AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0259230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 110 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGACCATTTGAGGAATT+TGG 0.091335 2_2:+56125019 Msa0259230:CDS
TATTCTTCTGCTTATGGTTT+TGG 0.179425 2_2:+56125694 Msa0259230:three_prime_UTR
GGCTAAGTCCATGTATGTTT+TGG 0.198774 2_2:+56124716 Msa0259230:CDS
GGTATTCTGAAACGCTTATT+TGG 0.210433 2_2:+56125475 Msa0259230:three_prime_UTR
CTACTATCTGATGGTGTTAT+AGG 0.221334 2_2:+56125395 Msa0259230:three_prime_UTR
GGTCATTATTCTTCTGCTTA+TGG 0.225896 2_2:+56125688 Msa0259230:three_prime_UTR
TCCCATTGAATATAACAATT+TGG 0.226031 2_2:+56125305 Msa0259230:three_prime_UTR
ACGTTGCAAACAAAGCAAAA+AGG 0.281082 2_2:-56125341 None:intergenic
CACGGTGCTTGATGTAATAA+AGG 0.314777 2_2:-56123446 None:intergenic
CTCCAAATTGTTATATTCAA+TGG 0.319398 2_2:-56125307 None:intergenic
GATACCTCTGTAGACTATTC+GGG 0.342734 2_2:+56124792 Msa0259230:CDS
TTGTGTACAGCTGGATAAAA+AGG 0.352991 2_2:-56123767 None:intergenic
TGATACCTCTGTAGACTATT+CGG 0.353158 2_2:+56124791 Msa0259230:CDS
ATTGACCATTTGAGGAATTT+GGG 0.370009 2_2:+56125020 Msa0259230:CDS
ATTGAAATATGAATTATGTT+TGG 0.374663 2_2:-56123895 None:intergenic
TCCAAATTGTTATATTCAAT+GGG 0.378237 2_2:-56125306 None:intergenic
TCTCTTTCTTCTTCCTCTGA+TGG 0.381521 2_2:+56123407 Msa0259230:five_prime_UTR
TTGCTTTGTTTGCAACGTTT+AGG 0.389107 2_2:+56125346 Msa0259230:three_prime_UTR
ATCATCTTCGTAATCGTAAT+CGG 0.391487 2_2:-56123977 None:intergenic
ATGGGAAAAGTAAAATCAAA+TGG 0.394524 2_2:-56125288 None:intergenic
TGAAGATGATTGGGAGGTTA+TGG 0.396165 2_2:+56124953 Msa0259230:CDS
AAAGGGAGGCTTTAGCGCTT+AGG 0.397593 2_2:-56123353 None:intergenic
TAACAATTCAACTTTGGTTG+TGG 0.405054 2_2:-56123511 None:intergenic
TTTGAGGAATTTGGGAAGTT+GGG 0.409092 2_2:+56125028 Msa0259230:CDS
AGGAGCAGTATGAAGATGAT+TGG 0.416315 2_2:+56124943 Msa0259230:CDS
GGAGGCATTTGATAACTCTA+AGG 0.416449 2_2:+56124923 Msa0259230:CDS
ATTTGAGGAATTTGGGAAGT+TGG 0.417251 2_2:+56125027 Msa0259230:CDS
AGAAGAGACGAGGTTATGTT+TGG 0.419086 2_2:-56123310 None:intergenic
CTTTAGAGAAATTAATAAGT+AGG 0.420436 2_2:+56125247 Msa0259230:three_prime_UTR
TTTAGCGCTTAGGGTTATAC+AGG 0.421646 2_2:-56123343 None:intergenic
AACAATTCAACTTTGGTTGT+GGG 0.426993 2_2:-56123510 None:intergenic
TAGAATTAACAATTCAACTT+TGG 0.429073 2_2:-56123517 None:intergenic
TTAGTTTGATCTGACGGCTT+AGG 0.429144 2_2:+56123744 Msa0259230:five_prime_UTR
CGACGACGATGCTTGGGATA+AGG 0.434174 2_2:+56124758 Msa0259230:CDS
AAGGGAGGCTTTAGCGCTTA+GGG 0.435258 2_2:-56123352 None:intergenic
GATTGATCTCCCTCCTCAAA+TGG 0.443391 2_2:-56124885 None:intergenic
AAAAGCCGACGACGATGCTT+GGG 0.450005 2_2:+56124752 Msa0259230:CDS
AATTCCTTTGAATGCGCAAA+AGG 0.451717 2_2:-56124666 None:intergenic
GGAGCAGTATGAAGATGATT+GGG 0.452002 2_2:+56124944 Msa0259230:CDS
TGATAAGTGCATTGAAGTCT+TGG 0.459378 2_2:+56124695 Msa0259230:CDS
AACTTCCCAAATTCCTCAAA+TGG 0.460033 2_2:-56125025 None:intergenic
TGGGAGGTTATGGCTGAGAA+GGG 0.462561 2_2:+56124963 Msa0259230:CDS
TCTTGAGACATATATATAGA+TGG 0.462811 2_2:-56123287 None:intergenic
CTCTGGAGAGGAACCATTTG+AGG 0.464363 2_2:+56124872 Msa0259230:CDS
TGTAGAGGACAAGAAGAAAC+AGG 0.466429 2_2:+56125198 Msa0259230:three_prime_UTR
GAAAAGTGTTTGAGACGAAA+GGG 0.470255 2_2:-56123384 None:intergenic
TGATCTACATCTGGTAGATA+AGG 0.477596 2_2:+56124635 Msa0259230:CDS
AGAAAAGTGTTTGAGACGAA+AGG 0.485916 2_2:-56123385 None:intergenic
TGCGTTGCATTGACCATTTG+AGG 0.489610 2_2:+56125012 Msa0259230:CDS
TCATTTCACATGATAGCCAT+TGG 0.494346 2_2:-56123839 None:intergenic
AAATATGAATTATGTTTGGA+GGG 0.497454 2_2:-56123891 None:intergenic
ACGTCTTAATGATCTACATC+TGG 0.497872 2_2:+56124626 Msa0259230:CDS
GAAATATGAATTATGTTTGG+AGG 0.507205 2_2:-56123892 None:intergenic
TATCTACGGTTGTGTACAGC+TGG 0.507817 2_2:-56123776 None:intergenic
GGAGGTTATGGCTGAGAAGG+GGG 0.509261 2_2:+56124965 Msa0259230:CDS
CATTGAATATAACAATTTGG+AGG 0.509995 2_2:+56125308 Msa0259230:three_prime_UTR
TGGGAAAAGTAAAATCAAAT+GGG 0.510457 2_2:-56125287 None:intergenic
TGATCTTAACATCCATCATA+AGG 0.511158 2_2:+56125076 Msa0259230:CDS
ATTGTCCTCATCAAGAGAAA+AGG 0.511944 2_2:-56125126 None:intergenic
TCTTGTACATCTCCTTATGA+TGG 0.516604 2_2:-56125088 None:intergenic
AAAAGAAAGTAAAATCCAAT+GGG 0.521897 2_2:-56125435 None:intergenic
GGGAAGTTGGGACCAACTCA+TGG 0.526539 2_2:+56125040 Msa0259230:CDS
TAGTTGTTAGTTTGATCTGA+CGG 0.529078 2_2:+56123738 Msa0259230:five_prime_UTR
TTGGGAGGTTATGGCTGAGA+AGG 0.529156 2_2:+56124962 Msa0259230:CDS
