AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0515680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515680 MtrunA17_Chr3g0125291 98.598 214 3 0 1 214 1 214 1.03e-161 444
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515680 AT4G37925.1 58.411 214 75 5 1 208 1 206 5.09e-82 243

Find 69 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCAAAAGCACTGGTTTC+TGG 0.141947 3_4:+66998794 None:intergenic
CTTGGTCTATTCTTACTTTC+AGG 0.183071 3_4:-66998699 Msa0515680:CDS
ATCATATGCATGGGTAAAAT+TGG 0.201705 3_4:-66999318 Msa0515680:five_prime_UTR
CCAAATTATCCATACAAAAT+TGG 0.229236 3_4:-66999084 Msa0515680:CDS
CATCAGTAGGATCAAGAATA+AGG 0.246691 3_4:+66998750 None:intergenic
AAGATTTCTTACATAATAAC+TGG 0.309289 3_4:+66999241 None:intergenic
CAAGGCATGACCAGGGAATA+TGG 0.310643 3_4:-66998875 Msa0515680:CDS
AAGCAATATACAAGTTAATA+AGG 0.311095 3_4:-66999194 Msa0515680:five_prime_UTR
TAGACCAAGTTGCAAGTATC+AGG 0.336990 3_4:+66998713 None:intergenic
ACCTGAGGTTCAACTGGCCT+TGG 0.343629 3_4:+66998911 None:intergenic
TCTCAAGTACTAGCATCTTC+AGG 0.350319 3_4:+66997929 None:intergenic
GCATGGGTAAAATTGGAAAT+TGG 0.369967 3_4:-66999311 Msa0515680:five_prime_UTR
GAATACACACTTCGGTTGAT+TGG 0.380394 3_4:-66998079 Msa0515680:CDS
TGTGGCCATGTTTAATTTAG+TGG 0.390930 3_4:+66999129 None:intergenic
TTCTTACTTTCAGGAGCTTG+TGG 0.404103 3_4:-66998690 Msa0515680:CDS
ACAATCACCTGAGGTTCAAC+TGG 0.408756 3_4:+66998905 None:intergenic
TCAACAACAATCTGATGTTA+AGG 0.415802 3_4:-66999008 Msa0515680:CDS
TAGCTTCACTCCTTCTCCTA+TGG 0.430313 3_4:+66999216 None:intergenic
ATAAGAAAGTTGTTATATGA+TGG 0.433915 3_4:-66998037 Msa0515680:CDS
CGAAGTGTGTATTCATTCAA+TGG 0.452108 3_4:+66998088 None:intergenic
GGCCACAAGTTGTTCCTACA+TGG 0.484273 3_4:-66999113 Msa0515680:CDS
GCCCTCATGTAAGTACTTGT+TGG 0.487670 3_4:-66999172 Msa0515680:five_prime_UTR
CTGAGTTTGATCAAAAGCAC+TGG 0.490193 3_4:+66998787 None:intergenic
TAAGAAAGTTGTTATATGAT+GGG 0.494772 3_4:-66998036 Msa0515680:CDS
ATCAGTAGGATCAAGAATAA+GGG 0.496505 3_4:+66998751 None:intergenic
CAGGTGATTGTAAAAGATCA+AGG 0.496992 3_4:-66998893 Msa0515680:CDS
TGTGGTCACAGAAGAAATAC+AGG 0.497348 3_4:+66999275 None:intergenic
TCATAATAAAATCATATGCA+TGG 0.499203 3_4:-66999328 Msa0515680:five_prime_UTR
CTTATATTGAGCATTTGCAT+TGG 0.500715 3_4:+66997738 None:intergenic
AATCAACAAATTAATCCAAA+AGG 0.501012 3_4:-66998941 Msa0515680:CDS
ACCAAGGCCAGTTGAACCTC+AGG 0.504576 3_4:-66998912 Msa0515680:CDS
TAACTGGAGGGAAATGTTTG+TGG 0.515918 3_4:+66999257 None:intergenic
TGCAAATGCTCAATATAAGC+AGG 0.519168 3_4:-66997734 Msa0515680:three_prime_UTR
TAAAAGATCAAGGCATGACC+AGG 0.521510 3_4:-66998883 Msa0515680:CDS
TCAAGTATAATATGAATGCA+AGG 0.530324 3_4:-66998009 Msa0515680:CDS
CATAATAAAATCATATGCAT+GGG 0.541938 3_4:-66999327 Msa0515680:five_prime_UTR
GAAACAGACGGTGTGAAAGT+AGG 0.553779 3_4:-66998986 Msa0515680:CDS
CCACTGTCCTCCATATTCCC+TGG 0.567133 3_4:+66998865 None:intergenic
AGGGTTCTGAATTTCAGCAT+GGG 0.568039 3_4:-66997989 Msa0515680:CDS
CAAGTATAATATGAATGCAA+GGG 0.571561 3_4:-66998008 Msa0515680:CDS
