Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011930 | Msa1297170 | 0.811433 | 7.020143e-51 | -8.615850e-47 |
| Msa0014570 | Msa1297170 | 0.801800 | 7.588891e-49 | -8.615850e-47 |
| Msa0072720 | Msa1297170 | 0.808592 | 2.870669e-50 | -8.615850e-47 |
| Msa0108410 | Msa1297170 | 0.807618 | 4.628297e-50 | -8.615850e-47 |
| Msa0638350 | Msa1297170 | 0.812386 | 4.350863e-51 | -8.615850e-47 |
| Msa0638360 | Msa1297170 | 0.803823 | 2.900300e-49 | -8.615850e-47 |
| Msa0707250 | Msa1297170 | 0.816063 | 6.708734e-52 | -8.615850e-47 |
| Msa0760560 | Msa1297170 | 0.814996 | 1.159133e-51 | -8.615850e-47 |
| Msa0780930 | Msa1297170 | 0.813957 | 1.966985e-51 | -8.615850e-47 |
| Msa0789100 | Msa1297170 | 0.812282 | 4.585294e-51 | -8.615850e-47 |
| Msa0805450 | Msa1297170 | 0.806662 | 7.376645e-50 | -8.615850e-47 |
| Msa0833530 | Msa1297170 | 0.804831 | 1.788694e-49 | -8.615850e-47 |
| Msa0125650 | Msa1297170 | 0.827113 | 1.871847e-54 | -8.615850e-47 |
| Msa0138360 | Msa1297170 | 0.807350 | 5.276708e-50 | -8.615850e-47 |
| Msa0154440 | Msa1297170 | 0.825989 | 3.469464e-54 | -8.615850e-47 |
| Msa0171280 | Msa1297170 | 0.817411 | 3.343774e-52 | -8.615850e-47 |
| Msa0206690 | Msa1297170 | 0.800654 | 1.302034e-48 | -8.615850e-47 |
| Msa0207350 | Msa1297170 | 0.812256 | 4.646357e-51 | -8.615850e-47 |
| Msa0223340 | Msa1297170 | 0.811929 | 5.473429e-51 | -8.615850e-47 |
| Msa1243870 | Msa1297170 | 0.820482 | 6.703070e-53 | -8.615850e-47 |
| Msa1297170 | Msa1355450 | 0.811974 | 5.352721e-51 | -8.615850e-47 |
| Msa1297170 | Msa1390680 | 0.808528 | 2.963169e-50 | -8.615850e-47 |
| Msa1297170 | Msa1390700 | 0.817086 | 3.957491e-52 | -8.615850e-47 |
| Msa1297170 | Msa1392890 | 0.808316 | 3.288561e-50 | -8.615850e-47 |
| Msa1297170 | Msa1392900 | 0.807526 | 4.841731e-50 | -8.615850e-47 |
| Msa1297170 | Msa1392910 | 0.818382 | 2.018506e-52 | -8.615850e-47 |
| Msa1297170 | Msa1393570 | 0.803433 | 3.494106e-49 | -8.615850e-47 |
| Msa1297170 | Msa1418240 | 0.831276 | 1.830204e-55 | -8.615850e-47 |
| Msa1297170 | Msa1465570 | 0.805175 | 1.515400e-49 | -8.615850e-47 |
| Msa0365100 | Msa1297170 | 0.804992 | 1.655264e-49 | -8.615850e-47 |
| Msa0382370 | Msa1297170 | 0.816116 | 6.527562e-52 | -8.615850e-47 |
| Msa0432160 | Msa1297170 | 0.821751 | 3.417698e-53 | -8.615850e-47 |
| Msa0450400 | Msa1297170 | -0.801139 | 1.036856e-48 | -8.615850e-47 |
| Msa0476680 | Msa1297170 | 0.822391 | 2.428898e-53 | -8.615850e-47 |
| Msa0479200 | Msa1297170 | 0.811331 | 7.386844e-51 | -8.615850e-47 |
| Msa0481970 | Msa1297170 | 0.806127 | 9.566795e-50 | -8.615850e-47 |
| Msa1034500 | Msa1297170 | 0.836366 | 9.758108e-57 | -8.615850e-47 |
| Msa1039390 | Msa1297170 | 0.809841 | 1.550239e-50 | -8.615850e-47 |
| Msa1064250 | Msa1297170 | 0.800471 | 1.419182e-48 | -8.615850e-47 |
| Msa1080640 | Msa1297170 | 0.800951 | 1.132784e-48 | -8.615850e-47 |
| Msa1089450 | Msa1297170 | 0.826243 | 3.019291e-54 | -8.615850e-47 |