GGAAGAGGAAAAGAAGAAAG+AGG 0.532453 2_2:+56125163 Msa0259230:CDS
CAGCCACCCCAAAACATACA+TGG 0.532878 2_2:-56124724 None:intergenic
CTTTGTTTGCAACGTTTAGG+TGG 0.533724 2_2:+56125349 Msa0259230:three_prime_UTR
TAAAAGAAAGTAAAATCCAA+TGG 0.534265 2_2:-56125436 None:intergenic
GGGAGGTTATGGCTGAGAAG+GGG 0.538227 2_2:+56124964 Msa0259230:CDS
TAAGAAAGCTCCAAAGGAAG+AGG 0.539537 2_2:+56125148 Msa0259230:CDS
TCACGGGAGACTTAGATCTA+CGG 0.540098 2_2:-56124020 None:intergenic
ACGGTGCTTGATGTAATAAA+GGG 0.542087 2_2:-56123445 None:intergenic
CGCTTAGGGTTATACAGGAG+AGG 0.548084 2_2:-56123338 None:intergenic
CAAGCTTCAACAATCATCAA+TGG 0.548881 2_2:+56123933 Msa0259230:exon
TCTGATACCTCTGAAGACTC+TGG 0.550583 2_2:+56124855 Msa0259230:CDS
ATATTGTTAATAATGCCCAT+TGG 0.552450 2_2:+56125420 Msa0259230:three_prime_UTR
GGACAAGAAGAAACAGGACC+TGG 0.555173 2_2:+56125204 Msa0259230:three_prime_UTR
CTACGGTGTGAAACACGCTT+AGG 0.564072 2_2:-56124003 None:intergenic
GATTAAAACATTCATATCTA+CGG 0.569804 2_2:-56123790 None:intergenic
AGTCATCATTCTCCATGAGT+TGG 0.581036 2_2:-56125052 None:intergenic
ACGAAAGGGAAGATAACAAA+GGG 0.581131 2_2:-56123370 None:intergenic
TCAATCTGAAGTAGATGTTG+AGG 0.583778 2_2:+56124902 Msa0259230:CDS
AATGGCGTCATCTTCTTCCG+TGG 0.589408 2_2:+56123951 Msa0259230:exon
CAGATCAAACTAACAACTAA+CGG 0.595583 2_2:-56123734 None:intergenic
GTGGTAACTGTTGCCATCAG+AGG 0.599667 2_2:-56123420 None:intergenic
TGGAGAGGAACCATTTGAGG+AGG 0.600272 2_2:+56124875 Msa0259230:CDS
CTTATCCCAAGCATCGTCGT+CGG 0.606103 2_2:-56124757 None:intergenic
GGACAATAAGAAAGCTCCAA+AGG 0.608201 2_2:+56125142 Msa0259230:CDS
TACACTATACTACTATCTGA+TGG 0.608406 2_2:+56125386 Msa0259230:three_prime_UTR
ATCTGAAGTAGATGTTGAGG+AGG 0.613206 2_2:+56124905 Msa0259230:CDS
GATCTCACAGCTAAAACCTA+CGG 0.616751 2_2:-56123817 None:intergenic
GCAGTATGAAGATGATTGGG+AGG 0.625808 2_2:+56124947 Msa0259230:CDS
GGAGAGGAACCATTTGAGGA+GGG 0.635868 2_2:+56124876 Msa0259230:CDS
ATATAAAATGATTAAAGACA+CGG 0.638078 2_2:-56123464 None:intergenic
AGGACTGAAGAAAACTGTAG+AGG 0.645554 2_2:+56125183 Msa0259230:exon
TACCTCTGAAGACTCTGGAG+AGG 0.646793 2_2:+56124860 Msa0259230:CDS
GACAAGAAGAAACAGGACCT+GGG 0.647578 2_2:+56125205 Msa0259230:three_prime_UTR
GTAATCGTAATCGGTTTCCA+CGG 0.653333 2_2:-56123968 None:intergenic
ATACCTCTGTAGACTATTCG+GGG 0.654853 2_2:+56124793 Msa0259230:CDS
CTTGATGTAATAAAGGGTGG+TGG 0.654928 2_2:-56123439 None:intergenic
GACGAAAGGGAAGATAACAA+AGG 0.656116 2_2:-56123371 None:intergenic
AGGGTTATACAGGAGAGGAG+AGG 0.668300 2_2:-56123333 None:intergenic
TTCCTCTCCAGAGTCTTCAG+AGG 0.678080 2_2:-56124862 None:intergenic
CTCACACTGTGCTATCACCC+AGG 0.684973 2_2:-56125222 None:intergenic
AGAGGAGAGGAGAAGAGACG+AGG 0.696297 2_2:-56123320 None:intergenic
AAAGGGAAGATAACAAAGGG+AGG 0.703136 2_2:-56123367 None:intergenic
TACCTCTGTAGACTATTCGG+GGG 0.707008 2_2:+56124794 Msa0259230:CDS
ATCAAACTAACAACTAACGG+TGG 0.712221 2_2:-56123731 None:intergenic
GTGCTTGATGTAATAAAGGG+TGG 0.740368 2_2:-56123442 None:intergenic
AGAAAAGGTGAGAAACAACA+CGG 0.759293 2_2:-56125111 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAATGATTAAAGACA+CGG - chr2_2:56123467-56123486 None:intergenic 15.0%
!!! TTTTATATGGAAATTTTACA+TGG + chr2_2:56123479-56123498 Msa0259230:five_prime_UTR 15.0%
!! ATTGAAATATGAATTATGTT+TGG - chr2_2:56123898-56123917 None:intergenic 15.0%
!! TAAGAGAAAAATTAAGAAAA+AGG - chr2_2:56124574-56124593 None:intergenic 15.0%
!!! GATTTTACTTTCTTTTAATA+AGG + chr2_2:56125442-56125461 Msa0259230:three_prime_UTR 15.0%
!! ATATAAAATGATTAAAGACA+CGG - chr2_2:56123467-56123486 None:intergenic 15.0%
!!! TTTTATATGGAAATTTTACA+TGG + chr2_2:56123479-56123498 Msa0259230:five_prime_UTR 15.0%
!! ATTGAAATATGAATTATGTT+TGG - chr2_2:56123898-56123917 None:intergenic 15.0%
!! TAAGAGAAAAATTAAGAAAA+AGG - chr2_2:56124574-56124593 None:intergenic 15.0%
!!! GATTTTACTTTCTTTTAATA+AGG + chr2_2:56125442-56125461 Msa0259230:three_prime_UTR 15.0%
!!! GTGTCTTTAATCATTTTATA+TGG + chr2_2:56123466-56123485 Msa0259230:five_prime_UTR 20.0%
!! TAGAATTAACAATTCAACTT+TGG - chr2_2:56123520-56123539 None:intergenic 20.0%
!! AAGAAAAAAATGAAAGATTG+GGG - chr2_2:56123584-56123603 None:intergenic 20.0%
!! GAAGAAAAAAATGAAAGATT+GGG - chr2_2:56123585-56123604 None:intergenic 20.0%
!! AGAAGAAAAAAATGAAAGAT+TGG - chr2_2:56123586-56123605 None:intergenic 20.0%
!! GATTAAAACATTCATATCTA+CGG - chr2_2:56123793-56123812 None:intergenic 20.0%
!! AAATATGAATTATGTTTGGA+GGG - chr2_2:56123894-56123913 None:intergenic 20.0%