GAAATCTTATCCATAGGAGA+AGG 0.573086 3_4:-66999226 Msa0515680:five_prime_UTR
ATCCTACTGATGAGTTTGTG+TGG 0.588183 3_4:-66998739 Msa0515680:CDS
TTATCCATACAAAATTGGAC+AGG 0.589821 3_4:-66999079 Msa0515680:CDS
ATGTAAGAAATCTTATCCAT+AGG 0.591103 3_4:-66999232 Msa0515680:five_prime_UTR
AAGGGTTCTGAATTTCAGCA+TGG 0.591866 3_4:-66997990 Msa0515680:CDS
AAGAAAGTTGTTATATGATG+GGG 0.592164 3_4:-66998035 Msa0515680:CDS
GAATCCTGATACTTGCAACT+TGG 0.593694 3_4:-66998717 Msa0515680:CDS
GGAGCTTGTGGATCACTATG+AGG 0.594812 3_4:-66998678 Msa0515680:intron
TCCATACAAAATTGGACAGG+AGG 0.595865 3_4:-66999076 Msa0515680:CDS
AAGTACTAGCATCTTCAGGT+TGG 0.600680 3_4:+66997933 None:intergenic
TTTCTTACATAATAACTGGA+GGG 0.602486 3_4:+66999245 None:intergenic
CATTGAATGAATACACACTT+CGG 0.613957 3_4:-66998087 Msa0515680:CDS
ATTTCTTACATAATAACTGG+AGG 0.614631 3_4:+66999244 None:intergenic
GGGTTCTGAATTTCAGCATG+GGG 0.628137 3_4:-66997988 Msa0515680:CDS
GGCCAACAAGTACTTACATG+AGG 0.640965 3_4:+66999170 None:intergenic
TTCCACACAAACTCATCAGT+AGG 0.644633 3_4:+66998737 None:intergenic
AACCATGTAGGAACAACTTG+TGG 0.645922 3_4:+66999111 None:intergenic
GCCAACAAGTACTTACATGA+GGG 0.655783 3_4:+66999171 None:intergenic
TTGTTGTTGAACATGATCCG+TGG 0.660958 3_4:+66997962 None:intergenic
ATCCAAAAGGAACAAAACCA+AGG 0.667834 3_4:-66998928 Msa0515680:CDS
TAATTTGGTAGAAACCATGT+AGG 0.670055 3_4:+66999099 None:intergenic
ATTTCAGCATGGGGAAACCA+CGG 0.674315 3_4:-66997979 Msa0515680:CDS
AAACACCACTAAATTAAACA+TGG 0.676768 3_4:-66999134 Msa0515680:exon
ATAGATCCTCACATGTCGCG+TGG 0.684738 3_4:+66998832 None:intergenic
TCTGATGTTAAGGAAACAGA+CGG 0.690604 3_4:-66998998 Msa0515680:CDS
AAAAGATCAAGGCATGACCA+GGG 0.707335 3_4:-66998882 Msa0515680:CDS
CCAGGGAATATGGAGGACAG+TGG 0.721629 3_4:-66998865 Msa0515680:CDS
GCTGTGCCACGCGACATGTG+AGG 0.722585 3_4:-66998838 Msa0515680:CDS
GGCATGACCAGGGAATATGG+AGG 0.766490 3_4:-66998872 Msa0515680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAATAAATATCAATACA+AGG - chr3_4:66998501-66998520 Msa0515680:intron 15.0%
!! CAAAAATAAATATCAATACA+AGG - chr3_4:66998501-66998520 Msa0515680:intron 15.0%
!! TCATAATAAAATCATATGCA+TGG - chr3_4:66997727-66997746 Msa0515680:three_prime_UTR 20.0%
!! CATAATAAAATCATATGCAT+GGG - chr3_4:66997728-66997747 Msa0515680:three_prime_UTR 20.0%
!! AAGATTTCTTACATAATAAC+TGG + chr3_4:66997817-66997836 None:intergenic 20.0%
!! AAGCAATATACAAGTTAATA+AGG - chr3_4:66997861-66997880 Msa0515680:three_prime_UTR 20.0%
!! AATCAACAAATTAATCCAAA+AGG - chr3_4:66998114-66998133 Msa0515680:intron 20.0%
!! TGTGAATTTGATTATGTTTA+AGG + chr3_4:66998409-66998428 None:intergenic 20.0%
!! ATAGTCTATGCTTAAATTTA+AGG - chr3_4:66998531-66998550 Msa0515680:intron 20.0%
!! ATACAATTCTAACACTTAAT+TGG + chr3_4:66998829-66998848 None:intergenic 20.0%
!!! CTTTTTGATAATTGAAAACA+GGG - chr3_4:66998940-66998959 Msa0515680:CDS 20.0%
!! ATAAGAAAGTTGTTATATGA+TGG - chr3_4:66999018-66999037 Msa0515680:CDS 20.0%
!! TAAGAAAGTTGTTATATGAT+GGG - chr3_4:66999019-66999038 Msa0515680:CDS 20.0%
