187-62404206 None:intergenic 25.0%
! ACTATTAGACATGACAAAAA+TGG - chr4_2:62404267-62404286 Msa0613580:CDS 25.0%
! AACACAATAATACCTGATTT+GGG + chr4_2:62404370-62404389 None:intergenic 25.0%
! AAACACAATAATACCTGATT+TGG + chr4_2:62404371-62404390 None:intergenic 25.0%
!! TCAAAAAGTGATAAGTTGAA+TGG + chr4_2:62404506-62404525 None:intergenic 25.0%
! TGGTTTCATTTATGAAACAT+AGG - chr4_2:62404637-62404656 Msa0613580:intron 25.0%
!! TTTTCATTGTTGTCATATTC+AGG - chr4_2:62405037-62405056 Msa0613580:intron 25.0%
! ATTGTAGATTGTGTTATGAT+TGG + chr4_2:62405559-62405578 None:intergenic 25.0%
! CCGACAATATAAATATGTTA+TGG + chr4_2:62405662-62405681 None:intergenic 25.0%
! ATGTTTCTTGTAGAAATAGA+GGG - chr4_2:62405916-62405935 Msa0613580:five_prime_UTR 25.0%
ACTACATGATAAAATTAGGG+AGG + chr4_2:62400244-62400263 None:intergenic 30.0%
! ATCTTTTGTGAACTCAATTG+CGG + chr4_2:62400563-62400582 None:intergenic 30.0%
GTTCACAAAAGATGATATAG+AGG - chr4_2:62400570-62400589 Msa0613580:intron 30.0%
GCTTAATGAGAAGATGAAAA+AGG - chr4_2:62400597-62400616 Msa0613580:intron 30.0%
AGCTGCAAATTAAGCTAATT+AGG - chr4_2:62400920-62400939 Msa0613580:CDS 30.0%
! ATTAGGTTGTTTATCCAATC+GGG - chr4_2:62400937-62400956 Msa0613580:CDS 30.0%
TTCTGCATATCAAAAACATG+AGG + chr4_2:62401036-62401055 None:intergenic 30.0%
CCTAATCAGTCACAATATTT+AGG + chr4_2:62401283-62401302 None:intergenic 30.0%
CCTAAATATTGTGACTGATT+AGG - chr4_2:62401280-62401299 Msa0613580:CDS 30.0%
AGATCTTAATAAGGAATTGC+AGG - chr4_2:62401751-62401770 Msa0613580:CDS 30.0%
AGCAGCAAAAAATTTCCAAT+AGG + chr4_2:62401903-62401922 None:intergenic 30.0%
CAAAATTCAAGTGCTTGAAA+AGG + chr4_2:62402021-62402040 None:intergenic 30.0%
AATCCTGAGATAAGAAGAAA+GGG + chr4_2:62402173-62402192 None:intergenic 30.0%
!!! CATCATTTAGTTTTCCTTGT+AGG + chr4_2:62402269-62402288 None:intergenic 30.0%
TAAATTGGCAAGTAAAACAG+AGG - chr4_2:62402347-62402366 Msa0613580:intron 30.0%
CAATAATGTGTTTCCTTTAC+AGG - chr4_2:62402459-62402478 Msa0613580:intron 30.0%
AAGTTAGAGGTAATCCAATT+GGG - chr4_2:62402547-62402566 Msa0613580:intron 30.0%
TCGTAAACTACAAGATCAAT+TGG - chr4_2:62402797-62402816 Msa0613580:CDS 30.0%
!!! TTTTATTTCTAGGAGCTGAA+AGG - chr4_2:62402962-62402981 Msa0613580:CDS 30.0%
TTGTCCTGTAAAAAATTAGC+AGG - chr4_2:62403200-62403219 Msa0613580:CDS 30.0%
! ACAGCTTTTTACATTTGACA+AGG - chr4_2:62403229-62403248 Msa0613580:CDS 30.0%
ATGATACATTATGAAGCGAA+AGG + chr4_2:62403352-62403371 None:intergenic 30.0%
CTTTCTTGTGTTTGATATCT+TGG - chr4_2:62403668-62403687 Msa0613580:intron 30.0%
CAAAGAATATGTGAAGGAAA+AGG + chr4_2:62403816-62403835 None:intergenic 30.0%
! CTTTTCCTTCACATATTCTT+TGG - chr4_2:62403814-62403833 Msa0613580:CDS 30.0%
! TAGGTATGCATTTTTGCTTA+TGG - chr4_2:62403906-62403925 Msa0613580:intron 30.0%
! CATTTTTGCTTATGGACAAA+CGG - chr4_2:62403914-62403933 Msa0613580:intron 30.0%
! ATTTTTGCTTATGGACAAAC+GGG - chr4_2:62403915-62403934 Msa0613580:intron 30.0%
TTGACATGTTGTCACATAAA+TGG - chr4_2:62404099-62404118 Msa0613580:intron 30.0%
ATATTACTAGGCATCAGTAT+TGG - chr4_2:62404146-62404165 Msa0613580:intron 30.0%
! AAATGGAAACACACATGTTT+TGG - chr4_2:62404284-62404303 Msa0613580:CDS 30.0%
TATTGTGTTTGCTCCATATT+AGG - chr4_2:62404381-62404400 Msa0613580:CDS 30.0%
ACATTTACAGGATCCTAATA+TGG + chr4_2:62404397-62404416 None:intergenic 30.0%