!! TCACAAATGAACATATAAAT+AGG - chr2_2:56124477-56124496 None:intergenic 20.0%
!!! TCCATTTTTTCTAATATTTC+AGG + chr2_2:56124600-56124619 Msa0259230:intron 20.0%
!! ACCTGAAATATTAGAAAAAA+TGG - chr2_2:56124604-56124623 None:intergenic 20.0%
!!! CTTTAGAGAAATTAATAAGT+AGG + chr2_2:56125247-56125266 Msa0259230:three_prime_UTR 20.0%
!! TCCAAATTGTTATATTCAAT+GGG - chr2_2:56125309-56125328 None:intergenic 20.0%
!! AAAAGAAAGTAAAATCCAAT+GGG - chr2_2:56125438-56125457 None:intergenic 20.0%
!! TAAAAGAAAGTAAAATCCAA+TGG - chr2_2:56125439-56125458 None:intergenic 20.0%
!!! TTTTAATAAGGCATTAGTAT+TGG + chr2_2:56125454-56125473 Msa0259230:three_prime_UTR 20.0%
!!! TTATTTGGTTCCTATATAAT+GGG + chr2_2:56125490-56125509 Msa0259230:intron 20.0%
!!! CTTTTAAGTGACATAATAAA+TGG + chr2_2:56125667-56125686 Msa0259230:three_prime_UTR 20.0%
!!! GTGTCTTTAATCATTTTATA+TGG + chr2_2:56123466-56123485 Msa0259230:five_prime_UTR 20.0%
!! TAGAATTAACAATTCAACTT+TGG - chr2_2:56123520-56123539 None:intergenic 20.0%
!! AAGAAAAAAATGAAAGATTG+GGG - chr2_2:56123584-56123603 None:intergenic 20.0%
!! GAAGAAAAAAATGAAAGATT+GGG - chr2_2:56123585-56123604 None:intergenic 20.0%
!! AGAAGAAAAAAATGAAAGAT+TGG - chr2_2:56123586-56123605 None:intergenic 20.0%
!! GATTAAAACATTCATATCTA+CGG - chr2_2:56123793-56123812 None:intergenic 20.0%
!! AAATATGAATTATGTTTGGA+GGG - chr2_2:56123894-56123913 None:intergenic 20.0%
!! TCACAAATGAACATATAAAT+AGG - chr2_2:56124477-56124496 None:intergenic 20.0%
!!! TCCATTTTTTCTAATATTTC+AGG + chr2_2:56124600-56124619 Msa0259230:intron 20.0%
!! ACCTGAAATATTAGAAAAAA+TGG - chr2_2:56124604-56124623 None:intergenic 20.0%
!!! CTTTAGAGAAATTAATAAGT+AGG + chr2_2:56125247-56125266 Msa0259230:three_prime_UTR 20.0%
!! TCCAAATTGTTATATTCAAT+GGG - chr2_2:56125309-56125328 None:intergenic 20.0%
!! AAAAGAAAGTAAAATCCAAT+GGG - chr2_2:56125438-56125457 None:intergenic 20.0%
!! TAAAAGAAAGTAAAATCCAA+TGG - chr2_2:56125439-56125458 None:intergenic 20.0%
!!! TTTTAATAAGGCATTAGTAT+TGG + chr2_2:56125454-56125473 Msa0259230:three_prime_UTR 20.0%
!!! TTATTTGGTTCCTATATAAT+GGG + chr2_2:56125490-56125509 Msa0259230:intron 20.0%
!!! CTTTTAAGTGACATAATAAA+TGG + chr2_2:56125667-56125686 Msa0259230:three_prime_UTR 20.0%
! TCTTGAGACATATATATAGA+TGG - chr2_2:56123290-56123309 None:intergenic 25.0%
! CACGAGAAAAAAAAATACTT+TGG - chr2_2:56123543-56123562 None:intergenic 25.0%
! AGAAAAAAATGAAAGATTGG+GGG - chr2_2:56123583-56123602 None:intergenic 25.0%
! CATTTGAAAAATAGTAGATC+TGG - chr2_2:56123618-56123637 None:intergenic 25.0%
! GAAATATGAATTATGTTTGG+AGG - chr2_2:56123895-56123914 None:intergenic 25.0%
!!! ATCGATAGCTAATTTTTTCA+CGG - chr2_2:56124040-56124059 None:intergenic 25.0%
! TGAAAAAATTAGCTATCGAT+TGG + chr2_2:56124040-56124059 Msa0259230:CDS 25.0%
!! GAAAAAATTAGCTATCGATT+GGG + chr2_2:56124041-56124060 Msa0259230:CDS 25.0%
!! AAAAAATTAGCTATCGATTG+GGG + chr2_2:56124042-56124061 Msa0259230:CDS 25.0%
! TTATATGTTCATTTGTGATC+TGG + chr2_2:56124479-56124498 Msa0259230:intron 25.0%
! TGGGAAAAGTAAAATCAAAT+GGG - chr2_2:56125290-56125309 None:intergenic 25.0%
! ATGGGAAAAGTAAAATCAAA+TGG - chr2_2:56125291-56125310 None:intergenic 25.0%
! TCCCATTGAATATAACAATT+TGG + chr2_2:56125305-56125324 Msa0259230:three_prime_UTR 25.0%
! CTCCAAATTGTTATATTCAA+TGG - chr2_2:56125310-56125329 None:intergenic 25.0%
! CATTGAATATAACAATTTGG+AGG + chr2_2:56125308-56125327 Msa0259230:three_prime_UTR 25.0%
! ATATTGTTAATAATGCCCAT+TGG + chr2_2:56125272-56125291 Msa0259230:three_prime_UTR 25.0%
!! CTTATTTGGTTCCTATATAA+TGG + chr2_2:56125489-56125508 Msa0259230:intron 25.0%
! AATTCTACAACCCATTATAT+AGG - chr2_2:56125503-56125522 None:intergenic 25.0%
! TAGAATTAAAGACATGATAG+TGG + chr2_2:56125516-56125535 Msa0259230:intron 25.0%
!! TGCAAAATATTTTTCCAACT+TGG - chr2_2:56125578-56125597 None:intergenic 25.0%
!!! TCATTTTTGAAGAGTTTTGA+TGG + chr2_2:56125638-56125657 Msa0259230:intron 25.0%
! TCTTGAGACATATATATAGA+TGG - chr2_2:56123290-56123309 None:intergenic 25.0%
! CACGAGAAAAAAAAATACTT+TGG - chr2_2:56123543-56123562 None:intergenic 25.0%
! AGAAAAAAATGAAAGATTGG+GGG - chr2_2:56123583-56123602 None:intergenic 25.0%
! CATTTGAAAAATAGTAGATC+TGG - chr2_2:56123618-56123637 None:intergenic 25.0%
! GAAATATGAATTATGTTTGG+AGG - chr2_2:56123895-56123914 None:intergenic 25.0%
!!! ATCGATAGCTAATTTTTTCA+CGG - chr2_2:56124040-56124059 None:intergenic 25.0%
! TGAAAAAATTAGCTATCGAT+TGG + chr2_2:56124040-56124059 Msa0259230:CDS 25.0%