!! TCATAATAAAATCATATGCA+TGG - chr3_4:66997727-66997746 Msa0515680:three_prime_UTR 20.0%
!! CATAATAAAATCATATGCAT+GGG - chr3_4:66997728-66997747 Msa0515680:three_prime_UTR 20.0%
!! AAGATTTCTTACATAATAAC+TGG + chr3_4:66997817-66997836 None:intergenic 20.0%
!! AAGCAATATACAAGTTAATA+AGG - chr3_4:66997861-66997880 Msa0515680:three_prime_UTR 20.0%
!! AATCAACAAATTAATCCAAA+AGG - chr3_4:66998114-66998133 Msa0515680:intron 20.0%
!! TGTGAATTTGATTATGTTTA+AGG + chr3_4:66998409-66998428 None:intergenic 20.0%
!! ATAGTCTATGCTTAAATTTA+AGG - chr3_4:66998531-66998550 Msa0515680:intron 20.0%
!! ATACAATTCTAACACTTAAT+TGG + chr3_4:66998829-66998848 None:intergenic 20.0%
!!! CTTTTTGATAATTGAAAACA+GGG - chr3_4:66998940-66998959 Msa0515680:CDS 20.0%
!! ATAAGAAAGTTGTTATATGA+TGG - chr3_4:66999018-66999037 Msa0515680:CDS 20.0%
!! TAAGAAAGTTGTTATATGAT+GGG - chr3_4:66999019-66999038 Msa0515680:CDS 20.0%
! TTTCTTACATAATAACTGGA+GGG + chr3_4:66997813-66997832 None:intergenic 25.0%
! ATTTCTTACATAATAACTGG+AGG + chr3_4:66997814-66997833 None:intergenic 25.0%
! ATGTAAGAAATCTTATCCAT+AGG - chr3_4:66997823-66997842 Msa0515680:three_prime_UTR 25.0%
! AAACACCACTAAATTAAACA+TGG - chr3_4:66997921-66997940 Msa0515680:exon 25.0%
!! CCAATTTTGTATGGATAATT+TGG + chr3_4:66997974-66997993 None:intergenic 25.0%
! CCAAATTATCCATACAAAAT+TGG - chr3_4:66997971-66997990 Msa0515680:CDS 25.0%
!!! GGATTAATTTGTTGATTTTG+TGG + chr3_4:66998111-66998130 None:intergenic 25.0%
! CTAGTTAAAGGTAAATTGTT+CGG - chr3_4:66998591-66998610 Msa0515680:intron 25.0%
!!! GTATCATGATTTGTTAAATC+TGG - chr3_4:66998845-66998864 Msa0515680:CDS 25.0%
!! CCTGTTTTCAATTATCAAAA+AGG + chr3_4:66998942-66998961 None:intergenic 25.0%
!!! CCTTTTTGATAATTGAAAAC+AGG - chr3_4:66998939-66998958 Msa0515680:CDS 25.0%
! AAGAAAGTTGTTATATGATG+GGG - chr3_4:66999020-66999039 Msa0515680:CDS 25.0%
! TCAAGTATAATATGAATGCA+AGG - chr3_4:66999046-66999065 Msa0515680:CDS 25.0%
! CAAGTATAATATGAATGCAA+GGG - chr3_4:66999047-66999066 Msa0515680:CDS 25.0%
! TTTCTTACATAATAACTGGA+GGG + chr3_4:66997813-66997832 None:intergenic 25.0%
! ATTTCTTACATAATAACTGG+AGG + chr3_4:66997814-66997833 None:intergenic 25.0%
! ATGTAAGAAATCTTATCCAT+AGG - chr3_4:66997823-66997842 Msa0515680:three_prime_UTR 25.0%
! AAACACCACTAAATTAAACA+TGG - chr3_4:66997921-66997940 Msa0515680:exon 25.0%
!! CCAATTTTGTATGGATAATT+TGG + chr3_4:66997974-66997993 None:intergenic 25.0%
! CCAAATTATCCATACAAAAT+TGG - chr3_4:66997971-66997990 Msa0515680:CDS 25.0%
!!! GGATTAATTTGTTGATTTTG+TGG + chr3_4:66998111-66998130 None:intergenic 25.0%
! CTAGTTAAAGGTAAATTGTT+CGG - chr3_4:66998591-66998610 Msa0515680:intron 25.0%
!!! GTATCATGATTTGTTAAATC+TGG - chr3_4:66998845-66998864 Msa0515680:CDS 25.0%
!! CCTGTTTTCAATTATCAAAA+AGG + chr3_4:66998942-66998961 None:intergenic 25.0%
!!! CCTTTTTGATAATTGAAAAC+AGG - chr3_4:66998939-66998958 Msa0515680:CDS 25.0%
! AAGAAAGTTGTTATATGATG+GGG - chr3_4:66999020-66999039 Msa0515680:CDS 25.0%
! TCAAGTATAATATGAATGCA+AGG - chr3_4:66999046-66999065 Msa0515680:CDS 25.0%
