AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0171280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171280 MtrunA17_Chr1g0189361 99.107 224 2 0 1 224 1 224 1.93e-167 460
Msa0171280 MtrunA17_Chr7g0214241 64.651 215 64 2 13 223 14 220 7.10e-96 279
Msa0171280 MtrunA17_Chr7g0234201 73.889 180 47 0 13 192 12 191 6.44e-93 271
Msa0171280 MtrunA17_Chr4g0032201 59.906 212 78 3 12 223 10 214 4.91e-88 259
Msa0171280 MtrunA17_Chr8g0381841 62.887 194 72 0 12 205 15 208 9.46e-87 256
Msa0171280 MtrunA17_Chr3g0123821 57.820 211 86 1 12 222 14 221 2.80e-85 252
Msa0171280 MtrunA17_Chr7g0231131 55.450 211 90 1 12 222 13 219 2.24e-82 244
Msa0171280 MtrunA17_Chr2g0276941 55.556 216 91 2 8 223 9 219 2.76e-82 244
Msa0171280 MtrunA17_Chr1g0174281 55.660 212 91 3 12 222 13 222 5.67e-82 244
Msa0171280 MtrunA17_Chr3g0112681 55.605 223 91 4 1 223 1 215 9.78e-82 243
Msa0171280 MtrunA17_Chr4g0040781 57.075 212 85 3 12 223 11 216 1.35e-80 240
Msa0171280 MtrunA17_Chr2g0283131 56.604 212 86 3 12 223 11 216 3.44e-80 239
Msa0171280 MtrunA17_Chr2g0319951 63.006 173 64 0 12 184 11 183 2.04e-79 237
Msa0171280 MtrunA17_Chr4g0046261 55.189 212 89 3 12 223 11 216 2.99e-79 236
Msa0171280 MtrunA17_Chr2g0315551 54.245 212 91 2 12 223 11 216 1.59e-78 234
Msa0171280 MtrunA17_Chr2g0325091 55.660 212 87 2 12 223 9 213 7.59e-77 230
Msa0171280 MtrunA17_Chr8g0351861 51.869 214 101 1 12 223 14 227 1.31e-76 230
Msa0171280 MtrunA17_Chr8g0346421 59.239 184 74 1 7 190 20 202 1.83e-76 230
Msa0171280 MtrunA17_Chr7g0275991 58.696 184 76 0 12 195 18 201 8.18e-76 228
Msa0171280 MtrunA17_Chr6g0482721 52.582 213 93 3 12 223 10 215 8.52e-69 210
Msa0171280 MtrunA17_Chr8g0392931 51.887 212 97 2 12 223 12 218 2.36e-67 206
Msa0171280 MtrunA17_Chr4g0055651 45.283 212 100 2 12 223 6 201 9.98e-59 184
Msa0171280 MtrunA17_Chr7g0250531 45.283 212 100 3 12 223 6 201 4.70e-57 179
Msa0171280 MtrunA17_Chr2g0290891 43.602 211 115 1 13 223 5 211 1.72e-56 178
Msa0171280 MtrunA17_Chr2g0276931 51.807 166 80 0 12 177 7 172 2.79e-56 177
Msa0171280 MtrunA17_Chr8g0335471 44.811 212 102 3 12 223 6 202 6.37e-56 177
Msa0171280 MtrunA17_Chr1g0182321 42.453 212 111 2 12 222 13 214 1.01e-55 177
Msa0171280 MtrunA17_Chr1g0182301 42.453 212 111 2 12 222 13 214 1.12e-55 176
Msa0171280 MtrunA17_Chr1g0212521 42.326 215 107 4 12 222 13 214 7.99e-55 174
Msa0171280 MtrunA17_Chr6g0458081 44.131 213 113 2 12 223 4 211 8.42e-55 174
Msa0171280 MtrunA17_Chr7g0263071 49.697 165 82 1 12 175 13 177 1.80e-54 173
Msa0171280 MtrunA17_Chr4g0030911 42.453 212 110 3 12 222 13 213 2.48e-54 173
Msa0171280 MtrunA17_Chr8g0349711 44.444 216 113 4 10 223 2 212 3.60e-53 170
Msa0171280 MtrunA17_Chr2g0327911 47.059 170 88 2 8 175 9 178 4.45e-52 167
Msa0171280 MtrunA17_Chr8g0349681 49.412 170 86 0 7 176 377 546 6.82e-51 173
Msa0171280 MtrunA17_Chr8g0349681 44.505 182 98 1 2 183 166 344 6.99e-46 160
Msa0171280 MtrunA17_Chr8g0349681 47.531 162 85 0 10 171 9 170 2.03e-45 159
Msa0171280 MtrunA17_Chr3g0109721 40.385 208 105 2 16 223 12 200 1.32e-48 158
Msa0171280 MtrunA17_Chr5g0433561 38.942 208 108 3 16 223 12 200 4.99e-47 154
Msa0171280 MtrunA17_Chr8g0384311 43.716 183 100 3 12 192 11 192 1.87e-45 150
Msa0171280 MtrunA17_Chr1g0199331 44.099 161 89 1 16 175 33 193 1.63e-44 147
Msa0171280 MtrunA17_Chr7g0265001 40.187 214 113 5 12 223 14 214 3.50e-44 147
Msa0171280 MtrunA17_Chr1g0197331 40.183 219 105 5 12 223 13 212 1.12e-43 145
Msa0171280 MtrunA17_Chr1g0159481 41.026 195 103 4 12 195 15 208 1.96e-43 145
Msa0171280 MtrunA17_Chr1g0180291 41.014 217 104 6 12 222 12 210 3.21e-43 144
Msa0171280 MtrunA17_Chr3g0130271 44.767 172 91 4 12 180 10 180 1.19e-42 143
Msa0171280 MtrunA17_Chr5g0400131 39.490 157 95 0 15 171 10 166 1.29e-40 137
Msa0171280 MtrunA17_Chr4g0055081 38.854 157 96 0 15 171 10 166 2.11e-40 137
Msa0171280 MtrunA17_Chr8g0390561 40.625 160 95 0 16 175 11 170 2.51e-40 137
Msa0171280 MtrunA17_Chr3g0123971 36.313 179 108 1 15 193 10 182 2.79e-40 137
Msa0171280 MtrunA17_Chr8g0382221 38.217 157 97 0 15 171 10 166 1.30e-39 135
Msa0171280 MtrunA17_Chr4g0034871 36.310 168 100 3 14 174 8 175 3.57e-33 119
Msa0171280 MtrunA17_Chr8g0383261 37.725 167 97 2 14 173 12 178 1.15e-32 117
Msa0171280 MtrunA17_Chr1g0201121 37.126 167 98 2 14 173 8 174 5.05e-32 115
Msa0171280 MtrunA17_Chr6g0466301 37.126 167 98 3 14 173 8 174 5.08e-32 115
Msa0171280 MtrunA17_Chr6g0465491 37.126 167 98 3 14 173 8 174 5.08e-32 115
Msa0171280 MtrunA17_Chr2g0331691 35.329 167 101 3 14 173 10 176 2.85e-31 114
Msa0171280 MtrunA17_Chr4g0004661 35.928 167 100 3 14 173 64 230 1.22e-30 113
Msa0171280 MtrunA17_Chr6g0465471 32.990 194 114 5 29 206 5 198 2.81e-24 95.9
Msa0171280 MtrunA17_Chr6g0466161 32.474 194 115 5 29 206 5 198 1.26e-23 94.0
Msa0171280 MtrunA17_Chr3g0138121 30.114 176 117 5 1 175 1 171 1.09e-20 86.7
Msa0171280 MtrunA17_Chr3g0138111 30.114 176 117 5 1 175 1 171 1.18e-20 86.7
Msa0171280 MtrunA17_Chr3g0138101 30.114 176 117 5 1 175 1 171 1.30e-20 86.3
Msa0171280 MtrunA17_Chr6g0466431 36.364 99 54 1 14 112 8 97 2.46e-18 77.0
Msa0171280 MtrunA17_Chr6g0465611 36.364 99 54 1 14 112 8 97 2.46e-18 77.0
Msa0171280 MtrunA17_Chr2g0325101 30.460 174 107 5 14 175 6 177 2.95e-18 79.3
Msa0171280 MtrunA17_Chr4g0037021 30.460 174 107 5 14 175 6 177 4.52e-18 79.0
Msa0171280 MtrunA17_Chr6g0486041 28.421 190 122 5 14 191 6 193 2.63e-17 77.4
Msa0171280 MtrunA17_Chr8g0371501 30.114 176 105 6 14 175 6 177 6.09e-17 75.9
Msa0171280 MtrunA17_Chr5g0405791 30.114 176 105 6 14 175 6 177 1.01e-16 75.5
Msa0171280 MtrunA17_Chr4g0046211 33.065 124 80 3 14 136 6 127 1.41e-16 73.9
Msa0171280 MtrunA17_Chr3g0117931 28.652 178 113 6 10 175 4 179 5.18e-16 73.9
Msa0171280 MtrunA17_Chr1g0178291 32.370 173 107 4 10 182 427 589 3.51e-15 73.9
Msa0171280 MtrunA17_Chr5g0443631 24.862 181 129 3 4 178 93 272 7.44e-14 68.9
Msa0171280 MtrunA17_Chr2g0331841 44.444 72 39 1 83 153 2 73 6.94e-12 59.7
Msa0171280 MtrunA17_Chr1g0188111 33.058 121 75 3 15 134 18 133 9.64e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0171280 AT5G47520.1 85.268 224 28 2 1 223 1 220 1.57e-138 387
Msa0171280 AT2G43130.1 60.811 222 79 2 3 224 1 214 2.66e-95 277
Msa0171280 AT2G31680.1 62.443 221 79 1 3 223 1 217 1.16e-94 276
