Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011930 | Msa0805450 | 0.804386 | 2.214559e-49 | -8.615850e-47 |
| Msa0043500 | Msa0805450 | 0.800053 | 1.725889e-48 | -8.615850e-47 |
| Msa0056450 | Msa0805450 | 0.821903 | 3.151359e-53 | -8.615850e-47 |
| Msa0070170 | Msa0805450 | 0.808122 | 3.616289e-50 | -8.615850e-47 |
| Msa0078640 | Msa0805450 | 0.801378 | 9.262115e-49 | -8.615850e-47 |
| Msa0108390 | Msa0805450 | 0.809084 | 2.253287e-50 | -8.615850e-47 |
| Msa0638350 | Msa0805450 | 0.814469 | 1.516527e-51 | -8.615850e-47 |
| Msa0640500 | Msa0805450 | 0.807138 | 5.851629e-50 | -8.615850e-47 |
| Msa0661320 | Msa0805450 | 0.805679 | 1.188345e-49 | -8.615850e-47 |
| Msa0690310 | Msa0805450 | 0.807952 | 3.930962e-50 | -8.615850e-47 |
| Msa0805450 | Msa0812370 | 0.816872 | 4.420922e-52 | -8.615850e-47 |
| Msa0805450 | Msa0868160 | 0.806755 | 7.051239e-50 | -8.615850e-47 |
| Msa0805450 | Msa0928490 | 0.805545 | 1.267782e-49 | -8.615850e-47 |
| Msa0805450 | Msa1000930 | 0.802472 | 5.519141e-49 | -8.615850e-47 |
| Msa0805450 | Msa1034500 | 0.811453 | 6.947356e-51 | -8.615850e-47 |
| Msa0805450 | Msa1069820 | 0.809876 | 1.523442e-50 | -8.615850e-47 |
| Msa0805450 | Msa1080640 | 0.801880 | 7.306849e-49 | -8.615850e-47 |
| Msa0805450 | Msa1089450 | 0.801361 | 9.335322e-49 | -8.615850e-47 |
| Msa0805450 | Msa1126450 | 0.800128 | 1.666331e-48 | -8.615850e-47 |
| Msa0805450 | Msa1144880 | 0.803634 | 3.174537e-49 | -8.615850e-47 |
| Msa0805450 | Msa1157570 | 0.801598 | 8.350688e-49 | -8.615850e-47 |
| Msa0805450 | Msa1163540 | 0.830796 | 2.399511e-55 | -8.615850e-47 |
| Msa0805450 | Msa1173300 | 0.809199 | 2.129414e-50 | -8.615850e-47 |
| Msa0805450 | Msa1208580 | 0.801108 | 1.051871e-48 | -8.615850e-47 |
| Msa0805450 | Msa1227640 | 0.812445 | 4.225491e-51 | -8.615850e-47 |
| Msa0805450 | Msa1297170 | 0.806662 | 7.376645e-50 | -8.615850e-47 |
| Msa0805450 | Msa1306560 | 0.812453 | 4.206633e-51 | -8.615850e-47 |
| Msa0805450 | Msa1307600 | 0.822631 | 2.136399e-53 | -8.615850e-47 |
| Msa0805450 | Msa1323990 | 0.810837 | 9.451000e-51 | -8.615850e-47 |
| Msa0805450 | Msa1329450 | 0.806730 | 7.137911e-50 | -8.615850e-47 |
| Msa0805450 | Msa1371520 | 0.803761 | 2.987585e-49 | -8.615850e-47 |
| Msa0805450 | Msa1389850 | 0.803903 | 2.791973e-49 | -8.615850e-47 |
| Msa0805450 | Msa1389880 | 0.800248 | 1.575806e-48 | -8.615850e-47 |
| Msa0805450 | Msa1390680 | 0.811734 | 6.037320e-51 | -8.615850e-47 |
| Msa0805450 | Msa1390690 | 0.810264 | 1.256916e-50 | -8.615850e-47 |
| Msa0805450 | Msa1390700 | 0.812398 | 4.326675e-51 | -8.615850e-47 |
| Msa0805450 | Msa1392890 | 0.811976 | 5.347852e-51 | -8.615850e-47 |
| Msa0805450 | Msa1392900 | 0.805735 | 1.156312e-49 | -8.615850e-47 |
| Msa0805450 | Msa1392910 | 0.807971 | 3.895150e-50 | -8.615850e-47 |
| Msa0805450 | Msa1418240 | 0.800931 | 1.143371e-48 | -8.615850e-47 |
| Msa0805450 | Msa1418850 | 0.805585 | 1.243181e-49 | -8.615850e-47 |
| Msa0805450 | Msa1465570 | 0.812602 | 3.903373e-51 | -8.615850e-47 |
| Msa0126770 | Msa0805450 | 0.807958 | 3.919972e-50 | -8.615850e-47 |
| Msa0138360 | Msa0805450 | 0.809472 | 1.861063e-50 | -8.615850e-47 |
| Msa0139990 | Msa0805450 | 0.801239 | 9.887885e-49 | -8.615850e-47 |
| Msa0147980 | Msa0805450 | 0.802399 | 5.714980e-49 | -8.615850e-47 |
| Msa0167980 | Msa0805450 | 0.801944 | 7.090638e-49 | -8.615850e-47 |
| Msa0207350 | Msa0805450 | 0.804842 | 1.778594e-49 | -8.615850e-47 |