!! GAAAAAATTAGCTATCGATT+GGG + chr2_2:56124041-56124060 Msa0259230:CDS 25.0%
!! AAAAAATTAGCTATCGATTG+GGG + chr2_2:56124042-56124061 Msa0259230:CDS 25.0%
! TTATATGTTCATTTGTGATC+TGG + chr2_2:56124479-56124498 Msa0259230:intron 25.0%
! TGGGAAAAGTAAAATCAAAT+GGG - chr2_2:56125290-56125309 None:intergenic 25.0%
! ATGGGAAAAGTAAAATCAAA+TGG - chr2_2:56125291-56125310 None:intergenic 25.0%
! TCCCATTGAATATAACAATT+TGG + chr2_2:56125305-56125324 Msa0259230:three_prime_UTR 25.0%
! CTCCAAATTGTTATATTCAA+TGG - chr2_2:56125310-56125329 None:intergenic 25.0%
! CATTGAATATAACAATTTGG+AGG + chr2_2:56125308-56125327 Msa0259230:three_prime_UTR 25.0%
! ATATTGTTAATAATGCCCAT+TGG + chr2_2:56125272-56125291 Msa0259230:three_prime_UTR 25.0%
!! CTTATTTGGTTCCTATATAA+TGG + chr2_2:56125489-56125508 Msa0259230:intron 25.0%
! AATTCTACAACCCATTATAT+AGG - chr2_2:56125503-56125522 None:intergenic 25.0%
! TAGAATTAAAGACATGATAG+TGG + chr2_2:56125516-56125535 Msa0259230:intron 25.0%
!! TGCAAAATATTTTTCCAACT+TGG - chr2_2:56125578-56125597 None:intergenic 25.0%
!!! TCATTTTTGAAGAGTTTTGA+TGG + chr2_2:56125638-56125657 Msa0259230:intron 25.0%
AACAATTCAACTTTGGTTGT+GGG - chr2_2:56123513-56123532 None:intergenic 30.0%
TAACAATTCAACTTTGGTTG+TGG - chr2_2:56123514-56123533 None:intergenic 30.0%
!!! TTCTTCTCGTGATTTTTTTC+TGG + chr2_2:56123654-56123673 Msa0259230:five_prime_UTR 30.0%
CAGATCAAACTAACAACTAA+CGG - chr2_2:56123737-56123756 None:intergenic 30.0%
! TAGTTGTTAGTTTGATCTGA+CGG + chr2_2:56123738-56123757 Msa0259230:five_prime_UTR 30.0%
!!! AATGTTTTAATCGTATCCGT+AGG + chr2_2:56123801-56123820 Msa0259230:five_prime_UTR 30.0%
ATCATCTTCGTAATCGTAAT+CGG - chr2_2:56123980-56123999 None:intergenic 30.0%
!!! TCGATAGCTAATTTTTTCAC+GGG - chr2_2:56124039-56124058 None:intergenic 30.0%
!! GTGTTCATTTGATTTTCTGA+AGG + chr2_2:56124194-56124213 Msa0259230:intron 30.0%
! TGATTCTATTTGAGATGATC+TGG + chr2_2:56124385-56124404 Msa0259230:intron 30.0%
ATTGACCATTTGAGGAATTT+GGG + chr2_2:56125020-56125039 Msa0259230:CDS 30.0%
TGATCTTAACATCCATCATA+AGG + chr2_2:56125076-56125095 Msa0259230:CDS 30.0%
TACACTATACTACTATCTGA+TGG + chr2_2:56125386-56125405 Msa0259230:three_prime_UTR 30.0%
! TATTCTTCTGCTTATGGTTT+TGG + chr2_2:56125694-56125713 Msa0259230:three_prime_UTR 30.0%
AACAATTCAACTTTGGTTGT+GGG - chr2_2:56123513-56123532 None:intergenic 30.0%
TAACAATTCAACTTTGGTTG+TGG - chr2_2:56123514-56123533 None:intergenic 30.0%
!!! TTCTTCTCGTGATTTTTTTC+TGG + chr2_2:56123654-56123673 Msa0259230:five_prime_UTR 30.0%
CAGATCAAACTAACAACTAA+CGG - chr2_2:56123737-56123756 None:intergenic 30.0%
! TAGTTGTTAGTTTGATCTGA+CGG + chr2_2:56123738-56123757 Msa0259230:five_prime_UTR 30.0%
!!! AATGTTTTAATCGTATCCGT+AGG + chr2_2:56123801-56123820 Msa0259230:five_prime_UTR 30.0%
ATCATCTTCGTAATCGTAAT+CGG - chr2_2:56123980-56123999 None:intergenic 30.0%
!!! TCGATAGCTAATTTTTTCAC+GGG - chr2_2:56124039-56124058 None:intergenic 30.0%
!! GTGTTCATTTGATTTTCTGA+AGG + chr2_2:56124194-56124213 Msa0259230:intron 30.0%
! TGATTCTATTTGAGATGATC+TGG + chr2_2:56124385-56124404 Msa0259230:intron 30.0%
ATTGACCATTTGAGGAATTT+GGG + chr2_2:56125020-56125039 Msa0259230:CDS 30.0%
TGATCTTAACATCCATCATA+AGG + chr2_2:56125076-56125095 Msa0259230:CDS 30.0%
TACACTATACTACTATCTGA+TGG + chr2_2:56125386-56125405 Msa0259230:three_prime_UTR 30.0%
! TATTCTTCTGCTTATGGTTT+TGG + chr2_2:56125694-56125713 Msa0259230:three_prime_UTR 30.0%
ACGAAAGGGAAGATAACAAA+GGG - chr2_2:56123373-56123392 None:intergenic 35.0%
!! GAAAAGTGTTTGAGACGAAA+GGG - chr2_2:56123387-56123406 None:intergenic 35.0%
!! AGAAAAGTGTTTGAGACGAA+AGG - chr2_2:56123388-56123407 None:intergenic 35.0%
ACGGTGCTTGATGTAATAAA+GGG - chr2_2:56123448-56123467 None:intergenic 35.0%
ATCAAACTAACAACTAACGG+TGG - chr2_2:56123734-56123753 None:intergenic 35.0%
TTGTGTACAGCTGGATAAAA+AGG - chr2_2:56123770-56123789 None:intergenic 35.0%
TCATTTCACATGATAGCCAT+TGG - chr2_2:56123842-56123861 None:intergenic 35.0%
CAAGCTTCAACAATCATCAA+TGG + chr2_2:56123933-56123952 Msa0259230:exon 35.0%
AAAAACCTTCAGATCTCGAA+TGG - chr2_2:56124119-56124138 None:intergenic 35.0%
!! CGTTGATTCGTTATCATATG+CGG + chr2_2:56124172-56124191 Msa0259230:intron 35.0%
AAAAACCTTCAGATCTCGAA+TGG - chr2_2:56124119-56124138 None:intergenic 35.0%
!! CGTTGATTCGTTATCATATG+CGG + chr2_2:56124172-56124191 Msa0259230:intron 35.0%
ACGTCTTAATGATCTACATC+TGG + chr2_2:56124626-56124645 Msa0259230:CDS 35.0%
TGATCTACATCTGGTAGATA+AGG + chr2_2:56124635-56124654 Msa0259230:CDS 35.0%