! CAAGTATAATATGAATGCAA+GGG - chr3_4:66999047-66999066 Msa0515680:CDS 25.0%
ATCATATGCATGGGTAAAAT+TGG - chr3_4:66997737-66997756 Msa0515680:three_prime_UTR 30.0%
! TGGTGTTTTCTTGACTTTAA+TGG + chr3_4:66997909-66997928 None:intergenic 30.0%
TAATTTGGTAGAAACCATGT+AGG + chr3_4:66997959-66997978 None:intergenic 30.0%
TTATCCATACAAAATTGGAC+AGG - chr3_4:66997976-66997995 Msa0515680:CDS 30.0%
TGTTGAGCTGATATGAAAAA+TGG + chr3_4:66998033-66998052 None:intergenic 30.0%
TCAACAACAATCTGATGTTA+AGG - chr3_4:66998047-66998066 Msa0515680:CDS 30.0%
ATCAGTAGGATCAAGAATAA+GGG + chr3_4:66998307-66998326 None:intergenic 30.0%
!! ACATGCTAGTCTTGAATTAT+AGG + chr3_4:66998435-66998454 None:intergenic 30.0%
ATAATTCAAGACTAGCATGT+AGG - chr3_4:66998435-66998454 Msa0515680:intron 30.0%
GTAGCAGAATTAACACAAAA+TGG + chr3_4:66998883-66998902 None:intergenic 30.0%
CATTGAATGAATACACACTT+CGG - chr3_4:66998968-66998987 Msa0515680:CDS 30.0%
!!! AATGATTTGCTCACTTTTCT+TGG + chr3_4:66999169-66999188 None:intergenic 30.0%
AAAAAATCTCTTGTCCAAGA+TGG - chr3_4:66999271-66999290 Msa0515680:five_prime_UTR 30.0%
CTTATATTGAGCATTTGCAT+TGG + chr3_4:66999320-66999339 None:intergenic 30.0%
ATCATATGCATGGGTAAAAT+TGG - chr3_4:66997737-66997756 Msa0515680:three_prime_UTR 30.0%
! TGGTGTTTTCTTGACTTTAA+TGG + chr3_4:66997909-66997928 None:intergenic 30.0%
TAATTTGGTAGAAACCATGT+AGG + chr3_4:66997959-66997978 None:intergenic 30.0%
TTATCCATACAAAATTGGAC+AGG - chr3_4:66997976-66997995 Msa0515680:CDS 30.0%
TGTTGAGCTGATATGAAAAA+TGG + chr3_4:66998033-66998052 None:intergenic 30.0%
TCAACAACAATCTGATGTTA+AGG - chr3_4:66998047-66998066 Msa0515680:CDS 30.0%
ATCAGTAGGATCAAGAATAA+GGG + chr3_4:66998307-66998326 None:intergenic 30.0%
!! ACATGCTAGTCTTGAATTAT+AGG + chr3_4:66998435-66998454 None:intergenic 30.0%
ATAATTCAAGACTAGCATGT+AGG - chr3_4:66998435-66998454 Msa0515680:intron 30.0%
GTAGCAGAATTAACACAAAA+TGG + chr3_4:66998883-66998902 None:intergenic 30.0%
CATTGAATGAATACACACTT+CGG - chr3_4:66998968-66998987 Msa0515680:CDS 30.0%
!!! AATGATTTGCTCACTTTTCT+TGG + chr3_4:66999169-66999188 None:intergenic 30.0%
AAAAAATCTCTTGTCCAAGA+TGG - chr3_4:66999271-66999290 Msa0515680:five_prime_UTR 30.0%
CTTATATTGAGCATTTGCAT+TGG + chr3_4:66999320-66999339 None:intergenic 30.0%
GCATGGGTAAAATTGGAAAT+TGG - chr3_4:66997744-66997763 Msa0515680:three_prime_UTR 35.0%
GAAATCTTATCCATAGGAGA+AGG - chr3_4:66997829-66997848 Msa0515680:three_prime_UTR 35.0%
! TGTGGCCATGTTTAATTTAG+TGG + chr3_4:66997929-66997948 None:intergenic 35.0%
TCTGATGTTAAGGAAACAGA+CGG - chr3_4:66998057-66998076 Msa0515680:CDS 35.0%
ATCCAAAAGGAACAAAACCA+AGG - chr3_4:66998127-66998146 Msa0515680:intron 35.0%
! TGATCTTTTACAATCACCTG+AGG + chr3_4:66998162-66998181 None:intergenic 35.0%
CAGGTGATTGTAAAAGATCA+AGG - chr3_4:66998162-66998181 Msa0515680:intron 35.0%
! TGCTTTTGATCAAACTCAGA+TGG - chr3_4:66998272-66998291 Msa0515680:intron 35.0%
CATCAGTAGGATCAAGAATA+AGG + chr3_4:66998308-66998327 None:intergenic 35.0%
CTTGGTCTATTCTTACTTTC+AGG - chr3_4:66998356-66998375 Msa0515680:intron 35.0%