| Msa0223340 | Msa0805450 | 0.803023 | 4.249387e-49 | -8.615850e-47 |
| Msa0378970 | Msa0805450 | 0.800178 | 1.628192e-48 | -8.615850e-47 |
| Msa0382370 | Msa0805450 | 0.800485 | 1.409727e-48 | -8.615850e-47 |
| Msa0394690 | Msa0805450 | 0.802421 | 5.655043e-49 | -8.615850e-47 |
| Msa0432160 | Msa0805450 | 0.813650 | 2.299222e-51 | -8.615850e-47 |
| Msa0476680 | Msa0805450 | 0.813976 | 1.949018e-51 | -8.615850e-47 |
| Msa0479200 | Msa0805450 | 0.819612 | 1.060072e-52 | -8.615850e-47 |
| Msa0481750 | Msa0805450 | 0.812950 | 3.275357e-51 | -8.615850e-47 |
| Msa0259210 | Msa0805450 | 0.806750 | 7.067968e-50 | -8.615850e-47 |
| Msa0259220 | Msa0805450 | 0.819569 | 1.084128e-52 | -8.615850e-47 |
| Msa0259230 | Msa0805450 | 0.804348 | 2.255862e-49 | -8.615850e-47 |
| Msa0281430 | Msa0805450 | 0.805648 | 1.206353e-49 | -8.615850e-47 |
| Msa0290980 | Msa0805450 | 0.803412 | 3.529803e-49 | -8.615850e-47 |
| Msa0317970 | Msa0805450 | 0.814621 | 1.403224e-51 | -8.615850e-47 |
| Msa0336300 | Msa0805450 | 0.810481 | 1.128211e-50 | -8.615850e-47 |
| Msa0336310 | Msa0805450 | 0.824102 | 9.682314e-54 | -8.615850e-47 |
| Msa0336320 | Msa0805450 | 0.813690 | 2.253160e-51 | -8.615850e-47 |
| Msa0342010 | Msa0805450 | 0.801286 | 9.673877e-49 | -8.615850e-47 |
| Msa0521010 | Msa0805450 | 0.812680 | 3.752889e-51 | -8.615850e-47 |
| Msa0527190 | Msa0805450 | 0.802524 | 5.385615e-49 | -8.615850e-47 |
| Msa0556010 | Msa0805450 | 0.804019 | 2.640102e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATCACATGTATTTAAAA+AGG | 0.237061 | 5_3:-22102472 | Msa0805450:exon |
| ATCCCTCCTCTTTGTTAAAC+TGG | 0.287597 | 5_3:+22099724 | None:intergenic |
| AAGATAAAAGATGAAAATTA+TGG | 0.320475 | 5_3:+22102226 | None:intergenic |
| ATCCTAGAACCTTGCGTGCT+TGG | 0.349297 | 5_3:+22102190 | None:intergenic |
| TCCCTCTCAACCGTGTTTGA+AGG | 0.365061 | 5_3:-22102320 | Msa0805450:CDS |
| ATCCAAGCACGCAAGGTTCT+AGG | 0.381077 | 5_3:-22102192 | Msa0805450:exon |
| AAAATACCCTTGCCACATAA+GGG | 0.394583 | 5_3:+22102404 | None:intergenic |
| AAGAAAAGATGAAAAGTGTA+TGG | 0.395163 | 5_3:-22099689 | Msa0805450:three_prime_UTR |
| ACTCAATACGCTTACATTTG+TGG | 0.396401 | 5_3:+22101927 | None:intergenic |
| GTACTGTACCTGATACAATA+TGG | 0.402588 | 5_3:+22099857 | None:intergenic |
| GTGAAAGATAAGAAAGATCT+TGG | 0.408538 | 5_3:-22099774 | Msa0805450:three_prime_UTR |
| TCATTGGGGAAACATGAAAC+AGG | 0.411716 | 5_3:-22101975 | Msa0805450:three_prime_UTR |
| GAGGAGAACCATATTGTATC+AGG | 0.416982 | 5_3:-22099865 | Msa0805450:intron |
| CATATCAACATAAACATTCA+TGG | 0.435825 | 5_3:+22100054 | None:intergenic |
| CTTGCCACATAAGGGGTGTA+TGG | 0.467182 | 5_3:+22102412 | None:intergenic |
| CGGTTGAGAGGGAGAAGAAA+GGG | 0.467718 | 5_3:+22102330 | None:intergenic |
| TGTGATGGGATCAGATCATT+GGG | 0.482268 | 5_3:-22101990 | Msa0805450:three_prime_UTR |
| TCAGAGCCACAATCGATTCA+AGG | 0.485541 | 5_3:-22102279 | Msa0805450:CDS |
| GTTTAACAAAGAGGAGGGAT+TGG | 0.488431 | 5_3:-22099721 | Msa0805450:three_prime_UTR |
| AACACTGGAAAGTTGGCTAA+TGG | 0.488900 | 5_3:-22100136 | Msa0805450:three_prime_UTR |
| CAATATGGTTCTCCTCTTCA+CGG | 0.490112 | 5_3:+22099872 | None:intergenic |
| GAGATCTAAGAGAGAGAAGA+GGG | 0.490981 | 5_3:+22102352 | None:intergenic |
| TTCAGAAGATTATGCTGTGA+TGG | 0.493099 | 5_3:-22102005 | Msa0805450:three_prime_UTR |
| ACGGTTGAGAGGGAGAAGAA+AGG | 0.500542 | 5_3:+22102329 | None:intergenic |
| GGGGCTGTAATCCATGGAAA+TGG | 0.501769 | 5_3:-22100082 | Msa0805450:three_prime_UTR |