| Msa0240900 | Msa1297170 | 0.810427 | 1.158729e-50 | -8.615850e-47 |
| Msa0259210 | Msa1297170 | 0.829295 | 5.577158e-55 | -8.615850e-47 |
| Msa0259220 | Msa1297170 | 0.813261 | 2.798631e-51 | -8.615850e-47 |
| Msa0259230 | Msa1297170 | 0.803958 | 2.719398e-49 | -8.615850e-47 |
| Msa0290980 | Msa1297170 | 0.962897 | 1.987781e-121 | -8.615850e-47 |
| Msa0296820 | Msa1297170 | 0.809466 | 1.866214e-50 | -8.615850e-47 |
| Msa0317970 | Msa1297170 | 0.847793 | 9.236584e-60 | -8.615850e-47 |
| Msa0336300 | Msa1297170 | 0.806854 | 6.718511e-50 | -8.615850e-47 |
| Msa0336310 | Msa1297170 | 0.810543 | 1.093923e-50 | -8.615850e-47 |
| Msa0336320 | Msa1297170 | 0.814048 | 1.878897e-51 | -8.615850e-47 |
| Msa1144880 | Msa1297170 | 0.808654 | 2.785570e-50 | -8.615850e-47 |
| Msa1175200 | Msa1297170 | 0.801072 | 1.070135e-48 | -8.615850e-47 |
| Msa1189650 | Msa1297170 | 0.805340 | 1.399582e-49 | -8.615850e-47 |
| Msa1208580 | Msa1297170 | 0.801193 | 1.010763e-48 | -8.615850e-47 |
| Msa0485240 | Msa1297170 | 0.819246 | 1.284537e-52 | -8.615850e-47 |
| Msa0521010 | Msa1297170 | 0.825764 | 3.924321e-54 | -8.615850e-47 |
| Msa0527190 | Msa1297170 | 0.800219 | 1.597093e-48 | -8.615850e-47 |
| Msa0572840 | Msa1297170 | 0.818679 | 1.728754e-52 | -8.615850e-47 |
| Msa0871720 | Msa1297170 | 0.810121 | 1.349162e-50 | -8.615850e-47 |
| Msa0928490 | Msa1297170 | 0.808727 | 2.687461e-50 | -8.615850e-47 |
| Msa0937020 | Msa1297170 | 0.815510 | 8.908954e-52 | -8.615850e-47 |
| Msa0944200 | Msa1297170 | 0.801475 | 8.849320e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 65 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCCTCATTCACGTTATT+TGG | 0.120247 | 8_3:+57085224 | Msa1297170:three_prime_UTR |
| TGAATCCTTCTACAAAATTT+TGG | 0.140849 | 8_3:-57085118 | None:intergenic |
| ATTTCACTGCAATATTAAAA+TGG | 0.162291 | 8_3:+57085299 | Msa1297170:three_prime_UTR |
| GAAGAAGAAGGGATGGTTTC+AGG | 0.204198 | 8_3:-57082796 | None:intergenic |
| GCTTGCAATCTTGTATGTTT+TGG | 0.242633 | 8_3:+57083930 | Msa1297170:five_prime_UTR |
| AGTATTATCTTTCTTGTTCT+TGG | 0.257040 | 8_3:+57083015 | Msa1297170:five_prime_UTR |
| ATATTTCTACTTTAAATTGA+TGG | 0.292614 | 8_3:+57083105 | Msa1297170:five_prime_UTR |
| TTCTTGTGAGGAAACATAAT+TGG | 0.308784 | 8_3:+57083545 | Msa1297170:five_prime_UTR |
| ACCGGTACAATAACTTGTAT+TGG | 0.321026 | 8_3:+57083062 | Msa1297170:five_prime_UTR |
| AAACAATCAACAGTTAGATA+TGG | 0.325393 | 8_3:+57084922 | Msa1297170:CDS |
| CCGGTACAATAACTTGTATT+GGG | 0.326106 | 8_3:+57083063 | Msa1297170:five_prime_UTR |
| CAACAATCAAAAGATTTAAA+TGG | 0.335272 | 8_3:+57084108 | Msa1297170:exon |
| GGATGAAAACATACAAGATT+GGG | 0.377473 | 8_3:-57084001 | None:intergenic |
| TCTTTCTACTATCAAAGTTT+CGG | 0.377825 | 8_3:+57082992 | Msa1297170:five_prime_UTR |
| AATATTGCAGTGAAATGGTA+TGG | 0.405907 | 8_3:-57085292 | None:intergenic |