AATTCCTTTGAATGCGCAAA+AGG - chr2_2:56124669-56124688 None:intergenic 35.0%
TGATAAGTGCATTGAAGTCT+TGG + chr2_2:56124695-56124714 Msa0259230:CDS 35.0%
! GCTAAGTCCATGTATGTTTT+GGG + chr2_2:56124717-56124736 Msa0259230:CDS 35.0%
! CTAAGTCCATGTATGTTTTG+GGG + chr2_2:56124718-56124737 Msa0259230:CDS 35.0%
TGATACCTCTGTAGACTATT+CGG + chr2_2:56124791-56124810 Msa0259230:CDS 35.0%
! TCAATCTGAAGTAGATGTTG+AGG + chr2_2:56124902-56124921 Msa0259230:CDS 35.0%
CATTGACCATTTGAGGAATT+TGG + chr2_2:56125019-56125038 Msa0259230:CDS 35.0%
AACTTCCCAAATTCCTCAAA+TGG - chr2_2:56125028-56125047 None:intergenic 35.0%
ATTTGAGGAATTTGGGAAGT+TGG + chr2_2:56125027-56125046 Msa0259230:CDS 35.0%
TTTGAGGAATTTGGGAAGTT+GGG + chr2_2:56125028-56125047 Msa0259230:CDS 35.0%
TCTTGTACATCTCCTTATGA+TGG - chr2_2:56125091-56125110 None:intergenic 35.0%
AGAAAAGGTGAGAAACAACA+CGG - chr2_2:56125114-56125133 None:intergenic 35.0%
ATTGTCCTCATCAAGAGAAA+AGG - chr2_2:56125129-56125148 None:intergenic 35.0%
! TTCTTCTTTTCCTCTTCCTT+TGG - chr2_2:56125161-56125180 None:intergenic 35.0%
GTTGCAAACAAAGCAAAAAG+GGG - chr2_2:56125342-56125361 None:intergenic 35.0%
CGTTGCAAACAAAGCAAAAA+GGG - chr2_2:56125343-56125362 None:intergenic 35.0%
ACGTTGCAAACAAAGCAAAA+AGG - chr2_2:56125344-56125363 None:intergenic 35.0%
!! TTGCTTTGTTTGCAACGTTT+AGG + chr2_2:56125346-56125365 Msa0259230:three_prime_UTR 35.0%
!! TTTAGGTGGATTTTGCTTGT+TGG + chr2_2:56125363-56125382 Msa0259230:three_prime_UTR 35.0%
!! CTACTATCTGATGGTGTTAT+AGG + chr2_2:56125395-56125414 Msa0259230:three_prime_UTR 35.0%
!! GGTATTCTGAAACGCTTATT+TGG + chr2_2:56125475-56125494 Msa0259230:three_prime_UTR 35.0%
GGTCATTATTCTTCTGCTTA+TGG + chr2_2:56125688-56125707 Msa0259230:three_prime_UTR 35.0%
ACGAAAGGGAAGATAACAAA+GGG - chr2_2:56123373-56123392 None:intergenic 35.0%
!! GAAAAGTGTTTGAGACGAAA+GGG - chr2_2:56123387-56123406 None:intergenic 35.0%
!! AGAAAAGTGTTTGAGACGAA+AGG - chr2_2:56123388-56123407 None:intergenic 35.0%
ACGGTGCTTGATGTAATAAA+GGG - chr2_2:56123448-56123467 None:intergenic 35.0%
ATCAAACTAACAACTAACGG+TGG - chr2_2:56123734-56123753 None:intergenic 35.0%
TTGTGTACAGCTGGATAAAA+AGG - chr2_2:56123770-56123789 None:intergenic 35.0%
TCATTTCACATGATAGCCAT+TGG - chr2_2:56123842-56123861 None:intergenic 35.0%
CAAGCTTCAACAATCATCAA+TGG + chr2_2:56123933-56123952 Msa0259230:exon 35.0%
AAAAACCTTCAGATCTCGAA+TGG - chr2_2:56124119-56124138 None:intergenic 35.0%
!! CGTTGATTCGTTATCATATG+CGG + chr2_2:56124172-56124191 Msa0259230:intron 35.0%
AAAAACCTTCAGATCTCGAA+TGG - chr2_2:56124119-56124138 None:intergenic 35.0%
!! CGTTGATTCGTTATCATATG+CGG + chr2_2:56124172-56124191 Msa0259230:intron 35.0%
ACGTCTTAATGATCTACATC+TGG + chr2_2:56124626-56124645 Msa0259230:CDS 35.0%
TGATCTACATCTGGTAGATA+AGG + chr2_2:56124635-56124654 Msa0259230:CDS 35.0%
AATTCCTTTGAATGCGCAAA+AGG - chr2_2:56124669-56124688 None:intergenic 35.0%
TGATAAGTGCATTGAAGTCT+TGG + chr2_2:56124695-56124714 Msa0259230:CDS 35.0%
! GCTAAGTCCATGTATGTTTT+GGG + chr2_2:56124717-56124736 Msa0259230:CDS 35.0%
! CTAAGTCCATGTATGTTTTG+GGG + chr2_2:56124718-56124737 Msa0259230:CDS 35.0%
TGATACCTCTGTAGACTATT+CGG + chr2_2:56124791-56124810 Msa0259230:CDS 35.0%
! TCAATCTGAAGTAGATGTTG+AGG + chr2_2:56124902-56124921 Msa0259230:CDS 35.0%
CATTGACCATTTGAGGAATT+TGG + chr2_2:56125019-56125038 Msa0259230:CDS 35.0%
AACTTCCCAAATTCCTCAAA+TGG - chr2_2:56125028-56125047 None:intergenic 35.0%
ATTTGAGGAATTTGGGAAGT+TGG + chr2_2:56125027-56125046 Msa0259230:CDS 35.0%
TTTGAGGAATTTGGGAAGTT+GGG + chr2_2:56125028-56125047 Msa0259230:CDS 35.0%
TCTTGTACATCTCCTTATGA+TGG - chr2_2:56125091-56125110 None:intergenic 35.0%
AGAAAAGGTGAGAAACAACA+CGG - chr2_2:56125114-56125133 None:intergenic 35.0%
ATTGTCCTCATCAAGAGAAA+AGG - chr2_2:56125129-56125148 None:intergenic 35.0%
! TTCTTCTTTTCCTCTTCCTT+TGG - chr2_2:56125161-56125180 None:intergenic 35.0%
GTTGCAAACAAAGCAAAAAG+GGG - chr2_2:56125342-56125361 None:intergenic 35.0%
CGTTGCAAACAAAGCAAAAA+GGG - chr2_2:56125343-56125362 None:intergenic 35.0%
ACGTTGCAAACAAAGCAAAA+AGG - chr2_2:56125344-56125363 None:intergenic 35.0%
!! TTGCTTTGTTTGCAACGTTT+AGG + chr2_2:56125346-56125365 Msa0259230:three_prime_UTR 35.0%
!! TTTAGGTGGATTTTGCTTGT+TGG + chr2_2:56125363-56125382 Msa0259230:three_prime_UTR 35.0%
!! CTACTATCTGATGGTGTTAT+AGG + chr2_2:56125395-56125414 Msa0259230:three_prime_UTR 35.0%
!! GGTATTCTGAAACGCTTATT+TGG + chr2_2:56125475-56125494 Msa0259230:three_prime_UTR 35.0%