| ACAGGACAACACTGGAAAGT+TGG | 0.504393 | 5_3:-22100143 | Msa0805450:intron |
| CTGTGATGGGATCAGATCAT+TGG | 0.504690 | 5_3:-22101991 | Msa0805450:three_prime_UTR |
| TGAATCGATTGTGGCTCTGA+GGG | 0.521754 | 5_3:+22102282 | None:intergenic |
| TCATGGGGAGACCATTTCCA+TGG | 0.527491 | 5_3:+22100071 | None:intergenic |
| GAATATCTTGAGGAATATGT+TGG | 0.532265 | 5_3:-22099897 | Msa0805450:three_prime_UTR |
| ACCTTCAAACACGGTTGAGA+GGG | 0.532277 | 5_3:+22102319 | None:intergenic |
| AGAAAAGATGAAAAGTGTAT+GGG | 0.540681 | 5_3:-22099688 | Msa0805450:three_prime_UTR |
| GGAGATCTAAGAGAGAGAAG+AGG | 0.543617 | 5_3:+22102351 | None:intergenic |
| GTTGGAGGGGCTGTAATCCA+TGG | 0.544476 | 5_3:-22100088 | Msa0805450:three_prime_UTR |
| ATATCAACATAAACATTCAT+GGG | 0.545871 | 5_3:+22100055 | None:intergenic |
| TGGAAGAGTGGTATGGAGAA+GGG | 0.549448 | 5_3:+22102432 | None:intergenic |
| TCTTCCATACACCCCTTATG+TGG | 0.553547 | 5_3:-22102416 | Msa0805450:CDS |
| TTGAATCGATTGTGGCTCTG+AGG | 0.560216 | 5_3:+22102281 | None:intergenic |
| TCTGAGATTGCGAGAGAAGA+TGG | 0.563728 | 5_3:+22102250 | None:intergenic |
| GACCTTCAAACACGGTTGAG+AGG | 0.564065 | 5_3:+22102318 | None:intergenic |
| TACCAGTTTAACAAAGAGGA+GGG | 0.568079 | 5_3:-22099726 | Msa0805450:three_prime_UTR |
| GGGTGTATGGAAGAGTGGTA+TGG | 0.569311 | 5_3:+22102425 | None:intergenic |
| TCAGAAGATTATGCTGTGAT+GGG | 0.571791 | 5_3:-22102004 | Msa0805450:three_prime_UTR |
| ATGGAAGAGTGGTATGGAGA+AGG | 0.576479 | 5_3:+22102431 | None:intergenic |
| CATACACCCCTTATGTGGCA+AGG | 0.597889 | 5_3:-22102411 | Msa0805450:CDS |
| GTATTACCAGTTTAACAAAG+AGG | 0.598288 | 5_3:-22099730 | Msa0805450:three_prime_UTR |
| CCTCTCTTACAGGACAACAC+TGG | 0.607683 | 5_3:-22100151 | Msa0805450:intron |
| TCTTGGAATCATGAAAGTCA+AGG | 0.609272 | 5_3:-22099757 | Msa0805450:three_prime_UTR |
| TCTCGCAATCCAAGCACGCA+AGG | 0.609643 | 5_3:-22102199 | Msa0805450:CDS |
| ATAAGGGGTGTATGGAAGAG+TGG | 0.614419 | 5_3:+22102420 | None:intergenic |
| TTACCAGTTTAACAAAGAGG+AGG | 0.617647 | 5_3:-22099727 | Msa0805450:three_prime_UTR |
| TGTTGACCTTGAATCGATTG+TGG | 0.626121 | 5_3:+22102273 | None:intergenic |
| ATACACCCCTTATGTGGCAA+GGG | 0.627096 | 5_3:-22102410 | Msa0805450:CDS |
| AAATACCCTTGCCACATAAG+GGG | 0.628337 | 5_3:+22102405 | None:intergenic |
| TCACGTGCAGGAATATCTTG+AGG | 0.635000 | 5_3:-22099907 | Msa0805450:intron |
| AAGATGAAAAGTGTATGGGA+AGG | 0.640402 | 5_3:-22099684 | Msa0805450:three_prime_UTR |
| GAGATTGAGACCTTCAAACA+CGG | 0.650252 | 5_3:+22102310 | None:intergenic |
| AATATGTTGGAACCGTGAAG+AGG | 0.650450 | 5_3:-22099884 | Msa0805450:three_prime_UTR |
| CATTGGGGAAACATGAAACA+GGG | 0.663680 | 5_3:-22101974 | Msa0805450:three_prime_UTR |
| TATCAACATAAACATTCATG+GGG | 0.688765 | 5_3:+22100056 | None:intergenic |
| GTGATGGGATCAGATCATTG+GGG | 0.814520 | 5_3:-22101989 | Msa0805450:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATGGTTTTATATTATT+TGG | - | chr5_3:22100714-22100733 | Msa0805450:intron | 10.0% |
| !! | TAAAATTACTTGAAATAAAA+AGG | - | chr5_3:22101628-22101647 | Msa0805450:intron | 10.0% |
| !! | TATTTATACAAATATCAAAT+AGG | + | chr5_3:22101807-22101826 | None:intergenic | 10.0% |
| !! | TATTTAAAAAGGAAAAAGAT+TGG | - | chr5_3:22099690-22099709 | Msa0805450:three_prime_UTR | 15.0% |
| !! | AAGATAAAAGATGAAAATTA+TGG | + | chr5_3:22099928-22099947 | None:intergenic | 15.0% |
| !! | TTTAAACTTGAAATTAACAA+TGG | + | chr5_3:22100108-22100127 | None:intergenic | 15.0% |
| !!! | TTGTAGTGTTTTAATTTTAA+GGG | - | chr5_3:22100368-22100387 | Msa0805450:intron | 15.0% |