| TGGATGAAAACATACAAGAT+TGG | 0.412221 | 8_3:-57084002 | None:intergenic |
| ATATCTTCTTTCAAACATAC+AGG | 0.422903 | 8_3:+57083468 | Msa1297170:five_prime_UTR |
| AGCTCCGCTACGGTGGTAAC+CGG | 0.428306 | 8_3:-57083910 | None:intergenic |
| ATAAATAATTTATAACAAAT+CGG | 0.440236 | 8_3:+57083689 | Msa1297170:five_prime_UTR |
| TAGAAGGATTCAAATTGAAA+AGG | 0.441711 | 8_3:+57085129 | Msa1297170:three_prime_UTR |
| TTTCACTGCAATATTAAAAT+GGG | 0.441864 | 8_3:+57085300 | Msa1297170:three_prime_UTR |
| AGGATTCAATGTCATGGTTA+AGG | 0.448696 | 8_3:+57083430 | Msa1297170:five_prime_UTR |
| AACAATCAACAGTTAGATAT+GGG | 0.458261 | 8_3:+57084923 | Msa1297170:CDS |
| GCAATATTAAAATGGGTGAA+TGG | 0.461712 | 8_3:+57085307 | Msa1297170:three_prime_UTR |
| CTAGCCGAAAAGATGATTGT+AGG | 0.482584 | 8_3:-57083783 | None:intergenic |
| TGAATCCTCATCAACTAAAA+CGG | 0.485963 | 8_3:-57083415 | None:intergenic |
| GGACAGCTTTCAAGAGAAGA+TGG | 0.489560 | 8_3:+57084556 | Msa1297170:CDS |
| TAGAAAGAAAGAGGAGAATG+AGG | 0.495644 | 8_3:-57082912 | None:intergenic |
| CAATATTAAAATGGGTGAAT+GGG | 0.496422 | 8_3:+57085308 | Msa1297170:three_prime_UTR |
| CAAAATGATAGAAATAGAAG+AGG | 0.508824 | 8_3:+57084982 | Msa1297170:CDS |
| CATGGTGAAAGAGAAGAAGA+AGG | 0.510564 | 8_3:-57082808 | None:intergenic |
| TTGTCGGTGACAGTGGTTCA+TGG | 0.512542 | 8_3:-57082826 | None:intergenic |
| AAGGATTCAAATTGAAAAGG+TGG | 0.513857 | 8_3:+57085132 | Msa1297170:three_prime_UTR |
| ACATCCAAATAACGTGAATG+AGG | 0.516654 | 8_3:-57085228 | None:intergenic |
| ATGGTTTCAGGCGAGAGAGA+AGG | 0.520999 | 8_3:-57082784 | None:intergenic |
| CCCAATACAAGTTATTGTAC+CGG | 0.521547 | 8_3:-57083063 | None:intergenic |
| TGTTGTTTACAGATCTTCAC+AGG | 0.522599 | 8_3:+57084151 | Msa1297170:CDS |
| ATAGATCTGGCGTAAGTTGT+CGG | 0.533230 | 8_3:-57082842 | None:intergenic |
| ATGGTGAAAGAGAAGAAGAA+GGG | 0.533278 | 8_3:-57082807 | None:intergenic |
| TCGTCGGAAAGATATAGATC+TGG | 0.541077 | 8_3:-57082855 | None:intergenic |
| TGGTTTCAGGCGAGAGAGAA+GGG | 0.542308 | 8_3:-57082783 | None:intergenic |
| TAGCCGAAAAGATGATTGTA+GGG | 0.543811 | 8_3:-57083782 | None:intergenic |
| AAAAGGATCAGACTACCTTC+CGG | 0.551245 | 8_3:+57083891 | Msa1297170:five_prime_UTR |
| AACAAAATCACATTTATCAA+AGG | 0.555268 | 8_3:+57083495 | Msa1297170:five_prime_UTR |
| TGAAAGAGAAGAAGAAGGGA+TGG | 0.561193 | 8_3:-57082803 | None:intergenic |
| TTTAAGATTACACATGGAGG+AGG | 0.573660 | 8_3:+57084948 | Msa1297170:CDS |
| ATATTGCAGTGAAATGGTAT+GGG | 0.580873 | 8_3:-57085291 | None:intergenic |
| TTGATGAGGATTCAATGTCA+TGG | 0.586649 | 8_3:+57083424 | Msa1297170:five_prime_UTR |
| CATCCAAATAACGTGAATGA+GGG | 0.592118 | 8_3:-57085227 | None:intergenic |
| CAAGATTGCAAGCTCCGCTA+CGG | 0.592316 | 8_3:-57083920 | None:intergenic |
| GCGTAAGTTGTCGGTGACAG+TGG | 0.595288 | 8_3:-57082833 | None:intergenic |
| TCCTCATCAACTAAAACGGA+CGG | 0.601095 | 8_3:-57083411 | None:intergenic |
| GAAGAAAGAATGAAATGTGT+GGG | 0.607788 | 8_3:+57085050 | Msa1297170:three_prime_UTR |