TGGTGTAAGAATAAACATTG+TGG - chr4_2:62404427-62404446 Msa0613580:intron 30.0%
GGTGTAAGAATAAACATTGT+GGG - chr4_2:62404428-62404447 Msa0613580:intron 30.0%
TGTAACAAAACTTATCGTGA+AGG + chr4_2:62404784-62404803 None:intergenic 30.0%
TGTCTTAAACCTGATTGATT+TGG - chr4_2:62404876-62404895 Msa0613580:CDS 30.0%
! GGTTTTTATATACCTGAAGT+AGG + chr4_2:62405157-62405176 None:intergenic 30.0%
GCAGTATCATTTCTTAAGAT+TGG - chr4_2:62405304-62405323 Msa0613580:intron 30.0%
ATCATCTCATGTTAGAACTT+AGG - chr4_2:62405526-62405545 Msa0613580:CDS 30.0%
! GTTGACAAACATCAAAGTTT+TGG + chr4_2:62405711-62405730 None:intergenic 30.0%
CATGTTTCTTGTAGAAATAG+AGG - chr4_2:62405915-62405934 Msa0613580:five_prime_UTR 30.0%
ATTTGTGAAATTGGGATTGG+TGG + chr4_2:62400117-62400136 None:intergenic 35.0%
! GTGATTTGTGAAATTGGGAT+TGG + chr4_2:62400120-62400139 None:intergenic 35.0%
AGGGAGGAATGAAATTGAAA+TGG + chr4_2:62400228-62400247 None:intergenic 35.0%
ATAAATGGCTTACATTGGAG+TGG + chr4_2:62400339-62400358 None:intergenic 35.0%
TTGTTCACCATTGCAGTTAA+CGG + chr4_2:62400505-62400524 None:intergenic 35.0%
!! GGGAACTCCTTTTGATAATA+AGG - chr4_2:62400618-62400637 Msa0613580:intron 35.0%
TCGAATAAGTCAATCCAAAC+GGG + chr4_2:62400674-62400693 None:intergenic 35.0%
CTCGAATAAGTCAATCCAAA+CGG + chr4_2:62400675-62400694 None:intergenic 35.0%
!! GAACTTTTGAAAACGGCTTA+TGG - chr4_2:62400728-62400747 Msa0613580:intron 35.0%
ATTTCCAGCAAAAAGCTATG+CGG + chr4_2:62400795-62400814 None:intergenic 35.0%
! TTAGGTTGTTTATCCAATCG+GGG - chr4_2:62400938-62400957 Msa0613580:CDS 35.0%
ATGGAACTTATTTGGGTGTT+TGG - chr4_2:62401002-62401021 Msa0613580:intron 35.0%
!! AGATGGTGGATCTTATTAAG+CGG - chr4_2:62401067-62401086 Msa0613580:intron 35.0%
! ATGAAGCGTTTCAATCTTGT+TGG + chr4_2:62401118-62401137 None:intergenic 35.0%
!! GTTAAGAAGTGTTCTGATAC+TGG - chr4_2:62401156-62401175 Msa0613580:CDS 35.0%
CCAAAAGACCAAAACTAATG+CGG - chr4_2:62401234-62401253 Msa0613580:intron 35.0%
CTAGTGATTGTGCCATAATT+TGG - chr4_2:62401439-62401458 Msa0613580:intron 35.0%
TGAGATGAAAAATAAGACCG+AGG - chr4_2:62401637-62401656 Msa0613580:intron 35.0%
GTATGTGAACCTATACCTAT+TGG - chr4_2:62401885-62401904 Msa0613580:intron 35.0%
AATTCAAGTGCTTGAAAAGG+AGG + chr4_2:62402018-62402037 None:intergenic 35.0%
TTGCGGAGAGGAAATAATTA+AGG - chr4_2:62402061-62402080 Msa0613580:CDS 35.0%
CTTGCAACAAAACTATGGAA+AGG + chr4_2:62402124-62402143 None:intergenic 35.0%
AACGCAACACAAAAAATGAG+AGG + chr4_2:62402147-62402166 None:intergenic 35.0%
GAATCCTGAGATAAGAAGAA+AGG + chr4_2:62402174-62402193 None:intergenic 35.0%
AGCAAAAGTTACATGCTGAA+AGG - chr4_2:62402521-62402540 Msa0613580:intron 35.0%
GCAAAAGTTACATGCTGAAA+GGG - chr4_2:62402522-62402541 Msa0613580:intron 35.0%
GAAGTTAGAGGTAATCCAAT+TGG - chr4_2:62402546-62402565 Msa0613580:intron 35.0%
TAGTTGAAGGAGAAAAGCTA+AGG - chr4_2:62402838-62402857 Msa0613580:intron 35.0%
!! AACACTGTCTTGGTAATGTT+TGG - chr4_2:62402873-62402892 Msa0613580:intron 35.0%
CAAGCATTTCTATTGACGTA+GGG + chr4_2:62403060-62403079 None:intergenic 35.0%
ATCGTAAGAAACAATAGGAG+TGG + chr4_2:62403138-62403157 None:intergenic 35.0%
!!! CTGTCCTGCTAATTTTTTAC+AGG + chr4_2:62403207-62403226 None:intergenic 35.0%
TTTCACCGAAATATCACAAC+TGG - chr4_2:62403283-62403302 Msa0613580:CDS 35.0%
CTGTACCAGTTGTGATATTT+CGG + chr4_2:62403291-62403310 None:intergenic 35.0%
