Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299930 | sp|Q948U0|RBOHA_SOLTU | 58.621 | 116 | 47 | 1 | 1 | 116 | 849 | 963 | 3.97e-42 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299930 | A0A072V1M2 | 99.138 | 116 | 1 | 0 | 1 | 116 | 700 | 815 | 5.58e-74 | 244 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006070 | Msa1299930 | 0.803690 | 3.090757e-49 | -8.615850e-47 |
| Msa0017510 | Msa1299930 | 0.824426 | 8.122706e-54 | -8.615850e-47 |
| Msa0046100 | Msa1299930 | 0.801696 | 7.971349e-49 | -8.615850e-47 |
| Msa0068680 | Msa1299930 | 0.806089 | 9.741492e-50 | -8.615850e-47 |
| Msa0089360 | Msa1299930 | 0.827043 | 1.944949e-54 | -8.615850e-47 |
| Msa0655560 | Msa1299930 | 0.804942 | 1.695150e-49 | -8.615850e-47 |
| Msa0657970 | Msa1299930 | 0.814948 | 1.187753e-51 | -8.615850e-47 |
| Msa0663240 | Msa1299930 | 0.802195 | 6.295643e-49 | -8.615850e-47 |
| Msa0688070 | Msa1299930 | 0.803996 | 2.670426e-49 | -8.615850e-47 |
| Msa0688480 | Msa1299930 | 0.818560 | 1.839531e-52 | -8.615850e-47 |
| Msa0692230 | Msa1299930 | 0.823001 | 1.751871e-53 | -8.615850e-47 |
| Msa0693380 | Msa1299930 | 0.815631 | 8.372927e-52 | -8.615850e-47 |
| Msa0750350 | Msa1299930 | 0.802128 | 6.497553e-49 | -8.615850e-47 |
| Msa0825340 | Msa1299930 | 0.804679 | 1.923983e-49 | -8.615850e-47 |
| Msa0122590 | Msa1299930 | 0.800222 | 1.595144e-48 | -8.615850e-47 |
| Msa0157290 | Msa1299930 | 0.824694 | 7.024919e-54 | -8.615850e-47 |
| Msa0166870 | Msa1299930 | 0.820991 | 5.119954e-53 | -8.615850e-47 |
| Msa0188830 | Msa1299930 | 0.808098 | 3.658608e-50 | -8.615850e-47 |
| Msa0205850 | Msa1299930 | 0.804305 | 2.302479e-49 | -8.615850e-47 |
| Msa0223690 | Msa1299930 | 0.801453 | 8.941666e-49 | -8.615850e-47 |
| Msa1233500 | Msa1299930 | 0.815969 | 7.040295e-52 | -8.615850e-47 |
| Msa1233890 | Msa1299930 | 0.818188 | 2.233577e-52 | -8.615850e-47 |
| Msa1239530 | Msa1299930 | 0.800621 | 1.322371e-48 | -8.615850e-47 |
| Msa1299930 | Msa1314340 | 0.823638 | 1.243951e-53 | -8.615850e-47 |
| Msa1299930 | Msa1384350 | 0.831476 | 1.633587e-55 | -8.615850e-47 |
| Msa1299930 | Msa1392260 | 0.806098 | 9.699852e-50 | -8.615850e-47 |
| Msa1299930 | Msa1409870 | 0.802636 | 5.107143e-49 | -8.615850e-47 |
| Msa1299930 | Msa1411020 | 0.819660 | 1.033772e-52 | -8.615850e-47 |
| Msa1299930 | Msa1423390 | 0.803218 | 3.872114e-49 | -8.615850e-47 |
| Msa1299930 | Msa1424290 | 0.812301 | 4.541558e-51 | -8.615850e-47 |
| Msa1299930 | Msa1429900 | 0.810503 | 1.116051e-50 | -8.615850e-47 |
| Msa1299930 | Msa1434350 | 0.813274 | 2.781663e-51 | -8.615850e-47 |
| Msa1299930 | Msa1439320 | 0.811999 | 5.284877e-51 | -8.615850e-47 |
| Msa1299930 | Msa1440370 | 0.801494 | 8.769287e-49 | -8.615850e-47 |
| Msa1299930 | Msa1440810 | 0.802591 | 5.216227e-49 | -8.615850e-47 |
| Msa1299930 | Msa1454120 | 0.809089 | 2.248403e-50 | -8.615850e-47 |