| TTGTACCGGTAAAATAGAGA+AGG | 0.608023 | 8_3:-57083049 | None:intergenic |
| TACCGGTAAAATAGAGAAGG+AGG | 0.615686 | 8_3:-57083046 | None:intergenic |
| GATGAAAACATACAAGATTG+GGG | 0.620256 | 8_3:-57084000 | None:intergenic |
| TGGGAGTTTAAGATTACACA+TGG | 0.620721 | 8_3:+57084942 | Msa1297170:CDS |
| TTGTATCCATTGTTCTTGTG+AGG | 0.621453 | 8_3:+57083533 | Msa1297170:five_prime_UTR |
| CGGTAAAATAGAGAAGGAGG+AGG | 0.624435 | 8_3:-57083043 | None:intergenic |
| ATGTTTCCTCACAAGAACAA+TGG | 0.628983 | 8_3:-57083539 | None:intergenic |
| GATTGCAAGCTCCGCTACGG+TGG | 0.641124 | 8_3:-57083917 | None:intergenic |
| TGAAGAAAGAATGAAATGTG+TGG | 0.649465 | 8_3:+57085049 | Msa1297170:three_prime_UTR |
| CCGCTACGGTGGTAACCGGA+AGG | 0.685907 | 8_3:-57083906 | None:intergenic |
| GAGTTTAAGATTACACATGG+AGG | 0.765202 | 8_3:+57084945 | Msa1297170:CDS |
| CCTTCCGGTTACCACCGTAG+CGG | 0.809313 | 8_3:+57083906 | Msa1297170:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCTTAATGATTTTTTTT+TGG | - | chr8_3:57083286-57083305 | None:intergenic | 10.0% |
| !! | AAAATAAAACAAAATAAACT+TGG | - | chr8_3:57084025-57084044 | None:intergenic | 10.0% |
| !! | TTTGAAAAAAATAATTGTTA+TGG | - | chr8_3:57084256-57084275 | None:intergenic | 10.0% |
| !!! | ATGTAATTATTTTTGAGTAA+AGG | - | chr8_3:57082881-57082900 | None:intergenic | 15.0% |
| !!! | TATCAAAATAGATTTTCAAA+AGG | + | chr8_3:57082933-57082952 | Msa1297170:five_prime_UTR | 15.0% |
| !!! | ATATTTCTACTTTAAATTGA+TGG | + | chr8_3:57083105-57083124 | Msa1297170:five_prime_UTR | 15.0% |
| !!! | CTTGAAAGTTTTTTTTTATA+GGG | - | chr8_3:57084528-57084547 | None:intergenic | 15.0% |
| !!! | ACTTGAAAGTTTTTTTTTAT+AGG | - | chr8_3:57084529-57084548 | None:intergenic | 15.0% |
| !! | ATAAAATTGGTTAAAAATCA+AGG | + | chr8_3:57084607-57084626 | Msa1297170:intron | 15.0% |
| !! | CAAAAATAAGTATAGTTTAA+CGG | + | chr8_3:57085164-57085183 | Msa1297170:three_prime_UTR | 15.0% |
| !!! | AATTGCTTTTTATAAATTCT+TGG | - | chr8_3:57085193-57085212 | None:intergenic | 15.0% |
| !!! | TTACTTTTAACAAAATCTGT+CGG | + | chr8_3:57082737-57082756 | Msa1297170:five_prime_UTR | 20.0% |
| !!! | ATGATCTTTTTATTTGACAA+GGG | - | chr8_3:57083330-57083349 | None:intergenic | 20.0% |
| !!! | TATGATCTTTTTATTTGACA+AGG | - | chr8_3:57083331-57083350 | None:intergenic | 20.0% |
| !! | AACAAAATCACATTTATCAA+AGG | + | chr8_3:57083495-57083514 | Msa1297170:five_prime_UTR | 20.0% |
| !!! | AACTATTTTTTTTTCATGTG+CGG | + | chr8_3:57083588-57083607 | Msa1297170:five_prime_UTR | 20.0% |
| !! | CAACAATCAAAAGATTTAAA+TGG | + | chr8_3:57084108-57084127 | Msa1297170:exon | 20.0% |
| !!! | TTTTCTGTTTAAGAACTAAA+AGG | + | chr8_3:57084200-57084219 | Msa1297170:intron | 20.0% |
| !!! | GAACTAAAAGGTTTTTTTAT+TGG | + | chr8_3:57084212-57084231 | Msa1297170:intron | 20.0% |
| !!! | TTTAACCAATTTTATTTGCT+AGG | - | chr8_3:57084602-57084621 | None:intergenic | 20.0% |
