AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0067380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0067380 MtrunA17_Chr1g0171221 99.394 330 2 0 1 330 1 330 0.0 678
Msa0067380 MtrunA17_Chr7g0225281 97.273 330 9 0 1 330 1 330 0.0 670
Msa0067380 MtrunA17_Chr7g0225401 97.273 330 9 0 1 330 1 330 0.0 670
Msa0067380 MtrunA17_Chr8g0362581 92.727 330 19 1 1 330 1 325 0.0 634
Msa0067380 MtrunA17_Chr4g0065771 76.308 325 76 1 6 330 18 341 0.0 532
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0067380 AT3G27060.1 83.735 332 52 2 1 330 1 332 0.0 558
Msa0067380 AT3G23580.1 76.308 325 76 1 6 330 18 341 0.0 518

Find 63 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGAATCGGTCTGGGTTT+GGG 0.237047 1_2:-32380356 None:intergenic
TGCGCATTGGTTGGGATGAA+TGG 0.293239 1_2:+32381059 Msa0067380:CDS
CGCTTCCTTGCGCATTGGTT+GGG 0.302060 1_2:+32381051 Msa0067380:CDS
GTTTGTTGCTGATAGGTTAT+TGG 0.303774 1_2:+32381106 Msa0067380:CDS
AGTGGCGTTCGCCGTCTGTT+AGG 0.311051 1_2:-32380488 None:intergenic
GGGGCAAGAAGGGGTTCTTC+TGG 0.330658 1_2:-32380336 None:intergenic
ATGCAGAATCGGTCTGGGTT+TGG 0.338926 1_2:-32380357 None:intergenic
GCGCATTGGTTGGGATGAAT+GGG 0.350139 1_2:+32381060 Msa0067380:CDS
AAGCTGATTGGGCGATGAAA+TGG 0.358474 1_2:+32380751 Msa0067380:CDS
ACAATTTCTTTCACGCGCTC+TGG 0.374811 1_2:-32380987 None:intergenic
TTTGTTGCTGATAGGTTATT+GGG 0.379609 1_2:+32381107 Msa0067380:CDS
AATCGCTTATATACGTTTCA+AGG 0.387103 1_2:-32380671 None:intergenic
ATGTTCAGAATCCGTTTGAT+TGG 0.390491 1_2:+32381156 Msa0067380:CDS
ACCGTAGAAGGCACGTGCTT+CGG 0.402800 1_2:-32380601 None:intergenic
GTCTGGGTTTGGGGCAAGAA+GGG 0.415976 1_2:-32380346 None:intergenic
GGGAACATGCAGAATCGGTC+TGG 0.418807 1_2:-32380363 None:intergenic
GCGCTTCCTTGCGCATTGGT+TGG 0.429604 1_2:+32381050 Msa0067380:CDS
GATTTCTTTCATGAATCTAC+CGG 0.435670 1_2:-32380571 None:intergenic
GTTGCATTTGCTTGTGTTGA+AGG 0.436600 1_2:+32380807 Msa0067380:CDS
TCAGAATCCGTTTGATTGGA+TGG 0.443597 1_2:+32381160 Msa0067380:CDS
TCTGGGTTTGGGGCAAGAAG+GGG 0.444554 1_2:-32380345 None:intergenic
AGGCACGTGCTTCGGAGACT+TGG 0.444676 1_2:-32380593 None:intergenic
GCCGTCGGAGGCGGCGAAGA+AGG 0.452615 1_2:-32380529 None:intergenic
CTGTTATGAATAGCTTGAAT+GGG 0.453833 1_2:+32381249 Msa0067380:CDS
TCTGTTATGAATAGCTTGAA+TGG 0.458759 1_2:+32381248 Msa0067380:CDS
GAAAATCGCACAGAAACTTC+CGG 0.473049 1_2:-32380841 None:intergenic
GAGGACGATGCCGTCGGAGG+CGG 0.474359 1_2:-32380538 None:intergenic
TGCAATCTGGAAACCGTAGA+AGG 0.475411 1_2:-32380613 None:intergenic