GGTCATTATTCTTCTGCTTA+TGG + chr2_2:56125688-56125707 Msa0259230:three_prime_UTR 35.0%
AGAAGAGACGAGGTTATGTT+TGG - chr2_2:56123313-56123332 None:intergenic 40.0%
TTTAGCGCTTAGGGTTATAC+AGG - chr2_2:56123346-56123365 None:intergenic 40.0%
AAAGGGAAGATAACAAAGGG+AGG - chr2_2:56123370-56123389 None:intergenic 40.0%
GACGAAAGGGAAGATAACAA+AGG - chr2_2:56123374-56123393 None:intergenic 40.0%
TCTCTTTCTTCTTCCTCTGA+TGG + chr2_2:56123407-56123426 Msa0259230:five_prime_UTR 40.0%
CTTGATGTAATAAAGGGTGG+TGG - chr2_2:56123442-56123461 None:intergenic 40.0%
GTGCTTGATGTAATAAAGGG+TGG - chr2_2:56123445-56123464 None:intergenic 40.0%
CACGGTGCTTGATGTAATAA+AGG - chr2_2:56123449-56123468 None:intergenic 40.0%
! TTAGTTTGATCTGACGGCTT+AGG + chr2_2:56123744-56123763 Msa0259230:five_prime_UTR 40.0%
GATCTCACAGCTAAAACCTA+CGG - chr2_2:56123820-56123839 None:intergenic 40.0%
!!! GTTTTAGCTGTGAGATCCAA+TGG + chr2_2:56123823-56123842 Msa0259230:five_prime_UTR 40.0%
! GTAATCGTAATCGGTTTCCA+CGG - chr2_2:56123971-56123990 None:intergenic 40.0%
TGATTCCATTCGAGATCTGA+AGG + chr2_2:56124111-56124130 Msa0259230:intron 40.0%
TGATTCCATTCGAGATCTGA+AGG + chr2_2:56124111-56124130 Msa0259230:intron 40.0%
! ACATCCTTTTGCGCATTCAA+AGG + chr2_2:56124662-56124681 Msa0259230:CDS 40.0%
! GGCTAAGTCCATGTATGTTT+TGG + chr2_2:56124716-56124735 Msa0259230:CDS 40.0%
GATACCTCTGTAGACTATTC+GGG + chr2_2:56124792-56124811 Msa0259230:CDS 40.0%
ATACCTCTGTAGACTATTCG+GGG + chr2_2:56124793-56124812 Msa0259230:CDS 40.0%
TATTCGGGGGAACTTGATTT+GGG + chr2_2:56124807-56124826 Msa0259230:CDS 40.0%
TTTGGGGGAACAATCTGATA+AGG + chr2_2:56124824-56124843 Msa0259230:CDS 40.0%
! ATCTGAAGTAGATGTTGAGG+AGG + chr2_2:56124905-56124924 Msa0259230:CDS 40.0%
!! GGAGGCATTTGATAACTCTA+AGG + chr2_2:56124923-56124942 Msa0259230:CDS 40.0%
AGGAGCAGTATGAAGATGAT+TGG + chr2_2:56124943-56124962 Msa0259230:CDS 40.0%
GGAGCAGTATGAAGATGATT+GGG + chr2_2:56124944-56124963 Msa0259230:CDS 40.0%
TGAAGATGATTGGGAGGTTA+TGG + chr2_2:56124953-56124972 Msa0259230:CDS 40.0%
AGTCATCATTCTCCATGAGT+TGG - chr2_2:56125055-56125074 None:intergenic 40.0%
! TCTCACCTTTTCTCTTGATG+AGG + chr2_2:56125121-56125140 Msa0259230:CDS 40.0%
GGACAATAAGAAAGCTCCAA+AGG + chr2_2:56125142-56125161 Msa0259230:CDS 40.0%
TAAGAAAGCTCCAAAGGAAG+AGG + chr2_2:56125148-56125167 Msa0259230:CDS 40.0%
GGAAGAGGAAAAGAAGAAAG+AGG + chr2_2:56125163-56125182 Msa0259230:CDS 40.0%
AGGACTGAAGAAAACTGTAG+AGG + chr2_2:56125183-56125202 Msa0259230:exon 40.0%
TGTAGAGGACAAGAAGAAAC+AGG + chr2_2:56125198-56125217 Msa0259230:three_prime_UTR 40.0%
! CTTTGTTTGCAACGTTTAGG+TGG + chr2_2:56125349-56125368 Msa0259230:three_prime_UTR 40.0%
! TTTTCCAACTTGGACACTAC+TGG - chr2_2:56125568-56125587 None:intergenic 40.0%
AGAAGAGACGAGGTTATGTT+TGG - chr2_2:56123313-56123332 None:intergenic 40.0%
TTTAGCGCTTAGGGTTATAC+AGG - chr2_2:56123346-56123365 None:intergenic 40.0%
AAAGGGAAGATAACAAAGGG+AGG - chr2_2:56123370-56123389 None:intergenic 40.0%
GACGAAAGGGAAGATAACAA+AGG - chr2_2:56123374-56123393 None:intergenic 40.0%
TCTCTTTCTTCTTCCTCTGA+TGG + chr2_2:56123407-56123426 Msa0259230:five_prime_UTR 40.0%
CTTGATGTAATAAAGGGTGG+TGG - chr2_2:56123442-56123461 None:intergenic 40.0%
GTGCTTGATGTAATAAAGGG+TGG - chr2_2:56123445-56123464 None:intergenic 40.0%
CACGGTGCTTGATGTAATAA+AGG - chr2_2:56123449-56123468 None:intergenic 40.0%
! TTAGTTTGATCTGACGGCTT+AGG + chr2_2:56123744-56123763 Msa0259230:five_prime_UTR 40.0%
GATCTCACAGCTAAAACCTA+CGG - chr2_2:56123820-56123839 None:intergenic 40.0%
!!! GTTTTAGCTGTGAGATCCAA+TGG + chr2_2:56123823-56123842 Msa0259230:five_prime_UTR 40.0%
! GTAATCGTAATCGGTTTCCA+CGG - chr2_2:56123971-56123990 None:intergenic 40.0%
TGATTCCATTCGAGATCTGA+AGG + chr2_2:56124111-56124130 Msa0259230:intron 40.0%
TGATTCCATTCGAGATCTGA+AGG + chr2_2:56124111-56124130 Msa0259230:intron 40.0%
! ACATCCTTTTGCGCATTCAA+AGG + chr2_2:56124662-56124681 Msa0259230:CDS 40.0%
! GGCTAAGTCCATGTATGTTT+TGG + chr2_2:56124716-56124735 Msa0259230:CDS 40.0%
GATACCTCTGTAGACTATTC+GGG + chr2_2:56124792-56124811 Msa0259230:CDS 40.0%
ATACCTCTGTAGACTATTCG+GGG + chr2_2:56124793-56124812 Msa0259230:CDS 40.0%
TATTCGGGGGAACTTGATTT+GGG + chr2_2:56124807-56124826 Msa0259230:CDS 40.0%
TTTGGGGGAACAATCTGATA+AGG + chr2_2:56124824-56124843 Msa0259230:CDS 40.0%
! ATCTGAAGTAGATGTTGAGG+AGG + chr2_2:56124905-56124924 Msa0259230:CDS 40.0%
!! GGAGGCATTTGATAACTCTA+AGG + chr2_2:56124923-56124942 Msa0259230:CDS 40.0%