Msa0171280 AT1G05810.2 61.712 222 80 2 2 223 46 262 1.76e-93 275
Msa0171280 AT1G05810.1 61.538 221 80 2 3 223 1 216 3.05e-93 272
Msa0171280 AT3G07410.1 63.470 219 75 2 6 224 4 217 4.77e-93 272
Msa0171280 AT5G47960.1 58.685 213 81 2 12 222 13 220 1.05e-86 256
Msa0171280 AT5G65270.1 66.667 177 59 0 12 188 15 191 2.52e-86 255
Msa0171280 AT1G07410.1 57.547 212 82 3 12 223 10 213 1.05e-84 251
Msa0171280 AT5G59150.1 57.870 216 86 2 8 223 6 216 1.56e-84 250
Msa0171280 AT4G39990.1 57.277 213 85 3 12 223 15 222 1.67e-84 250
Msa0171280 AT3G12160.1 55.399 213 91 1 12 224 13 221 3.08e-84 249
Msa0171280 AT3G46830.1 57.075 212 86 1 12 223 10 216 9.19e-83 246
Msa0171280 AT3G46830.2 57.075 212 86 1 12 223 10 216 9.19e-83 246
Msa0171280 AT1G09630.1 53.812 223 95 3 1 223 1 215 2.96e-82 244
Msa0171280 AT4G18430.1 55.660 212 88 2 12 223 11 216 2.44e-81 242
Msa0171280 AT5G60860.1 57.075 212 85 2 12 223 11 216 4.35e-81 241
Msa0171280 AT1G16920.1 57.547 212 83 3 12 223 11 215 7.75e-81 241
Msa0171280 AT4G18800.1 55.660 212 85 2 12 223 11 213 3.54e-80 239
Msa0171280 AT1G28550.1 53.704 216 95 2 8 223 7 217 5.38e-78 234
Msa0171280 AT3G15060.1 54.930 213 88 3 12 223 11 216 3.09e-77 232
Msa0171280 AT1G06400.1 54.245 212 90 2 12 223 11 215 3.37e-77 231
Msa0171280 AT5G45750.1 53.302 212 92 2 12 223 11 215 1.22e-76 230
Msa0171280 AT2G33870.1 52.778 216 97 2 8 223 7 217 4.15e-76 229
Msa0171280 AT1G18200.1 52.511 219 98 2 12 224 11 229 1.09e-75 228
Msa0171280 AT1G73640.1 58.470 183 75 1 1 183 1 182 4.39e-73 222
Msa0171280 AT1G01200.1 58.427 178 71 2 12 186 26 203 1.33e-68 211
Msa0171280 AT5G59150.2 54.762 168 71 2 56 223 3 165 3.75e-59 184
Msa0171280 AT1G02130.1 45.283 212 101 3 12 223 6 202 1.60e-58 184
Msa0171280 AT3G11730.1 44.601 213 105 3 12 224 6 205 3.05e-57 181
Msa0171280 AT4G17170.1 43.128 211 116 1 13 223 5 211 9.87e-56 177
Msa0171280 AT4G35860.1 43.662 213 114 2 12 223 4 211 2.41e-55 176
Msa0171280 AT5G03520.1 44.601 213 106 3 12 223 13 214 4.19e-55 175
Msa0171280 AT3G09900.1 43.256 215 108 4 12 223 13 216 2.79e-54 173
Msa0171280 AT3G46060.2 49.412 170 85 1 12 180 13 182 5.49e-54 172
Msa0171280 AT3G46060.3 49.412 170 85 1 12 180 13 182 5.49e-54 172
Msa0171280 AT3G46060.1 49.412 170 85 1 12 180 13 182 5.49e-54 172
Msa0171280 AT3G53610.2 42.523 214 108 4 12 222 13 214 6.19e-54 172
Msa0171280 AT3G53610.3 42.523 214 108 4 12 222 13 214 6.19e-54 172
Msa0171280 AT3G53610.1 42.523 214 108 4 12 222 13 214 6.19e-54 172
Msa0171280 AT5G59840.1 49.697 165 82 1 12 175 13 177 8.66e-54 172
Msa0171280 AT4G17160.1 44.762 210 106 3 13 222 5 204 8.98e-54 172
Msa0171280 AT4G17530.1 43.396 212 104 2 12 223 6 201 9.86e-54 171
Msa0171280 AT5G47200.1 43.662 213 102 3 12 223 6 201 1.15e-53 171
Msa0171280 AT4G19640.1 38.942 208 108 3 16 223 12 200 6.02e-48 157
Msa0171280 AT3G54840.1 45.963 161 86 1 16 175 35 195 1.04e-45 151
Msa0171280 AT3G54840.3 45.625 160 86 1 17 175 2 161 2.05e-45 149
Msa0171280 AT3G54840.2 47.097 155 81 1 16 169 35 189 3.22e-45 149
Msa0171280 AT5G45130.1 42.945 163 93 0 16 178 12 174 5.84e-45 149
Msa0171280 AT5G45130.2 42.857 161 92 0 18 178 22 182 1.37e-43 145
Msa0171280 AT5G03530.2 41.014 217 106 7 12 223 11 210 1.40e-43 145
Msa0171280 AT5G03530.1 41.014 217 106 7 12 223 11 210 1.40e-43 145
Msa0171280 AT1G43890.3 45.783 166 87 3 12 175 11 175 1.08e-42 144
Msa0171280 AT1G43890.1 45.783 166 87 3 12 175 11 175 1.08e-42 144
Msa0171280 AT1G43890.2 45.783 166 87 3 12 175 11 175 1.08e-42 144
Msa0171280 AT4G39890.1 40.506 158 93 1 15 171 10 167 4.97e-42 142
Msa0171280 AT5G03520.2 41.477 176 91 3 49 223 40 204 1.31e-41 140
Msa0171280 AT2G44610.1 39.490 157 95 0 15 171 10 166 1.19e-40 138
Msa0171280 AT5G10260.1 34.450 209 125 3 15 223 10 206 1.33e-40 138
Msa0171280 AT4G35860.2 42.169 166 90 2 58 222 4 164 1.55e-38 131
Msa0171280 AT2G22290.1 36.943 157 99 0 15 171 10 166 1.28e-37 130
Msa0171280 AT3G09910.3 37.788 217 107 6 12 223 11 204 2.43e-37 129
Msa0171280 AT3G09910.1 37.788 217 107 6 12 223 11 204 2.43e-37 129
Msa0171280 AT3G09910.2 37.788 217 107 6 12 223 11 204 2.43e-37 129
Msa0171280 AT4G19640.2 43.846 130 73 0 16 145 12 141 5.42e-37 127
Msa0171280 AT4G19640.3 43.511 131 74 0 16 146 12 142 1.97e-36 127
Msa0171280 AT3G09910.5 39.572 187 104 4 12 193 11 193 4.42e-36 126
Msa0171280 AT3G09910.4 39.572 187 104 4 12 193 11 193 4.42e-36 126
Msa0171280 AT1G22740.1 38.323 167 96 2 14 173 8 174 1.37e-34 122
Msa0171280 AT5G64990.1 35.714 154 99 0 15 168 8 161 2.46e-33 119
Msa0171280 AT1G52280.1 37.647 170 99 4 14 176 8 177 4.02e-33 119
Msa0171280 AT3G18820.1 37.500 168 98 4 14 174 8 175 1.71e-32 117
Msa0171280 AT3G16100.1 37.725 167 97 3 14 173 8 174 6.11e-32 115
Msa0171280 AT4G09720.1 33.641 217 118 5 14 223 8 205 8.30e-31 113
Msa0171280 AT2G21880.1 36.970 165 97 4 14 171 9 173 9.15e-31 113
Msa0171280 AT5G64990.2 34.161 161 99 1 15 168 8 168 1.24e-30 112
Msa0171280 AT4G09720.4 32.883 222 118 5 14 223 8 210 7.95e-30 110
Msa0171280 AT5G39620.1 33.945 218 115 7 15 223 6 203 2.14e-29 109
Msa0171280 AT4G09720.3 32.456 228 117 5 14 223 8 216 4.95e-29 108
Msa0171280 AT1G49300.2 35.152 165 100 4 14 171 8 172 5.31e-28 105
Msa0171280 AT1G49300.1 35.152 165 100 4 14 171 8 172 5.31e-28 105
Msa0171280 AT5G46025.1 47.573 103 53 1 76 177 6 108 3.03e-25 95.9
Msa0171280 AT2G21880.4 35.135 148 89 4 31 171 1 148 1.14e-22 91.3
Msa0171280 AT2G21880.3 35.135 148 89 4 31 171 1 148 1.14e-22 91.3
Msa0171280 AT4G09720.6 33.690 187 98 5 44 223 4 171 1.42e-22 90.5
Msa0171280 AT4G09720.5 33.690 187 98 5 44 223 4 171 1.42e-22 90.5
Msa0171280 AT4G09720.2 33.690 187 98 5 44 223 4 171 1.42e-22 90.5
Msa0171280 AT5G55080.1 28.571 175 121 3 1 175 1 171 5.95e-22 90.5
Msa0171280 AT2G21880.2 32.121 165 97 5 14 171 9 165 5.38e-21 87.4
Msa0171280 AT2G44690.1 32.222 180 108 5 14 181 18 195 1.12e-20 86.7
Msa0171280 AT5G20020.1 31.053 190 117 7 1 189 1 177 1.21e-20 86.7
Msa0171280 AT5G20010.1 31.053 190 117 7 1 189 1 177 1.44e-20 86.7
Msa0171280 AT5G55190.1 30.114 176 117 5 1 175 1 171 1.87e-20 86.3
Msa0171280 AT4G35020.1 31.034 174 106 6 14 175 6 177 1.91e-17 77.8
Msa0171280 AT4G35020.2 31.034 174 106 6 14 175 6 177 1.91e-17 77.8