ATACATTATGAAGCGAAAGG+AGG + chr4_2:62403349-62403368 None:intergenic 35.0%
!!! GTGGAGCTTTTTTAAAACAG+AGG + chr4_2:62403597-62403616 None:intergenic 35.0%
!! TTGTGTACTTCAAGTGTTGA+TGG + chr4_2:62403619-62403638 None:intergenic 35.0%
AGAAGCCAAAGAATATGTGA+AGG + chr4_2:62403822-62403841 None:intergenic 35.0%
ACATGGCTGTTTATTATGCT+AGG - chr4_2:62403887-62403906 Msa0613580:intron 35.0%
AGGAAAAACCCATACAATGA+TGG - chr4_2:62403941-62403960 Msa0613580:intron 35.0%
GGAAAAACCCATACAATGAT+GGG - chr4_2:62403942-62403961 Msa0613580:intron 35.0%
TGGAATTACAAAATGCAGGT+TGG - chr4_2:62404053-62404072 Msa0613580:intron 35.0%
TTATTGTCAAATCGGTCAAG+TGG - chr4_2:62404198-62404217 Msa0613580:intron 35.0%
TATTGTCAAATCGGTCAAGT+GGG - chr4_2:62404199-62404218 Msa0613580:intron 35.0%
ACTAGAGTCTACATATAGCT+TGG - chr4_2:62404614-62404633 Msa0613580:intron 35.0%
AACACTGAACAACAAGTACA+AGG - chr4_2:62404853-62404872 Msa0613580:intron 35.0%
!! TTAAACCTGATTGATTTGGC+TGG - chr4_2:62404880-62404899 Msa0613580:CDS 35.0%
TATTTATGATCTTGAGCTCC+TGG - chr4_2:62404982-62405001 Msa0613580:intron 35.0%
AGAAAGTTGAATCATTCACC+AGG + chr4_2:62405003-62405022 None:intergenic 35.0%
GAGCAATGTCATATTTGCTT+TGG - chr4_2:62405085-62405104 Msa0613580:intron 35.0%
!!! GTAAGTTTTGAATCCCTGAA+AGG + chr4_2:62405131-62405150 None:intergenic 35.0%
AAAACTTACACACCTACTTC+AGG - chr4_2:62405142-62405161 Msa0613580:intron 35.0%
!! CTTGTTTCAACGGATTAAAG+CGG + chr4_2:62405472-62405491 None:intergenic 35.0%
! GAGTGACTTTCTTGTTTCAA+CGG + chr4_2:62405482-62405501 None:intergenic 35.0%
TCAAGTCCATATTCTCTGAA+GGG + chr4_2:62405504-62405523 None:intergenic 35.0%
ATCAAGTCCATATTCTCTGA+AGG + chr4_2:62405505-62405524 None:intergenic 35.0%
! TAAATATGTTATGGGAGCAC+TGG + chr4_2:62405653-62405672 None:intergenic 35.0%
TCGTCAATTGAAGATTGATC+AGG + chr4_2:62405740-62405759 None:intergenic 35.0%
TAGAGTCAATGCTGTGAAAT+TGG - chr4_2:62405787-62405806 Msa0613580:intron 35.0%
AGAGTCAATGCTGTGAAATT+GGG - chr4_2:62405788-62405807 Msa0613580:intron 35.0%
TAAACATTGAGTGGATGTCT+AGG + chr4_2:62405830-62405849 None:intergenic 35.0%
CCAAGATTCTAAACATTGAG+TGG + chr4_2:62405839-62405858 None:intergenic 35.0%
! CCACTCAATGTTTAGAATCT+TGG - chr4_2:62405836-62405855 Msa0613580:intron 35.0%
! GGGGTGTGATTTGTGAAATT+GGG + chr4_2:62400125-62400144 None:intergenic 40.0%
ACAAGATTCGTACCAGTTGA+CGG + chr4_2:62400205-62400224 None:intergenic 40.0%
!! CTTACATTGGAGTGGTTTTG+AGG + chr4_2:62400331-62400350 None:intergenic 40.0%
AAAGGTTGGATCTGAAGAGA+TGG - chr4_2:62400441-62400460 Msa0613580:intron 40.0%
GCTACTGCAAGTAATGTAGA+GGG - chr4_2:62400526-62400545 Msa0613580:intron 40.0%
TTTCCAGCAAAAAGCTATGC+GGG + chr4_2:62400794-62400813 None:intergenic 40.0%
AGATAGATTAAAGCCCCGAT+TGG + chr4_2:62400954-62400973 None:intergenic 40.0%
GCAGAAAAAAATGGAGCAGA+TGG - chr4_2:62401050-62401069 Msa0613580:intron 40.0%
GAAAAAAATGGAGCAGATGG+TGG - chr4_2:62401053-62401072 Msa0613580:intron 40.0%
! GGCTTAAGCTTTGTGTTCAA+TGG - chr4_2:62401088-62401107 Msa0613580:intron 40.0%
!!! CCGCATTAGTTTTGGTCTTT+TGG + chr4_2:62401237-62401256 None:intergenic 40.0%
!! AAGTCTCTCCGCATTAGTTT+TGG + chr4_2:62401245-62401264 None:intergenic 40.0%
!! TTTTGTGTGTGCTTTTTGCG+TGG - chr4_2:62401311-62401330 Msa0613580:CDS 40.0%
CTCTCTACAGTGCCAAATTA+TGG + chr4_2:62401454-62401473 None:intergenic 40.0%