GGCGGTCCAGAATGAGGCTT+CGG 0.476778 1_2:-32380424 None:intergenic
ATGGAATTGATTTCGCTTCA+AGG 0.479094 1_2:+32381179 Msa0067380:CDS
ATCAATTCCATCCAATCAAA+CGG 0.480364 1_2:-32381167 None:intergenic
CGACGCGCTTCCTTGCGCAT+TGG 0.483293 1_2:+32381046 Msa0067380:CDS
GAGCTTATTTCACGTGATGA+AGG 0.484978 1_2:+32380909 Msa0067380:CDS
TCCGAAGCACGTGCCTTCTA+CGG 0.485174 1_2:+32380600 Msa0067380:CDS
GATAGGTTATTGGGTGAGCT+TGG 0.486660 1_2:+32381116 Msa0067380:CDS
GGAACATGCAGAATCGGTCT+GGG 0.489835 1_2:-32380362 None:intergenic
CGCATTGGTTGGGATGAATG+GGG 0.491773 1_2:+32381061 Msa0067380:CDS
ATATTGAGTTTGTTGCTGAT+AGG 0.493329 1_2:+32381099 Msa0067380:CDS
GGAGGAAAGATCGACTTCTT+CGG 0.499480 1_2:-32380445 None:intergenic
GTGATGCTGTTGAAATTGAA+AGG 0.499878 1_2:+32381012 Msa0067380:CDS
AGGGGTTCTTCTGGAAAAGC+AGG 0.505225 1_2:-32380327 None:intergenic
GGGTGAGCTTGGTTGTGAAA+AGG 0.505349 1_2:+32381127 Msa0067380:CDS
GCCTTCTTCGCCGCCTCCGA+CGG 0.505987 1_2:+32380528 Msa0067380:CDS
GGTCTGGGTTTGGGGCAAGA+AGG 0.509820 1_2:-32380347 None:intergenic
TGGAATTGATTTCGCTTCAA+GGG 0.520571 1_2:+32381180 Msa0067380:CDS
GGATTGGGAACATGCAGAAT+CGG 0.521690 1_2:-32380368 None:intergenic
TTCTTCGGCGGTCCAGAATG+AGG 0.524296 1_2:-32380430 None:intergenic
GCAGAATCGGTCTGGGTTTG+GGG 0.524980 1_2:-32380355 None:intergenic
TGAAATAAGCTCGTTTGAGA+AGG 0.538441 1_2:-32380898 None:intergenic
TGATGCTGTTGAAATTGAAA+GGG 0.545948 1_2:+32381013 Msa0067380:CDS
TTTCCTCCGATCTCAAGCAC+TGG 0.566756 1_2:+32380460 Msa0067380:CDS
TTCGAGGACGATGCCGTCGG+AGG 0.583990 1_2:-32380541 None:intergenic
CGAGGACGTGAGAGATGAAG+TGG 0.584744 1_2:-32380506 None:intergenic
TCGTTTGAGAAGGTTAATCC+CGG 0.587906 1_2:-32380888 None:intergenic
CGGAGGCGGCGAAGAAGGCG+AGG 0.590500 1_2:-32380524 None:intergenic
GCATTGGTTGGGATGAATGG+GGG 0.596821 1_2:+32381062 Msa0067380:CDS
ATGAATAGCTTGAATGGGAA+TGG 0.603815 1_2:+32381254 Msa0067380:CDS
TTCATCCCAACCAATGCGCA+AGG 0.604485 1_2:-32381056 None:intergenic
CACTGGCAAAACCTAACAGA+CGG 0.606745 1_2:+32380477 Msa0067380:CDS
TTGCCAGTGCTTGAGATCGG+AGG 0.610798 1_2:-32380463 None:intergenic
ATCGTCCTCGAAAATCTCGC+CGG 0.639774 1_2:+32380552 Msa0067380:CDS
GGAAAGATCGACTTCTTCGG+CGG 0.687608 1_2:-32380442 None:intergenic
GAAGAGAGTACATCTCAGAG+TGG 0.694344 1_2:-32380647 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTTTTGGGTATTGGATT+GGG - chr1_2:32380386-32380405 None:intergenic 30.0%
AATCCAATACCCAAAAATCT+GGG + chr1_2:32380386-32380405 Msa0067380:CDS 30.0%
! TGTACATTTCCCAGATTTTT+GGG - chr1_2:32380398-32380417 None:intergenic 30.0%