| !! | TATATGAATATGTTGAATTA+TGG | - | chr5_3:22100699-22100718 | Msa0805450:intron | 15.0% |
| !!! | ATAAAGGATTATTATTTCTA+TGG | + | chr5_3:22101865-22101884 | None:intergenic | 15.0% |
| !! | TAATAATCCTTTATTAGTTA+AGG | - | chr5_3:22101871-22101890 | Msa0805450:intron | 15.0% |
| !! | AATAATCCTTTATTAGTTAA+GGG | - | chr5_3:22101872-22101891 | Msa0805450:intron | 15.0% |
| !! | AGATTAAATTTAAGAAAAAC+TGG | - | chr5_3:22101929-22101948 | Msa0805450:intron | 15.0% |
| !! | TTATTCTATATAGAATTGAA+TGG | - | chr5_3:22101958-22101977 | Msa0805450:three_prime_UTR | 15.0% |
| !! | TTGATCACATGTATTTAAAA+AGG | - | chr5_3:22099679-22099698 | Msa0805450:three_prime_UTR | 20.0% |
| !! | CAATGCATAAAAAAGAAAAT+GGG | + | chr5_3:22100035-22100054 | None:intergenic | 20.0% |
| !! | TCAATGCATAAAAAAGAAAA+TGG | + | chr5_3:22100036-22100055 | None:intergenic | 20.0% |
| !!! | CTTGTAGTGTTTTAATTTTA+AGG | - | chr5_3:22100367-22100386 | Msa0805450:intron | 20.0% |
| !! | TGTGATTATGAATCTATTAT+AGG | + | chr5_3:22100525-22100544 | None:intergenic | 20.0% |
| !! | AATAGATTCATAATCACAAT+TGG | - | chr5_3:22100527-22100546 | Msa0805450:intron | 20.0% |
| !!! | TTTTAAAACTCAACATATGA+TGG | + | chr5_3:22100625-22100644 | None:intergenic | 20.0% |
| !!! | TTGAGTTTTAAAATTTTCTG+AGG | - | chr5_3:22100632-22100651 | Msa0805450:intron | 20.0% |
| !!! | TGGTTTTATATTATTTGGAT+AGG | - | chr5_3:22100719-22100738 | Msa0805450:intron | 20.0% |
| !!! | AAAAAAAGAATTTTGAGAAC+GGG | + | chr5_3:22100768-22100787 | None:intergenic | 20.0% |
| !!! | GAAAAAAAGAATTTTGAGAA+CGG | + | chr5_3:22100769-22100788 | None:intergenic | 20.0% |
| !! | ATATAGAATTGAATGGTAAA+AGG | - | chr5_3:22101965-22101984 | Msa0805450:three_prime_UTR | 20.0% |
| !! | ATATCAACATAAACATTCAT+GGG | + | chr5_3:22102099-22102118 | None:intergenic | 20.0% |
| !! | TCATGTTAACATAAAAGATT+AGG | - | chr5_3:22102162-22102181 | Msa0805450:three_prime_UTR | 20.0% |
| !! | AGTTATGTCTTTTAGCAATT+AGG | - | chr5_3:22100399-22100418 | Msa0805450:intron | 25.0% |
| ! | AGTTATATAGTCATGTCATT+AGG | - | chr5_3:22100468-22100487 | Msa0805450:intron | 25.0% |
| ! | TATGAATCTATTATAGGCAA+AGG | + | chr5_3:22100519-22100538 | None:intergenic | 25.0% |
| ! | ATTCATAATCACAATTGGTT+TGG | - | chr5_3:22100532-22100551 | Msa0805450:intron | 25.0% |
| ! | ATGTAAAGCTCAAACTATAA+TGG | + | chr5_3:22100572-22100591 | None:intergenic | 25.0% |
| !!! | AAATTTTCTGAGGATGATTT+AGG | - | chr5_3:22100642-22100661 | Msa0805450:intron | 25.0% |
| !!! | AATTTTCTGAGGATGATTTA+GGG | - | chr5_3:22100643-22100662 | Msa0805450:intron | 25.0% |
| !!! | AAAAAAGAATTTTGAGAACG+GGG | + | chr5_3:22100767-22100786 | None:intergenic | 25.0% |
| ! | AAGTAAAGACTAAAGAAAAC+AGG | + | chr5_3:22100868-22100887 | None:intergenic | 25.0% |
| !!! | TCTACTTTGTTTCTAAACTT+TGG | - | chr5_3:22101020-22101039 | Msa0805450:intron | 25.0% |
| !! | TTTTTATGAGTGAGATTTCT+AGG | - | chr5_3:22101368-22101387 | Msa0805450:intron | 25.0% |
| !!! | TCGTAGTTATTTTATTGAGA+AGG | + | chr5_3:22101567-22101586 | None:intergenic | 25.0% |
| !! | GATTTTTGTTGAATGTTGTT+TGG | - | chr5_3:22101661-22101680 | Msa0805450:intron | 25.0% |
| !!! | ACACAACTATTGATTTTTCT+AGG | - | chr5_3:22101740-22101759 | Msa0805450:intron | 25.0% |
| ! | TATCAACATAAACATTCATG+GGG | + | chr5_3:22102098-22102117 | None:intergenic | 25.0% |
| ! | CATATCAACATAAACATTCA+TGG | + | chr5_3:22102100-22102119 | None:intergenic | 25.0% |
| !! | AAATTTTATATATCACGTGC+AGG | - | chr5_3:22102232-22102251 | Msa0805450:CDS | 25.0% |