AGATCTCAATTCAGCTAACG+AGG - chr4_2:62401670-62401689 Msa0613580:intron 40.0%
ATGAATTGAAGGAGAGTAGC+TGG - chr4_2:62401933-62401952 Msa0613580:intron 40.0%
TGAATTGAAGGAGAGTAGCT+GGG - chr4_2:62401934-62401953 Msa0613580:intron 40.0%
! AAAGGAGGAGGCTAATGTTT+TGG + chr4_2:62402003-62402022 None:intergenic 40.0%
TAAGTAACATTGTTGCGGAG+AGG - chr4_2:62402049-62402068 Msa0613580:CDS 40.0%
AGAGGCTTGCAACAAAACTA+TGG + chr4_2:62402129-62402148 None:intergenic 40.0%
GATCCCTTTCTTCTTATCTC+AGG - chr4_2:62402167-62402186 Msa0613580:intron 40.0%
!! AAGTAAAACAGAGGCACTTG+AGG - chr4_2:62402356-62402375 Msa0613580:intron 40.0%
!!! TATTTTCTTTCTGGGGCTTC+TGG - chr4_2:62402711-62402730 Msa0613580:intron 40.0%
! GATGGCTGATTTATCTGCTA+TGG - chr4_2:62402737-62402756 Msa0613580:CDS 40.0%
AAAACTGCACAACACTGTCT+TGG - chr4_2:62402863-62402882 Msa0613580:intron 40.0%
AGACCGTTCAGAAACGAAAA+CGG - chr4_2:62403024-62403043 Msa0613580:CDS 40.0%
! CAACCGTTTTCGTTTCTGAA+CGG + chr4_2:62403030-62403049 None:intergenic 40.0%
CCAAGCATTTCTATTGACGT+AGG + chr4_2:62403061-62403080 None:intergenic 40.0%
CCTACGTCAATAGAAATGCT+TGG - chr4_2:62403058-62403077 Msa0613580:CDS 40.0%
!! GGCATTGAGTTGGAACAAAA+TGG - chr4_2:62403085-62403104 Msa0613580:intron 40.0%
AAACAATAGGAGTGGAGTAG+CGG + chr4_2:62403130-62403149 None:intergenic 40.0%
AATCACCTTGTAGCCATCAA+GGG + chr4_2:62403318-62403337 None:intergenic 40.0%
!! TGTACTTCAAGTGTTGATGG+TGG + chr4_2:62403616-62403635 None:intergenic 40.0%
TGATATCTTGGATGTGCCTT+TGG - chr4_2:62403680-62403699 Msa0613580:CDS 40.0%
! CTGAACTTTTTGTGGTCCAA+AGG + chr4_2:62403699-62403718 None:intergenic 40.0%
ATTGTACCCTTACGTAGACA+TGG - chr4_2:62403775-62403794 Msa0613580:CDS 40.0%
AGTAAGCCATGTCTACGTAA+GGG + chr4_2:62403784-62403803 None:intergenic 40.0%
!! AAACCCATACAATGATGGGT+AGG - chr4_2:62403946-62403965 Msa0613580:intron 40.0%
AGTCAGTCTCTTAAAGACCA+GGG - chr4_2:62404029-62404048 Msa0613580:intron 40.0%
! CACTATTTTCTGCTCGTGTT+TGG + chr4_2:62404230-62404249 None:intergenic 40.0%
CGAGCAGAAAATAGTGTTCA+TGG - chr4_2:62404234-62404253 Msa0613580:intron 40.0%
TACAAACATCGACAATGGTG+AGG + chr4_2:62404311-62404330 None:intergenic 40.0%
! CAGTATGCTCTTGTTGTACT+TGG - chr4_2:62404586-62404605 Msa0613580:intron 40.0%
AGAGTCTACATATAGCTTGG+TGG - chr4_2:62404617-62404636 Msa0613580:intron 40.0%
ATTGACCTGAAGACACAAGA+GGG + chr4_2:62404678-62404697 None:intergenic 40.0%
TCTTGTGTCTTCAGGTCAAT+GGG - chr4_2:62404678-62404697 Msa0613580:intron 40.0%
TGCGCAAAGTAACAACAAAG+TGG + chr4_2:62404737-62404756 None:intergenic 40.0%
!! GTTGTTACTTTGCGCATATG+TGG - chr4_2:62404741-62404760 Msa0613580:intron 40.0%
CTGGAAGTGAAAGACTTTCA+AGG - chr4_2:62404899-62404918 Msa0613580:CDS 40.0%
AGTGAAAGACTTTCAAGGAG+TGG - chr4_2:62404904-62404923 Msa0613580:CDS 40.0%
GTGAAAGACTTTCAAGGAGT+GGG - chr4_2:62404905-62404924 Msa0613580:CDS 40.0%
TGAAAGACTTTCAAGGAGTG+GGG - chr4_2:62404906-62404925 Msa0613580:CDS 40.0%
! AAGAAGAGCATGTTCCTTTC+AGG - chr4_2:62405114-62405133 Msa0613580:intron 40.0%
! AGAAGAGCATGTTCCTTTCA+GGG - chr4_2:62405115-62405134 Msa0613580:intron 40.0%
GAGTCAATGCTGTGAAATTG+GGG - chr4_2:62405789-62405808 Msa0613580:intron 40.0%
! TGAAATTGGGATTGGTGGCT+CGG + chr4_2:62400112-62400131 None:intergenic 45.0%
! GGGGGTGTGATTTGTGAAAT+TGG + chr4_2:62400126-62400145 None:intergenic 45.0%