| !!! | ATTTAATCAAAAGCTTTTTG+AGG | - | chr8_3:57085261-57085280 | None:intergenic | 20.0% |
| !!! | AAAAAGCTTTTGATTAAATG+AGG | + | chr8_3:57085262-57085281 | Msa1297170:three_prime_UTR | 20.0% |
| !!! | ATTTTAATATTGCAGTGAAA+TGG | - | chr8_3:57085300-57085319 | None:intergenic | 20.0% |
| !! | ATTTCACTGCAATATTAAAA+TGG | + | chr8_3:57085299-57085318 | Msa1297170:three_prime_UTR | 20.0% |
| !! | TTTCACTGCAATATTAAAAT+GGG | + | chr8_3:57085300-57085319 | Msa1297170:three_prime_UTR | 20.0% |
| !!! | CTATTTTGATAGAAAGAAAG+AGG | - | chr8_3:57082924-57082943 | None:intergenic | 25.0% |
| ! | TCTTTCTACTATCAAAGTTT+CGG | + | chr8_3:57082992-57083011 | Msa1297170:five_prime_UTR | 25.0% |
| ! | AGTATTATCTTTCTTGTTCT+TGG | + | chr8_3:57083015-57083034 | Msa1297170:five_prime_UTR | 25.0% |
| !! | CTTAATTATGATCTTTTTGC+AGG | - | chr8_3:57083370-57083389 | None:intergenic | 25.0% |
| ! | ATATCTTCTTTCAAACATAC+AGG | + | chr8_3:57083468-57083487 | Msa1297170:five_prime_UTR | 25.0% |
| ! | CACATTTATCAAAGGAAAAA+AGG | + | chr8_3:57083503-57083522 | Msa1297170:five_prime_UTR | 25.0% |
| !!! | GTTTTTCAAAAGTTTGTATG+TGG | - | chr8_3:57083819-57083838 | None:intergenic | 25.0% |
| ! | CAAAACCCAGTAAAAAAAAA+AGG | + | chr8_3:57083874-57083893 | Msa1297170:five_prime_UTR | 25.0% |
| !!! | CTGATCCTTTTTTTTTTACT+GGG | - | chr8_3:57083882-57083901 | None:intergenic | 25.0% |
| !!! | TCTGATCCTTTTTTTTTTAC+TGG | - | chr8_3:57083883-57083902 | None:intergenic | 25.0% |
| !!! | AAGGTTTTTTTATTGGTGTT+TGG | + | chr8_3:57084219-57084238 | Msa1297170:intron | 25.0% |
| !!! | AAAAACTTTCAAGTTTCAAG+AGG | + | chr8_3:57084535-57084554 | Msa1297170:CDS | 25.0% |
| ! | GAAAACCTAGCAAATAAAAT+TGG | + | chr8_3:57084594-57084613 | Msa1297170:intron | 25.0% |
| ! | GTTTATTTGTTCTCACTTAT+CGG | + | chr8_3:57084636-57084655 | Msa1297170:intron | 25.0% |
| ! | TGTTTACTTGCAAAAGAAAT+TGG | + | chr8_3:57084824-57084843 | Msa1297170:intron | 25.0% |
| !! | TGTTATTGTCATTTACTTAC+CGG | + | chr8_3:57084847-57084866 | Msa1297170:intron | 25.0% |
| ! | AAACAATCAACAGTTAGATA+TGG | + | chr8_3:57084922-57084941 | Msa1297170:CDS | 25.0% |
| ! | AACAATCAACAGTTAGATAT+GGG | + | chr8_3:57084923-57084942 | Msa1297170:CDS | 25.0% |
| ! | CAAAATGATAGAAATAGAAG+AGG | + | chr8_3:57084982-57085001 | Msa1297170:CDS | 25.0% |
| ! | AGAGAAAAAGAAACTGAAAA+AGG | + | chr8_3:57085013-57085032 | Msa1297170:exon | 25.0% |
| ! | GAGAAAAAGAAACTGAAAAA+GGG | + | chr8_3:57085014-57085033 | Msa1297170:exon | 25.0% |
| !! | TGAATCCTTCTACAAAATTT+TGG | - | chr8_3:57085121-57085140 | None:intergenic | 25.0% |
| ! | TAGAAGGATTCAAATTGAAA+AGG | + | chr8_3:57085129-57085148 | Msa1297170:three_prime_UTR | 25.0% |
| ! | CAATATTAAAATGGGTGAAT+GGG | + | chr8_3:57085308-57085327 | Msa1297170:three_prime_UTR | 25.0% |
| !!! | TATTTTTGAGTAAAGGTCGT+CGG | - | chr8_3:57082874-57082893 | None:intergenic | 30.0% |
| TGAATCCTCATCAACTAAAA+CGG | - | chr8_3:57083418-57083437 | None:intergenic | 30.0% | |