Msa0171280 AT4G35020.3 31.034 174 106 6 14 175 6 177 1.91e-17 77.8
Msa0171280 AT5G45970.1 30.233 172 106 5 14 173 6 175 2.65e-17 77.4
Msa0171280 AT4G28950.1 29.050 179 115 5 14 182 6 182 4.29e-17 77.0
Msa0171280 AT1G20090.1 30.460 174 107 6 14 175 5 176 5.46e-17 76.6
Msa0171280 AT5G62880.1 29.213 178 112 5 14 179 8 183 5.70e-17 77.0
Msa0171280 AT1G75840.1 29.885 174 108 6 14 175 6 177 6.85e-17 76.3
Msa0171280 AT3G48040.1 29.310 174 109 5 14 175 8 179 1.23e-16 75.9
Msa0171280 AT3G51300.1 30.233 172 106 6 16 175 8 177 1.81e-16 75.1
Msa0171280 AT4G35950.1 29.310 174 109 6 14 175 6 177 3.68e-16 74.3
Msa0171280 AT2G17800.2 29.310 174 109 6 14 175 6 177 5.12e-16 73.9
Msa0171280 AT2G17800.1 29.310 174 109 6 14 175 6 177 5.12e-16 73.9
Msa0171280 AT3G48040.2 29.299 157 97 5 14 158 8 162 3.82e-14 68.6
Msa0171280 AT5G62880.2 28.662 157 98 5 14 158 8 162 2.66e-13 66.6
Msa0171280 AT4G35020.4 32.456 114 74 3 16 128 8 119 5.85e-12 62.0
Msa0171280 AT4G35020.5 32.456 114 74 3 16 128 8 119 5.85e-12 62.0
Msa0171280 AT3G22950.1 31.405 121 77 3 15 134 18 133 4.15e-11 60.5
Msa0171280 AT3G22950.2 31.405 121 77 3 15 134 18 133 4.15e-11 60.5

Find 89 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGATTGGGTTTGGAAAAT+TGG 0.121763 1_4:+55971360 None:intergenic
GGCACAAGGTTTGTTCTTTA+TGG 0.121880 1_4:-55966814 Msa0171280:CDS
CCCAAGAGTTGCTGACTTTC+CGG 0.175365 1_4:+55968107 None:intergenic
ATGTTTGCTCAAAGGAATTT+TGG 0.219236 1_4:-55966486 Msa0171280:three_prime_UTR
CTGTTACTTCTGCATATTAT+AGG 0.243592 1_4:-55967844 Msa0171280:CDS
GCACTTCAAGCACAATTAAA+AGG 0.245552 1_4:-55966447 Msa0171280:three_prime_UTR
CCTATAGTAGACTTTGAATT+AGG 0.249689 1_4:+55967956 None:intergenic
TCTGAAAAGTTTGATTCATT+TGG 0.283794 1_4:-55968388 Msa0171280:five_prime_UTR
AAAATGCAGCTAGGTTATTC+AGG 0.292909 1_4:-55966519 Msa0171280:three_prime_UTR
TGTTACTTCTGCATATTATA+GGG 0.293105 1_4:-55967843 Msa0171280:CDS
AAAGGGTTGTTGTTCGAAAT+AGG 0.304511 1_4:-55966601 Msa0171280:exon
TTATAATAAGAACATAGTTT+TGG 0.311590 1_4:+55966560 None:intergenic
GGGTGCAGTTGGAGCACTTC+TGG 0.313947 1_4:-55967822 Msa0171280:CDS
GATGCTTCCTGGATTGAAAA+TGG 0.324916 1_4:-55966678 Msa0171280:CDS
AGGAAGTTAAAGCGCAGATA+TGG 0.333773 1_4:-55967895 Msa0171280:CDS
AGGAAAGGATTGATTGGGTT+TGG 0.344415 1_4:+55971352 None:intergenic
TAAACAACCATCATGGATTC+TGG 0.366930 1_4:+55968151 None:intergenic
TGAAGGAGGAAAGGATTGAT+TGG 0.368919 1_4:+55971346 None:intergenic
CTTAGGTGATATTCTAGTAT+TGG 0.369185 1_4:-55968180 Msa0171280:intron
TAAAGAGTTGAAGTGTAAGT+TGG 0.375881 1_4:-55970106 Msa0171280:five_prime_UTR
TGGGAACAAGTCAGATCTTA+AGG 0.381456 1_4:-55966880 Msa0171280:CDS
TCAAGAAAGATGATGCTTCC+TGG 0.401349 1_4:-55966689 Msa0171280:CDS
GAAGGAGGAAAGGATTGATT+GGG 0.408033 1_4:+55971347 None:intergenic
GATTCATTTGGACAGAGGTC+TGG 0.415908 1_4:-55968376 Msa0171280:five_prime_UTR
CTTGAGACATCATAACCTTC+CGG 0.418307 1_4:+55966715 None:intergenic
CCTAATTCAAAGTCTACTAT+AGG 0.418688 1_4:-55967956 Msa0171280:CDS
CACCCAACTGTTGCTTCATA+AGG 0.421536 1_4:-55968321 Msa0171280:intron
ACCGGAAAGTCAGCAACTCT+TGG 0.429868 1_4:-55968108 Msa0171280:five_prime_UTR
AACGTTGTCACAATACTTGT+TGG 0.431302 1_4:-55966900 Msa0171280:CDS
AAAGTTAACAGACTGGATAA+TGG 0.436471 1_4:-55966374 Msa0171280:three_prime_UTR
ACAAGGAGAGAAGTTGTTTG+AGG 0.470536 1_4:-55970061 Msa0171280:intron
CGCAGATATGGGACACAGCT+GGG 0.471236 1_4:-55967883 Msa0171280:CDS
GCGCAGATATGGGACACAGC+TGG 0.472726 1_4:-55967884 Msa0171280:CDS
GGAAGTTAAAGCGCAGATAT+GGG 0.487077 1_4:-55967894 Msa0171280:CDS
ACGTTGTCACAATACTTGTT+GGG 0.487177 1_4:-55966899 Msa0171280:CDS
TGATCTTAATGTTTGCTCAA+AGG 0.487616 1_4:-55966494 Msa0171280:three_prime_UTR
ATTTACTCGCAAGATTTGCC+AGG 0.491537 1_4:-55967991 Msa0171280:CDS
TAATTGGTGATTCAGCTGTT+GGG 0.495291 1_4:-55968021 Msa0171280:CDS
GCATATTATAGGGGTGCAGT+TGG 0.498462 1_4:-55967833 Msa0171280:CDS
TTCTGGTATATGACATCAGC+AGG 0.502132 1_4:-55967805 Msa0171280:CDS
CCGGAAAGTCAGCAACTCTT+GGG 0.509080 1_4:-55968107 Msa0171280:five_prime_UTR
TTAATTGGTGATTCAGCTGT+TGG 0.515554 1_4:-55968022 Msa0171280:CDS
CGTCAAACGTTTGATAGCAT+TGG 0.518334 1_4:-55967782 Msa0171280:CDS
GTTGATTTGTTTCTACCCAC+CGG 0.522730 1_4:-55968126 Msa0171280:five_prime_UTR
AAGTGTAAGTTGGAGTTCAA+AGG 0.529244 1_4:-55970096 Msa0171280:five_prime_UTR
TACCTTATGAAGCAACAGTT+GGG 0.534143 1_4:+55968319 None:intergenic
CAACTCTTGGGACTCGCAGA+TGG 0.539042 1_4:-55968095 Msa0171280:exon
ATACCTTATGAAGCAACAGT+TGG 0.549284 1_4:+55968318 None:intergenic
TGATGCTGATATGCGATTGA+AGG 0.550236 1_4:+55971329 None:intergenic
GAAGGGGATCGATCAGCAGA+AGG 0.552374 1_4:-55966633 Msa0171280:CDS
TCAACAATAAACAACCATCA+TGG 0.552951 1_4:+55968144 None:intergenic
GTTACTTCTGCATATTATAG+GGG 0.554984 1_4:-55967842 Msa0171280:CDS
ACTGTTGTTCTACAACAAGA+AGG 0.557959 1_4:-55966651 Msa0171280:CDS
AGCATCATCATTTCATATCA+CGG 0.559041 1_4:-55971313 Msa0171280:intron
ATTAGGATAAAATTCATCCC+TGG 0.561389 1_4:+55967973 None:intergenic
CGTTTGATAGCATTGGTCGA+TGG 0.567811 1_4:-55967775 Msa0171280:CDS
CTGTTGTTCTACAACAAGAA+GGG 0.571816 1_4:-55966650 Msa0171280:CDS
AAGAGTTGCTGACTTTCCGG+TGG 0.571928 1_4:+55968110 None:intergenic
GGGACACAGCTGGGCAAGAG+AGG 0.572066 1_4:-55967874 Msa0171280:CDS
AGATCTTAAGGATGCGAGAG+AGG 0.573972 1_4:-55966868 Msa0171280:CDS
AAATCTACAACATATTAAGC+CGG 0.576659 1_4:-55966734 Msa0171280:CDS
AGGGGATCGATCAGCAGAAG+GGG 0.577182 1_4:-55966631 Msa0171280:CDS
AAGGGGATCGATCAGCAGAA+GGG 0.592624 1_4:-55966632 Msa0171280:CDS
CAAATCAAATGAGAGAGCGA+AGG 0.596092 1_4:+55971392 None:intergenic
GGTACCTACGACGGAAGGCA+AGG 0.605827 1_4:-55966847 Msa0171280:CDS
AGAGAGGTACCTACGACGGA+AGG 0.610104 1_4:-55966852 Msa0171280:CDS
TAATGAAGAAGAGAAGACAG+AGG 0.611987 1_4:-55968065 Msa0171280:CDS
AAATAAATCACATACTAGAA+CGG 0.614465 1_4:-55971424 Msa0171280:five_prime_UTR
GACAGAGGTCTGGATGCTGA+TGG 0.614809 1_4:-55968366 Msa0171280:five_prime_UTR
AGAGTTGCTGACTTTCCGGT+GGG 0.615240 1_4:+55968111 None:intergenic
AAAGGACTGAGGGGAAAACA+AGG 0.618996 1_4:-55970078 Msa0171280:five_prime_UTR
AAATCAAATGAGAGAGCGAA+GGG 0.619335 1_4:+55971393 None:intergenic
TGTTGTTCTACAACAAGAAG+GGG 0.621100 1_4:-55966649 Msa0171280:CDS
AACGCCTTGCCTTCCGTCGT+AGG 0.621241 1_4:+55966843 None:intergenic
CTACAACATATTAAGCCGGA+AGG 0.622382 1_4:-55966730 Msa0171280:CDS