AAAATGATTGAGAGCTCAAG+TGG - chr3_4:66998558-66998577 Msa0515680:intron 35.0%
!! GGTTGATGAACTCTAGTTAA+AGG - chr3_4:66998579-66998598 Msa0515680:intron 35.0%
! GTATTCAAGTTCAAATCCTG+AGG - chr3_4:66998616-66998635 Msa0515680:intron 35.0%
TGTCTGGAAGGTAAATAAAG+TGG + chr3_4:66998661-66998680 None:intergenic 35.0%
AGTTGTTCATCCAAAAAGCT+AGG - chr3_4:66998758-66998777 Msa0515680:CDS 35.0%
!! TTTTCCTTCTCCTAGCTTTT+TGG + chr3_4:66998771-66998790 None:intergenic 35.0%
!! CAAGCTTTTTCTCTCTACTA+TGG - chr3_4:66998902-66998921 Msa0515680:CDS 35.0%
CGAAGTGTGTATTCATTCAA+TGG + chr3_4:66998970-66998989 None:intergenic 35.0%
!!! TCCAAGATGGATGTTTTTTG+AGG - chr3_4:66999284-66999303 Msa0515680:five_prime_UTR 35.0%
ACCTCAAAAAACATCCATCT+TGG + chr3_4:66999288-66999307 None:intergenic 35.0%
TGCAAATGCTCAATATAAGC+AGG - chr3_4:66999321-66999340 Msa0515680:five_prime_UTR 35.0%
GCATGGGTAAAATTGGAAAT+TGG - chr3_4:66997744-66997763 Msa0515680:three_prime_UTR 35.0%
GAAATCTTATCCATAGGAGA+AGG - chr3_4:66997829-66997848 Msa0515680:three_prime_UTR 35.0%
! TGTGGCCATGTTTAATTTAG+TGG + chr3_4:66997929-66997948 None:intergenic 35.0%
TCTGATGTTAAGGAAACAGA+CGG - chr3_4:66998057-66998076 Msa0515680:CDS 35.0%
ATCCAAAAGGAACAAAACCA+AGG - chr3_4:66998127-66998146 Msa0515680:intron 35.0%
! TGATCTTTTACAATCACCTG+AGG + chr3_4:66998162-66998181 None:intergenic 35.0%
CAGGTGATTGTAAAAGATCA+AGG - chr3_4:66998162-66998181 Msa0515680:intron 35.0%
! TGCTTTTGATCAAACTCAGA+TGG - chr3_4:66998272-66998291 Msa0515680:intron 35.0%
CATCAGTAGGATCAAGAATA+AGG + chr3_4:66998308-66998327 None:intergenic 35.0%
CTTGGTCTATTCTTACTTTC+AGG - chr3_4:66998356-66998375 Msa0515680:intron 35.0%
AAAATGATTGAGAGCTCAAG+TGG - chr3_4:66998558-66998577 Msa0515680:intron 35.0%
!! GGTTGATGAACTCTAGTTAA+AGG - chr3_4:66998579-66998598 Msa0515680:intron 35.0%
! GTATTCAAGTTCAAATCCTG+AGG - chr3_4:66998616-66998635 Msa0515680:intron 35.0%
TGTCTGGAAGGTAAATAAAG+TGG + chr3_4:66998661-66998680 None:intergenic 35.0%
AGTTGTTCATCCAAAAAGCT+AGG - chr3_4:66998758-66998777 Msa0515680:CDS 35.0%
!! TTTTCCTTCTCCTAGCTTTT+TGG + chr3_4:66998771-66998790 None:intergenic 35.0%
!! CAAGCTTTTTCTCTCTACTA+TGG - chr3_4:66998902-66998921 Msa0515680:CDS 35.0%
CGAAGTGTGTATTCATTCAA+TGG + chr3_4:66998970-66998989 None:intergenic 35.0%
!!! TCCAAGATGGATGTTTTTTG+AGG - chr3_4:66999284-66999303 Msa0515680:five_prime_UTR 35.0%
ACCTCAAAAAACATCCATCT+TGG + chr3_4:66999288-66999307 None:intergenic 35.0%
TGCAAATGCTCAATATAAGC+AGG - chr3_4:66999321-66999340 Msa0515680:five_prime_UTR 35.0%
TGTGGTCACAGAAGAAATAC+AGG + chr3_4:66997783-66997802 None:intergenic 40.0%
TAACTGGAGGGAAATGTTTG+TGG + chr3_4:66997801-66997820 None:intergenic 40.0%
GCCAACAAGTACTTACATGA+GGG + chr3_4:66997887-66997906 None:intergenic 40.0%
AACCATGTAGGAACAACTTG+TGG + chr3_4:66997947-66997966 None:intergenic 40.0%
TCCATACAAAATTGGACAGG+AGG - chr3_4:66997979-66997998 Msa0515680:CDS 40.0%
! TCCTCCTGTCCAATTTTGTA+TGG + chr3_4:66997983-66998002 None:intergenic 40.0%
TAAAAGATCAAGGCATGACC+AGG - chr3_4:66998172-66998191 Msa0515680:intron 40.0%