! TTGTACATTTCCCAGATTTT+TGG - chr1_2:32380399-32380418 None:intergenic 30.0%
GATTTCTTTCATGAATCTAC+CGG - chr1_2:32380574-32380593 None:intergenic 30.0%
AATCGCTTATATACGTTTCA+AGG - chr1_2:32380674-32380693 None:intergenic 30.0%
!!! ATTTTCTGGTTGAAAAAACG+TGG + chr1_2:32380858-32380877 Msa0067380:CDS 30.0%
TGATGCTGTTGAAATTGAAA+GGG + chr1_2:32381013-32381032 Msa0067380:CDS 30.0%
!! ATATTGAGTTTGTTGCTGAT+AGG + chr1_2:32381099-32381118 Msa0067380:CDS 30.0%
TTTGTTGCTGATAGGTTATT+GGG + chr1_2:32381107-32381126 Msa0067380:CDS 30.0%
ATCAATTCCATCCAATCAAA+CGG - chr1_2:32381170-32381189 None:intergenic 30.0%
TCTGTTATGAATAGCTTGAA+TGG + chr1_2:32381248-32381267 Msa0067380:CDS 30.0%
CTGTTATGAATAGCTTGAAT+GGG + chr1_2:32381249-32381268 Msa0067380:CDS 30.0%
!!! AGATTTTTGGGTATTGGATT+GGG - chr1_2:32380386-32380405 None:intergenic 30.0%
AATCCAATACCCAAAAATCT+GGG + chr1_2:32380386-32380405 Msa0067380:CDS 30.0%
! TGTACATTTCCCAGATTTTT+GGG - chr1_2:32380398-32380417 None:intergenic 30.0%
! TTGTACATTTCCCAGATTTT+TGG - chr1_2:32380399-32380418 None:intergenic 30.0%
GATTTCTTTCATGAATCTAC+CGG - chr1_2:32380574-32380593 None:intergenic 30.0%
AATCGCTTATATACGTTTCA+AGG - chr1_2:32380674-32380693 None:intergenic 30.0%
!!! ATTTTCTGGTTGAAAAAACG+TGG + chr1_2:32380858-32380877 Msa0067380:CDS 30.0%
TGATGCTGTTGAAATTGAAA+GGG + chr1_2:32381013-32381032 Msa0067380:CDS 30.0%
!! ATATTGAGTTTGTTGCTGAT+AGG + chr1_2:32381099-32381118 Msa0067380:CDS 30.0%
TTTGTTGCTGATAGGTTATT+GGG + chr1_2:32381107-32381126 Msa0067380:CDS 30.0%
ATCAATTCCATCCAATCAAA+CGG - chr1_2:32381170-32381189 None:intergenic 30.0%
TCTGTTATGAATAGCTTGAA+TGG + chr1_2:32381248-32381267 Msa0067380:CDS 30.0%
CTGTTATGAATAGCTTGAAT+GGG + chr1_2:32381249-32381268 Msa0067380:CDS 30.0%
!!! CAGATTTTTGGGTATTGGAT+TGG - chr1_2:32380387-32380406 None:intergenic 35.0%
CAATCCAATACCCAAAAATC+TGG + chr1_2:32380385-32380404 Msa0067380:CDS 35.0%
!!! TTTCCCAGATTTTTGGGTAT+TGG - chr1_2:32380392-32380411 None:intergenic 35.0%
TATCGCGAAAAAAGCTGATT+GGG + chr1_2:32380740-32380759 Msa0067380:CDS 35.0%
! GTTGAAGGAATCTTTTTCTC+CGG + chr1_2:32380822-32380841 Msa0067380:CDS 35.0%
GAAAAAACGTGGTTTAATGC+CGG + chr1_2:32380869-32380888 Msa0067380:CDS 35.0%
AAAAAACGTGGTTTAATGCC+GGG + chr1_2:32380870-32380889 Msa0067380:CDS 35.0%
TGAAATAAGCTCGTTTGAGA+AGG - chr1_2:32380901-32380920 None:intergenic 35.0%
GTGATGCTGTTGAAATTGAA+AGG + chr1_2:32381012-32381031 Msa0067380:CDS 35.0%
! GTTTGTTGCTGATAGGTTAT+TGG + chr1_2:32381106-32381125 Msa0067380:CDS 35.0%