AGGAGCAGTATGAAGATGAT+TGG + chr2_2:56124943-56124962 Msa0259230:CDS 40.0%
GGAGCAGTATGAAGATGATT+GGG + chr2_2:56124944-56124963 Msa0259230:CDS 40.0%
TGAAGATGATTGGGAGGTTA+TGG + chr2_2:56124953-56124972 Msa0259230:CDS 40.0%
AGTCATCATTCTCCATGAGT+TGG - chr2_2:56125055-56125074 None:intergenic 40.0%
! TCTCACCTTTTCTCTTGATG+AGG + chr2_2:56125121-56125140 Msa0259230:CDS 40.0%
GGACAATAAGAAAGCTCCAA+AGG + chr2_2:56125142-56125161 Msa0259230:CDS 40.0%
TAAGAAAGCTCCAAAGGAAG+AGG + chr2_2:56125148-56125167 Msa0259230:CDS 40.0%
GGAAGAGGAAAAGAAGAAAG+AGG + chr2_2:56125163-56125182 Msa0259230:CDS 40.0%
AGGACTGAAGAAAACTGTAG+AGG + chr2_2:56125183-56125202 Msa0259230:exon 40.0%
TGTAGAGGACAAGAAGAAAC+AGG + chr2_2:56125198-56125217 Msa0259230:three_prime_UTR 40.0%
! CTTTGTTTGCAACGTTTAGG+TGG + chr2_2:56125349-56125368 Msa0259230:three_prime_UTR 40.0%
! TTTTCCAACTTGGACACTAC+TGG - chr2_2:56125568-56125587 None:intergenic 40.0%
TATCTACGGTTGTGTACAGC+TGG - chr2_2:56123779-56123798 None:intergenic 45.0%
TCACGGGAGACTTAGATCTA+CGG - chr2_2:56124023-56124042 None:intergenic 45.0%
!!! AGTCCATGTATGTTTTGGGG+TGG + chr2_2:56124721-56124740 Msa0259230:CDS 45.0%
TACCTCTGTAGACTATTCGG+GGG + chr2_2:56124794-56124813 Msa0259230:CDS 45.0%
CTATTCGGGGGAACTTGATT+TGG + chr2_2:56124806-56124825 Msa0259230:CDS 45.0%
! ATTCGGGGGAACTTGATTTG+GGG + chr2_2:56124808-56124827 Msa0259230:CDS 45.0%
! TCTGATACCTCTGAAGACTC+TGG + chr2_2:56124855-56124874 Msa0259230:CDS 45.0%
GATTGATCTCCCTCCTCAAA+TGG - chr2_2:56124888-56124907 None:intergenic 45.0%
GCAGTATGAAGATGATTGGG+AGG + chr2_2:56124947-56124966 Msa0259230:CDS 45.0%
! TGCGTTGCATTGACCATTTG+AGG + chr2_2:56125012-56125031 Msa0259230:CDS 45.0%
GACAAGAAGAAACAGGACCT+GGG + chr2_2:56125205-56125224 Msa0259230:three_prime_UTR 45.0%
TCATCCAGTAGTGTCCAAGT+TGG + chr2_2:56125561-56125580 Msa0259230:intron 45.0%
TATCTACGGTTGTGTACAGC+TGG - chr2_2:56123779-56123798 None:intergenic 45.0%
TCACGGGAGACTTAGATCTA+CGG - chr2_2:56124023-56124042 None:intergenic 45.0%
!!! AGTCCATGTATGTTTTGGGG+TGG + chr2_2:56124721-56124740 Msa0259230:CDS 45.0%
TACCTCTGTAGACTATTCGG+GGG + chr2_2:56124794-56124813 Msa0259230:CDS 45.0%
CTATTCGGGGGAACTTGATT+TGG + chr2_2:56124806-56124825 Msa0259230:CDS 45.0%
! ATTCGGGGGAACTTGATTTG+GGG + chr2_2:56124808-56124827 Msa0259230:CDS 45.0%
! TCTGATACCTCTGAAGACTC+TGG + chr2_2:56124855-56124874 Msa0259230:CDS 45.0%
GATTGATCTCCCTCCTCAAA+TGG - chr2_2:56124888-56124907 None:intergenic 45.0%
GCAGTATGAAGATGATTGGG+AGG + chr2_2:56124947-56124966 Msa0259230:CDS 45.0%
! TGCGTTGCATTGACCATTTG+AGG + chr2_2:56125012-56125031 Msa0259230:CDS 45.0%
GACAAGAAGAAACAGGACCT+GGG + chr2_2:56125205-56125224 Msa0259230:three_prime_UTR 45.0%
TCATCCAGTAGTGTCCAAGT+TGG + chr2_2:56125561-56125580 Msa0259230:intron 45.0%
AGGGTTATACAGGAGAGGAG+AGG - chr2_2:56123336-56123355 None:intergenic 50.0%
CGCTTAGGGTTATACAGGAG+AGG - chr2_2:56123341-56123360 None:intergenic 50.0%
! AAGGGAGGCTTTAGCGCTTA+GGG - chr2_2:56123355-56123374 None:intergenic 50.0%
! AAAGGGAGGCTTTAGCGCTT+AGG - chr2_2:56123356-56123375 None:intergenic 50.0%
GTGGTAACTGTTGCCATCAG+AGG - chr2_2:56123423-56123442 None:intergenic 50.0%
AATGGCGTCATCTTCTTCCG+TGG + chr2_2:56123951-56123970 Msa0259230:exon 50.0%
CTACGGTGTGAAACACGCTT+AGG - chr2_2:56124006-56124025 None:intergenic 50.0%
CAGCCACCCCAAAACATACA+TGG - chr2_2:56124727-56124746 None:intergenic 50.0%
AAAAAGCCGACGACGATGCT+TGG + chr2_2:56124751-56124770 Msa0259230:CDS 50.0%
AAAAGCCGACGACGATGCTT+GGG + chr2_2:56124752-56124771 Msa0259230:CDS 50.0%
! CTTATCCCAAGCATCGTCGT+CGG - chr2_2:56124760-56124779 None:intergenic 50.0%
TTCCCCCGAATAGTCTACAG+AGG - chr2_2:56124799-56124818 None:intergenic 50.0%
!! TTCGGGGGAACTTGATTTGG+GGG + chr2_2:56124809-56124828 Msa0259230:CDS 50.0%
! TACCTCTGAAGACTCTGGAG+AGG + chr2_2:56124860-56124879 Msa0259230:CDS 50.0%
TTCCTCTCCAGAGTCTTCAG+AGG - chr2_2:56124865-56124884 None:intergenic 50.0%
! CTCTGGAGAGGAACCATTTG+AGG + chr2_2:56124872-56124891 Msa0259230:CDS 50.0%
TGGAGAGGAACCATTTGAGG+AGG + chr2_2:56124875-56124894 Msa0259230:CDS 50.0%
GGAGAGGAACCATTTGAGGA+GGG + chr2_2:56124876-56124895 Msa0259230:CDS 50.0%
TTGGGAGGTTATGGCTGAGA+AGG + chr2_2:56124962-56124981 Msa0259230:CDS 50.0%
TGGGAGGTTATGGCTGAGAA+GGG + chr2_2:56124963-56124982 Msa0259230:CDS 50.0%
GGACAAGAAGAAACAGGACC+TGG + chr2_2:56125204-56125223 Msa0259230:three_prime_UTR 50.0%
AGGGTTATACAGGAGAGGAG+AGG - chr2_2:56123336-56123355 None:intergenic 50.0%