| Msa1299930 | Msa1460020 | 0.803391 | 3.565513e-49 | -8.615850e-47 |
| Msa1299930 | Msa1464940 | 0.806732 | 7.130068e-50 | -8.615850e-47 |
| Msa0376350 | Msa1299930 | 0.802685 | 4.989754e-49 | -8.615850e-47 |
| Msa0379640 | Msa1299930 | 0.810680 | 1.022068e-50 | -8.615850e-47 |
| Msa0388960 | Msa1299930 | 0.803831 | 2.888655e-49 | -8.615850e-47 |
| Msa0389340 | Msa1299930 | 0.839936 | 1.175743e-57 | -8.615850e-47 |
| Msa0417270 | Msa1299930 | 0.829324 | 5.486711e-55 | -8.615850e-47 |
| Msa0417880 | Msa1299930 | 0.809046 | 2.296564e-50 | -8.615850e-47 |
| Msa1082500 | Msa1299930 | 0.837056 | 6.508072e-57 | -8.615850e-47 |
| Msa1085200 | Msa1299930 | 0.804175 | 2.450639e-49 | -8.615850e-47 |
| Msa0243710 | Msa1299930 | 0.803144 | 4.009633e-49 | -8.615850e-47 |
| Msa0244860 | Msa1299930 | 0.807145 | 5.830338e-50 | -8.615850e-47 |
| Msa0274360 | Msa1299930 | 0.804363 | 2.239225e-49 | -8.615850e-47 |
| Msa0283450 | Msa1299930 | 0.805835 | 1.101865e-49 | -8.615850e-47 |
| Msa0333720 | Msa1299930 | -0.801187 | 1.013441e-48 | -8.615850e-47 |
| Msa0335040 | Msa1299930 | 0.808834 | 2.548707e-50 | -8.615850e-47 |
| Msa1108160 | Msa1299930 | 0.804278 | 2.331963e-49 | -8.615850e-47 |
| Msa1151910 | Msa1299930 | 0.805935 | 1.049623e-49 | -8.615850e-47 |
| Msa1162550 | Msa1299930 | -0.806847 | 6.742469e-50 | -8.615850e-47 |
| Msa1224480 | Msa1299930 | 0.807299 | 5.409165e-50 | -8.615850e-47 |
| Msa0484780 | Msa1299930 | 0.828711 | 7.723840e-55 | -8.615850e-47 |
| Msa0507680 | Msa1299930 | 0.804227 | 2.390573e-49 | -8.615850e-47 |
| Msa0509610 | Msa1299930 | 0.804556 | 2.040892e-49 | -8.615850e-47 |
| Msa0512900 | Msa1299930 | 0.805632 | 1.215583e-49 | -8.615850e-47 |
| Msa0577220 | Msa1299930 | 0.812750 | 3.623693e-51 | -8.615850e-47 |
| Msa0588230 | Msa1299930 | 0.801279 | 9.703624e-49 | -8.615850e-47 |
| Msa0844240 | Msa1299930 | 0.811884 | 5.599014e-51 | -8.615850e-47 |
| Msa0880140 | Msa1299930 | 0.821757 | 3.406986e-53 | -8.615850e-47 |
| Msa0933230 | Msa1299930 | 0.816559 | 5.194554e-52 | -8.615850e-47 |
| Msa0969520 | Msa1299930 | 0.820386 | 7.048343e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299930 | MtrunA17_Chr4g0061441 | 99.138 | 116 | 1 | 0 | 1 | 116 | 715 | 830 | 1.59e-77 | 244 |
| Msa1299930 | MtrunA17_Chr8g0387591 | 56.897 | 116 | 49 | 1 | 1 | 116 | 830 | 944 | 2.64e-42 | 147 |
| Msa1299930 | MtrunA17_Chr1g0192121 | 56.897 | 116 | 49 | 1 | 1 | 116 | 771 | 885 | 2.92e-42 | 147 |
| Msa1299930 | MtrunA17_Chr7g0238371 | 58.621 | 116 | 47 | 1 | 1 | 116 | 737 | 851 | 6.56e-42 | 146 |
| Msa1299930 | MtrunA17_Chr7g0272591 | 54.310 | 116 | 52 | 1 | 1 | 116 | 781 | 895 | 1.33e-39 | 139 |
| Msa1299930 | MtrunA17_Chr3g0131401 | 50.862 | 116 | 56 | 1 | 1 | 116 | 809 | 923 | 5.92e-39 | 137 |
| Msa1299930 | MtrunA17_Chr2g0301511 | 55.172 | 116 | 51 | 1 | 1 | 116 | 817 | 931 | 6.46e-39 | 137 |