TTTACTCGCAAGATTTGCCA+GGG 0.623585 1_4:-55967990 Msa0171280:CDS
ATATGCGATTGAAGGAGGAA+AGG 0.624735 1_4:+55971337 None:intergenic
AGTTTGATTCATTTGGACAG+AGG 0.626927 1_4:-55968381 Msa0171280:five_prime_UTR
GTTGGAGTTCAAAGGACTGA+GGG 0.629671 1_4:-55970088 Msa0171280:five_prime_UTR
CCAAACCTGAAAATGCAGCT+AGG 0.633564 1_4:-55966528 Msa0171280:three_prime_UTR
AAGGCGTTAGCTGAGGCACA+AGG 0.638041 1_4:-55966828 Msa0171280:CDS
AGAGGTCTGGATGCTGATGG+TGG 0.638056 1_4:-55968363 Msa0171280:five_prime_UTR
TAAATCACATACTAGAACGG+TGG 0.638714 1_4:-55971421 Msa0171280:five_prime_UTR
GGAAGGCAAGGCGTTAGCTG+AGG 0.641771 1_4:-55966835 Msa0171280:CDS
GAGAAAGCCAGAATCCATGA+TGG 0.653639 1_4:-55968158 Msa0171280:five_prime_UTR
TGCTGATATGCGATTGAAGG+AGG 0.673397 1_4:+55971332 None:intergenic
AGTTGGAGTTCAAAGGACTG+AGG 0.676669 1_4:-55970089 Msa0171280:five_prime_UTR
TTGGAGTTCAAAGGACTGAG+GGG 0.715065 1_4:-55970087 Msa0171280:five_prime_UTR
TGCGAGAGAGGTACCTACGA+CGG 0.743487 1_4:-55966856 Msa0171280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAAAATCATATAAAAAAT+AGG + chr1_4:55967267-55967286 None:intergenic 10.0%
!!! TTTTTTATATGATTTTTAGT+AGG - chr1_4:55967268-55967287 Msa0171280:intron 10.0%
!!! AATTTTGTTTATTTACATAA+AGG + chr1_4:55970317-55970336 None:intergenic 10.0%
!! AATGATATAATAATGAAAGA+TGG + chr1_4:55966699-55966718 None:intergenic 15.0%
!! ATTAATGTCATGTAAAAATA+CGG - chr1_4:55967055-55967074 Msa0171280:intron 15.0%
!! ATTATTAATTTACCTATATC+TGG - chr1_4:55967092-55967111 Msa0171280:intron 15.0%
!! TTATTAATTTACCTATATCT+GGG - chr1_4:55967093-55967112 Msa0171280:intron 15.0%
!! AAGAATTATGTAAAATTGAA+TGG - chr1_4:55969307-55969326 Msa0171280:intron 15.0%
!!! TAATCTTGAGATTTATTTTT+TGG - chr1_4:55969562-55969581 Msa0171280:intron 15.0%
!! TTTATGATACTGAAAATTAA+TGG - chr1_4:55970247-55970266 Msa0171280:intron 15.0%
!! TTCAAAAAAAAAAACGTATA+TGG + chr1_4:55970586-55970605 None:intergenic 15.0%
!!! ATATACGTTTTTTTTTTTGA+AGG - chr1_4:55970585-55970604 Msa0171280:intron 15.0%
!!! TATACGTTTTTTTTTTTGAA+GGG - chr1_4:55970586-55970605 Msa0171280:intron 15.0%
!!! TTATAATAAGAACATAGTTT+TGG + chr1_4:55971295-55971314 None:intergenic 15.0%
!! AAATAAATCACATACTAGAA+CGG - chr1_4:55966428-55966447 Msa0171280:three_prime_UTR 20.0%
!! TAGAACAATGAATGAAATTT+GGG + chr1_4:55966628-55966647 None:intergenic 20.0%
!! ATAGAACAATGAATGAAATT+TGG + chr1_4:55966629-55966648 None:intergenic 20.0%
!!! ATACATTTTGACATAATAAC+AGG - chr1_4:55967712-55967731 Msa0171280:intron 20.0%
!!! TACATTTTGACATAATAACA+GGG - chr1_4:55967713-55967732 Msa0171280:intron 20.0%
!! AATAACTATCAACCTTAATT+TGG - chr1_4:55968139-55968158 Msa0171280:five_prime_UTR 20.0%
!!! ATGACGAAACAAATATTTTT+GGG - chr1_4:55968345-55968364 Msa0171280:five_prime_UTR 20.0%
!!! AATAAGTTGATAACATTTTC+AGG + chr1_4:55968429-55968448 None:intergenic 20.0%
!!! TGGCAGTTTTTTTTTTTTTT+TGG + chr1_4:55968823-55968842 None:intergenic 20.0%
!! CACATTAATATAATAATTGC+AGG - chr1_4:55968877-55968896 Msa0171280:intron 20.0%
!! TGGTGATAGTTATAAATTTA+TGG - chr1_4:55969218-55969237 Msa0171280:intron 20.0%
!! AATTTATGGAAATGAATTTC+AGG - chr1_4:55969232-55969251 Msa0171280:intron 20.0%
!! ATTTATGGAAATGAATTTCA+GGG - chr1_4:55969233-55969252 Msa0171280:intron 20.0%
!!! CAATTAAGACAATTTTGAAA+AGG + chr1_4:55969817-55969836 None:intergenic 20.0%
!!! CTTTTCAAAATTGTCTTAAT+TGG - chr1_4:55969815-55969834 Msa0171280:intron 20.0%
!!! TAATTTCCATTTTTTGAGTT+TGG + chr1_4:55969931-55969950 None:intergenic 20.0%
!! ACTCAAAAAATGGAAATTAA+CGG - chr1_4:55969932-55969951 Msa0171280:intron 20.0%
!! AAAGAACAAGAAAAATTTCA+AGG + chr1_4:55970153-55970172 None:intergenic 20.0%
!!! AACTTTAGAGATTAAATTGA+GGG + chr1_4:55970413-55970432 None:intergenic 20.0%
!!! AAACTTTAGAGATTAAATTG+AGG + chr1_4:55970414-55970433 None:intergenic 20.0%
!!! AAAAACTTTAGAAACTAAGT+TGG + chr1_4:55970449-55970468 None:intergenic 20.0%
!! AGTCTAAGTATATGAAAATA+TGG + chr1_4:55970550-55970569 None:intergenic 20.0%
!! ATATACTTAGACTAAAATGA+GGG - chr1_4:55970557-55970576 Msa0171280:intron 20.0%
!!! ATACGTTTTTTTTTTTGAAG+GGG - chr1_4:55970587-55970606 Msa0171280:intron 20.0%
!! AGACTATTTGTATATACTTT+AGG - chr1_4:55970627-55970646 Msa0171280:intron 20.0%
!! GACTATTTGTATATACTTTA+GGG - chr1_4:55970628-55970647 Msa0171280:intron 20.0%
! AGAACAATGAATGAAATTTG+GGG + chr1_4:55966627-55966646 None:intergenic 25.0%
!! CAATAATTTGAGATAGAGAA+GGG - chr1_4:55967021-55967040 Msa0171280:intron 25.0%
!! TTGATTAAGTTTTTCTTGAC+AGG + chr1_4:55967221-55967240 None:intergenic 25.0%
! CTTAATCAAACCATTAAAAG+AGG - chr1_4:55967232-55967251 Msa0171280:intron 25.0%
! GTGAAGCTAAATTTATTTAG+AGG - chr1_4:55967386-55967405 Msa0171280:intron 25.0%
! TATCAAGAATCATGATTCAA+AGG + chr1_4:55967599-55967618 None:intergenic 25.0%
! CTTTAAGCATTAAATAAGAC+AGG + chr1_4:55967654-55967673 None:intergenic 25.0%
!!! TAAAAGGTGCTAAATCATTT+GGG + chr1_4:55967885-55967904 None:intergenic 25.0%
!! TAAGTTCACTCTAAAAAAAC+TGG - chr1_4:55967979-55967998 Msa0171280:CDS 25.0%
! GCATAACAAAAATCAAAGTA+TGG + chr1_4:55968205-55968224 None:intergenic 25.0%
!!! ACTTTGATTTTTGTTATGCT+AGG - chr1_4:55968206-55968225 Msa0171280:intron 25.0%
!! GATGACGAAACAAATATTTT+TGG - chr1_4:55968344-55968363 Msa0171280:five_prime_UTR 25.0%
!!! TGACGAAACAAATATTTTTG+GGG - chr1_4:55968346-55968365 Msa0171280:five_prime_UTR 25.0%
! CAAATTATTTGGGAATCTAT+TGG + chr1_4:55968651-55968670 None:intergenic 25.0%
! CTAAAGTTACTAGAGAAATA+GGG + chr1_4:55968778-55968797 None:intergenic 25.0%
! ACTAAAGTTACTAGAGAAAT+AGG + chr1_4:55968779-55968798 None:intergenic 25.0%
!! ATATCTAAAACATCATGTTC+TGG + chr1_4:55968958-55968977 None:intergenic 25.0%
!!! AAAAAGGCTCTAAATTTTTC+TGG - chr1_4:55969038-55969057 Msa0171280:intron 25.0%
! AGTTTACCATAGTTTATGAT+GGG + chr1_4:55969073-55969092 None:intergenic 25.0%
! AAGTTTACCATAGTTTATGA+TGG + chr1_4:55969074-55969093 None:intergenic 25.0%
! TAGTAAAATTATACCCAGAA+GGG + chr1_4:55969410-55969429 None:intergenic 25.0%
!! TTCTGGGTATAATTTTACTA+CGG - chr1_4:55969410-55969429 Msa0171280:intron 25.0%
! TCTGAAAAGTTTGATTCATT+TGG - chr1_4:55969464-55969483 Msa0171280:intron 25.0%
! AAAAATGGAAATTAACGGAA+AGG - chr1_4:55969937-55969956 Msa0171280:intron 25.0%