ATGTTCAGAATCCGTTTGAT+TGG + chr1_2:32381156-32381175 Msa0067380:CDS 35.0%
! ATGGAATTGATTTCGCTTCA+AGG + chr1_2:32381179-32381198 Msa0067380:CDS 35.0%
! TGGAATTGATTTCGCTTCAA+GGG + chr1_2:32381180-32381199 Msa0067380:CDS 35.0%
AACGCGCTTCTCAAAAAAAT+TGG - chr1_2:32381210-32381229 None:intergenic 35.0%
!!! AATTTTTTTGAGAAGCGCGT+TGG + chr1_2:32381209-32381228 Msa0067380:CDS 35.0%
!!! ATTTTTTTGAGAAGCGCGTT+GGG + chr1_2:32381210-32381229 Msa0067380:CDS 35.0%
ATGAATAGCTTGAATGGGAA+TGG + chr1_2:32381254-32381273 Msa0067380:CDS 35.0%
!!! TGCTGATTTTTGCTTCAAGT+TGG + chr1_2:32381280-32381299 Msa0067380:CDS 35.0%
!!! CAGATTTTTGGGTATTGGAT+TGG - chr1_2:32380387-32380406 None:intergenic 35.0%
CAATCCAATACCCAAAAATC+TGG + chr1_2:32380385-32380404 Msa0067380:CDS 35.0%
!!! TTTCCCAGATTTTTGGGTAT+TGG - chr1_2:32380392-32380411 None:intergenic 35.0%
TATCGCGAAAAAAGCTGATT+GGG + chr1_2:32380740-32380759 Msa0067380:CDS 35.0%
! GTTGAAGGAATCTTTTTCTC+CGG + chr1_2:32380822-32380841 Msa0067380:CDS 35.0%
GAAAAAACGTGGTTTAATGC+CGG + chr1_2:32380869-32380888 Msa0067380:CDS 35.0%
AAAAAACGTGGTTTAATGCC+GGG + chr1_2:32380870-32380889 Msa0067380:CDS 35.0%
TGAAATAAGCTCGTTTGAGA+AGG - chr1_2:32380901-32380920 None:intergenic 35.0%
GTGATGCTGTTGAAATTGAA+AGG + chr1_2:32381012-32381031 Msa0067380:CDS 35.0%
! GTTTGTTGCTGATAGGTTAT+TGG + chr1_2:32381106-32381125 Msa0067380:CDS 35.0%
ATGTTCAGAATCCGTTTGAT+TGG + chr1_2:32381156-32381175 Msa0067380:CDS 35.0%
! ATGGAATTGATTTCGCTTCA+AGG + chr1_2:32381179-32381198 Msa0067380:CDS 35.0%
! TGGAATTGATTTCGCTTCAA+GGG + chr1_2:32381180-32381199 Msa0067380:CDS 35.0%
AACGCGCTTCTCAAAAAAAT+TGG - chr1_2:32381210-32381229 None:intergenic 35.0%
!!! AATTTTTTTGAGAAGCGCGT+TGG + chr1_2:32381209-32381228 Msa0067380:CDS 35.0%
!!! ATTTTTTTGAGAAGCGCGTT+GGG + chr1_2:32381210-32381229 Msa0067380:CDS 35.0%
ATGAATAGCTTGAATGGGAA+TGG + chr1_2:32381254-32381273 Msa0067380:CDS 35.0%
!!! TGCTGATTTTTGCTTCAAGT+TGG + chr1_2:32381280-32381299 Msa0067380:CDS 35.0%
! GGATGTTTTCGATTGCAATC+TGG - chr1_2:32380629-32380648 None:intergenic 40.0%
!!! TCAGCTTTTTTCGCGATACA+TGG - chr1_2:32380738-32380757 None:intergenic 40.0%
GTATCGCGAAAAAAGCTGAT+TGG + chr1_2:32380739-32380758 Msa0067380:CDS 40.0%
GTTGCATTTGCTTGTGTTGA+AGG + chr1_2:32380807-32380826 Msa0067380:CDS 40.0%
GAAAATCGCACAGAAACTTC+CGG - chr1_2:32380844-32380863 None:intergenic 40.0%
! GAAGTTTCTGTGCGATTTTC+TGG + chr1_2:32380844-32380863 Msa0067380:CDS 40.0%
TCGTTTGAGAAGGTTAATCC+CGG - chr1_2:32380891-32380910 None:intergenic 40.0%