AGGTGGAGTTAGAAGAGAAG+GGG + chr4_2:62400145-62400164 None:intergenic 45.0%
GAGGTGGAGTTAGAAGAGAA+GGG + chr4_2:62400146-62400165 None:intergenic 45.0%
!!! ACATTGGAGTGGTTTTGAGG+AGG + chr4_2:62400328-62400347 None:intergenic 45.0%
!! ATGGAGAGACAAAGAGTGTC+TGG - chr4_2:62400460-62400479 Msa0613580:intron 45.0%
CGCTACTGCAAGTAATGTAG+AGG - chr4_2:62400525-62400544 Msa0613580:intron 45.0%
!!! CAATTTTTCAAGGGCCCGTT+TGG - chr4_2:62400657-62400676 Msa0613580:intron 45.0%
! CTAATGCGGAGAGACTTGTT+TGG - chr4_2:62401248-62401267 Msa0613580:intron 45.0%
GAGATCTGATTGAAGCTCCT+CGG + chr4_2:62401657-62401676 None:intergenic 45.0%
TCAAGTGCTTGAAAAGGAGG+AGG + chr4_2:62402015-62402034 None:intergenic 45.0%
GAGGAACATGTCTCCTGTAA+AGG + chr4_2:62402475-62402494 None:intergenic 45.0%
GGAGACATGTTCCTCTCAAA+AGG - chr4_2:62402480-62402499 Msa0613580:intron 45.0%
TGCTGAAAGGGAGAAGTTAG+AGG - chr4_2:62402534-62402553 Msa0613580:intron 45.0%
TCTGAACGGTCTCGTAGTAA+AGG + chr4_2:62403016-62403035 None:intergenic 45.0%
CGTCAATAGAAATGCTTGGC+CGG - chr4_2:62403062-62403081 Msa0613580:intron 45.0%
GTCAATAGAAATGCTTGGCC+GGG - chr4_2:62403063-62403082 Msa0613580:intron 45.0%
TCAATAGAAATGCTTGGCCG+GGG - chr4_2:62403064-62403083 Msa0613580:intron 45.0%
TTTGTTCCAACTCAATGCCC+CGG + chr4_2:62403084-62403103 None:intergenic 45.0%
GAATCACCTTGTAGCCATCA+AGG + chr4_2:62403319-62403338 None:intergenic 45.0%
CAATCCACTTCACTTCCATG+TGG + chr4_2:62403759-62403778 None:intergenic 45.0%
CAGTAAGCCATGTCTACGTA+AGG + chr4_2:62403785-62403804 None:intergenic 45.0%
CTTACGTAGACATGGCTTAC+TGG - chr4_2:62403783-62403802 Msa0613580:CDS 45.0%
TGGCCTACCCATCATTGTAT+GGG + chr4_2:62403952-62403971 None:intergenic 45.0%
CAGACTCTCCAGATCTCAAA+GGG - chr4_2:62403970-62403989 Msa0613580:intron 45.0%
!! GGTATCATCCCTTTGAGATC+TGG + chr4_2:62403981-62404000 None:intergenic 45.0%
! CTTTAAGAGACTGACTGGTC+TGG + chr4_2:62404025-62404044 None:intergenic 45.0%
! CTGGTCTTTAAGAGACTGAC+TGG + chr4_2:62404030-62404049 None:intergenic 45.0%
CAGTCAGTCTCTTAAAGACC+AGG - chr4_2:62404028-62404047 Msa0613580:intron 45.0%
! GCATTTTGTAATTCCAGCCC+TGG + chr4_2:62404049-62404068 None:intergenic 45.0%
GGGCTGGAATTACAAAATGC+AGG - chr4_2:62404049-62404068 Msa0613580:intron 45.0%
GGCACTACAAACATCGACAA+TGG + chr4_2:62404316-62404335 None:intergenic 45.0%
TGTTACCCTCTTGTGTCTTC+AGG - chr4_2:62404670-62404689 Msa0613580:intron 45.0%
CATTGACCTGAAGACACAAG+AGG + chr4_2:62404679-62404698 None:intergenic 45.0%
CTCTTGTGTCTTCAGGTCAA+TGG - chr4_2:62404677-62404696 Msa0613580:intron 45.0%
GCGCATATGTGGTATAAACG+AGG - chr4_2:62404752-62404771 Msa0613580:intron 45.0%
CACTTCCAGCCAAATCAATC+AGG + chr4_2:62404888-62404907 None:intergenic 45.0%
GGAACGTTTGAAGGAAACTC+AGG - chr4_2:62404936-62404955 Msa0613580:CDS 45.0%
GTCACTCCCTTCAGAGAATA+TGG - chr4_2:62405495-62405514 Msa0613580:CDS 45.0%
GATTGCAGCCATGTCTTGAA+GGG - chr4_2:62405681-62405700 Msa0613580:intron 45.0%
ATTGCAGCCATGTCTTGAAG+GGG - chr4_2:62405682-62405701 Msa0613580:intron 45.0%
TTGGAATCCCCTTCAAGACA+TGG + chr4_2:62405692-62405711 None:intergenic 45.0%
!! AAAAAAAAAAAAAATCATAT+TGG + chr4_2:62401807-62401826 None:intergenic 5.0%
GGTGGAGTTAGAAGAGAAGG+GGG + chr4_2:62400144-62400163 None:intergenic 50.0%
GGAGGTGGAGTTAGAAGAGA+AGG + chr4_2:62400147-62400166 None:intergenic 50.0%