| TTCTTGTGAGGAAACATAAT+TGG | + | chr8_3:57083545-57083564 | Msa1297170:five_prime_UTR | 30.0% | |
| ! | TTTCCCTACAATCATCTTTT+CGG | + | chr8_3:57083779-57083798 | Msa1297170:five_prime_UTR | 30.0% |
| TAAAAATTCTGACCTAGATC+TGG | - | chr8_3:57083957-57083976 | None:intergenic | 30.0% | |
| GATGAAAACATACAAGATTG+GGG | - | chr8_3:57084003-57084022 | None:intergenic | 30.0% | |
| GGATGAAAACATACAAGATT+GGG | - | chr8_3:57084004-57084023 | None:intergenic | 30.0% | |
| TGGATGAAAACATACAAGAT+TGG | - | chr8_3:57084005-57084024 | None:intergenic | 30.0% | |
| ! | ATAGATATTGGTAACACCTT+TGG | - | chr8_3:57084686-57084705 | None:intergenic | 30.0% |
| !! | AAAGGTGTTACCAATATCTA+TGG | + | chr8_3:57084685-57084704 | Msa1297170:intron | 30.0% |
| TAGATGTTATCTTCAGTTGT+TGG | + | chr8_3:57084799-57084818 | Msa1297170:intron | 30.0% | |
| TGAAGAAAGAATGAAATGTG+TGG | + | chr8_3:57085049-57085068 | Msa1297170:three_prime_UTR | 30.0% | |
| GAAGAAAGAATGAAATGTGT+GGG | + | chr8_3:57085050-57085069 | Msa1297170:three_prime_UTR | 30.0% | |
| AAGGATTCAAATTGAAAAGG+TGG | + | chr8_3:57085132-57085151 | Msa1297170:three_prime_UTR | 30.0% | |
| ATATTGCAGTGAAATGGTAT+GGG | - | chr8_3:57085294-57085313 | None:intergenic | 30.0% | |
| AATATTGCAGTGAAATGGTA+TGG | - | chr8_3:57085295-57085314 | None:intergenic | 30.0% | |
| GCAATATTAAAATGGGTGAA+TGG | + | chr8_3:57085307-57085326 | Msa1297170:three_prime_UTR | 30.0% | |
| ATGGTGAAAGAGAAGAAGAA+GGG | - | chr8_3:57082810-57082829 | None:intergenic | 35.0% | |
| TAGAAAGAAAGAGGAGAATG+AGG | - | chr8_3:57082915-57082934 | None:intergenic | 35.0% | |
| ! | TTGTACCGGTAAAATAGAGA+AGG | - | chr8_3:57083052-57083071 | None:intergenic | 35.0% |
| ! | ACCGGTACAATAACTTGTAT+TGG | + | chr8_3:57083062-57083081 | Msa1297170:five_prime_UTR | 35.0% |
| CCCAATACAAGTTATTGTAC+CGG | - | chr8_3:57083066-57083085 | None:intergenic | 35.0% | |
| ! | CCGGTACAATAACTTGTATT+GGG | + | chr8_3:57083063-57083082 | Msa1297170:five_prime_UTR | 35.0% |
| TTGATGAGGATTCAATGTCA+TGG | + | chr8_3:57083424-57083443 | Msa1297170:five_prime_UTR | 35.0% | |
| AGGATTCAATGTCATGGTTA+AGG | + | chr8_3:57083430-57083449 | Msa1297170:five_prime_UTR | 35.0% | |
| TTGTATCCATTGTTCTTGTG+AGG | + | chr8_3:57083533-57083552 | Msa1297170:five_prime_UTR | 35.0% | |
| ATGTTTCCTCACAAGAACAA+TGG | - | chr8_3:57083542-57083561 | None:intergenic | 35.0% | |
| TAGCCGAAAAGATGATTGTA+GGG | - | chr8_3:57083785-57083804 | None:intergenic | 35.0% | |
| ! | GATTGAGAGGACTCTTTTTA+TGG | - | chr8_3:57083847-57083866 | None:intergenic | 35.0% |
| ! | GTTTTGTAGAGAAGATTGAG+AGG | - | chr8_3:57083860-57083879 | None:intergenic | 35.0% |
| ! | GCTTGCAATCTTGTATGTTT+TGG | + | chr8_3:57083930-57083949 | Msa1297170:five_prime_UTR | 35.0% |
| ! | CATGTTTGATGACTAAACTG+AGG | - | chr8_3:57084073-57084092 | None:intergenic | 35.0% |
| ! | TGTTGTTTACAGATCTTCAC+AGG | + | chr8_3:57084151-57084170 | Msa1297170:CDS | 35.0% |