AAAAGATCAAGGCATGACCA+GGG - chr3_4:66998173-66998192 Msa0515680:intron 40.0%
!! TGATCAAAAGCACTGGTTTC+TGG + chr3_4:66998264-66998283 None:intergenic 40.0%
! CTGAGTTTGATCAAAAGCAC+TGG + chr3_4:66998271-66998290 None:intergenic 40.0%
ATCCTACTGATGAGTTTGTG+TGG - chr3_4:66998316-66998335 Msa0515680:intron 40.0%
TTCCACACAAACTCATCAGT+AGG + chr3_4:66998321-66998340 None:intergenic 40.0%
GAATCCTGATACTTGCAACT+TGG - chr3_4:66998338-66998357 Msa0515680:intron 40.0%
TAGACCAAGTTGCAAGTATC+AGG + chr3_4:66998345-66998364 None:intergenic 40.0%
TTCTTACTTTCAGGAGCTTG+TGG - chr3_4:66998365-66998384 Msa0515680:intron 40.0%
GACTAAGAATTGTTCTCCTC+AGG + chr3_4:66998635-66998654 None:intergenic 40.0%
TTTACCTTCCAGACAAACTC+CGG - chr3_4:66998666-66998685 Msa0515680:intron 40.0%
TCATCCAAAAAGCTAGGAGA+AGG - chr3_4:66998764-66998783 Msa0515680:CDS 40.0%
GAATACACACTTCGGTTGAT+TGG - chr3_4:66998976-66998995 Msa0515680:CDS 40.0%
!! AAGGGTTCTGAATTTCAGCA+TGG - chr3_4:66999065-66999084 Msa0515680:CDS 40.0%
!! AGGGTTCTGAATTTCAGCAT+GGG - chr3_4:66999066-66999085 Msa0515680:CDS 40.0%
! TTGTTGTTGAACATGATCCG+TGG + chr3_4:66999096-66999115 None:intergenic 40.0%
AAGTACTAGCATCTTCAGGT+TGG + chr3_4:66999125-66999144 None:intergenic 40.0%
TCTCAAGTACTAGCATCTTC+AGG + chr3_4:66999129-66999148 None:intergenic 40.0%
TGTGGTCACAGAAGAAATAC+AGG + chr3_4:66997783-66997802 None:intergenic 40.0%
TAACTGGAGGGAAATGTTTG+TGG + chr3_4:66997801-66997820 None:intergenic 40.0%
GCCAACAAGTACTTACATGA+GGG + chr3_4:66997887-66997906 None:intergenic 40.0%
AACCATGTAGGAACAACTTG+TGG + chr3_4:66997947-66997966 None:intergenic 40.0%
TCCATACAAAATTGGACAGG+AGG - chr3_4:66997979-66997998 Msa0515680:CDS 40.0%
! TCCTCCTGTCCAATTTTGTA+TGG + chr3_4:66997983-66998002 None:intergenic 40.0%
TAAAAGATCAAGGCATGACC+AGG - chr3_4:66998172-66998191 Msa0515680:intron 40.0%
AAAAGATCAAGGCATGACCA+GGG - chr3_4:66998173-66998192 Msa0515680:intron 40.0%
!! TGATCAAAAGCACTGGTTTC+TGG + chr3_4:66998264-66998283 None:intergenic 40.0%
! CTGAGTTTGATCAAAAGCAC+TGG + chr3_4:66998271-66998290 None:intergenic 40.0%
ATCCTACTGATGAGTTTGTG+TGG - chr3_4:66998316-66998335 Msa0515680:intron 40.0%
TTCCACACAAACTCATCAGT+AGG + chr3_4:66998321-66998340 None:intergenic 40.0%
GAATCCTGATACTTGCAACT+TGG - chr3_4:66998338-66998357 Msa0515680:intron 40.0%
TAGACCAAGTTGCAAGTATC+AGG + chr3_4:66998345-66998364 None:intergenic 40.0%
TTCTTACTTTCAGGAGCTTG+TGG - chr3_4:66998365-66998384 Msa0515680:intron 40.0%
GACTAAGAATTGTTCTCCTC+AGG + chr3_4:66998635-66998654 None:intergenic 40.0%
TTTACCTTCCAGACAAACTC+CGG - chr3_4:66998666-66998685 Msa0515680:intron 40.0%
TCATCCAAAAAGCTAGGAGA+AGG - chr3_4:66998764-66998783 Msa0515680:CDS 40.0%
GAATACACACTTCGGTTGAT+TGG - chr3_4:66998976-66998995 Msa0515680:CDS 40.0%
!! AAGGGTTCTGAATTTCAGCA+TGG - chr3_4:66999065-66999084 Msa0515680:CDS 40.0%
!! AGGGTTCTGAATTTCAGCAT+GGG - chr3_4:66999066-66999085 Msa0515680:CDS 40.0%
! TTGTTGTTGAACATGATCCG+TGG + chr3_4:66999096-66999115 None:intergenic 40.0%