GAGCTTATTTCACGTGATGA+AGG + chr1_2:32380909-32380928 Msa0067380:CDS 40.0%
TCAGAATCCGTTTGATTGGA+TGG + chr1_2:32381160-32381179 Msa0067380:CDS 40.0%
!!! TTTTTTTGAGAAGCGCGTTG+GGG + chr1_2:32381211-32381230 Msa0067380:CDS 40.0%
! GGATGTTTTCGATTGCAATC+TGG - chr1_2:32380629-32380648 None:intergenic 40.0%
!!! TCAGCTTTTTTCGCGATACA+TGG - chr1_2:32380738-32380757 None:intergenic 40.0%
GTATCGCGAAAAAAGCTGAT+TGG + chr1_2:32380739-32380758 Msa0067380:CDS 40.0%
GTTGCATTTGCTTGTGTTGA+AGG + chr1_2:32380807-32380826 Msa0067380:CDS 40.0%
GAAAATCGCACAGAAACTTC+CGG - chr1_2:32380844-32380863 None:intergenic 40.0%
! GAAGTTTCTGTGCGATTTTC+TGG + chr1_2:32380844-32380863 Msa0067380:CDS 40.0%
TCGTTTGAGAAGGTTAATCC+CGG - chr1_2:32380891-32380910 None:intergenic 40.0%
GAGCTTATTTCACGTGATGA+AGG + chr1_2:32380909-32380928 Msa0067380:CDS 40.0%
TCAGAATCCGTTTGATTGGA+TGG + chr1_2:32381160-32381179 Msa0067380:CDS 40.0%
!!! TTTTTTTGAGAAGCGCGTTG+GGG + chr1_2:32381211-32381230 Msa0067380:CDS 40.0%
GGATTGGGAACATGCAGAAT+CGG - chr1_2:32380371-32380390 None:intergenic 45.0%
AAAAAGCCGAAGCCTCATTC+TGG + chr1_2:32380418-32380437 Msa0067380:CDS 45.0%
! GGAGGAAAGATCGACTTCTT+CGG - chr1_2:32380448-32380467 None:intergenic 45.0%
! GTTTTGCCAGTGCTTGAGAT+CGG - chr1_2:32380469-32380488 None:intergenic 45.0%
CACTGGCAAAACCTAACAGA+CGG + chr1_2:32380477-32380496 Msa0067380:CDS 45.0%
TGCAATCTGGAAACCGTAGA+AGG - chr1_2:32380616-32380635 None:intergenic 45.0%
! GAAGAGAGTACATCTCAGAG+TGG - chr1_2:32380650-32380669 None:intergenic 45.0%
AAGCTGATTGGGCGATGAAA+TGG + chr1_2:32380751-32380770 Msa0067380:CDS 45.0%
ACAATTTCTTTCACGCGCTC+TGG - chr1_2:32380990-32381009 None:intergenic 45.0%
GATAGGTTATTGGGTGAGCT+TGG + chr1_2:32381116-32381135 Msa0067380:CDS 45.0%
GGATTGGGAACATGCAGAAT+CGG - chr1_2:32380371-32380390 None:intergenic 45.0%
AAAAAGCCGAAGCCTCATTC+TGG + chr1_2:32380418-32380437 Msa0067380:CDS 45.0%
! GGAGGAAAGATCGACTTCTT+CGG - chr1_2:32380448-32380467 None:intergenic 45.0%
! GTTTTGCCAGTGCTTGAGAT+CGG - chr1_2:32380469-32380488 None:intergenic 45.0%
CACTGGCAAAACCTAACAGA+CGG + chr1_2:32380477-32380496 Msa0067380:CDS 45.0%
TGCAATCTGGAAACCGTAGA+AGG - chr1_2:32380616-32380635 None:intergenic 45.0%
! GAAGAGAGTACATCTCAGAG+TGG - chr1_2:32380650-32380669 None:intergenic 45.0%
AAGCTGATTGGGCGATGAAA+TGG + chr1_2:32380751-32380770 Msa0067380:CDS 45.0%
ACAATTTCTTTCACGCGCTC+TGG - chr1_2:32380990-32381009 None:intergenic 45.0%
GATAGGTTATTGGGTGAGCT+TGG + chr1_2:32381116-32381135 Msa0067380:CDS 45.0%