| Msa1299930 | MtrunA17_Chr8g0385411 | 48.276 | 116 | 59 | 1 | 1 | 116 | 784 | 898 | 2.97e-37 | 133 |
| Msa1299930 | MtrunA17_Chr3g0131381 | 47.414 | 116 | 60 | 1 | 1 | 116 | 803 | 917 | 2.00e-36 | 130 |
| Msa1299930 | MtrunA17_Chr3g0131361 | 49.057 | 106 | 54 | 0 | 11 | 116 | 805 | 910 | 6.55e-34 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299930 | AT1G64060.1 | 56.034 | 116 | 50 | 1 | 1 | 116 | 830 | 944 | 1.21e-41 | 145 |
| Msa1299930 | AT5G60010.1 | 56.034 | 116 | 50 | 1 | 1 | 116 | 772 | 886 | 9.07e-41 | 143 |
| Msa1299930 | AT3G45810.1 | 56.034 | 116 | 50 | 1 | 1 | 116 | 798 | 912 | 9.35e-41 | 143 |
| Msa1299930 | AT5G07390.1 | 51.724 | 116 | 55 | 1 | 1 | 116 | 788 | 902 | 3.14e-39 | 139 |
| Msa1299930 | AT1G09090.2 | 53.448 | 116 | 53 | 1 | 1 | 116 | 729 | 843 | 4.89e-39 | 138 |
| Msa1299930 | AT4G11230.1 | 54.310 | 116 | 52 | 1 | 1 | 116 | 827 | 941 | 8.35e-39 | 137 |
| Msa1299930 | AT5G51060.1 | 53.448 | 116 | 53 | 1 | 1 | 116 | 791 | 905 | 8.38e-39 | 137 |
| Msa1299930 | AT5G47910.1 | 50.862 | 116 | 56 | 1 | 1 | 116 | 807 | 921 | 1.90e-38 | 137 |
| Msa1299930 | AT1G19230.1 | 53.448 | 116 | 53 | 1 | 1 | 116 | 812 | 926 | 3.94e-38 | 135 |
| Msa1299930 | AT1G19230.2 | 53.448 | 116 | 53 | 1 | 1 | 116 | 838 | 952 | 4.52e-38 | 135 |
| Msa1299930 | AT4G25090.1 | 53.448 | 116 | 53 | 1 | 1 | 116 | 735 | 849 | 5.75e-38 | 135 |
| Msa1299930 | AT4G25090.2 | 53.448 | 116 | 53 | 1 | 1 | 116 | 723 | 837 | 5.88e-38 | 135 |
| Msa1299930 | AT5G07390.2 | 49.398 | 83 | 41 | 1 | 1 | 83 | 756 | 837 | 6.76e-24 | 95.5 |
Find 37 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATTGTAACTTGTAATTT+TGG | 0.120175 | 8_3:+61329725 | Msa1299930:three_prime_UTR |
| CATCAAAAGCATATTTATAT+TGG | 0.175154 | 8_3:+61328750 | Msa1299930:five_prime_UTR |
| AATTATCATGACATACATTT+AGG | 0.257833 | 8_3:+61329846 | Msa1299930:three_prime_UTR |
| AACAAATCTAGTTGTGGTTT+TGG | 0.260787 | 8_3:-61329514 | None:intergenic |
| CACATGCTTGCGAGCCAATC+TGG | 0.302263 | 8_3:-61329193 | None:intergenic |
| ATCAAAAGCATATTTATATT+GGG | 0.320618 | 8_3:+61328751 | Msa1299930:five_prime_UTR |
| ATTGCATCAATTCCTCAAAT+AGG | 0.333118 | 8_3:+61329571 | Msa1299930:three_prime_UTR |
| ATGGCACTGACATGGTTTCT+AGG | 0.338259 | 8_3:+61329035 | Msa1299930:CDS |
| GAAAATATGTTGGACCAGTT+TGG | 0.355839 | 8_3:-61329171 | None:intergenic |
| AACTCTGTTGCTAAGTTAGA+TGG | 0.372705 | 8_3:-61329465 | None:intergenic |
| GAGAACAAAACTCCTTTGAT+TGG | 0.377073 | 8_3:+61328780 | Msa1299930:five_prime_UTR |
| TCCTGAGGGAGACGTTCGTT+CGG | 0.439876 | 8_3:+61328973 | Msa1299930:CDS |
| ATATAGATTTACAGATTCTC+TGG | 0.449109 | 8_3:-61329636 | None:intergenic |
| AAGGTACGCTTTCCTATTTG+AGG | 0.467002 | 8_3:-61329583 | None:intergenic |
| GTAAATCTATATGCGCGGTT+TGG | 0.469164 | 8_3:+61329647 | Msa1299930:three_prime_UTR |
| AAAGTGTGATCTGCTGCCTC+AGG | 0.482640 | 8_3:-61329784 | Msa1299940:intron |