| ! | CTGAAAAGAATCTTCAATTT+AGG | - | chr5_3:22102320-22102339 | Msa0805450:CDS | 25.0% |
| !! | AAGAAAAGATGAAAAGTGTA+TGG | - | chr5_3:22102462-22102481 | Msa0805450:CDS | 25.0% |
| !! | AGAAAAGATGAAAAGTGTAT+GGG | - | chr5_3:22102463-22102482 | Msa0805450:CDS | 25.0% |
| ! | ACAAGATTTTCGGTAAGATT+CGG | - | chr5_3:22100006-22100025 | Msa0805450:intron | 30.0% |
| AAATGTAAGCGTATTGAGTT+GGG | - | chr5_3:22100228-22100247 | Msa0805450:intron | 30.0% | |
| AACAGGAACAGAAAAATACA+GGG | + | chr5_3:22100280-22100299 | None:intergenic | 30.0% | |
| AAACAGGAACAGAAAAATAC+AGG | + | chr5_3:22100281-22100300 | None:intergenic | 30.0% | |
| AATATCTGTGCTGAAGAAAA+AGG | + | chr5_3:22100329-22100348 | None:intergenic | 30.0% | |
| AGCACAGATATTTAGTAGTT+GGG | - | chr5_3:22100337-22100356 | Msa0805450:intron | 30.0% | |
| ! | CTATAATGGAGTTCATAGAA+TGG | + | chr5_3:22100558-22100577 | None:intergenic | 30.0% |
| !!! | TCTTTTTTTCTGTGTAGTGT+TGG | - | chr5_3:22100779-22100798 | Msa0805450:intron | 30.0% |
| ! | CGTTCATAACACGTTTTATA+GGG | + | chr5_3:22100811-22100830 | None:intergenic | 30.0% |
| ! | TCGTTCATAACACGTTTTAT+AGG | + | chr5_3:22100812-22100831 | None:intergenic | 30.0% |
| ! | CGTTCATAACACGTTTTATA+GGG | + | chr5_3:22100811-22100830 | None:intergenic | 30.0% |
| ! | TCGTTCATAACACGTTTTAT+AGG | + | chr5_3:22100812-22100831 | None:intergenic | 30.0% |
| GCTTAGAGTAATGTAAAACA+TGG | - | chr5_3:22100903-22100922 | Msa0805450:intron | 30.0% | |
| ! | ATTTGATAATATTGCCTGCA+AGG | + | chr5_3:22100946-22100965 | None:intergenic | 30.0% |
| GTCAAAATTGTGTATCTTTC+AGG | - | chr5_3:22101067-22101086 | Msa0805450:intron | 30.0% | |
| GCTTATAGTAATACTAAGCA+TGG | - | chr5_3:22101186-22101205 | Msa0805450:intron | 30.0% | |
| ATTGACAAAAACTACATGCA+AGG | + | chr5_3:22101232-22101251 | None:intergenic | 30.0% | |
| ! | CATGTAGTTTTTGTCAATCA+CGG | - | chr5_3:22101234-22101253 | Msa0805450:intron | 30.0% |
| ! | TATTTGGTAGTATACAACTG+TGG | - | chr5_3:22101307-22101326 | Msa0805450:intron | 30.0% |
| TTTCACTTTCAATGTACTCT+TGG | - | chr5_3:22101486-22101505 | Msa0805450:intron | 30.0% | |
| ! | ATTGAGAAGGTTTTCCTTTA+CGG | + | chr5_3:22101554-22101573 | None:intergenic | 30.0% |
| TGTGTTAATGTGCTATCTTT+AGG | - | chr5_3:22102194-22102213 | Msa0805450:CDS | 30.0% | |
| GAATATCTTGAGGAATATGT+TGG | - | chr5_3:22102254-22102273 | Msa0805450:CDS | 30.0% | |
| TCTTTCTTATCTTTCACCTT+GGG | + | chr5_3:22102374-22102393 | None:intergenic | 30.0% | |
| ATCTTTCTTATCTTTCACCT+TGG | + | chr5_3:22102375-22102394 | None:intergenic | 30.0% | |
| GTGAAAGATAAGAAAGATCT+TGG | - | chr5_3:22102377-22102396 | Msa0805450:CDS | 30.0% | |
| GTATTACCAGTTTAACAAAG+AGG | - | chr5_3:22102421-22102440 | Msa0805450:CDS | 30.0% | |
| AAAATACCCTTGCCACATAA+GGG | + | chr5_3:22099750-22099769 | None:intergenic | 35.0% | |
| AAAAATACCCTTGCCACATA+AGG | + | chr5_3:22099751-22099770 | None:intergenic | 35.0% | |
| ! | ATCAGCTACGACAAGATTTT+CGG | - | chr5_3:22099996-22100015 | Msa0805450:intron | 35.0% |
| TTCAGAAGATTATGCTGTGA+TGG | - | chr5_3:22100146-22100165 | Msa0805450:intron | 35.0% | |
| TCAGAAGATTATGCTGTGAT+GGG | - | chr5_3:22100147-22100166 | Msa0805450:intron | 35.0% | |
| ACTCAATACGCTTACATTTG+TGG | + | chr5_3:22100227-22100246 | None:intergenic | 35.0% | |
| CAAATGTAAGCGTATTGAGT+TGG | - | chr5_3:22100227-22100246 | Msa0805450:intron | 35.0% | |
| ATCAAAGTAGCGAACAAAAC+AGG | + | chr5_3:22100297-22100316 | None:intergenic | 35.0% | |