!! TGTTACTTCTGCATATTATA+GGG - chr1_4:55970009-55970028 Msa0171280:intron 25.0%
! TTGTTCTTTCTATGTTATTG+AGG - chr1_4:55970164-55970183 Msa0171280:intron 25.0%
! TTTCTCAATAAACTTGACAT+TGG - chr1_4:55970208-55970227 Msa0171280:intron 25.0%
!!! TAAGCAATCTTTGAAGTATA+TGG - chr1_4:55970477-55970496 Msa0171280:intron 25.0%
!!! TATATGCTTTTAAGATGCTA+GGG - chr1_4:55970515-55970534 Msa0171280:intron 25.0%
! CATATACTTAGACTAAAATG+AGG - chr1_4:55970556-55970575 Msa0171280:intron 25.0%
! ACAATAAAACTTTACACTGT+TGG + chr1_4:55970728-55970747 None:intergenic 25.0%
! TGAATCAAAGCAAAAACAAA+AGG + chr1_4:55970840-55970859 None:intergenic 25.0%
! AAACATGTACTCACATATAT+TGG - chr1_4:55970861-55970880 Msa0171280:intron 25.0%
! AAATCTACAACATATTAAGC+CGG - chr1_4:55971118-55971137 Msa0171280:intron 25.0%
ATTGATTGGGTTTGGAAAAT+TGG + chr1_4:55966495-55966514 None:intergenic 30.0%
AGCATCATCATTTCATATCA+CGG - chr1_4:55966539-55966558 Msa0171280:three_prime_UTR 30.0%
GAACAATGAATGAAATTTGG+GGG + chr1_4:55966626-55966645 None:intergenic 30.0%
ATAGACTTCAAATCCCATAT+GGG - chr1_4:55966922-55966941 Msa0171280:intron 30.0%
AATTCTACATTGTCCCATAT+GGG + chr1_4:55966938-55966957 None:intergenic 30.0%
TAATTCTACATTGTCCCATA+TGG + chr1_4:55966939-55966958 None:intergenic 30.0%
CCTTCTCTATCTCAAATTAT+TGG + chr1_4:55967023-55967042 None:intergenic 30.0%
! CCAATAATTTGAGATAGAGA+AGG - chr1_4:55967020-55967039 Msa0171280:intron 30.0%
AAAAAAAACAGCCCAGATAT+AGG + chr1_4:55967107-55967126 None:intergenic 30.0%
!!! TTTTTTTTTTCCCCTATCTC+AGG - chr1_4:55967127-55967146 Msa0171280:intron 30.0%
TCAAACCATTAAAAGAGGTT+TGG - chr1_4:55967237-55967256 Msa0171280:intron 30.0%
CAAAAGTCTTTCTCTCATTA+AGG + chr1_4:55967331-55967350 None:intergenic 30.0%
!!! AGACTTTTGTTTGTTGTTGA+AGG - chr1_4:55967342-55967361 Msa0171280:intron 30.0%
! TTTAGCTTCACAGACTAAAA+AGG + chr1_4:55967377-55967396 None:intergenic 30.0%
CTTTAGTAGTGTTAGTTACT+TGG - chr1_4:55967548-55967567 Msa0171280:intron 30.0%
TTCAAAGGAGATGATTTCTA+TGG + chr1_4:55967584-55967603 None:intergenic 30.0%
TTGCCTTTGGTTATATATAC+AGG - chr1_4:55967624-55967643 Msa0171280:intron 30.0%
AGACCTGTATATATAACCAA+AGG + chr1_4:55967630-55967649 None:intergenic 30.0%
CTTGCGAAGAAATCAAAAAA+AGG + chr1_4:55967683-55967702 None:intergenic 30.0%
TAAAGAGTTGAAGTGTAAGT+TGG - chr1_4:55967746-55967765 Msa0171280:intron 30.0%
!! CTAAAAGGTGCTAAATCATT+TGG + chr1_4:55967886-55967905 None:intergenic 30.0%
! TTTGCCAACAAATGTTTTTC+AGG - chr1_4:55967949-55967968 Msa0171280:CDS 30.0%
! TTGCCAACAAATGTTTTTCA+GGG - chr1_4:55967950-55967969 Msa0171280:CDS 30.0%
! TTCACTCTAAAAAAACTGGT+GGG - chr1_4:55967983-55968002 Msa0171280:CDS 30.0%
GCAAACAGATTTCCAAATTA+AGG + chr1_4:55968154-55968173 None:intergenic 30.0%
! TTTTCGAACTATTTTATGCG+AGG - chr1_4:55968264-55968283 Msa0171280:intron 30.0%
CTTCGTTAAAACACGATAAA+AGG + chr1_4:55968313-55968332 None:intergenic 30.0%
!!! CTTTTATCGTGTTTTAACGA+AGG - chr1_4:55968311-55968330 Msa0171280:intron 30.0%
!!! GTTGATAACATTTTCAGGAA+TGG + chr1_4:55968424-55968443 None:intergenic 30.0%
! TGTGAAGAAAAGAAGCATAA+AGG + chr1_4:55968464-55968483 None:intergenic 30.0%
CCAAGACTCTCAAATTATTT+GGG + chr1_4:55968661-55968680 None:intergenic 30.0%
CCAAATAATTTGAGAGTCTT+GGG - chr1_4:55968659-55968678 Msa0171280:intron 30.0%
!!! TTTTATTGGGGACTAGTTAT+TGG + chr1_4:55968729-55968748 None:intergenic 30.0%
! ATGTCAGTAGGCATTTTATT+GGG + chr1_4:55968742-55968761 None:intergenic 30.0%
! AATGTCAGTAGGCATTTTAT+TGG + chr1_4:55968743-55968762 None:intergenic 30.0%
ATGTGCAACAGTTATCTATT+AGG + chr1_4:55968862-55968881 None:intergenic 30.0%
AGTAACTGCCTAATAATAGT+AGG - chr1_4:55968910-55968929 Msa0171280:intron 30.0%
! ATCATGTGTGAGTAACATTT+TGG - chr1_4:55969102-55969121 Msa0171280:intron 30.0%
TTGCAAGATCTGTACTTTAT+TGG - chr1_4:55969198-55969217 Msa0171280:intron 30.0%
!! GGTATAAGTTTTATCTGCAA+AGG + chr1_4:55969380-55969399 None:intergenic 30.0%
GTAGTAAAATTATACCCAGA+AGG + chr1_4:55969411-55969430 None:intergenic 30.0%
TACTAAAAACTGATGCTTTC+AGG - chr1_4:55969438-55969457 Msa0171280:intron 30.0%
CAAAAACTACAAAAGAAAGC+TGG + chr1_4:55969624-55969643 None:intergenic 30.0%
CTTAGGTGATATTCTAGTAT+TGG - chr1_4:55969672-55969691 Msa0171280:intron 30.0%
TCAACAATAAACAACCATCA+TGG + chr1_4:55969711-55969730 None:intergenic 30.0%
ATTAGGATAAAATTCATCCC+TGG + chr1_4:55969882-55969901 None:intergenic 30.0%
CCTATAGTAGACTTTGAATT+AGG + chr1_4:55969899-55969918 None:intergenic 30.0%
CCTAATTCAAAGTCTACTAT+AGG - chr1_4:55969896-55969915 Msa0171280:intron 30.0%
AGAGTTCCAAACTCAAAAAA+TGG - chr1_4:55969922-55969941 Msa0171280:intron 30.0%
! CTGTTACTTCTGCATATTAT+AGG - chr1_4:55970008-55970027 Msa0171280:intron 30.0%
GTTACTTCTGCATATTATAG+GGG - chr1_4:55970010-55970029 Msa0171280:intron 30.0%
TGTTATTGAGGTAAATGATC+AGG - chr1_4:55970176-55970195 Msa0171280:intron 30.0%
! TGAAAATTAATGGCCCTTTT+TGG - chr1_4:55970257-55970276 Msa0171280:intron 30.0%
! GAAAATTAATGGCCCTTTTT+GGG - chr1_4:55970258-55970277 Msa0171280:intron 30.0%
! AAAATTAATGGCCCTTTTTG+GGG - chr1_4:55970259-55970278 Msa0171280:intron 30.0%
CATTAAACTTTCCCCAAAAA+GGG + chr1_4:55970273-55970292 None:intergenic 30.0%
!! ATGGCCTTATAGTACTTATA+TGG - chr1_4:55970290-55970309 Msa0171280:intron 30.0%
AGGACCATATAAGTACTATA+AGG + chr1_4:55970297-55970316 None:intergenic 30.0%
TACAAAATAAAATCGCCTCA+AGG + chr1_4:55970358-55970377 None:intergenic 30.0%
!!! GTATATGCTTTTAAGATGCT+AGG - chr1_4:55970514-55970533 Msa0171280:intron 30.0%
TACATGTACACACATATTGA+TGG - chr1_4:55970805-55970824 Msa0171280:intron 30.0%
TGATCTTAATGTTTGCTCAA+AGG - chr1_4:55971358-55971377 Msa0171280:five_prime_UTR 30.0%
! ATGTTTGCTCAAAGGAATTT+TGG - chr1_4:55971366-55971385 Msa0171280:five_prime_UTR 30.0%
!!! GAATTTTGGAGTAGAAATTG+TGG - chr1_4:55971380-55971399 Msa0171280:five_prime_UTR 30.0%
AAAGTTAACAGACTGGATAA+TGG - chr1_4:55971478-55971497 Msa0171280:intron 30.0%
TAAATCACATACTAGAACGG+TGG - chr1_4:55966431-55966450 Msa0171280:three_prime_UTR 35.0%
AAATCAAATGAGAGAGCGAA+GGG + chr1_4:55966462-55966481 None:intergenic 35.0%
GAGTAAACTGAAATTTGAGC+AGG + chr1_4:55966655-55966674 None:intergenic 35.0%
TATGTACTAGCAACAAGTCA+GGG + chr1_4:55966738-55966757 None:intergenic 35.0%
GATAGACTTCAAATCCCATA+TGG - chr1_4:55966921-55966940 Msa0171280:intron 35.0%