| CCTCAGGATATACACTAGTC+AGG | 0.495686 | 8_3:-61328958 | None:intergenic |
| TTGGTTTAGAGATGTAATGA+AGG | 0.502915 | 8_3:+61328799 | Msa1299930:exon |
| AGCAAATTCAACAAAACAGC+AGG | 0.511321 | 8_3:+61328826 | Msa1299930:CDS |
| AAGCATGTGGAAGCTAAGAT+TGG | 0.514974 | 8_3:+61329207 | Msa1299930:CDS |
| GTGGAAAACAAATCTAGTTG+TGG | 0.534759 | 8_3:-61329520 | None:intergenic |
| GCTTTACATCATGCTAAGAA+TGG | 0.539080 | 8_3:+61329016 | Msa1299930:CDS |
| AGCCAATCTGGAAAATATGT+TGG | 0.548278 | 8_3:-61329181 | None:intergenic |
| TCATGACATACATTTAGGAC+AGG | 0.560093 | 8_3:+61329851 | Msa1299930:three_prime_UTR |
| TACATCTCTAAACCAATCAA+AGG | 0.569052 | 8_3:-61328792 | None:intergenic |
| CAGATTGGCTCGCAAGCATG+TGG | 0.574439 | 8_3:+61329194 | Msa1299930:CDS |
| AGAGAATGCAGCTTAACAAA+GGG | 0.575130 | 8_3:+61328722 | Msa1299930:five_prime_UTR |
| CAGAGAATGCAGCTTAACAA+AGG | 0.577606 | 8_3:+61328721 | Msa1299930:five_prime_UTR |
| GTAACTTCTCAAGATTCTGA+AGG | 0.580716 | 8_3:-61329602 | None:intergenic |
| GTGTGTAATGCATGCTACTT+CGG | 0.581801 | 8_3:+61329748 | Msa1299930:three_prime_UTR |
| TGCTAAGAATGGCACTGACA+TGG | 0.604276 | 8_3:+61329027 | Msa1299930:CDS |
| CGGTATTTCACGTACACCTG+AGG | 0.604865 | 8_3:+61329768 | Msa1299930:three_prime_UTR |
| CTGACTAGTGTATATCCTGA+GGG | 0.613557 | 8_3:+61328959 | Msa1299930:CDS |
| AGATCTCTTCTAGCTAGCAA+AGG | 0.614506 | 8_3:-61329890 | Msa1299940:intron |
| CCTGACTAGTGTATATCCTG+AGG | 0.618161 | 8_3:+61328958 | Msa1299930:CDS |
| AGTTACAATGATCAATGTGA+AGG | 0.633564 | 8_3:-61329714 | None:intergenic |
| AATCTGTAAATCTATATGCG+CGG | 0.722768 | 8_3:+61329642 | Msa1299930:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+GGG | - | chr8_3:61329378-61329397 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr8_3:61329379-61329398 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr8_3:61329378-61329397 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr8_3:61329379-61329398 | None:intergenic | 0.0% |
| !!! | ATCAAAAGCATATTTATATT+GGG | + | chr8_3:61328751-61328770 | Msa1299930:five_prime_UTR | 15.0% |
| !! | ACATTACAAGAAAATAATAA+TGG | - | chr8_3:61328910-61328929 | None:intergenic | 15.0% |
| !!! | AAATTACTAAACTTTTTTGA+AGG | + | chr8_3:61329548-61329567 | Msa1299930:exon | 15.0% |
| !!! | ATCAAAAGCATATTTATATT+GGG | + | chr8_3:61328751-61328770 | Msa1299930:five_prime_UTR | 15.0% |
| !! | ACATTACAAGAAAATAATAA+TGG | - | chr8_3:61328910-61328929 | None:intergenic | 15.0% |
| !!! | AAATTACTAAACTTTTTTGA+AGG | + | chr8_3:61329548-61329567 | Msa1299930:exon | 15.0% |
| !!! | CAATATAAATATGCTTTTGA+TGG | - | chr8_3:61328752-61328771 | None:intergenic | 20.0% |
| !!! | CATCAAAAGCATATTTATAT+TGG | + | chr8_3:61328750-61328769 | Msa1299930:five_prime_UTR | 20.0% |
| !!! | TTTTCTTGTAATGTTTTAGT+CGG | + | chr8_3:61328916-61328935 | Msa1299930:intron | 20.0% |