AAGACGATGGCGAGAAGGTA+GGG + chr4_2:62400175-62400194 None:intergenic 50.0%
TGGCTTCTCGGAATCAGAAC+CGG - chr4_2:62400302-62400321 Msa0613580:CDS 50.0%
!! TAGAGCGCCGTTAACTGCAA+TGG - chr4_2:62400495-62400514 Msa0613580:intron 50.0%
! TCTCCCGCATAGCTTTTTGC+TGG - chr4_2:62400788-62400807 Msa0613580:intron 50.0%
GAGTTGCTAGGCAAGAGCAA+TGG + chr4_2:62401969-62401988 None:intergenic 50.0%
!!! AGGCTAATGTTTTGGCCCAG+TGG + chr4_2:62401995-62402014 None:intergenic 50.0%
GGTGAAAACGTCATGCTGAG+AGG + chr4_2:62403270-62403289 None:intergenic 50.0%
ATCTGTCATGAGACGCCACA+TGG - chr4_2:62403741-62403760 Msa0613580:CDS 50.0%
! GCTTATGGACAAACGGGTTC+AGG - chr4_2:62403921-62403940 Msa0613580:intron 50.0%
CTGGCCTACCCATCATTGTA+TGG + chr4_2:62403953-62403972 None:intergenic 50.0%
!! CCTTTGAGATCTGGAGAGTC+TGG + chr4_2:62403972-62403991 None:intergenic 50.0%
CCAGACTCTCCAGATCTCAA+AGG - chr4_2:62403969-62403988 Msa0613580:intron 50.0%
AGTCTCTTAAAGACCAGGGC+TGG - chr4_2:62404033-62404052 Msa0613580:intron 50.0%
GAGGAGGGAGGAAATCTCAT+CGG + chr4_2:62404337-62404356 None:intergenic 50.0%
GATTTCCTCCCTCCTCCAAA+AGG - chr4_2:62404341-62404360 Msa0613580:CDS 50.0%
!! TGATTTGGGCAGCCTTTTGG+AGG + chr4_2:62404356-62404375 None:intergenic 50.0%
TCCAAAAGGCTGCCCAAATC+AGG - chr4_2:62404355-62404374 Msa0613580:CDS 50.0%
!!! ACCTGATTTGGGCAGCCTTT+TGG + chr4_2:62404359-62404378 None:intergenic 50.0%
TTCCTTCAAACGTTCCCCAG+TGG + chr4_2:62404932-62404951 None:intergenic 50.0%
GGATTGCAGCCATGTCTTGA+AGG - chr4_2:62405680-62405699 Msa0613580:intron 50.0%
TGGCGAGAAGGTAGGGTTTG+CGG + chr4_2:62400168-62400187 None:intergenic 55.0%
GAAGACGATGGCGAGAAGGT+AGG + chr4_2:62400176-62400195 None:intergenic 55.0%
TCAGGAAGACGATGGCGAGA+AGG + chr4_2:62400180-62400199 None:intergenic 55.0%
TGACGGAGTCAGGAAGACGA+TGG + chr4_2:62400188-62400207 None:intergenic 55.0%
GTCTTCCTGACTCCGTCAAC+TGG - chr4_2:62400190-62400209 Msa0613580:exon 55.0%
TCGTACCAGTTGACGGAGTC+AGG + chr4_2:62400198-62400217 None:intergenic 55.0%
!!! TGGAGTGGTTTTGAGGAGGC+CGG + chr4_2:62400324-62400343 None:intergenic 55.0%
TGCCTAGCAACTCTCTCCAC+TGG - chr4_2:62401976-62401995 Msa0613580:intron 55.0%
GCCTAGCAACTCTCTCCACT+GGG - chr4_2:62401977-62401996 Msa0613580:intron 55.0%
GATGATCGCGATCGCCTACA+AGG - chr4_2:62402252-62402271 Msa0613580:intron 55.0%
!! TTCTGGGGCTTCTGGCTAGA+TGG - chr4_2:62402719-62402738 Msa0613580:intron 55.0%
! CTGGTACAGAGTGCCCTTGA+TGG - chr4_2:62403302-62403321 Msa0613580:intron 55.0%
! GAGTGCCCTTGATGGCTACA+AGG - chr4_2:62403310-62403329 Msa0613580:intron 55.0%
! TTTTCTGTGTCTGCGCCCTG+CGG - chr4_2:62403549-62403568 Msa0613580:CDS 55.0%
GACGCCACATGGAAGTGAAG+TGG - chr4_2:62403752-62403771 Msa0613580:CDS 55.0%
!! TTGGGCAGCCTTTTGGAGGA+GGG + chr4_2:62404352-62404371 None:intergenic 55.0%
!! TTTGGGCAGCCTTTTGGAGG+AGG + chr4_2:62404353-62404372 None:intergenic 55.0%
TTTCAAGGAGTGGGGCCACT+GGG - chr4_2:62404914-62404933 Msa0613580:CDS 55.0%
!! TGGGATTGGTGGCTCGGTGA+AGG + chr4_2:62400106-62400125 None:intergenic 60.0%
GAAGGTAGGGTTTGCGGAGG+TGG + chr4_2:62400162-62400181 None:intergenic 60.0%
CGAGAAGGTAGGGTTTGCGG+AGG + chr4_2:62400165-62400184 None:intergenic 60.0%
GCCCAGTGGAGAGAGTTGCT+AGG + chr4_2:62401981-62402000 None:intergenic 60.0%
! AGGCAGAAGTGCAGACCGCA+GGG + chr4_2:62403567-62403586 None:intergenic 60.0%
