AlfalfaGEDB | Msa0371270

M. sativa cultivar zhongmu-4 / Msa0371270

KEGG: -
GO: -
PFAM: PF03181.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371270	XP_003601289.1	96.502	629	21	1	1	629	1	628	0.0	1235

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371270	sp\|Q40161\|GP1_SOLLC	54.139	604	258	8	36	628	34	629	0.0	639

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371270	G7J5I4	96.502	629	21	1	1	629	1	628	0.0	1235

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002580	Msa0371270	0.808971	2.383163e-50	-8.615850e-47
Msa0005890	Msa0371270	0.805239	1.469358e-49	-8.615850e-47
Msa0017670	Msa0371270	0.810217	1.286672e-50	-8.615850e-47
Msa0019900	Msa0371270	0.819309	1.243036e-52	-8.615850e-47
Msa0025160	Msa0371270	0.839749	1.315146e-57	-8.615850e-47
Msa0035340	Msa0371270	0.802959	4.378861e-49	-8.615850e-47
Msa0042640	Msa0371270	0.826231	3.038743e-54	-8.615850e-47
Msa0048510	Msa0371270	0.820126	8.086749e-53	-8.615850e-47
Msa0050660	Msa0371270	0.810822	9.523537e-51	-8.615850e-47
Msa0050700	Msa0371270	0.811542	6.644919e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371270	MtrunA17_Chr3g0117791	96.502	629	21	1	1	629	1	628	0.0	1235
Msa0371270	MtrunA17_Chr5g0413591	50.863	637	286	5	3	628	9	629	0.0	620
Msa0371270	MtrunA17_Chr8g0365401	50.478	628	295	8	10	628	6	626	0.0	601
Msa0371270	MtrunA17_Chr8g0365381	49.608	637	290	12	14	628	16	643	0.0	590
Msa0371270	MtrunA17_Chr8g0365361	61.011	277	106	1	352	628	121	395	1.68e-121	366
Msa0371270	MtrunA17_Chr4g0076231	65.823	158	53	1	472	628	2	159	4.28e-77	242
Msa0371270	MtrunA17_Chr5g0412991	50.230	217	106	2	414	629	197	412	8.83e-72	237
Msa0371270	MtrunA17_Chr5g0412991	47.568	185	95	2	426	609	1	184	1.92e-51	183
Msa0371270	MtrunA17_Chr5g0412981	50.230	217	106	2	414	629	197	412	1.02e-71	237
Msa0371270	MtrunA17_Chr5g0412981	47.027	185	96	2	426	609	1	184	3.96e-51	182

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371270	AT1G23760.1	51.905	630	292	8	1	628	1	621	0.0	631
Msa0371270	AT1G70370.2	52.070	628	287	8	7	628	6	625	0.0	629
Msa0371270	AT1G70370.1	52.070	628	287	8	7	628	6	625	0.0	629
Msa0371270	AT1G60390.1	51.613	620	289	6	10	625	8	620	0.0	585
Msa0371270	AT5G25610.1	34.921	189	119	3	439	625	203	389	1.80e-27	115
Msa0371270	AT1G49320.1	31.016	187	120	4	449	627	94	279	1.84e-20	92.4