| !!! | TAATTTGTCTGTACATATAA+TGG | - | chr8_3:61329094-61329113 | None:intergenic | 20.0% |
| !! | ATATATATATATATAGGGCT+TGG | - | chr8_3:61329373-61329392 | None:intergenic | 20.0% |
| !!! | ATCATTGTAACTTGTAATTT+TGG | + | chr8_3:61329725-61329744 | Msa1299930:three_prime_UTR | 20.0% |
| !!! | TCATTGTAACTTGTAATTTT+GGG | + | chr8_3:61329726-61329745 | Msa1299930:three_prime_UTR | 20.0% |
| !! | AATTATCATGACATACATTT+AGG | + | chr8_3:61329846-61329865 | Msa1299930:three_prime_UTR | 20.0% |
| !!! | CAATATAAATATGCTTTTGA+TGG | - | chr8_3:61328752-61328771 | None:intergenic | 20.0% |
| !!! | CATCAAAAGCATATTTATAT+TGG | + | chr8_3:61328750-61328769 | Msa1299930:five_prime_UTR | 20.0% |
| !!! | TTTTCTTGTAATGTTTTAGT+CGG | + | chr8_3:61328916-61328935 | Msa1299930:intron | 20.0% |
| !!! | TAATTTGTCTGTACATATAA+TGG | - | chr8_3:61329094-61329113 | None:intergenic | 20.0% |
| !! | ATATATATATATATAGGGCT+TGG | - | chr8_3:61329373-61329392 | None:intergenic | 20.0% |
| !!! | ATCATTGTAACTTGTAATTT+TGG | + | chr8_3:61329725-61329744 | Msa1299930:three_prime_UTR | 20.0% |
| !!! | TCATTGTAACTTGTAATTTT+GGG | + | chr8_3:61329726-61329745 | Msa1299930:three_prime_UTR | 20.0% |
| !! | AATTATCATGACATACATTT+AGG | + | chr8_3:61329846-61329865 | Msa1299930:three_prime_UTR | 20.0% |
| ! | CAATAAAAAACTCCTGTAAA+AGG | - | chr8_3:61329441-61329460 | None:intergenic | 25.0% |
| !!! | TTTACAGGAGTTTTTTATTG+TGG | + | chr8_3:61329441-61329460 | Msa1299930:intron | 25.0% |
| !! | AAGTTTAGTAATTTTCCTTG+TGG | - | chr8_3:61329542-61329561 | None:intergenic | 25.0% |
| ! | ATATAGATTTACAGATTCTC+TGG | - | chr8_3:61329639-61329658 | None:intergenic | 25.0% |
| ! | CAATAAAAAACTCCTGTAAA+AGG | - | chr8_3:61329441-61329460 | None:intergenic | 25.0% |
| !!! | TTTACAGGAGTTTTTTATTG+TGG | + | chr8_3:61329441-61329460 | Msa1299930:intron | 25.0% |
| !! | AAGTTTAGTAATTTTCCTTG+TGG | - | chr8_3:61329542-61329561 | None:intergenic | 25.0% |
| ! | ATATAGATTTACAGATTCTC+TGG | - | chr8_3:61329639-61329658 | None:intergenic | 25.0% |
| TACATCTCTAAACCAATCAA+AGG | - | chr8_3:61328795-61328814 | None:intergenic | 30.0% | |
| TTGGTTTAGAGATGTAATGA+AGG | + | chr8_3:61328799-61328818 | Msa1299930:exon | 30.0% | |
| TCTTTATGATAAATTGCGTC+AGG | - | chr8_3:61328856-61328875 | None:intergenic | 30.0% | |
| TAAAGATAAGATGCACTTAC+AGG | - | chr8_3:61329064-61329083 | None:intergenic | 30.0% | |
| ! | GTGCATCTTATCTTTAACTT+TGG | + | chr8_3:61329068-61329087 | Msa1299930:intron | 30.0% |
| ! | AACTGTAGATTTCCTTTTAC+AGG | + | chr8_3:61329426-61329445 | Msa1299930:intron | 30.0% |
| !!! | TGTGGTTTTGGTTGAAAATT+TGG | - | chr8_3:61329505-61329524 | None:intergenic | 30.0% |
| ! | AACAAATCTAGTTGTGGTTT+TGG | - | chr8_3:61329517-61329536 | None:intergenic | 30.0% |
| !! | AACTAGATTTGTTTTCCACA+AGG | + | chr8_3:61329524-61329543 | Msa1299930:CDS | 30.0% |