| GAAAAGTCTGAGAGAATTTG+TGG | - | chr8_3:57084185-57084204 | None:intergenic | 35.0% | |
| ! | ATATTGGTAACACCTTTGGT+AGG | - | chr8_3:57084682-57084701 | None:intergenic | 35.0% |
| CGAGAAAAAGCCATAGATAT+TGG | - | chr8_3:57084698-57084717 | None:intergenic | 35.0% | |
| !! | CTTTTGTTTGCAGGAAATGT+TGG | - | chr8_3:57084733-57084752 | None:intergenic | 35.0% |
| !! | ATAGTTGAGCTTTTGTTTGC+AGG | - | chr8_3:57084742-57084761 | None:intergenic | 35.0% |
| ! | TGGGAGTTTAAGATTACACA+TGG | + | chr8_3:57084942-57084961 | Msa1297170:CDS | 35.0% |
| ! | GAGTTTAAGATTACACATGG+AGG | + | chr8_3:57084945-57084964 | Msa1297170:CDS | 35.0% |
| ! | TTTAAGATTACACATGGAGG+AGG | + | chr8_3:57084948-57084967 | Msa1297170:CDS | 35.0% |
| ! | GAGAGCCAAAATTTTGTAGA+AGG | + | chr8_3:57085113-57085132 | Msa1297170:three_prime_UTR | 35.0% |
| ATTCCCTCATTCACGTTATT+TGG | + | chr8_3:57085224-57085243 | Msa1297170:three_prime_UTR | 35.0% | |
| CATCCAAATAACGTGAATGA+GGG | - | chr8_3:57085230-57085249 | None:intergenic | 35.0% | |
| ACATCCAAATAACGTGAATG+AGG | - | chr8_3:57085231-57085250 | None:intergenic | 35.0% | |
| ACAATGCTTACCCCTAAAAA+TGG | + | chr8_3:57085337-57085356 | Msa1297170:three_prime_UTR | 35.0% | |
| CAATGCTTACCCCTAAAAAT+GGG | + | chr8_3:57085338-57085357 | Msa1297170:three_prime_UTR | 35.0% | |
| TGAAAGAGAAGAAGAAGGGA+TGG | - | chr8_3:57082806-57082825 | None:intergenic | 40.0% | |
| CATGGTGAAAGAGAAGAAGA+AGG | - | chr8_3:57082811-57082830 | None:intergenic | 40.0% | |
| ATAGATCTGGCGTAAGTTGT+CGG | - | chr8_3:57082845-57082864 | None:intergenic | 40.0% | |
| TCGTCGGAAAGATATAGATC+TGG | - | chr8_3:57082858-57082877 | None:intergenic | 40.0% | |
| ! | CTCCTCCTTCTCTATTTTAC+CGG | + | chr8_3:57083044-57083063 | Msa1297170:five_prime_UTR | 40.0% |
| TACCGGTAAAATAGAGAAGG+AGG | - | chr8_3:57083049-57083068 | None:intergenic | 40.0% | |
| TCCTCATCAACTAAAACGGA+CGG | - | chr8_3:57083414-57083433 | None:intergenic | 40.0% | |
| CTAGCCGAAAAGATGATTGT+AGG | - | chr8_3:57083786-57083805 | None:intergenic | 40.0% | |
| ! | GAGGACTCTTTTTATGGTGA+TGG | - | chr8_3:57083841-57083860 | None:intergenic | 40.0% |
| AAAAGGATCAGACTACCTTC+CGG | + | chr8_3:57083891-57083910 | Msa1297170:five_prime_UTR | 40.0% | |
| !! | GTATGTTTTGGACCAGATCT+AGG | + | chr8_3:57083942-57083961 | Msa1297170:five_prime_UTR | 40.0% |
| ATTTATCCGTCACCTACCAA+AGG | + | chr8_3:57084667-57084686 | Msa1297170:intron | 40.0% | |
| GGAAATGTTGGATGAACGAA+TGG | - | chr8_3:57084721-57084740 | None:intergenic | 40.0% | |
| !! | TTACTTACCGGTTTCCTTCT+TGG | + | chr8_3:57084859-57084878 | Msa1297170:intron | 40.0% |
| TGCAAAACCAAGAAGGAAAC+CGG | - | chr8_3:57084869-57084888 | None:intergenic | 40.0% | |
| GAAGAAGAAGGGATGGTTTC+AGG | - | chr8_3:57082799-57082818 | None:intergenic | 45.0% | |
| CGGTAAAATAGAGAAGGAGG+AGG | - | chr8_3:57083046-57083065 | None:intergenic | 45.0% | |
| !!! | TCCGTCCGTTTTAGTTGATG+AGG | + | chr8_3:57083410-57083429 | Msa1297170:five_prime_UTR | 45.0% |