AAGTACTAGCATCTTCAGGT+TGG + chr3_4:66999125-66999144 None:intergenic 40.0%
TCTCAAGTACTAGCATCTTC+AGG + chr3_4:66999129-66999148 None:intergenic 40.0%
TAGCTTCACTCCTTCTCCTA+TGG + chr3_4:66997842-66997861 None:intergenic 45.0%
GCCCTCATGTAAGTACTTGT+TGG - chr3_4:66997883-66997902 Msa0515680:three_prime_UTR 45.0%
GGCCAACAAGTACTTACATG+AGG + chr3_4:66997888-66997907 None:intergenic 45.0%
GAAACAGACGGTGTGAAAGT+AGG - chr3_4:66998069-66998088 Msa0515680:CDS 45.0%
!!! GGCCTTGGTTTTGTTCCTTT+TGG + chr3_4:66998132-66998151 None:intergenic 45.0%
ACAATCACCTGAGGTTCAAC+TGG + chr3_4:66998153-66998172 None:intergenic 45.0%
TTGACAATCCGGAGTTTGTC+TGG + chr3_4:66998677-66998696 None:intergenic 45.0%
AGACAAACTCCGGATTGTCA+AGG - chr3_4:66998676-66998695 Msa0515680:intron 45.0%
GGAATGAAGCCTTGACAATC+CGG + chr3_4:66998688-66998707 None:intergenic 45.0%
AGGCTTCATTCCCCTGAAAA+CGG - chr3_4:66998696-66998715 Msa0515680:CDS 45.0%
! CCTTGACAATCCGTTTTCAG+GGG + chr3_4:66998709-66998728 None:intergenic 45.0%
! GCCTTGACAATCCGTTTTCA+GGG + chr3_4:66998710-66998729 None:intergenic 45.0%
! AGCCTTGACAATCCGTTTTC+AGG + chr3_4:66998711-66998730 None:intergenic 45.0%
!! GGGTTCTGAATTTCAGCATG+GGG - chr3_4:66999067-66999086 Msa0515680:CDS 45.0%
ATTTCAGCATGGGGAAACCA+CGG - chr3_4:66999076-66999095 Msa0515680:CDS 45.0%
TAGCTTCACTCCTTCTCCTA+TGG + chr3_4:66997842-66997861 None:intergenic 45.0%
GCCCTCATGTAAGTACTTGT+TGG - chr3_4:66997883-66997902 Msa0515680:three_prime_UTR 45.0%
GGCCAACAAGTACTTACATG+AGG + chr3_4:66997888-66997907 None:intergenic 45.0%
GAAACAGACGGTGTGAAAGT+AGG - chr3_4:66998069-66998088 Msa0515680:CDS 45.0%
!!! GGCCTTGGTTTTGTTCCTTT+TGG + chr3_4:66998132-66998151 None:intergenic 45.0%
ACAATCACCTGAGGTTCAAC+TGG + chr3_4:66998153-66998172 None:intergenic 45.0%
TTGACAATCCGGAGTTTGTC+TGG + chr3_4:66998677-66998696 None:intergenic 45.0%
AGACAAACTCCGGATTGTCA+AGG - chr3_4:66998676-66998695 Msa0515680:intron 45.0%
GGAATGAAGCCTTGACAATC+CGG + chr3_4:66998688-66998707 None:intergenic 45.0%
AGGCTTCATTCCCCTGAAAA+CGG - chr3_4:66998696-66998715 Msa0515680:CDS 45.0%
! CCTTGACAATCCGTTTTCAG+GGG + chr3_4:66998709-66998728 None:intergenic 45.0%
! GCCTTGACAATCCGTTTTCA+GGG + chr3_4:66998710-66998729 None:intergenic 45.0%
! AGCCTTGACAATCCGTTTTC+AGG + chr3_4:66998711-66998730 None:intergenic 45.0%
!! GGGTTCTGAATTTCAGCATG+GGG - chr3_4:66999067-66999086 Msa0515680:CDS 45.0%
ATTTCAGCATGGGGAAACCA+CGG - chr3_4:66999076-66999095 Msa0515680:CDS 45.0%
GGCCACAAGTTGTTCCTACA+TGG - chr3_4:66997942-66997961 Msa0515680:CDS 50.0%
CAAGGCATGACCAGGGAATA+TGG - chr3_4:66998180-66998199 Msa0515680:intron 50.0%
ATAGATCCTCACATGTCGCG+TGG + chr3_4:66998226-66998245 None:intergenic 50.0%
GGAGCTTGTGGATCACTATG+AGG - chr3_4:66998377-66998396 Msa0515680:intron 50.0%
CAATCCGGAGTTTGTCTGGA+AGG + chr3_4:66998673-66998692 None:intergenic 50.0%
!! CCCCTGAAAACGGATTGTCA+AGG - chr3_4:66998706-66998725 Msa0515680:CDS 50.0%
GGCCACAAGTTGTTCCTACA+TGG - chr3_4:66997942-66997961 Msa0515680:CDS 50.0%
CAAGGCATGACCAGGGAATA+TGG - chr3_4:66998180-66998199 Msa0515680:intron 50.0%