| ATTGCATCAATTCCTCAAAT+AGG | + | chr8_3:61329571-61329590 | Msa1299930:three_prime_UTR | 30.0% | |
| AATCTGTAAATCTATATGCG+CGG | + | chr8_3:61329642-61329661 | Msa1299930:three_prime_UTR | 30.0% | |
| AGTTACAATGATCAATGTGA+AGG | - | chr8_3:61329717-61329736 | None:intergenic | 30.0% | |
| ! | AATAGACAAGTTTTACAGAC+AGG | + | chr8_3:61329962-61329981 | Msa1299930:three_prime_UTR | 30.0% |
| TACATCTCTAAACCAATCAA+AGG | - | chr8_3:61328795-61328814 | None:intergenic | 30.0% | |
| TTGGTTTAGAGATGTAATGA+AGG | + | chr8_3:61328799-61328818 | Msa1299930:exon | 30.0% | |
| TCTTTATGATAAATTGCGTC+AGG | - | chr8_3:61328856-61328875 | None:intergenic | 30.0% | |
| TAAAGATAAGATGCACTTAC+AGG | - | chr8_3:61329064-61329083 | None:intergenic | 30.0% | |
| ! | GTGCATCTTATCTTTAACTT+TGG | + | chr8_3:61329068-61329087 | Msa1299930:intron | 30.0% |
| ! | AACTGTAGATTTCCTTTTAC+AGG | + | chr8_3:61329426-61329445 | Msa1299930:intron | 30.0% |
| !!! | TGTGGTTTTGGTTGAAAATT+TGG | - | chr8_3:61329505-61329524 | None:intergenic | 30.0% |
| ! | AACAAATCTAGTTGTGGTTT+TGG | - | chr8_3:61329517-61329536 | None:intergenic | 30.0% |
| !! | AACTAGATTTGTTTTCCACA+AGG | + | chr8_3:61329524-61329543 | Msa1299930:CDS | 30.0% |
| ATTGCATCAATTCCTCAAAT+AGG | + | chr8_3:61329571-61329590 | Msa1299930:three_prime_UTR | 30.0% | |
| AATCTGTAAATCTATATGCG+CGG | + | chr8_3:61329642-61329661 | Msa1299930:three_prime_UTR | 30.0% | |
| AGTTACAATGATCAATGTGA+AGG | - | chr8_3:61329717-61329736 | None:intergenic | 30.0% | |
| ! | AATAGACAAGTTTTACAGAC+AGG | + | chr8_3:61329962-61329981 | Msa1299930:three_prime_UTR | 30.0% |
| AGAGAATGCAGCTTAACAAA+GGG | + | chr8_3:61328722-61328741 | Msa1299930:five_prime_UTR | 35.0% | |
| GAGAACAAAACTCCTTTGAT+TGG | + | chr8_3:61328780-61328799 | Msa1299930:five_prime_UTR | 35.0% | |
| AGCAAATTCAACAAAACAGC+AGG | + | chr8_3:61328826-61328845 | Msa1299930:CDS | 35.0% | |
| !!! | TGTAATGTTTTAGTCGGTTG+TGG | + | chr8_3:61328922-61328941 | Msa1299930:intron | 35.0% |
| GCTTTACATCATGCTAAGAA+TGG | + | chr8_3:61329016-61329035 | Msa1299930:CDS | 35.0% | |
| GAAAATATGTTGGACCAGTT+TGG | - | chr8_3:61329174-61329193 | None:intergenic | 35.0% | |
| ! | GTCCAACATATTTTCCAGAT+TGG | + | chr8_3:61329179-61329198 | Msa1299930:CDS | 35.0% |
| AGCCAATCTGGAAAATATGT+TGG | - | chr8_3:61329184-61329203 | None:intergenic | 35.0% | |
| AACTCTGTTGCTAAGTTAGA+TGG | - | chr8_3:61329468-61329487 | None:intergenic | 35.0% | |
| GTGGAAAACAAATCTAGTTG+TGG | - | chr8_3:61329523-61329542 | None:intergenic | 35.0% | |
| GTAACTTCTCAAGATTCTGA+AGG | - | chr8_3:61329605-61329624 | None:intergenic | 35.0% | |
| ! | TCATGACATACATTTAGGAC+AGG | + | chr8_3:61329851-61329870 | Msa1299930:three_prime_UTR | 35.0% |
| AGAGAATGCAGCTTAACAAA+GGG | + | chr8_3:61328722-61328741 | Msa1299930:five_prime_UTR | 35.0% | |
| GAGAACAAAACTCCTTTGAT+TGG | + | chr8_3:61328780-61328799 | Msa1299930:five_prime_UTR | 35.0% | |