! AGCATATAGAACCATTGGTT+AGG - chr1_4:55966990-55967009 Msa0171280:intron 35.0%
ACCATTAAAAGAGGTTTGGA+TGG - chr1_4:55967241-55967260 Msa0171280:intron 35.0%
TCCCAGATATAAAGCCATTT+GGG - chr1_4:55967467-55967486 Msa0171280:intron 35.0%
!! ACCCAAATGGCTTTATATCT+GGG + chr1_4:55967471-55967490 None:intergenic 35.0%
TCTTGATATTGTCTTGCCTT+TGG - chr1_4:55967611-55967630 Msa0171280:intron 35.0%
! AAGTGTAAGTTGGAGTTCAA+AGG - chr1_4:55967756-55967775 Msa0171280:intron 35.0%
TAGATATAAACTTCTGCAGG+AGG + chr1_4:55967838-55967857 None:intergenic 35.0%
GTCTAGATATAAACTTCTGC+AGG + chr1_4:55967841-55967860 None:intergenic 35.0%
TCTTGAGTCGAATCTCTAAA+AGG + chr1_4:55967901-55967920 None:intergenic 35.0%
!! TGCCAACAAATGTTTTTCAG+GGG - chr1_4:55967951-55967970 Msa0171280:CDS 35.0%
! GTTCACTCTAAAAAAACTGG+TGG - chr1_4:55967982-55968001 Msa0171280:CDS 35.0%
TGATCTCATCTAACCATAAC+TGG - chr1_4:55968087-55968106 Msa0171280:exon 35.0%
GATCTCATCTAACCATAACT+GGG - chr1_4:55968088-55968107 Msa0171280:exon 35.0%
TAACACCTCAACGTATTACA+GGG + chr1_4:55968539-55968558 None:intergenic 35.0%
ATAACACCTCAACGTATTAC+AGG + chr1_4:55968540-55968559 None:intergenic 35.0%
!!! TCATTTTTTTCCCTGGCATA+CGG + chr1_4:55968563-55968582 None:intergenic 35.0%
!!! AGTGCTATCATTTTTTTCCC+TGG + chr1_4:55968570-55968589 None:intergenic 35.0%
AGTAGCCATATGATAGAAAC+TGG - chr1_4:55968593-55968612 Msa0171280:intron 35.0%
TGGTACCAGTTTCTATCATA+TGG + chr1_4:55968601-55968620 None:intergenic 35.0%
CCCAAATAATTTGAGAGTCT+TGG - chr1_4:55968658-55968677 Msa0171280:intron 35.0%
CCCAAGACTCTCAAATTATT+TGG + chr1_4:55968662-55968681 None:intergenic 35.0%
! TGTCAGTAGGCATTTTATTG+GGG + chr1_4:55968741-55968760 None:intergenic 35.0%
TAGAGAAATAGGGAATCTGA+AGG + chr1_4:55968768-55968787 None:intergenic 35.0%
!! TTTTTGGTACGTACGTATCT+TGG + chr1_4:55968807-55968826 None:intergenic 35.0%
GTGTTAGGCCTACTATTATT+AGG + chr1_4:55968921-55968940 None:intergenic 35.0%
! TCTAAAACATCATGTTCTGG+AGG + chr1_4:55968955-55968974 None:intergenic 35.0%
TTCCCCTCACAGAATTAAAA+AGG - chr1_4:55969022-55969041 Msa0171280:intron 35.0%
!! AGCCTTTTTAATTCTGTGAG+GGG + chr1_4:55969027-55969046 None:intergenic 35.0%
!! GAGCCTTTTTAATTCTGTGA+GGG + chr1_4:55969028-55969047 None:intergenic 35.0%
!! AGAGCCTTTTTAATTCTGTG+AGG + chr1_4:55969029-55969048 None:intergenic 35.0%
CATTCACCCATCATAAACTA+TGG - chr1_4:55969064-55969083 Msa0171280:intron 35.0%
!! TGAGTAACATTTTGGCACTA+AGG - chr1_4:55969110-55969129 Msa0171280:intron 35.0%
!! GAGTAACATTTTGGCACTAA+GGG - chr1_4:55969111-55969130 Msa0171280:intron 35.0%
!! AGTAACATTTTGGCACTAAG+GGG - chr1_4:55969112-55969131 Msa0171280:intron 35.0%
AAAATTATACCCAGAAGGGA+AGG + chr1_4:55969406-55969425 None:intergenic 35.0%
AGTTTGATTCATTTGGACAG+AGG - chr1_4:55969471-55969490 Msa0171280:intron 35.0%
TACCTTATGAAGCAACAGTT+GGG + chr1_4:55969536-55969555 None:intergenic 35.0%
ATACCTTATGAAGCAACAGT+TGG + chr1_4:55969537-55969556 None:intergenic 35.0%
AAACTACAAAAGAAAGCTGG+AGG + chr1_4:55969621-55969640 None:intergenic 35.0%
TATCACCTAAGATGAGAACA+AGG + chr1_4:55969663-55969682 None:intergenic 35.0%
TAAACAACCATCATGGATTC+TGG + chr1_4:55969704-55969723 None:intergenic 35.0%
TAATGAAGAAGAGAAGACAG+AGG - chr1_4:55969787-55969806 Msa0171280:intron 35.0%
! TTAATTGGTGATTCAGCTGT+TGG - chr1_4:55969830-55969849 Msa0171280:intron 35.0%
! TAATTGGTGATTCAGCTGTT+GGG - chr1_4:55969831-55969850 Msa0171280:intron 35.0%
CCATTAAACTTTCCCCAAAA+AGG + chr1_4:55970274-55970293 None:intergenic 35.0%
!! CCTTTTTGGGGAAAGTTTAA+TGG - chr1_4:55970271-55970290 Msa0171280:intron 35.0%
TGAAGAGAGTGATACTTCAA+AGG - chr1_4:55970658-55970677 Msa0171280:intron 35.0%
AGTGATACTTCAAAGGCTAA+TGG - chr1_4:55970665-55970684 Msa0171280:intron 35.0%
! GGCTTACTCTCTTTCATTTT+AGG - chr1_4:55970686-55970705 Msa0171280:intron 35.0%
ATGTCGAAGAATAACAAGAC+TGG + chr1_4:55970786-55970805 None:intergenic 35.0%
CATGTACTCACATATATTGG+TGG - chr1_4:55970864-55970883 Msa0171280:intron 35.0%
GAAATGATGATTAAGTGCAC+TGG - chr1_4:55970900-55970919 Msa0171280:intron 35.0%
AACGTTGTCACAATACTTGT+TGG - chr1_4:55970952-55970971 Msa0171280:intron 35.0%
ACGTTGTCACAATACTTGTT+GGG - chr1_4:55970953-55970972 Msa0171280:intron 35.0%
! AGTCTTTCCATTTTCAATCC+AGG + chr1_4:55971184-55971203 None:intergenic 35.0%
ACTGTTGTTCTACAACAAGA+AGG - chr1_4:55971201-55971220 Msa0171280:intron 35.0%
CTGTTGTTCTACAACAAGAA+GGG - chr1_4:55971202-55971221 Msa0171280:intron 35.0%
TGTTGTTCTACAACAAGAAG+GGG - chr1_4:55971203-55971222 Msa0171280:intron 35.0%
! AAAGGGTTGTTGTTCGAAAT+AGG - chr1_4:55971251-55971270 Msa0171280:intron 35.0%
! AATAACCTAGCTGCATTTTC+AGG + chr1_4:55971332-55971351 None:intergenic 35.0%
AAAATGCAGCTAGGTTATTC+AGG - chr1_4:55971333-55971352 Msa0171280:five_prime_UTR 35.0%
GCACTTCAAGCACAATTAAA+AGG - chr1_4:55971405-55971424 Msa0171280:five_prime_UTR 35.0%
! GCGTAACAAATTTTTCTCCG+AGG - chr1_4:55966380-55966399 Msa0171280:three_prime_UTR 40.0%
CAAATCAAATGAGAGAGCGA+AGG + chr1_4:55966463-55966482 None:intergenic 40.0%
AGGAAAGGATTGATTGGGTT+TGG + chr1_4:55966503-55966522 None:intergenic 40.0%
GAAGGAGGAAAGGATTGATT+GGG + chr1_4:55966508-55966527 None:intergenic 40.0%
TGAAGGAGGAAAGGATTGAT+TGG + chr1_4:55966509-55966528 None:intergenic 40.0%
ATATGCGATTGAAGGAGGAA+AGG + chr1_4:55966518-55966537 None:intergenic 40.0%
TGATGCTGATATGCGATTGA+AGG + chr1_4:55966526-55966545 None:intergenic 40.0%
GTATGTACTAGCAACAAGTC+AGG + chr1_4:55966739-55966758 None:intergenic 40.0%
GCTTGAGCATATAGAACCAT+TGG - chr1_4:55966985-55967004 Msa0171280:intron 40.0%
TTGGATACACTCCTAACCAA+TGG + chr1_4:55967004-55967023 None:intergenic 40.0%
AGTGTGGTTAACCTGAGATA+GGG + chr1_4:55967141-55967160 None:intergenic 40.0%
! GCCATCCAAACCTCTTTTAA+TGG + chr1_4:55967245-55967264 None:intergenic 40.0%
GTCTTTCTCTCATTAAGGTC+AGG + chr1_4:55967326-55967345 None:intergenic 40.0%
TTCAGACATGAGATCCCTTT+GGG + chr1_4:55967443-55967462 None:intergenic 40.0%
GTCCCAGATATAAAGCCATT+TGG - chr1_4:55967466-55967485 Msa0171280:intron 40.0%
!! CACCCAAATGGCTTTATATC+TGG + chr1_4:55967472-55967491 None:intergenic 40.0%
TCACCCTGCATCATAAACTT+TGG - chr1_4:55967495-55967514 Msa0171280:intron 40.0%
GCACCAAAGTTTATGATGCA+GGG + chr1_4:55967501-55967520 None:intergenic 40.0%