! AGGGGTTCTTCTGGAAAAGC+AGG - chr1_2:32380330-32380349 None:intergenic 50.0%
TGCAGAATCGGTCTGGGTTT+GGG - chr1_2:32380359-32380378 None:intergenic 50.0%
ATGCAGAATCGGTCTGGGTT+TGG - chr1_2:32380360-32380379 None:intergenic 50.0%
GGAACATGCAGAATCGGTCT+GGG - chr1_2:32380365-32380384 None:intergenic 50.0%
! GGAAAGATCGACTTCTTCGG+CGG - chr1_2:32380445-32380464 None:intergenic 50.0%
TTTCCTCCGATCTCAAGCAC+TGG + chr1_2:32380460-32380479 Msa0067380:CDS 50.0%
!! ATTTTCGAGGACGATGCCGT+CGG - chr1_2:32380547-32380566 None:intergenic 50.0%
ATCGTCCTCGAAAATCTCGC+CGG + chr1_2:32380552-32380571 Msa0067380:CDS 50.0%
! ATCTACCGGCGAGATTTTCG+AGG - chr1_2:32380560-32380579 None:intergenic 50.0%
TTCATCCCAACCAATGCGCA+AGG - chr1_2:32381059-32381078 None:intergenic 50.0%
!! TGCGCATTGGTTGGGATGAA+TGG + chr1_2:32381059-32381078 Msa0067380:CDS 50.0%
!! GCGCATTGGTTGGGATGAAT+GGG + chr1_2:32381060-32381079 Msa0067380:CDS 50.0%
!! CGCATTGGTTGGGATGAATG+GGG + chr1_2:32381061-32381080 Msa0067380:CDS 50.0%
!! GCATTGGTTGGGATGAATGG+GGG + chr1_2:32381062-32381081 Msa0067380:CDS 50.0%
GGGTGAGCTTGGTTGTGAAA+AGG + chr1_2:32381127-32381146 Msa0067380:CDS 50.0%
! AGGGGTTCTTCTGGAAAAGC+AGG - chr1_2:32380330-32380349 None:intergenic 50.0%
TGCAGAATCGGTCTGGGTTT+GGG - chr1_2:32380359-32380378 None:intergenic 50.0%
ATGCAGAATCGGTCTGGGTT+TGG - chr1_2:32380360-32380379 None:intergenic 50.0%
GGAACATGCAGAATCGGTCT+GGG - chr1_2:32380365-32380384 None:intergenic 50.0%
! GGAAAGATCGACTTCTTCGG+CGG - chr1_2:32380445-32380464 None:intergenic 50.0%
TTTCCTCCGATCTCAAGCAC+TGG + chr1_2:32380460-32380479 Msa0067380:CDS 50.0%
!! ATTTTCGAGGACGATGCCGT+CGG - chr1_2:32380547-32380566 None:intergenic 50.0%
ATCGTCCTCGAAAATCTCGC+CGG + chr1_2:32380552-32380571 Msa0067380:CDS 50.0%
! ATCTACCGGCGAGATTTTCG+AGG - chr1_2:32380560-32380579 None:intergenic 50.0%
TTCATCCCAACCAATGCGCA+AGG - chr1_2:32381059-32381078 None:intergenic 50.0%
!! TGCGCATTGGTTGGGATGAA+TGG + chr1_2:32381059-32381078 Msa0067380:CDS 50.0%
!! GCGCATTGGTTGGGATGAAT+GGG + chr1_2:32381060-32381079 Msa0067380:CDS 50.0%
!! CGCATTGGTTGGGATGAATG+GGG + chr1_2:32381061-32381080 Msa0067380:CDS 50.0%
!! GCATTGGTTGGGATGAATGG+GGG + chr1_2:32381062-32381081 Msa0067380:CDS 50.0%
GGGTGAGCTTGGTTGTGAAA+AGG + chr1_2:32381127-32381146 Msa0067380:CDS 50.0%
! TCTGGGTTTGGGGCAAGAAG+GGG - chr1_2:32380348-32380367 None:intergenic 55.0%
! GTCTGGGTTTGGGGCAAGAA+GGG - chr1_2:32380349-32380368 None:intergenic 55.0%