! AAGGCAGAAGTGCAGACCGC+AGG + chr4_2:62403568-62403587 None:intergenic 60.0%
CTTTCAAGGAGTGGGGCCAC+TGG - chr4_2:62404913-62404932 Msa0613580:CDS 60.0%
TTCAAGGAGTGGGGCCACTG+GGG - chr4_2:62404915-62404934 Msa0613580:CDS 60.0%
GGCCACTGGGGAACGTTTGA+AGG - chr4_2:62404927-62404946 Msa0613580:CDS 60.0%
!! GCTTGGCCGGGGCATTGAGT+TGG - chr4_2:62403075-62403094 Msa0613580:intron 65.0%
!! GGCAGCCTTTTGGAGGAGGG+AGG + chr4_2:62404349-62404368 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 62400083 62405970 62400083 ID=Msa0613580;Name=Msa0613580
chr4_2 mRNA 62400083 62405970 62400083 ID=Msa0613580-mRNA-1;Parent=Msa0613580;Name=Msa0613580-mRNA-1;_AED=0.08;_eAED=0.08;_QI=129|0.93|0.93|1|0.93|0.93|16|120|671
chr4_2 exon 62400083 62400364 62400083 ID=Msa0613580-mRNA-1:exon:17228;Parent=Msa0613580-mRNA-1
chr4_2 exon 62400890 62400994 62400890 ID=Msa0613580-mRNA-1:exon:17227;Parent=Msa0613580-mRNA-1
chr4_2 exon 62401096 62401200 62401096 ID=Msa0613580-mRNA-1:exon:17226;Parent=Msa0613580-mRNA-1
chr4_2 exon 62401280 62401361 62401280 ID=Msa0613580-mRNA-1:exon:17225;Parent=Msa0613580-mRNA-1
chr4_2 exon 62401677 62401897 62401677 ID=Msa0613580-mRNA-1:exon:17224;Parent=Msa0613580-mRNA-1
chr4_2 exon 62401983 62402144 62401983 ID=Msa0613580-mRNA-1:exon:17223;Parent=Msa0613580-mRNA-1
chr4_2 exon 62402722 62402831 62402722 ID=Msa0613580-mRNA-1:exon:17222;Parent=Msa0613580-mRNA-1
chr4_2 exon 62402947 62403079 62402947 ID=Msa0613580-mRNA-1:exon:17221;Parent=Msa0613580-mRNA-1
chr4_2 exon 62403169 62403315 62403169 ID=Msa0613580-mRNA-1:exon:17220;Parent=Msa0613580-mRNA-1
chr4_2 exon 62403498 62403572 62403498 ID=Msa0613580-mRNA-1:exon:17219;Parent=Msa0613580-mRNA-1
chr4_2 exon 62403676 62403864 62403676 ID=Msa0613580-mRNA-1:exon:17218;Parent=Msa0613580-mRNA-1
chr4_2 exon 62404260 62404420 62404260 ID=Msa0613580-mRNA-1:exon:17217;Parent=Msa0613580-mRNA-1
chr4_2 exon 62404876 62404999 62404876 ID=Msa0613580-mRNA-1:exon:17216;Parent=Msa0613580-mRNA-1
chr4_2 exon 62405414 62405608 62405414 ID=Msa0613580-mRNA-1:exon:17215;Parent=Msa0613580-mRNA-1
chr4_2 exon 62405708 62405752 62405708 ID=Msa0613580-mRNA-1:exon:17214;Parent=Msa0613580-mRNA-1
chr4_2 exon 62405842 62405970 62405842 ID=Msa0613580-mRNA-1:exon:17213;Parent=Msa0613580-mRNA-1
chr4_2 five_prime_UTR 62405842 62405970 62405842 ID=Msa0613580-mRNA-1:five_prime_utr;Parent=Msa0613580-mRNA-1
chr4_2 CDS 62405708 62405752 62405708 ID=Msa0613580-mRNA-1:cds;Parent=Msa0613580-mRNA-1
chr4_2 CDS 62405414 62405608 62405414 ID=Msa0613580-mRNA-1:cds;Parent=Msa0613580-mRNA-1
chr4_2 CDS 62404876 62404999 62404876 ID=Msa0613580-mRNA-1:cds;Parent=Msa0613580-mRNA-1
chr4_2 CDS 62404260 62404420 62404260 ID=Msa0613580-mRNA-1:cds;Parent=Msa0613580-mRNA-1
chr4_2 CDS 62403676 62403864 62403676 ID=Msa0613580-mRNA-1:cds;Parent=Msa0613580-mRNA-1
chr4_2 CDS 62403498 62403572 62403498 ID=Msa0613580-mRNA-1:cds;Parent=Msa0613580-mRNA-1
chr4_2 CDS 62403169 62403315 62403169 ID=Msa0613580-mRNA-1:cds;Parent=Msa0613580-mRNA-1
chr4_2 CDS 62402947 62403079 62402947 ID=Msa0613580-mRNA-1:cds;Parent=Msa0613580-mRNA-1
chr4_2 CDS 62402722 62402831 62402722 ID=Msa0613580-mRNA-1:cds;Parent=Msa0613580-mRNA-1
chr4_2 CDS 62401983 62402144 62401983 ID=Msa0613580-mRNA-1:cds;Parent=Msa0613580-mRNA-1
chr4_2 CDS 62401677 62401897 62401677 ID=Msa0613580-mRNA-1:cds;Parent=Msa0613580-mRNA-1