| AGCAAATTCAACAAAACAGC+AGG | + | chr8_3:61328826-61328845 | Msa1299930:CDS | 35.0% | |
| !!! | TGTAATGTTTTAGTCGGTTG+TGG | + | chr8_3:61328922-61328941 | Msa1299930:intron | 35.0% |
| GCTTTACATCATGCTAAGAA+TGG | + | chr8_3:61329016-61329035 | Msa1299930:CDS | 35.0% | |
| GAAAATATGTTGGACCAGTT+TGG | - | chr8_3:61329174-61329193 | None:intergenic | 35.0% | |
| ! | GTCCAACATATTTTCCAGAT+TGG | + | chr8_3:61329179-61329198 | Msa1299930:CDS | 35.0% |
| AGCCAATCTGGAAAATATGT+TGG | - | chr8_3:61329184-61329203 | None:intergenic | 35.0% | |
| AACTCTGTTGCTAAGTTAGA+TGG | - | chr8_3:61329468-61329487 | None:intergenic | 35.0% | |
| GTGGAAAACAAATCTAGTTG+TGG | - | chr8_3:61329523-61329542 | None:intergenic | 35.0% | |
| GTAACTTCTCAAGATTCTGA+AGG | - | chr8_3:61329605-61329624 | None:intergenic | 35.0% | |
| ! | TCATGACATACATTTAGGAC+AGG | + | chr8_3:61329851-61329870 | Msa1299930:three_prime_UTR | 35.0% |
| CAGAGAATGCAGCTTAACAA+AGG | + | chr8_3:61328721-61328740 | Msa1299930:five_prime_UTR | 40.0% | |
| CTGACTAGTGTATATCCTGA+GGG | + | chr8_3:61328959-61328978 | Msa1299930:CDS | 40.0% | |
| AAGCATGTGGAAGCTAAGAT+TGG | + | chr8_3:61329207-61329226 | Msa1299930:CDS | 40.0% | |
| AAGGTACGCTTTCCTATTTG+AGG | - | chr8_3:61329586-61329605 | None:intergenic | 40.0% | |
| GTAAATCTATATGCGCGGTT+TGG | + | chr8_3:61329647-61329666 | Msa1299930:three_prime_UTR | 40.0% | |
| ! | GTGTGTAATGCATGCTACTT+CGG | + | chr8_3:61329748-61329767 | Msa1299930:three_prime_UTR | 40.0% |
| ! | AGATCTCTTCTAGCTAGCAA+AGG | - | chr8_3:61329893-61329912 | Msa1299940:intron | 40.0% |
| !! | TTCTCTGAGACCACTCTATT+TGG | - | chr8_3:61328708-61328727 | None:intergenic | 40.0% |
| CAGAGAATGCAGCTTAACAA+AGG | + | chr8_3:61328721-61328740 | Msa1299930:five_prime_UTR | 40.0% | |
| CTGACTAGTGTATATCCTGA+GGG | + | chr8_3:61328959-61328978 | Msa1299930:CDS | 40.0% | |
| AAGCATGTGGAAGCTAAGAT+TGG | + | chr8_3:61329207-61329226 | Msa1299930:CDS | 40.0% | |
| AAGGTACGCTTTCCTATTTG+AGG | - | chr8_3:61329586-61329605 | None:intergenic | 40.0% | |
| GTAAATCTATATGCGCGGTT+TGG | + | chr8_3:61329647-61329666 | Msa1299930:three_prime_UTR | 40.0% | |
| ! | GTGTGTAATGCATGCTACTT+CGG | + | chr8_3:61329748-61329767 | Msa1299930:three_prime_UTR | 40.0% |
| ! | AGATCTCTTCTAGCTAGCAA+AGG | - | chr8_3:61329893-61329912 | Msa1299940:intron | 40.0% |
| CCTCAGGATATACACTAGTC+AGG | - | chr8_3:61328961-61328980 | None:intergenic | 45.0% | |
| CCTGACTAGTGTATATCCTG+AGG | + | chr8_3:61328958-61328977 | Msa1299930:CDS | 45.0% | |
| !! | TGCTAAGAATGGCACTGACA+TGG | + | chr8_3:61329027-61329046 | Msa1299930:CDS | 45.0% |
| !! | ATGGCACTGACATGGTTTCT+AGG | + | chr8_3:61329035-61329054 | Msa1299930:CDS | 45.0% |
| ! | CACATTTTGCTCGACCAAAC+TGG | + | chr8_3:61329157-61329176 | Msa1299930:CDS | 45.0% |
| CCTCAGGATATACACTAGTC+AGG | - | chr8_3:61328961-61328980 | None:intergenic | 45.0% | |