GCAGAATCGGTCTGGGTTTG+GGG - chr1_2:32380358-32380377 None:intergenic 55.0%
GGGAACATGCAGAATCGGTC+TGG - chr1_2:32380366-32380385 None:intergenic 55.0%
TTCTTCGGCGGTCCAGAATG+AGG - chr1_2:32380433-32380452 None:intergenic 55.0%
TTGCCAGTGCTTGAGATCGG+AGG - chr1_2:32380466-32380485 None:intergenic 55.0%
CGAGGACGTGAGAGATGAAG+TGG - chr1_2:32380509-32380528 None:intergenic 55.0%
TCCGAAGCACGTGCCTTCTA+CGG + chr1_2:32380600-32380619 Msa0067380:CDS 55.0%
! ACCGTAGAAGGCACGTGCTT+CGG - chr1_2:32380604-32380623 None:intergenic 55.0%
!! CGCTTCCTTGCGCATTGGTT+GGG + chr1_2:32381051-32381070 Msa0067380:CDS 55.0%
! TCTGGGTTTGGGGCAAGAAG+GGG - chr1_2:32380348-32380367 None:intergenic 55.0%
! GTCTGGGTTTGGGGCAAGAA+GGG - chr1_2:32380349-32380368 None:intergenic 55.0%
GCAGAATCGGTCTGGGTTTG+GGG - chr1_2:32380358-32380377 None:intergenic 55.0%
GGGAACATGCAGAATCGGTC+TGG - chr1_2:32380366-32380385 None:intergenic 55.0%
TTCTTCGGCGGTCCAGAATG+AGG - chr1_2:32380433-32380452 None:intergenic 55.0%
TTGCCAGTGCTTGAGATCGG+AGG - chr1_2:32380466-32380485 None:intergenic 55.0%
CGAGGACGTGAGAGATGAAG+TGG - chr1_2:32380509-32380528 None:intergenic 55.0%
TCCGAAGCACGTGCCTTCTA+CGG + chr1_2:32380600-32380619 Msa0067380:CDS 55.0%
! ACCGTAGAAGGCACGTGCTT+CGG - chr1_2:32380604-32380623 None:intergenic 55.0%
!! CGCTTCCTTGCGCATTGGTT+GGG + chr1_2:32381051-32381070 Msa0067380:CDS 55.0%
GGGGCAAGAAGGGGTTCTTC+TGG - chr1_2:32380339-32380358 None:intergenic 60.0%
! GGTCTGGGTTTGGGGCAAGA+AGG - chr1_2:32380350-32380369 None:intergenic 60.0%
GGCGGTCCAGAATGAGGCTT+CGG - chr1_2:32380427-32380446 None:intergenic 60.0%
AGTGGCGTTCGCCGTCTGTT+AGG - chr1_2:32380491-32380510 None:intergenic 60.0%
AGGCACGTGCTTCGGAGACT+TGG - chr1_2:32380596-32380615 None:intergenic 60.0%
! GCGCTTCCTTGCGCATTGGT+TGG + chr1_2:32381050-32381069 Msa0067380:CDS 60.0%
GGGGCAAGAAGGGGTTCTTC+TGG - chr1_2:32380339-32380358 None:intergenic 60.0%
! GGTCTGGGTTTGGGGCAAGA+AGG - chr1_2:32380350-32380369 None:intergenic 60.0%
GGCGGTCCAGAATGAGGCTT+CGG - chr1_2:32380427-32380446 None:intergenic 60.0%
AGTGGCGTTCGCCGTCTGTT+AGG - chr1_2:32380491-32380510 None:intergenic 60.0%
AGGCACGTGCTTCGGAGACT+TGG - chr1_2:32380596-32380615 None:intergenic 60.0%
! GCGCTTCCTTGCGCATTGGT+TGG + chr1_2:32381050-32381069 Msa0067380:CDS 60.0%
TTCGAGGACGATGCCGTCGG+AGG - chr1_2:32380544-32380563 None:intergenic 65.0%
CGACGCGCTTCCTTGCGCAT+TGG + chr1_2:32381046-32381065 Msa0067380:CDS 65.0%
TTCGAGGACGATGCCGTCGG+AGG - chr1_2:32380544-32380563 None:intergenic 65.0%
CGACGCGCTTCCTTGCGCAT+TGG + chr1_2:32381046-32381065 Msa0067380:CDS 65.0%