| CAGCACAGATATTTAGTAGT+TGG | - | chr5_3:22100336-22100355 | Msa0805450:intron | 35.0% | |
| !! | CAATTAGGTTGTTTTCTTCC+AGG | - | chr5_3:22100414-22100433 | Msa0805450:intron | 35.0% |
| TATAACTCTAACCATTGCAC+TGG | + | chr5_3:22100455-22100474 | None:intergenic | 35.0% | |
| ATAGTCATGTCATTAGGTCA+TGG | - | chr5_3:22100474-22100493 | Msa0805450:intron | 35.0% | |
| TAGTCATGTCATTAGGTCAT+GGG | - | chr5_3:22100475-22100494 | Msa0805450:intron | 35.0% | |
| ATGGCATAAGTTCTTGGAAA+AGG | + | chr5_3:22100606-22100625 | None:intergenic | 35.0% | |
| CATATGATGGCATAAGTTCT+TGG | + | chr5_3:22100612-22100631 | None:intergenic | 35.0% | |
| ! | TAACACGTTTTATAGGGAAG+TGG | + | chr5_3:22100805-22100824 | None:intergenic | 35.0% |
| TCAAAATTGTGTTTCCTTGC+AGG | - | chr5_3:22100929-22100948 | Msa0805450:intron | 35.0% | |
| GTGTAGAATAATGTGAAGCA+TGG | - | chr5_3:22101042-22101061 | Msa0805450:intron | 35.0% | |
| AAGTAAAGACTGAAGTGAAC+AGG | + | chr5_3:22101153-22101172 | None:intergenic | 35.0% | |
| AATTATATGCCGCTGCTATT+TGG | - | chr5_3:22101291-22101310 | Msa0805450:intron | 35.0% | |
| TGTATACTACCAAATAGCAG+CGG | + | chr5_3:22101303-22101322 | None:intergenic | 35.0% | |
| !!! | TTCATTGCTTTTTTGCTCTG+TGG | - | chr5_3:22101412-22101431 | Msa0805450:intron | 35.0% |
| TCTTGGATTTGTGTATCTAG+AGG | - | chr5_3:22101503-22101522 | Msa0805450:intron | 35.0% | |
| TGTTTGGATTGTTTGCGATT+TGG | - | chr5_3:22101677-22101696 | Msa0805450:intron | 35.0% | |
| CTCACACCCTTAACTAATAA+AGG | + | chr5_3:22101881-22101900 | None:intergenic | 35.0% | |
| ! | TTATTAGTTAAGGGTGTGAG+AGG | - | chr5_3:22101881-22101900 | Msa0805450:intron | 35.0% |
| AGAGGTCATACAATCTTACT+TGG | - | chr5_3:22101899-22101918 | Msa0805450:intron | 35.0% | |
| ! | TCAACTTTTGTGAGTGAAGT+TGG | - | chr5_3:22102045-22102064 | Msa0805450:intron | 35.0% |
| GTACTGTACCTGATACAATA+TGG | + | chr5_3:22102297-22102316 | None:intergenic | 35.0% | |
| TCTTGGAATCATGAAAGTCA+AGG | - | chr5_3:22102394-22102413 | Msa0805450:CDS | 35.0% | |
| TTACCAGTTTAACAAAGAGG+AGG | - | chr5_3:22102424-22102443 | Msa0805450:CDS | 35.0% | |
| TACCAGTTTAACAAAGAGGA+GGG | - | chr5_3:22102425-22102444 | Msa0805450:CDS | 35.0% | |
| ! | AAGATGAAAAGTGTATGGGA+AGG | - | chr5_3:22102467-22102486 | Msa0805450:CDS | 35.0% |
| AAATACCCTTGCCACATAAG+GGG | + | chr5_3:22099749-22099768 | None:intergenic | 40.0% | |
| GAGATCTAAGAGAGAGAAGA+GGG | + | chr5_3:22099802-22099821 | None:intergenic | 40.0% | |
| GAGATTGAGACCTTCAAACA+CGG | + | chr5_3:22099844-22099863 | None:intergenic | 40.0% | |
| TGTTGACCTTGAATCGATTG+TGG | + | chr5_3:22099881-22099900 | None:intergenic | 40.0% | |
| ! | TGTGATGGGATCAGATCATT+GGG | - | chr5_3:22100161-22100180 | Msa0805450:intron | 40.0% |
| TCATTGGGGAAACATGAAAC+AGG | - | chr5_3:22100176-22100195 | Msa0805450:intron | 40.0% | |
| CATTGGGGAAACATGAAACA+GGG | - | chr5_3:22100177-22100196 | Msa0805450:intron | 40.0% | |
| !! | TAGGTTGTTTTCTTCCAGGA+AGG | - | chr5_3:22100418-22100437 | Msa0805450:intron | 40.0% |
| !! | AGGTTGTTTTCTTCCAGGAA+GGG | - | chr5_3:22100419-22100438 | Msa0805450:intron | 40.0% |
| AAAAACAACCCATCAACTGG+AGG | + | chr5_3:22101469-22101488 | None:intergenic | 40.0% | |
| GTGAAAAACAACCCATCAAC+TGG | + | chr5_3:22101472-22101491 | None:intergenic | 40.0% | |
| CTAGAGGAATACATATCTCG+TGG | - | chr5_3:22101519-22101538 | Msa0805450:intron | 40.0% | |
| AAGCACGAACCAGAGAAATT+GGG | - | chr5_3:22101586-22101605 | Msa0805450:intron | 40.0% | |