| CCTGACTAGTGTATATCCTG+AGG | + | chr8_3:61328958-61328977 | Msa1299930:CDS | 45.0% | |
| !! | TGCTAAGAATGGCACTGACA+TGG | + | chr8_3:61329027-61329046 | Msa1299930:CDS | 45.0% |
| !! | ATGGCACTGACATGGTTTCT+AGG | + | chr8_3:61329035-61329054 | Msa1299930:CDS | 45.0% |
| ! | CACATTTTGCTCGACCAAAC+TGG | + | chr8_3:61329157-61329176 | Msa1299930:CDS | 45.0% |
| CGGTATTTCACGTACACCTG+AGG | + | chr8_3:61329768-61329787 | Msa1299930:three_prime_UTR | 50.0% | |
| AAAGTGTGATCTGCTGCCTC+AGG | - | chr8_3:61329787-61329806 | Msa1299940:intron | 50.0% | |
| CGGTATTTCACGTACACCTG+AGG | + | chr8_3:61329768-61329787 | Msa1299930:three_prime_UTR | 50.0% | |
| AAAGTGTGATCTGCTGCCTC+AGG | - | chr8_3:61329787-61329806 | Msa1299940:intron | 50.0% | |
| TCCTGAGGGAGACGTTCGTT+CGG | + | chr8_3:61328973-61328992 | Msa1299930:CDS | 55.0% | |
| CACATGCTTGCGAGCCAATC+TGG | - | chr8_3:61329196-61329215 | None:intergenic | 55.0% | |
| !! | CAGATTGGCTCGCAAGCATG+TGG | + | chr8_3:61329194-61329213 | Msa1299930:CDS | 55.0% |
| TCCTGAGGGAGACGTTCGTT+CGG | + | chr8_3:61328973-61328992 | Msa1299930:CDS | 55.0% | |
| CACATGCTTGCGAGCCAATC+TGG | - | chr8_3:61329196-61329215 | None:intergenic | 55.0% | |
| !! | CAGATTGGCTCGCAAGCATG+TGG | + | chr8_3:61329194-61329213 | Msa1299930:CDS | 55.0% |
| GCCGAACGAACGTCTCCCTC+AGG | - | chr8_3:61328977-61328996 | None:intergenic | 65.0% | |
| GCCGAACGAACGTCTCCCTC+AGG | - | chr8_3:61328977-61328996 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 61328708 | 61329995 | 61328708 | ID=Msa1299930;Name=Msa1299930 |
| chr8_3 | mRNA | 61328708 | 61329995 | 61328708 | ID=Msa1299930-mRNA-1;Parent=Msa1299930;Name=Msa1299930-mRNA-1;_AED=0.00;_eAED=0.00;_QI=107|1|1|1|1|1|4|438|116 |
| chr8_3 | exon | 61328708 | 61328847 | 61328708 | ID=Msa1299930-mRNA-1:exon:18030;Parent=Msa1299930-mRNA-1 |
| chr8_3 | exon | 61328935 | 61329063 | 61328935 | ID=Msa1299930-mRNA-1:exon:18031;Parent=Msa1299930-mRNA-1 |
| chr8_3 | exon | 61329150 | 61329228 | 61329150 | ID=Msa1299930-mRNA-1:exon:18032;Parent=Msa1299930-mRNA-1 |
| chr8_3 | exon | 61329448 | 61329995 | 61329448 | ID=Msa1299930-mRNA-1:exon:18033;Parent=Msa1299930-mRNA-1 |
| chr8_3 | five_prime_UTR | 61328708 | 61328814 | 61328708 | ID=Msa1299930-mRNA-1:five_prime_utr;Parent=Msa1299930-mRNA-1 |
| chr8_3 | CDS | 61328815 | 61328847 | 61328815 | ID=Msa1299930-mRNA-1:cds;Parent=Msa1299930-mRNA-1 |
| chr8_3 | CDS | 61328935 | 61329063 | 61328935 | ID=Msa1299930-mRNA-1:cds;Parent=Msa1299930-mRNA-1 |
| chr8_3 | CDS | 61329150 | 61329228 | 61329150 | ID=Msa1299930-mRNA-1:cds;Parent=Msa1299930-mRNA-1 |
| chr8_3 | CDS | 61329448 | 61329557 | 61329448 | ID=Msa1299930-mRNA-1:cds;Parent=Msa1299930-mRNA-1 |
| chr8_3 | three_prime_UTR | 61329558 | 61329995 | 61329558 | ID=Msa1299930-mRNA-1:three_prime_utr;Parent=Msa1299930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