AGCACCAAAGTTTATGATGC+AGG + chr1_4:55967502-55967521 None:intergenic 40.0%
ACAAGGAGAGAAGTTGTTTG+AGG - chr1_4:55967791-55967810 Msa0171280:CDS 40.0%
GTCCCCTGAAAAACATTTGT+TGG + chr1_4:55967956-55967975 None:intergenic 40.0%
GGAAGTTCAATAACCTTCGT+TGG - chr1_4:55968367-55968386 Msa0171280:five_prime_UTR 40.0%
TCTTCACATATGCAACCTCA+AGG - chr1_4:55968476-55968495 Msa0171280:intron 40.0%
! TAGTTATTGGTTGGGAGAAC+CGG + chr1_4:55968716-55968735 None:intergenic 40.0%
!! TTGGGGACTAGTTATTGGTT+GGG + chr1_4:55968724-55968743 None:intergenic 40.0%
!! ATTGGGGACTAGTTATTGGT+TGG + chr1_4:55968725-55968744 None:intergenic 40.0%
ATCTGAAGGACAATGTCAGT+AGG + chr1_4:55968754-55968773 None:intergenic 40.0%
TAGGAAGCAGTTACGTATCT+TGG + chr1_4:55968843-55968862 None:intergenic 40.0%
!! ATATCCCCTTATCCGCTTTT+TGG - chr1_4:55969170-55969189 Msa0171280:intron 40.0%
ATGACCAAAAAGCGGATAAG+GGG + chr1_4:55969177-55969196 None:intergenic 40.0%
CATGACCAAAAAGCGGATAA+GGG + chr1_4:55969178-55969197 None:intergenic 40.0%
ACATGACCAAAAAGCGGATA+AGG + chr1_4:55969179-55969198 None:intergenic 40.0%
CTTGCAACATGACCAAAAAG+CGG + chr1_4:55969185-55969204 None:intergenic 40.0%
CTGATCCTTGTTCTCATCTT+AGG - chr1_4:55969655-55969674 Msa0171280:intron 40.0%
!! GTTGATTTGTTTCTACCCAC+CGG - chr1_4:55969726-55969745 Msa0171280:intron 40.0%
ATTTACTCGCAAGATTTGCC+AGG - chr1_4:55969861-55969880 Msa0171280:intron 40.0%
TTTACTCGCAAGATTTGCCA+GGG - chr1_4:55969862-55969881 Msa0171280:intron 40.0%
AGGAAGTTAAAGCGCAGATA+TGG - chr1_4:55969957-55969976 Msa0171280:intron 40.0%
GGAAGTTAAAGCGCAGATAT+GGG - chr1_4:55969958-55969977 Msa0171280:intron 40.0%
TTCTGGTATATGACATCAGC+AGG - chr1_4:55970047-55970066 Msa0171280:intron 40.0%
! CGTCAAACGTTTGATAGCAT+TGG - chr1_4:55970070-55970089 Msa0171280:five_prime_UTR 40.0%
CCTCAAGGAAAAGAATGAAG+AGG + chr1_4:55970343-55970362 None:intergenic 40.0%
! CCTCTTCATTCTTTTCCTTG+AGG - chr1_4:55970340-55970359 Msa0171280:intron 40.0%
TGGGAACAAGTCAGATCTTA+AGG - chr1_4:55970972-55970991 Msa0171280:intron 40.0%
! GGCACAAGGTTTGTTCTTTA+TGG - chr1_4:55971038-55971057 Msa0171280:intron 40.0%
CTACAACATATTAAGCCGGA+AGG - chr1_4:55971122-55971141 Msa0171280:intron 40.0%
CTTGAGACATCATAACCTTC+CGG + chr1_4:55971140-55971159 None:intergenic 40.0%
TCAAGAAAGATGATGCTTCC+TGG - chr1_4:55971163-55971182 Msa0171280:intron 40.0%
GATGCTTCCTGGATTGAAAA+TGG - chr1_4:55971174-55971193 Msa0171280:intron 40.0%
! CCAGTCTGTTAACTTTTTGC+AGG + chr1_4:55971474-55971493 None:intergenic 40.0%
CCTGCAAAAAGTTAACAGAC+TGG - chr1_4:55971471-55971490 Msa0171280:intron 40.0%
TGCTGATATGCGATTGAAGG+AGG + chr1_4:55966523-55966542 None:intergenic 45.0%
CGACATCATCACATTCGTTC+TGG - chr1_4:55966835-55966854 Msa0171280:CDS 45.0%
! ACTAGTGAGTTGACACCACA+TGG + chr1_4:55966875-55966894 None:intergenic 45.0%
AGCTTGACTTTGTAACCTCG+AGG - chr1_4:55966898-55966917 Msa0171280:CDS 45.0%
GCTTGACTTTGTAACCTCGA+GGG - chr1_4:55966899-55966918 Msa0171280:CDS 45.0%
! GATTTGAAGTCTATCCCTCG+AGG + chr1_4:55966916-55966935 None:intergenic 45.0%
GTGTGGTTAACCTGAGATAG+GGG + chr1_4:55967140-55967159 None:intergenic 45.0%
GAGTGTGGTTAACCTGAGAT+AGG + chr1_4:55967142-55967161 None:intergenic 45.0%
AAACACACTCAGCATGAGTG+TGG + chr1_4:55967157-55967176 None:intergenic 45.0%
TTAAGGTCAGGTCAGCTACA+TGG + chr1_4:55967314-55967333 None:intergenic 45.0%
CTTCAGACATGAGATCCCTT+TGG + chr1_4:55967444-55967463 None:intergenic 45.0%
AGTTGGAGTTCAAAGGACTG+AGG - chr1_4:55967763-55967782 Msa0171280:CDS 45.0%
GTTGGAGTTCAAAGGACTGA+GGG - chr1_4:55967764-55967783 Msa0171280:CDS 45.0%
TTGGAGTTCAAAGGACTGAG+GGG - chr1_4:55967765-55967784 Msa0171280:CDS 45.0%
AAAGGACTGAGGGGAAAACA+AGG - chr1_4:55967774-55967793 Msa0171280:CDS 45.0%
ATCTAACCATAACTGGGCTG+TGG - chr1_4:55968094-55968113 Msa0171280:exon 45.0%
TCTAACCATAACTGGGCTGT+GGG - chr1_4:55968095-55968114 Msa0171280:exon 45.0%
! TGTGGGAAGTGACTTTTTGC+AGG - chr1_4:55968112-55968131 Msa0171280:five_prime_UTR 45.0%
AACCTTCGTTGGAAGACTTC+TGG - chr1_4:55968378-55968397 Msa0171280:five_prime_UTR 45.0%
ATCCAGAAGTCTTCCAACGA+AGG + chr1_4:55968383-55968402 None:intergenic 45.0%
TCACATATGCAACCTCAAGG+TGG - chr1_4:55968479-55968498 Msa0171280:intron 45.0%
TATGCAACCTCAAGGTGGAA+AGG - chr1_4:55968484-55968503 Msa0171280:intron 45.0%
TCCATCCAAGAATGAGAGCT+TGG - chr1_4:55968686-55968705 Msa0171280:intron 45.0%
ACCAAGCTCTCATTCTTGGA+TGG + chr1_4:55968690-55968709 None:intergenic 45.0%
GAGAACCAAGCTCTCATTCT+TGG + chr1_4:55968694-55968713 None:intergenic 45.0%
! AGAATGAGAGCTTGGTTCTC+CGG - chr1_4:55968694-55968713 Msa0171280:intron 45.0%
!! ACATCATGTTCTGGAGGAGA+GGG + chr1_4:55968949-55968968 None:intergenic 45.0%
!! AACATCATGTTCTGGAGGAG+AGG + chr1_4:55968950-55968969 None:intergenic 45.0%
TTATACCCAGAAGGGAAGGA+GGG + chr1_4:55969402-55969421 None:intergenic 45.0%
ATTATACCCAGAAGGGAAGG+AGG + chr1_4:55969403-55969422 None:intergenic 45.0%
GATTCATTTGGACAGAGGTC+TGG - chr1_4:55969476-55969495 Msa0171280:intron 45.0%
! CACCCAACTGTTGCTTCATA+AGG - chr1_4:55969531-55969550 Msa0171280:intron 45.0%
GAGAAAGCCAGAATCCATGA+TGG - chr1_4:55969694-55969713 Msa0171280:intron 45.0%
! GCATATTATAGGGGTGCAGT+TGG - chr1_4:55970019-55970038 Msa0171280:intron 45.0%
!! CGTTTGATAGCATTGGTCGA+TGG - chr1_4:55970077-55970096 Msa0171280:five_prime_UTR 45.0%
AGATCTTAAGGATGCGAGAG+AGG - chr1_4:55970984-55971003 Msa0171280:intron 45.0%
AGCAGAAGGGGAGACAAAAA+AGG - chr1_4:55971233-55971252 Msa0171280:intron 45.0%
GCAGAAGGGGAGACAAAAAA+GGG - chr1_4:55971234-55971253 Msa0171280:intron 45.0%
!!! CCTAGCTGCATTTTCAGGTT+TGG + chr1_4:55971327-55971346 None:intergenic 45.0%
CCAAACCTGAAAATGCAGCT+AGG - chr1_4:55971324-55971343 Msa0171280:five_prime_UTR 45.0%
!!! ATTAATATTAATTTGTATTT+TGG + chr1_4:55968621-55968640 None:intergenic 5.0%
! CTTTTCTTTGCGTTGCGCCT+CGG + chr1_4:55966400-55966419 None:intergenic 50.0%
GAGTTGACACCACATGGACA+CGG + chr1_4:55966869-55966888 None:intergenic 50.0%
TTTGGGCATGAAACCGGACA+AGG + chr1_4:55967426-55967445 None:intergenic 50.0%
TTGTCCGGTTTCATGCCCAA+AGG - chr1_4:55967425-55967444 Msa0171280:intron 50.0%
TGTCCGGTTTCATGCCCAAA+GGG - chr1_4:55967426-55967445 Msa0171280:intron 50.0%
GATCCCTTTGGGCATGAAAC+CGG + chr1_4:55967432-55967451 None:intergenic 50.0%