GCCTTCTTCGCCGCCTCCGA+CGG + chr1_2:32380528-32380547 Msa0067380:CDS 70.0%
GAGGACGATGCCGTCGGAGG+CGG - chr1_2:32380541-32380560 None:intergenic 70.0%
GCCTTCTTCGCCGCCTCCGA+CGG + chr1_2:32380528-32380547 Msa0067380:CDS 70.0%
GAGGACGATGCCGTCGGAGG+CGG - chr1_2:32380541-32380560 None:intergenic 70.0%
CGGAGGCGGCGAAGAAGGCG+AGG - chr1_2:32380527-32380546 None:intergenic 75.0%
GCCGTCGGAGGCGGCGAAGA+AGG - chr1_2:32380532-32380551 None:intergenic 75.0%
CGGAGGCGGCGAAGAAGGCG+AGG - chr1_2:32380527-32380546 None:intergenic 75.0%
GCCGTCGGAGGCGGCGAAGA+AGG - chr1_2:32380532-32380551 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 32380324 32381316 32380324 ID=Msa0067380;Name=Msa0067380
chr1_2 mRNA 32380324 32381316 32380324 ID=Msa0067380-mRNA-1;Parent=Msa0067380;Name=Msa0067380-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|-1|0|1|-1|1|1|0|330
chr1_2 exon 32380324 32381316 32380324 ID=Msa0067380-mRNA-1:exon:10567;Parent=Msa0067380-mRNA-1
chr1_2 CDS 32380324 32381316 32380324 ID=Msa0067380-mRNA-1:cds;Parent=Msa0067380-mRNA-1
Gene Sequence

>Msa0067380

ATGCCTGCTTTTCCAGAAGAACCCCTTCTTGCCCCAAACCCAGACCGATTCTGCATGTTCCCAATCCAATACCCAAAAATCTGGGAAATGTACAAAAAAGCCGAAGCCTCATTCTGGACCGCCGAAGAAGTCGATCTTTCCTCCGATCTCAAGCACTGGCAAAACCTAACAGACGGCGAACGCCACTTCATCTCTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAAAATCTCGCCGGTAGATTCATGAAAGAAATCCAAGTCTCCGAAGCACGTGCCTTCTACGGTTTCCAGATTGCAATCGAAAACATCCACTCTGAGATGTACTCTCTTCTCCTTGAAACGTATATAAGCGATTCTGCTGAAAAGAATCGCTTATTTCATGCAATTGAAACAATTCCATGTATCGCGAAAAAAGCTGATTGGGCGATGAAATGGATCGATTCAAGCGATTCTTTTGCAGAAAGAATCGTTGCATTTGCTTGTGTTGAAGGAATCTTTTTCTCCGGAAGTTTCTGTGCGATTTTCTGGTTGAAAAAACGTGGTTTAATGCCGGGATTAACCTTCTCAAACGAGCTTATTTCACGTGATGAAGGATTACACTGTGATTTCGCTTGTTTGTTATACTCACTTCTACGCAAGAAGCTAAGTCCAGAGCGCGTGAAAGAAATTGTTTGTGATGCTGTTGAAATTGAAAGGGAGTTTGTGTGCGACGCGCTTCCTTGCGCATTGGTTGGGATGAATGGGGGTTTGATGAGTACGTATATTGAGTTTGTTGCTGATAGGTTATTGGGTGAGCTTGGTTGTGAAAAGGTTTACAATGTTCAGAATCCGTTTGATTGGATGGAATTGATTTCGCTTCAAGGGAAAACCAATTTTTTTGAGAAGCGCGTTGGGGAGTATCAGAAAGCTTCTGTTATGAATAGCTTGAATGGGAATGGTGCTGCTGATTTTTGCTTCAAGTTGGATGAAGATTTTTAG

Protein sequence

>Msa0067380

MPAFPEEPLLAPNPDRFCMFPIQYPKIWEMYKKAEASFWTAEEVDLSSDLKHWQNLTDGERHFISHVLAFFAASDGIVLENLAGRFMKEIQVSEARAFYGFQIAIENIHSEMYSLLLETYISDSAEKNRLFHAIETIPCIAKKADWAMKWIDSSDSFAERIVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKKLSPERVKEIVCDAVEIEREFVCDALPCALVGMNGGLMSTYIEFVADRLLGELGCEKVYNVQNPFDWMELISLQGKTNFFEKRVGEYQKASVMNSLNGNGAADFCFKLDEDF*