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Find 132 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACTGAAAATGTGAA+CGG	0.637468	3_1:-69418289	Msa0371270:CDS
AAAAGAAGCGTTTCACGCGC+GGG	0.508596	3_1:-69418458	Msa0371270:CDS
AAAAGCACATAGGACATTGG+GGG	0.690062	3_1:+69420068	None:intergenic
AAAATGTGAACGGGTCAAAA+AGG	0.347765	3_1:-69418279	Msa0371270:CDS
AAACAACTGAAAATGTGAAC+GGG	0.509569	3_1:-69418288	Msa0371270:CDS
AAAGTCGATGCAACGGACGG+TGG	0.596657	3_1:-69418241	Msa0371270:CDS
AACAATTTCAGCACAATCAG+TGG	0.580141	3_1:-69418655	Msa0371270:CDS
AACACAAACTTCACAAACTA+CGG	0.525394	3_1:-69419285	Msa0371270:CDS
AACGACACTTTCACTGAATA+TGG	0.249572	3_1:-69418778	Msa0371270:CDS
AACTATGGCTCGGCTCGACT+CGG	0.548192	3_1:-69419438	Msa0371270:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGACAATAACAACTTAGTTA+AGG	+	chr3_1:69418021-69418040	None:intergenic	30.0%
TTTGTTTGAAGAGGTTTATG+AGG	+	chr3_1:69418278-69418297	None:intergenic	30.0%
TTATGGAGAATTGATGAGAA+GGG	+	chr3_1:69418303-69418322	None:intergenic	30.0%
ATTATGGAGAATTGATGAGA+AGG	+	chr3_1:69418304-69418323	None:intergenic	30.0%
TCATTCAAAAACTACTCCAA+CGG	-	chr3_1:69418477-69418496	Msa0371270:CDS	30.0%
AACACAAACTTCACAAACTA+CGG	-	chr3_1:69418597-69418616	Msa0371270:CDS	30.0%
AAGTTATCTTTCTCAAGCTA+CGG	-	chr3_1:69418723-69418742	Msa0371270:CDS	30.0%
ATTCTTCAATCAACATTCAC+CGG	-	chr3_1:69418843-69418862	Msa0371270:CDS	30.0%
AAGAGTAGTTTCAAAGCTTA+CGG	-	chr3_1:69418936-69418955	Msa0371270:CDS	30.0%
TATGGACAATCATTTAACGA+AGG	-	chr3_1:69419080-69419099	Msa0371270:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	69417759	69420145	69417759	ID=Msa0371270;Name=Msa0371270
chr3_1	mRNA	69417759	69420145	69417759	ID=Msa0371270-mRNA-1;Parent=Msa0371270;Name=Msa0371270-mRNA-1;_AED=0.00;_eAED=0.00;_QI=137\|1\|1\|1\|1\|1\|2\|208\|629
chr3_1	exon	69417759	69419808	69417759	ID=Msa0371270-mRNA-1:exon:14799;Parent=Msa0371270-mRNA-1
chr3_1	exon	69419961	69420145	69419961	ID=Msa0371270-mRNA-1:exon:14798;Parent=Msa0371270-mRNA-1
chr3_1	five_prime_UTR	69420009	69420145	69420009	ID=Msa0371270-mRNA-1:five_prime_utr;Parent=Msa0371270-mRNA-1
chr3_1	CDS	69419961	69420008	69419961	ID=Msa0371270-mRNA-1:cds;Parent=Msa0371270-mRNA-1
chr3_1	CDS	69417967	69419808	69417967	ID=Msa0371270-mRNA-1:cds;Parent=Msa0371270-mRNA-1
chr3_1	three_prime_UTR	69417759	69417966	69417759	ID=Msa0371270-mRNA-1:three_prime_utr;Parent=Msa0371270-mRNA-1