| ACGACAAAACCCAATTTCTC+TGG | + | chr5_3:22101598-22101617 | None:intergenic | 40.0% | |
| !! | GAGAAATTGGGTTTTGTCGT+CGG | - | chr5_3:22101598-22101617 | Msa0805450:intron | 40.0% |
| !! | AGAAATTGGGTTTTGTCGTC+GGG | - | chr5_3:22101599-22101618 | Msa0805450:intron | 40.0% |
| ! | GTTACTTTCACCTCTCTTAC+AGG | - | chr5_3:22101990-22102009 | Msa0805450:three_prime_UTR | 40.0% |
| AACACTGGAAAGTTGGCTAA+TGG | - | chr5_3:22102015-22102034 | Msa0805450:three_prime_UTR | 40.0% | |
| ! | ACTTTTGTGAGTGAAGTTGG+AGG | - | chr5_3:22102048-22102067 | Msa0805450:intron | 40.0% |
| ! | CTTTTGTGAGTGAAGTTGGA+GGG | - | chr5_3:22102049-22102068 | Msa0805450:intron | 40.0% |
| ! | TTTTGTGAGTGAAGTTGGAG+GGG | - | chr5_3:22102050-22102069 | Msa0805450:intron | 40.0% |
| AATATGTTGGAACCGTGAAG+AGG | - | chr5_3:22102267-22102286 | Msa0805450:CDS | 40.0% | |
| CAATATGGTTCTCCTCTTCA+CGG | + | chr5_3:22102282-22102301 | None:intergenic | 40.0% | |
| GAGGAGAACCATATTGTATC+AGG | - | chr5_3:22102286-22102305 | Msa0805450:CDS | 40.0% | |
| GTCATGACTTGATATACCCA+AGG | - | chr5_3:22102355-22102374 | Msa0805450:CDS | 40.0% | |
| ATCCCTCCTCTTTGTTAAAC+TGG | + | chr5_3:22102430-22102449 | None:intergenic | 40.0% | |
| GTTTAACAAAGAGGAGGGAT+TGG | - | chr5_3:22102430-22102449 | Msa0805450:CDS | 40.0% | |
| TGGAAGAGTGGTATGGAGAA+GGG | + | chr5_3:22099722-22099741 | None:intergenic | 45.0% | |
| ATGGAAGAGTGGTATGGAGA+AGG | + | chr5_3:22099723-22099742 | None:intergenic | 45.0% | |
| ! | ATAAGGGGTGTATGGAAGAG+TGG | + | chr5_3:22099734-22099753 | None:intergenic | 45.0% |
| TCTTCCATACACCCCTTATG+TGG | - | chr5_3:22099735-22099754 | Msa0805450:three_prime_UTR | 45.0% | |
| ATACACCCCTTATGTGGCAA+GGG | - | chr5_3:22099741-22099760 | Msa0805450:three_prime_UTR | 45.0% | |
| GGAGATCTAAGAGAGAGAAG+AGG | + | chr5_3:22099803-22099822 | None:intergenic | 45.0% | |
| ACCTTCAAACACGGTTGAGA+GGG | + | chr5_3:22099835-22099854 | None:intergenic | 45.0% | |
| !! | TGAATCGATTGTGGCTCTGA+GGG | + | chr5_3:22099872-22099891 | None:intergenic | 45.0% |
| ! | TTGAATCGATTGTGGCTCTG+AGG | + | chr5_3:22099873-22099892 | None:intergenic | 45.0% |
| ! | TCAGAGCCACAATCGATTCA+AGG | - | chr5_3:22099872-22099891 | Msa0805450:three_prime_UTR | 45.0% |
| ! | TCTGAGATTGCGAGAGAAGA+TGG | + | chr5_3:22099904-22099923 | None:intergenic | 45.0% |
| ! | CTGTGATGGGATCAGATCAT+TGG | - | chr5_3:22100160-22100179 | Msa0805450:intron | 45.0% |
| ! | GTGATGGGATCAGATCATTG+GGG | - | chr5_3:22100162-22100181 | Msa0805450:intron | 45.0% |
| CGACTCACAAACTTCATGTC+TGG | + | chr5_3:22100257-22100276 | None:intergenic | 45.0% | |
| !! | GGTTGTTTTCTTCCAGGAAG+GGG | - | chr5_3:22100420-22100439 | Msa0805450:intron | 45.0% |
| TAGGTCATGGGTTTCAGTCA+TGG | - | chr5_3:22100487-22100506 | Msa0805450:intron | 45.0% | |
| !!! | TTGCTTTTTTGCTCTGTGGC+AGG | - | chr5_3:22101416-22101435 | Msa0805450:intron | 45.0% |
| ! | TAGCCTTTTCCTCCAGTTGA+TGG | - | chr5_3:22101457-22101476 | Msa0805450:intron | 45.0% |
| ! | AGCCTTTTCCTCCAGTTGAT+GGG | - | chr5_3:22101458-22101477 | Msa0805450:intron | 45.0% |
| AACCCATCAACTGGAGGAAA+AGG | + | chr5_3:22101463-22101482 | None:intergenic | 45.0% | |
| GAAGCACGAACCAGAGAAAT+TGG | - | chr5_3:22101585-22101604 | Msa0805450:intron | 45.0% | |
| ACAGGACAACACTGGAAAGT+TGG | - | chr5_3:22102008-22102027 | Msa0805450:three_prime_UTR | 45.0% | |
| TCACGTGCAGGAATATCTTG+AGG | - | chr5_3:22102244-22102263 | Msa0805450:CDS | 45.0% | |
| GGGTGTATGGAAGAGTGGTA+TGG | + | chr5_3:22099729-22099748 | None:intergenic | 50.0% | |