chr4_2 CDS 62401280 62401361 62401280 ID=Msa0613580-mRNA-1:cds;Parent=Msa0613580-mRNA-1
chr4_2 CDS 62401096 62401200 62401096 ID=Msa0613580-mRNA-1:cds;Parent=Msa0613580-mRNA-1
chr4_2 CDS 62400890 62400994 62400890 ID=Msa0613580-mRNA-1:cds;Parent=Msa0613580-mRNA-1
chr4_2 CDS 62400203 62400364 62400203 ID=Msa0613580-mRNA-1:cds;Parent=Msa0613580-mRNA-1
chr4_2 three_prime_UTR 62400083 62400202 62400083 ID=Msa0613580-mRNA-1:three_prime_utr;Parent=Msa0613580-mRNA-1
Gene Sequence

>Msa0613580

ATGGCTTCTCGGAATCAGAACCGGCCTCCTCAAAACCACTCCAATGTTGGATCTGAAGAGATGGAGAGACAAAGAGTGTCTGGTAGAGCTAAAGCTAGAGCGCCGTTAACTGCAATGGTGAACAACGCTACTGCAAGTAATGTAGAGGGAATCGATTCAACCGCAATTGAGTTCACAAAAGATGATATAGAGGCATTGCTTAATGAGAAGATGAAAAAGGGAACTCCTTTTGATAATAAGAAAAAAATGGAGCAGATGGTGGATCTTATTAAGCGGCTTAAGCTTTGTGTTCAATGGTGCGCCAACAAGATTGAAACGCTTCATTCTGAAGTTGAGTCTGCTGTTAAGAAGTGTTCTGATACTGAGATTGAGATGAAAAATAAGACCGAGGAGCTTCAATCAGATCTCAATTCAGCTAACGAGGCTTATAGAAGACTTGAAACAGAGAAATCAATCATTGTTGAGAGCCTTAATGATACAAGAGATCTTAATAAGGAATTGCAGGATCGATTGAAATCTGTTAAAGATTCTCAGAGTGAAGCTATAAAGCATAAAGAAATGTTCCGCGAAGAACTAAAAAAAATTACAGATGATCGCGATCGCCTACAAGGAAAACTAAATGATGTAATGTTAGAACGGGAAAAATACATAAAATTTAAATATGAAACATACTCAAAATTGGATAAATTGGCAAGTAAAACAGAGGCACTTGAGGAGACATGTTCCTCTCAAAAGGAGAAAATAAATATACTGGAGCAAAAGTTACATGCTGAAAGGGAGAAGTTAGAGATGGCTGATTTATCTGCTATGGAAACAAGAGCAACGTTTGAAGAGCAGAAAAGATTCATTCGTAAACTACAAGATCAATTGGCAGATAAAGAATTTCAAGTAGTTGAAGGAGAAAAGCTAAGGAAAAAACTGCACAACACTGTCTTGGAGCTGAAAGGAAATATTCGTGTGTTTTGTCGTGTGCGACCTTTACTACGAGACCGTTCAGAAACGAAAACGGTTGTTTATTACCCTACGTCAATAGAAATGCTTGGCCGGGGCATTGAGTTGGAACAAAATGGACAGAAACAGCTTTTTACATTTGACAAGGTGTTTAATCATGACGCCTCTCAGCATGACGTTTTCACCGAAATATCACAACTGGTACAGAGTGCCCTTGATGGCTACAAGGTATGCATTTTTGCTTATGGACAAACGGGTTCAGGAAAAACCCATACAATGATGGGTAGGCCAGACTCTCCAGATCTCAAAGGGATGATACCACTTTCTTTAGAACAGATATTCCAGACCAGTCAGTCTCTTAAAGACCAGGGCTGGAATTACAAAATGCAGGCATCAGTATTGGAAATATATAATGAGACCATCAAAGATTTGTTATTGTCAAATCGGTCAAGTGGGATTGACCAAACACGAGCAGAAAATAGTGTTCATGGAAAACAGTACACTATTAGACATGACAAAAATGGAAACACACATGTTTTGGACCTCACCATTGTCGATGTTTGTAGTGCCGATGAGATTTCCTCCCTCCTCCAAAAGGCTGCCCAAATCAGGTCAATGGGAAGAACACAAATGAATGAACAATCATCAAGAAGCCACTTTGTTGTTACTTTGCGCATATGTGGTATAAACGAGAACACTGAACAACAAGTACAAGGTGTCTTAAACCTGATTGATTTGGCTGGAAGTGAAAGACTTTCAAGGAGTGGGGCCACTGGGGAACGTTTGAAGGAAACTCAGGCTATCAACCAAAGTCTCTCCTGTTTGAGCAATGTCATATTTGCTTTGGCAAAGAAAGAAGAGCATGTTCCTTTCAGGGATTCAAAACTTACACACCTACTTCAGCCATGTCTTGAAGGGGATTCCAAAACTTTGATGTTTGTCAACATCTCACCTGATCAATCTTCAATTGACGAGTCACTTTGCTCTCTTCGATTTGCGTCTAGAGTCAATGCTGTGAAATTGGGGATTCACAATGTCAGACCTAGACATCCACTCAATGTTTAG

Protein sequence

>Msa0613580

MASRNQNRPPQNHSNVGSEEMERQRVSGRAKARAPLTAMVNNATASNVEGIDSTAIEFTKDDIEALLNEKMKKGTPFDNKKKMEQMVDLIKRLKLCVQWCANKIETLHSEVESAVKKCSDTEIEMKNKTEELQSDLNSANEAYRRLETEKSIIVESLNDTRDLNKELQDRLKSVKDSQSEAIKHKEMFREELKKITDDRDRLQGKLNDVMLEREKYIKFKYETYSKLDKLASKTEALEETCSSQKEKINILEQKLHAEREKLEMADLSAMETRATFEEQKRFIRKLQDQLADKEFQVVEGEKLRKKLHNTVLELKGNIRVFCRVRPLLRDRSETKTVVYYPTSIEMLGRGIELEQNGQKQLFTFDKVFNHDASQHDVFTEISQLVQSALDGYKVCIFAYGQTGSGKTHTMMGRPDSPDLKGMIPLSLEQIFQTSQSLKDQGWNYKMQASVLEIYNETIKDLLLSNRSSGIDQTRAENSVHGKQYTIRHDKNGNTHVLDLTIVDVCSADEISSLLQKAAQIRSMGRTQMNEQSSRSHFVVTLRICGINENTEQQVQGVLNLIDLAGSERLSRSGATGERLKETQAINQSLSCLSNVIFALAKKEEHVPFRDSKLTHLLQPCLEGDSKTLMFVNISPDQSSIDESLCSLRFASRVNAVKLGIHNVRPRHPLNV*