ATAGATCCTCACATGTCGCG+TGG + chr3_4:66998226-66998245 None:intergenic 50.0%
GGAGCTTGTGGATCACTATG+AGG - chr3_4:66998377-66998396 Msa0515680:intron 50.0%
CAATCCGGAGTTTGTCTGGA+AGG + chr3_4:66998673-66998692 None:intergenic 50.0%
!! CCCCTGAAAACGGATTGTCA+AGG - chr3_4:66998706-66998725 Msa0515680:CDS 50.0%
ACCAAGGCCAGTTGAACCTC+AGG - chr3_4:66998143-66998162 Msa0515680:intron 55.0%
! ACCTGAGGTTCAACTGGCCT+TGG + chr3_4:66998147-66998166 None:intergenic 55.0%
GGCATGACCAGGGAATATGG+AGG - chr3_4:66998183-66998202 Msa0515680:intron 55.0%
CCACTGTCCTCCATATTCCC+TGG + chr3_4:66998193-66998212 None:intergenic 55.0%
CCAGGGAATATGGAGGACAG+TGG - chr3_4:66998190-66998209 Msa0515680:intron 55.0%
ACCAAGGCCAGTTGAACCTC+AGG - chr3_4:66998143-66998162 Msa0515680:intron 55.0%
! ACCTGAGGTTCAACTGGCCT+TGG + chr3_4:66998147-66998166 None:intergenic 55.0%
GGCATGACCAGGGAATATGG+AGG - chr3_4:66998183-66998202 Msa0515680:intron 55.0%
CCACTGTCCTCCATATTCCC+TGG + chr3_4:66998193-66998212 None:intergenic 55.0%
CCAGGGAATATGGAGGACAG+TGG - chr3_4:66998190-66998209 Msa0515680:intron 55.0%
GCTGTGCCACGCGACATGTG+AGG - chr3_4:66998217-66998236 Msa0515680:intron 65.0%
GCTGTGCCACGCGACATGTG+AGG - chr3_4:66998217-66998236 Msa0515680:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 66997701 66999376 66997701 ID=Msa0515680;Name=Msa0515680
chr3_4 mRNA 66997701 66999376 66997701 ID=Msa0515680-mRNA-1;Parent=Msa0515680;Name=Msa0515680-mRNA-1;_AED=0.39;_eAED=0.39;_QI=239|1|1|1|1|1|2|230|214
chr3_4 exon 66997701 66998116 66997701 ID=Msa0515680-mRNA-1:exon:17426;Parent=Msa0515680-mRNA-1
chr3_4 exon 66998679 66999376 66998679 ID=Msa0515680-mRNA-1:exon:17425;Parent=Msa0515680-mRNA-1
chr3_4 five_prime_UTR 66999138 66999376 66999138 ID=Msa0515680-mRNA-1:five_prime_utr;Parent=Msa0515680-mRNA-1
chr3_4 CDS 66998679 66999137 66998679 ID=Msa0515680-mRNA-1:cds;Parent=Msa0515680-mRNA-1
chr3_4 CDS 66997931 66998116 66997931 ID=Msa0515680-mRNA-1:cds;Parent=Msa0515680-mRNA-1
chr3_4 three_prime_UTR 66997701 66997930 66997701 ID=Msa0515680-mRNA-1:three_prime_utr;Parent=Msa0515680-mRNA-1
Gene Sequence

>Msa0515680

ATGGCCACAAGTTGTTCCTACATGGTTTCTACCAAATTATCCATACAAAATTGGACAGGAGGAAGAAGAAAAGAAGTAAGAAACAGAACTCCATTTTTCATATCAGCTCAACAACAATCTGATGTTAAGGAAACAGACGGTGTGAAAGTAGGAACAGAGAAAGAAATACCACAAAATCAACAAATTAATCCAAAAGGAACAAAACCAAGGCCAGTTGAACCTCAGGTGATTGTAAAAGATCAAGGCATGACCAGGGAATATGGAGGACAGTGGTTGAGCTGTGCCACGCGACATGTGAGGATCTATGCAGCTTATATTGATCCAGAAACCAGTGCTTTTGATCAAACTCAGATGGATAAACTCACCCTTATTCTTGATCCTACTGATGAGTTTGTGTGGAATCCTGATACTTGCAACTTGGTCTATTCTTACTTTCAGGAGCTTGTGGATCACTATGAGGGTGCTCCATTGAATGAATACACACTTCGGTTGATTGGTTCAGACATAGAGCATTATATAAGAAAGTTGTTATATGATGGGGTAATCAAGTATAATATGAATGCAAGGGTTCTGAATTTCAGCATGGGGAAACCACGGATCATGTTCAACAACAATGATATCCAACCTGAAGATGCTAGTACTTGA

Protein sequence

>Msa0515680

MATSCSYMVSTKLSIQNWTGGRRKEVRNRTPFFISAQQQSDVKETDGVKVGTEKEIPQNQQINPKGTKPRPVEPQVIVKDQGMTREYGGQWLSCATRHVRIYAAYIDPETSAFDQTQMDKLTLILDPTDEFVWNPDTCNLVYSYFQELVDHYEGAPLNEYTLRLIGSDIEHYIRKLLYDGVIKYNMNARVLNFSMGKPRIMFNNNDIQPEDAST*