| ! | CTTGCCACATAAGGGGTGTA+TGG | + | chr5_3:22099742-22099761 | None:intergenic | 50.0% |
| CATACACCCCTTATGTGGCA+AGG | - | chr5_3:22099740-22099759 | Msa0805450:three_prime_UTR | 50.0% | |
| CGGTTGAGAGGGAGAAGAAA+GGG | + | chr5_3:22099824-22099843 | None:intergenic | 50.0% | |
| ACGGTTGAGAGGGAGAAGAA+AGG | + | chr5_3:22099825-22099844 | None:intergenic | 50.0% | |
| TCCCTCTCAACCGTGTTTGA+AGG | - | chr5_3:22099831-22099850 | Msa0805450:intron | 50.0% | |
| GACCTTCAAACACGGTTGAG+AGG | + | chr5_3:22099836-22099855 | None:intergenic | 50.0% | |
| ATCCAAGCACGCAAGGTTCT+AGG | - | chr5_3:22099959-22099978 | Msa0805450:intron | 50.0% | |
| ATCCTAGAACCTTGCGTGCT+TGG | + | chr5_3:22099964-22099983 | None:intergenic | 50.0% | |
| CGTGGATTTGCGAACCGTAA+AGG | - | chr5_3:22101537-22101556 | Msa0805450:intron | 50.0% | |
| CCAGTGTTGTCCTGTAAGAG+AGG | + | chr5_3:22102003-22102022 | None:intergenic | 50.0% | |
| CCTCTCTTACAGGACAACAC+TGG | - | chr5_3:22102000-22102019 | Msa0805450:three_prime_UTR | 50.0% | |
| GGGGCTGTAATCCATGGAAA+TGG | - | chr5_3:22102069-22102088 | Msa0805450:intron | 50.0% | |
| TCATGGGGAGACCATTTCCA+TGG | + | chr5_3:22102083-22102102 | None:intergenic | 50.0% | |
| TCTCGCAATCCAAGCACGCA+AGG | - | chr5_3:22099952-22099971 | Msa0805450:intron | 55.0% | |
| TTCTTCCAGGAAGGGGACCT+CGG | - | chr5_3:22100427-22100446 | Msa0805450:intron | 55.0% | |
| ! | TAACCATTGCACTGGCACCG+AGG | + | chr5_3:22100447-22100466 | None:intergenic | 55.0% |
| GTTGGAGGGGCTGTAATCCA+TGG | - | chr5_3:22102063-22102082 | Msa0805450:intron | 55.0% | |
| !! | GGACCTCGGTGCCAGTGCAA+TGG | - | chr5_3:22100441-22100460 | Msa0805450:intron | 65.0% |
| ! | TGGCACCGAGGTCCCCTTCC+TGG | + | chr5_3:22100435-22100454 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 22099677 | 22102496 | 22099677 | ID=Msa0805450;Name=Msa0805450 |
| chr5_3 | mRNA | 22099677 | 22102496 | 22099677 | ID=Msa0805450-mRNA-1;Parent=Msa0805450;Name=Msa0805450-mRNA-1;_AED=0.20;_eAED=0.20;_QI=10|0.75|0.6|1|0.5|0.6|5|451|97 |
| chr5_3 | exon | 22099677 | 22099796 | 22099677 | ID=Msa0805450-mRNA-1:exon:8870;Parent=Msa0805450-mRNA-1 |
| chr5_3 | exon | 22099866 | 22099919 | 22099866 | ID=Msa0805450-mRNA-1:exon:8869;Parent=Msa0805450-mRNA-1 |
| chr5_3 | exon | 22100021 | 22100161 | 22100021 | ID=Msa0805450-mRNA-1:exon:8868;Parent=Msa0805450-mRNA-1 |
| chr5_3 | exon | 22101942 | 22102040 | 22101942 | ID=Msa0805450-mRNA-1:exon:8867;Parent=Msa0805450-mRNA-1 |
| chr5_3 | exon | 22102156 | 22102496 | 22102156 | ID=Msa0805450-mRNA-1:exon:8866;Parent=Msa0805450-mRNA-1 |
| chr5_3 | five_prime_UTR | 22102487 | 22102496 | 22102487 | ID=Msa0805450-mRNA-1:five_prime_utr;Parent=Msa0805450-mRNA-1 |
| chr5_3 | CDS | 22102193 | 22102486 | 22102193 | ID=Msa0805450-mRNA-1:cds;Parent=Msa0805450-mRNA-1 |
| chr5_3 | three_prime_UTR | 22102156 | 22102192 | 22102156 | ID=Msa0805450-mRNA-1:three_prime_utr;Parent=Msa0805450-mRNA-1 |
| chr5_3 | three_prime_UTR | 22101942 | 22102040 | 22101942 | ID=Msa0805450-mRNA-1:three_prime_utr;Parent=Msa0805450-mRNA-1 |
| chr5_3 | three_prime_UTR | 22100021 | 22100161 | 22100021 | ID=Msa0805450-mRNA-1:three_prime_utr;Parent=Msa0805450-mRNA-1 |
| chr5_3 | three_prime_UTR | 22099866 | 22099919 | 22099866 | ID=Msa0805450-mRNA-1:three_prime_utr;Parent=Msa0805450-mRNA-1 |
| chr5_3 | three_prime_UTR | 22099677 | 22099796 | 22099677 | ID=Msa0805450-mRNA-1:three_prime_utr;Parent=Msa0805450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