GCAGGGTGAAATCACCCAAA+TGG + chr1_4:55967484-55967503 None:intergenic 50.0%
AGCTGCAAGCTTGATGCAGA+GGG + chr1_4:55968063-55968082 None:intergenic 50.0%
AAGCTGCAAGCTTGATGCAG+AGG + chr1_4:55968064-55968083 None:intergenic 50.0%
TTGTGTGCCTTTCCACCTTG+AGG + chr1_4:55968494-55968513 None:intergenic 50.0%
! TCAAGGTGGAAAGGCACACA+AGG - chr1_4:55968493-55968512 Msa0171280:intron 50.0%
! AAAGGCACACAAGGAACCCA+TGG - chr1_4:55968502-55968521 Msa0171280:intron 50.0%
AAGGCACACAAGGAACCCAT+GGG - chr1_4:55968503-55968522 Msa0171280:intron 50.0%
AGCCACCCTGTAATACGTTG+AGG - chr1_4:55968531-55968550 Msa0171280:intron 50.0%
CACCTCAACGTATTACAGGG+TGG + chr1_4:55968536-55968555 None:intergenic 50.0%
! TGAGGTGTTATCCGTATGCC+AGG - chr1_4:55968549-55968568 Msa0171280:intron 50.0%
! GAGGTGTTATCCGTATGCCA+GGG - chr1_4:55968550-55968569 Msa0171280:intron 50.0%
GAGGAGAGGGATATGGTGTT+AGG + chr1_4:55968936-55968955 None:intergenic 50.0%
!! TGTTCTGGAGGAGAGGGATA+TGG + chr1_4:55968943-55968962 None:intergenic 50.0%
TTATACCCCTCCTTCCCTTC+TGG - chr1_4:55969393-55969412 Msa0171280:intron 50.0%
TATACCCCTCCTTCCCTTCT+GGG - chr1_4:55969394-55969413 Msa0171280:intron 50.0%
TATACCCAGAAGGGAAGGAG+GGG + chr1_4:55969401-55969420 None:intergenic 50.0%
!! AGAGTTGCTGACTTTCCGGT+GGG + chr1_4:55969744-55969763 None:intergenic 50.0%
!! AAGAGTTGCTGACTTTCCGG+TGG + chr1_4:55969745-55969764 None:intergenic 50.0%
ACCGGAAAGTCAGCAACTCT+TGG - chr1_4:55969744-55969763 Msa0171280:intron 50.0%
!! CCCAAGAGTTGCTGACTTTC+CGG + chr1_4:55969748-55969767 None:intergenic 50.0%
CCGGAAAGTCAGCAACTCTT+GGG - chr1_4:55969745-55969764 Msa0171280:intron 50.0%
AAGGGGATCGATCAGCAGAA+GGG - chr1_4:55971220-55971239 Msa0171280:intron 50.0%
GACCAATGTCCGTGTCCATG+TGG - chr1_4:55966857-55966876 Msa0171280:CDS 55.0%
CACCACATGGACACGGACAT+TGG + chr1_4:55966862-55966881 None:intergenic 55.0%
CCAGAAACCTCTGCCTTGTC+CGG - chr1_4:55967410-55967429 Msa0171280:intron 55.0%
CATGAAACCGGACAAGGCAG+AGG + chr1_4:55967420-55967439 None:intergenic 55.0%
GCAAGCTTGATGCAGAGGGA+GGG + chr1_4:55968059-55968078 None:intergenic 55.0%
TGCAAGCTTGATGCAGAGGG+AGG + chr1_4:55968060-55968079 None:intergenic 55.0%
CACTTCCCACAGCCCAGTTA+TGG + chr1_4:55968103-55968122 None:intergenic 55.0%
GACAGAGGTCTGGATGCTGA+TGG - chr1_4:55969486-55969505 Msa0171280:intron 55.0%
AGAGGTCTGGATGCTGATGG+TGG - chr1_4:55969489-55969508 Msa0171280:intron 55.0%
CAACTCTTGGGACTCGCAGA+TGG - chr1_4:55969757-55969776 Msa0171280:intron 55.0%
CGCAGATATGGGACACAGCT+GGG - chr1_4:55969969-55969988 Msa0171280:intron 55.0%
!! TGCGAGAGAGGTACCTACGA+CGG - chr1_4:55970996-55971015 Msa0171280:intron 55.0%
!! AGAGAGGTACCTACGACGGA+AGG - chr1_4:55971000-55971019 Msa0171280:intron 55.0%
! AAGGCGTTAGCTGAGGCACA+AGG - chr1_4:55971024-55971043 Msa0171280:intron 55.0%
GAAGGGGATCGATCAGCAGA+AGG - chr1_4:55971219-55971238 Msa0171280:intron 55.0%
AGGGGATCGATCAGCAGAAG+GGG - chr1_4:55971221-55971240 Msa0171280:intron 55.0%
CCGGACAAGGCAGAGGTTTC+TGG + chr1_4:55967413-55967432 None:intergenic 60.0%
CAGGGTGGCTTAGCACCCAT+GGG + chr1_4:55968521-55968540 None:intergenic 60.0%
ACAGGGTGGCTTAGCACCCA+TGG + chr1_4:55968522-55968541 None:intergenic 60.0%
GCGCAGATATGGGACACAGC+TGG - chr1_4:55969968-55969987 Msa0171280:intron 60.0%
! GGGTGCAGTTGGAGCACTTC+TGG - chr1_4:55970030-55970049 Msa0171280:intron 60.0%
GGTACCTACGACGGAAGGCA+AGG - chr1_4:55971005-55971024 Msa0171280:intron 60.0%
AACGCCTTGCCTTCCGTCGT+AGG + chr1_4:55971012-55971031 None:intergenic 60.0%
! GGAAGGCAAGGCGTTAGCTG+AGG - chr1_4:55971017-55971036 Msa0171280:intron 60.0%
GGGACACAGCTGGGCAAGAG+AGG - chr1_4:55969978-55969997 Msa0171280:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 55966347 55971527 55966347 ID=Msa0171280;Name=Msa0171280
chr1_4 mRNA 55966347 55971527 55966347 ID=Msa0171280-mRNA-1;Parent=Msa0171280;Name=Msa0171280-mRNA-1;_AED=0.07;_eAED=0.07;_QI=464|1|1|1|0.2|0.16|6|255|224
chr1_4 exon 55966347 55966936 55966347 ID=Msa0171280-mRNA-1:exon:16821;Parent=Msa0171280-mRNA-1
chr1_4 exon 55967759 55968197 55967759 ID=Msa0171280-mRNA-1:exon:16820;Parent=Msa0171280-mRNA-1
chr1_4 exon 55968322 55968414 55968322 ID=Msa0171280-mRNA-1:exon:16819;Parent=Msa0171280-mRNA-1
chr1_4 exon 55970062 55970140 55970062 ID=Msa0171280-mRNA-1:exon:16818;Parent=Msa0171280-mRNA-1
chr1_4 exon 55971314 55971485 55971314 ID=Msa0171280-mRNA-1:exon:16817;Parent=Msa0171280-mRNA-1
chr1_4 exon 55971507 55971527 55971507 ID=Msa0171280-mRNA-1:exon:16816;Parent=Msa0171280-mRNA-1
chr1_4 five_prime_UTR 55971507 55971527 55971507 ID=Msa0171280-mRNA-1:five_prime_utr;Parent=Msa0171280-mRNA-1
chr1_4 five_prime_UTR 55971314 55971485 55971314 ID=Msa0171280-mRNA-1:five_prime_utr;Parent=Msa0171280-mRNA-1
chr1_4 five_prime_UTR 55970062 55970140 55970062 ID=Msa0171280-mRNA-1:five_prime_utr;Parent=Msa0171280-mRNA-1
chr1_4 five_prime_UTR 55968322 55968414 55968322 ID=Msa0171280-mRNA-1:five_prime_utr;Parent=Msa0171280-mRNA-1
chr1_4 five_prime_UTR 55968099 55968197 55968099 ID=Msa0171280-mRNA-1:five_prime_utr;Parent=Msa0171280-mRNA-1
chr1_4 CDS 55967759 55968098 55967759 ID=Msa0171280-mRNA-1:cds;Parent=Msa0171280-mRNA-1
chr1_4 CDS 55966602 55966936 55966602 ID=Msa0171280-mRNA-1:cds;Parent=Msa0171280-mRNA-1
chr1_4 three_prime_UTR 55966347 55966601 55966347 ID=Msa0171280-mRNA-1:three_prime_utr;Parent=Msa0171280-mRNA-1
Gene Sequence

>Msa0171280

ATGGCATTTAATAATGAAGAAGAGAAGACAGAGGATTACCTTTTCAAAATTGTCTTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTACTCGCAAGATTTGCCAGGGATGAATTTTATCCTAATTCAAAGTCTACTATAGGAGTAGAGTTCCAAACTCAAAAAATGGAAATTAACGGAAAGGAAGTTAAAGCGCAGATATGGGACACAGCTGGGCAAGAGAGGTTCAGAGCTGTTACTTCTGCATATTATAGGGGTGCAGTTGGAGCACTTCTGGTATATGACATCAGCAGGCGTCAAACGTTTGATAGCATTGGTCGATGGCTTAACGAACTTCACACTCACTCTGATATGAACGTTGTCACAATACTTGTTGGGAACAAGTCAGATCTTAAGGATGCGAGAGAGGTACCTACGACGGAAGGCAAGGCGTTAGCTGAGGCACAAGGTTTGTTCTTTATGGAGACATCAGCACTTGATTCATCAAATGTAGTTGCTGCTTTTCAAACAGTTGTAAAAGAAATCTACAACATATTAAGCCGGAAGGTTATGATGTCTCAAGAGCTCAAGAAAGATGATGCTTCCTGGATTGAAAATGGAAAGACTGTTGTTCTACAACAAGAAGGGGATCGATCAGCAGAAGGGGAGACAAAAAAGGGTTGTTGTTCGAAATAG
Protein sequence

>Msa0171280

MAFNNEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVPTTEGKALAEAQGLFFMETSALDSSNVVAAFQTVVKEIYNILSRKVMMSQELKKDDASWIENGKTVVLQQEGDRSAEGETKKGCCSK*