CGCTTAGGGTTATACAGGAG+AGG - chr2_2:56123341-56123360 None:intergenic 50.0%
! AAGGGAGGCTTTAGCGCTTA+GGG - chr2_2:56123355-56123374 None:intergenic 50.0%
! AAAGGGAGGCTTTAGCGCTT+AGG - chr2_2:56123356-56123375 None:intergenic 50.0%
GTGGTAACTGTTGCCATCAG+AGG - chr2_2:56123423-56123442 None:intergenic 50.0%
AATGGCGTCATCTTCTTCCG+TGG + chr2_2:56123951-56123970 Msa0259230:exon 50.0%
CTACGGTGTGAAACACGCTT+AGG - chr2_2:56124006-56124025 None:intergenic 50.0%
CAGCCACCCCAAAACATACA+TGG - chr2_2:56124727-56124746 None:intergenic 50.0%
AAAAAGCCGACGACGATGCT+TGG + chr2_2:56124751-56124770 Msa0259230:CDS 50.0%
AAAAGCCGACGACGATGCTT+GGG + chr2_2:56124752-56124771 Msa0259230:CDS 50.0%
! CTTATCCCAAGCATCGTCGT+CGG - chr2_2:56124760-56124779 None:intergenic 50.0%
TTCCCCCGAATAGTCTACAG+AGG - chr2_2:56124799-56124818 None:intergenic 50.0%
!! TTCGGGGGAACTTGATTTGG+GGG + chr2_2:56124809-56124828 Msa0259230:CDS 50.0%
! TACCTCTGAAGACTCTGGAG+AGG + chr2_2:56124860-56124879 Msa0259230:CDS 50.0%
TTCCTCTCCAGAGTCTTCAG+AGG - chr2_2:56124865-56124884 None:intergenic 50.0%
! CTCTGGAGAGGAACCATTTG+AGG + chr2_2:56124872-56124891 Msa0259230:CDS 50.0%
TGGAGAGGAACCATTTGAGG+AGG + chr2_2:56124875-56124894 Msa0259230:CDS 50.0%
GGAGAGGAACCATTTGAGGA+GGG + chr2_2:56124876-56124895 Msa0259230:CDS 50.0%
TTGGGAGGTTATGGCTGAGA+AGG + chr2_2:56124962-56124981 Msa0259230:CDS 50.0%
TGGGAGGTTATGGCTGAGAA+GGG + chr2_2:56124963-56124982 Msa0259230:CDS 50.0%
GGACAAGAAGAAACAGGACC+TGG + chr2_2:56125204-56125223 Msa0259230:three_prime_UTR 50.0%
AGAGGAGAGGAGAAGAGACG+AGG - chr2_2:56123323-56123342 None:intergenic 55.0%
CGACGACGATGCTTGGGATA+AGG + chr2_2:56124758-56124777 Msa0259230:CDS 55.0%
GGGAGGTTATGGCTGAGAAG+GGG + chr2_2:56124964-56124983 Msa0259230:CDS 55.0%
GGAGGTTATGGCTGAGAAGG+GGG + chr2_2:56124965-56124984 Msa0259230:CDS 55.0%
GGGAAGTTGGGACCAACTCA+TGG + chr2_2:56125040-56125059 Msa0259230:CDS 55.0%
CTCACACTGTGCTATCACCC+AGG - chr2_2:56125225-56125244 None:intergenic 55.0%
AGAGGAGAGGAGAAGAGACG+AGG - chr2_2:56123323-56123342 None:intergenic 55.0%
CGACGACGATGCTTGGGATA+AGG + chr2_2:56124758-56124777 Msa0259230:CDS 55.0%
GGGAGGTTATGGCTGAGAAG+GGG + chr2_2:56124964-56124983 Msa0259230:CDS 55.0%
GGAGGTTATGGCTGAGAAGG+GGG + chr2_2:56124965-56124984 Msa0259230:CDS 55.0%
GGGAAGTTGGGACCAACTCA+TGG + chr2_2:56125040-56125059 Msa0259230:CDS 55.0%
CTCACACTGTGCTATCACCC+AGG - chr2_2:56125225-56125244 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 56123287 56125734 56123287 ID=Msa0259230;Name=Msa0259230
chr2_2 mRNA 56123287 56125734 56123287 ID=Msa0259230-mRNA-1;Parent=Msa0259230;Name=Msa0259230-mRNA-1;_AED=0.11;_eAED=0.11;_QI=665|1|1|1|0.5|0.33|3|389|226
chr2_2 exon 56123287 56124063 56123287 ID=Msa0259230-mRNA-1:exon:16938;Parent=Msa0259230-mRNA-1
chr2_2 exon 56124622 56125496 56124622 ID=Msa0259230-mRNA-1:exon:16939;Parent=Msa0259230-mRNA-1
chr2_2 exon 56125652 56125734 56125652 ID=Msa0259230-mRNA-1:exon:16940;Parent=Msa0259230-mRNA-1
chr2_2 five_prime_UTR 56123287 56123951 56123287 ID=Msa0259230-mRNA-1:five_prime_utr;Parent=Msa0259230-mRNA-1
chr2_2 CDS 56123952 56124063 56123952 ID=Msa0259230-mRNA-1:cds;Parent=Msa0259230-mRNA-1
chr2_2 CDS 56124622 56125190 56124622 ID=Msa0259230-mRNA-1:cds;Parent=Msa0259230-mRNA-1
chr2_2 three_prime_UTR 56125191 56125496 56125191 ID=Msa0259230-mRNA-1:three_prime_utr;Parent=Msa0259230-mRNA-1
chr2_2 three_prime_UTR 56125652 56125734 56125652 ID=Msa0259230-mRNA-1:three_prime_utr;Parent=Msa0259230-mRNA-1
Gene Sequence

>Msa0259230

ATGGCGTCATCTTCTTCCGTGGAAACCGATTACGATTACGAAGATGATTTTCCTAAGCGTGTTTCACACCGTAGATCTAAGTCTCCCGTGAAAAAATTAGCTATCGATTGGGGTGCACGTCTTAATGATCTACATCTGGTAGATAAGGATCTACATCCTTTTGCGCATTCAAAGGAATTGTATCGTGATAAGTGCATTGAAGTCTTGGCTAAGTCCATGTATGTTTTGGGGTGGCTGCGTGAAAAAGCCGACGACGATGCTTGGGATAAGGTATCTGACTCTGATACCTCTGTAGACTATTCGGGGGAACTTGATTTGGGGGAACAATCTGATAAGGAATATGACTCTGATACCTCTGAAGACTCTGGAGAGGAACCATTTGAGGAGGGAGATCAATCTGAAGTAGATGTTGAGGAGGCATTTGATAACTCTAAGGAGCAGTATGAAGATGATTGGGAGGTTATGGCTGAGAAGGGGGTTTTTCACTGCAGAGATGATGTGTTGCGTTGCATTGACCATTTGAGGAATTTGGGAAGTTGGGACCAACTCATGGAGAATGATGACTATGATCTTAACATCCATCATAAGGAGATGTACAAGACCGTGTTGTTTCTCACCTTTTCTCTTGATGAGGACAATAAGAAAGCTCCAAAGGAAGAGGAAAAGAAGAAAGAGGACTGA

Protein sequence

>Msa0259230

MASSSSVETDYDYEDDFPKRVSHRRSKSPVKKLAIDWGARLNDLHLVDKDLHPFAHSKELYRDKCIEVLAKSMYVLGWLREKADDDAWDKVSDSDTSVDYSGELDLGEQSDKEYDSDTSEDSGEEPFEEGDQSEVDVEEAFDNSKEQYEDDWEVMAEKGVFHCRDDVLRCIDHLRNLGSWDQLMENDDYDLNIHHKEMYKTVLFLTFSLDEDNKKAPKEEEKKKED*