| GGACAGCTTTCAAGAGAAGA+TGG | + | chr8_3:57084556-57084575 | Msa1297170:CDS | 45.0% | |
| GTAACACCTTTGGTAGGTGA+CGG | - | chr8_3:57084676-57084695 | None:intergenic | 45.0% | |
| CCAACTCTGCAAAACCAAGA+AGG | - | chr8_3:57084876-57084895 | None:intergenic | 45.0% | |
| !!! | CCTTCTTGGTTTTGCAGAGT+TGG | + | chr8_3:57084873-57084892 | Msa1297170:intron | 45.0% |
| !! | ATACAAAAAATATAATAATT+AGG | - | chr8_3:57083615-57083634 | None:intergenic | 5.0% |
| !! | ATAAATAATTTATAACAAAT+CGG | + | chr8_3:57083689-57083708 | Msa1297170:five_prime_UTR | 5.0% |
| !!! | ATAAATTAATTTTTATTTAC+AGG | + | chr8_3:57084463-57084482 | Msa1297170:intron | 5.0% |
| TGGTTTCAGGCGAGAGAGAA+GGG | - | chr8_3:57082786-57082805 | None:intergenic | 50.0% | |
| ATGGTTTCAGGCGAGAGAGA+AGG | - | chr8_3:57082787-57082806 | None:intergenic | 50.0% | |
| TTGTCGGTGACAGTGGTTCA+TGG | - | chr8_3:57082829-57082848 | None:intergenic | 50.0% | |
| CAAGATTGCAAGCTCCGCTA+CGG | - | chr8_3:57083923-57083942 | None:intergenic | 50.0% | |
| GCGTAAGTTGTCGGTGACAG+TGG | - | chr8_3:57082836-57082855 | None:intergenic | 55.0% | |
| CCTTCCGGTTACCACCGTAG+CGG | + | chr8_3:57083906-57083925 | Msa1297170:five_prime_UTR | 60.0% | |
| AGCTCCGCTACGGTGGTAAC+CGG | - | chr8_3:57083913-57083932 | None:intergenic | 60.0% | |
| GATTGCAAGCTCCGCTACGG+TGG | - | chr8_3:57083920-57083939 | None:intergenic | 60.0% | |
| CCGCTACGGTGGTAACCGGA+AGG | - | chr8_3:57083909-57083928 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 57082671 | 57085366 | 57082671 | ID=Msa1297170;Name=Msa1297170 |
| chr8_3 | mRNA | 57082671 | 57085366 | 57082671 | ID=Msa1297170-mRNA-1;Parent=Msa1297170;Name=Msa1297170-mRNA-1;_AED=0.13;_eAED=0.13;_QI=1370|0.66|0.75|1|0|0|4|337|96 |
| chr8_3 | exon | 57082671 | 57084009 | 57082671 | ID=Msa1297170-mRNA-1:exon:16354;Parent=Msa1297170-mRNA-1 |
| chr8_3 | exon | 57084096 | 57084172 | 57084096 | ID=Msa1297170-mRNA-1:exon:16355;Parent=Msa1297170-mRNA-1 |
| chr8_3 | exon | 57084485 | 57084589 | 57084485 | ID=Msa1297170-mRNA-1:exon:16356;Parent=Msa1297170-mRNA-1 |
| chr8_3 | exon | 57084890 | 57085366 | 57084890 | ID=Msa1297170-mRNA-1:exon:16357;Parent=Msa1297170-mRNA-1 |
| chr8_3 | five_prime_UTR | 57082671 | 57084009 | 57082671 | ID=Msa1297170-mRNA-1:five_prime_utr;Parent=Msa1297170-mRNA-1 |
| chr8_3 | five_prime_UTR | 57084096 | 57084126 | 57084096 | ID=Msa1297170-mRNA-1:five_prime_utr;Parent=Msa1297170-mRNA-1 |
| chr8_3 | CDS | 57084127 | 57084172 | 57084127 | ID=Msa1297170-mRNA-1:cds;Parent=Msa1297170-mRNA-1 |
| chr8_3 | CDS | 57084485 | 57084589 | 57084485 | ID=Msa1297170-mRNA-1:cds;Parent=Msa1297170-mRNA-1 |
| chr8_3 | CDS | 57084890 | 57085029 | 57084890 | ID=Msa1297170-mRNA-1:cds;Parent=Msa1297170-mRNA-1 |
| chr8_3 | three_prime_UTR | 57085030 | 57085366 | 57085030 | ID=Msa1297170-mRNA-1:three_prime_utr;Parent=Msa1297170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