Gene Sequence

>Msa0371270

ATGAAAATTTACTTCACCTTCCTGTTCTTGTCGCTTTCTTTTTTCCATGTTTCTATAGCAACCATTGGCAAAACCCAAGAATATTCCTATTCCAAACAAAAGACAAACCCTTTCACTCCTAAAGCCTCACTCATTCGCCATTGGAACACAAAAATCTCCAACAAACTTCCAATCCCTCAATTTCTTCTATCTAAAGCTTCTCCTCTTACACCACAACACTACGCAAACCTCATAAACCTCTTCAAACAAAAACCCTTCTCATCAATTCTCCATAATACCCTCTGCTCCACACCATACTTATTCTGCTCCTTCGACCACCCAAACACACTTTACCAATCCACAAAAACCAACAAATCAGACTCAAACTTCGCCGTCTACTCAAACAAAAAATTTTCAAACTATGGCTCGGCTCGACTCGGCGGAGTTGACTCATTCAAAAACTACTCCAACGGTTTAAACACAAACAACGACTCGTTCAAAAAATACAGCTCAGGCTCAACTCGTCGCGGTGGAGAATTCAACAGCTACGCAGAAAACGGCAATGTAGCTAACACAAACTTCACAAACTACGGTTCCGGTTCAAATTCCGGCACCGGAGACTTCAAAAGCTACGATAAACTCGTTAATGTACCCAACCTCGGTTTCACCACCTACGACTCCGCCGCTAGCAACCACAAGTTATCTTTCTCAAGCTACGGTAACGATACAAATTCTGGATCTCAATCATTCAACAGCTACGGAAAACGCGTTCGTAGCGGTAGCAGCGATTTCATCAATTATGCAGTTAGTTCCAACATTCTTCAATCAACATTCACCGGTTACGGTGAATTAGGAACAGGAGGTGCAAACGATTCTTTCAAAGCGTACAGTTTCAACGGTAATAATCCAAAGAGTAGTTTCAAAGCTTACGGCACCGGTTCCGTTTCCGGTTCCGATACTTTCGTGAGTTACCGAAATCGCGCTAACGTCGGTGATGATTCGTTTCAAAGCTACGGTGCAAAATCGAAAGCCGGTGCTGCGTCATTTACGAATTATGGACAATCATTTAACGAAGGAAACGACACTTTCACTGAATATGGAAAAGGAGCTACGGGTAAAACCGCGTTTGGATTCAAATCTTATGGATTGGGACGAGCGTTTAAGGTATACAACAAAAACGGCGCGTCGTTTTCAGCGTATAACAATTTCAGCACAATCAGTGGCAAAAAAATCGTAAATAGATTTGTAGAACCAGGTAAATTTTTCAGAGAGTCGATGTTAAAAGAAGGAAATGTGATGATTATGCCAGATATTAGAGATAAAATGCCTGCAAGGTCGTTTTTACCCTTATCTCTATCATCGAAATTACCATTTTCATCCTCGAGGTTGAGTGAGATAAAAGAAGCGTTTCACGCGCGGGATGGTTCAGCGACAGAGCGCGTGATAGTTAACGCGCTTAAAGAATGCGAGAGGGAACCTAGTGTGGGAGAAACAAAACGGTGCGTTGGATCAGCTGAGGGTATGATTGACTTTTCCGTTTCTATATTAGGTCCCAACGTGGTTGTGAAAACAACTGAAAATGTGAACGGGTCAAAAAGGACGGTGATGATTGGAAAAGTCGATGCAACGGACGGTGGAAAAGTGATTAAATCAGTTTCATGTCATCAGAGTTTGTACCCTTATTTACTCTATTATTGTCACTCTGTCCCTAAAGTGAGAGTTTATGAAGCTGATATTCTTGACGTGGACTCTAAGTCAAAGATTAATCATGGTGTTGCCATCTGTCACATTGATACGTCATCGTGGGGTCCTAAACATGGTGCTTTTTTGGCGTTAGGGTCGGGACCTGGAAAAATTGAGGTGTGTCATTGGATTTTTGAGAATGATATGACGTGGACCACTTCTAGTTGA

Protein sequence

>Msa0371270

MKIYFTFLFLSLSFFHVSIATIGKTQEYSYSKQKTNPFTPKASLIRHWNTKISNKLPIPQFLLSKASPLTPQHYANLINLFKQKPFSSILHNTLCSTPYLFCSFDHPNTLYQSTKTNKSDSNFAVYSNKKFSNYGSARLGGVDSFKNYSNGLNTNNDSFKKYSSGSTRRGGEFNSYAENGNVANTNFTNYGSGSNSGTGDFKSYDKLVNVPNLGFTTYDSAASNHKLSFSSYGNDTNSGSQSFNSYGKRVRSGSSDFINYAVSSNILQSTFTGYGELGTGGANDSFKAYSFNGNNPKSSFKAYGTGSVSGSDTFVSYRNRANVGDDSFQSYGAKSKAGAASFTNYGQSFNEGNDTFTEYGKGATGKTAFGFKSYGLGRAFKVYNKNGASFSAYNNFSTISGKKIVNRFVEPGKFFRESMLKEGNVMIMPDIRDKMPARSFLPLSLSSKLPFSSSRLSEIKEAFHARDGSATERVIVNALKECEREPSVGETKRCVGSAEGMIDFSVSILGPNVVVKTTENVNGSKRTVMIGKVDATDGGKVIKSVSCHQSLYPYLLYYCHSVPKVRVYEADILDVDSKSKINHGVAICHIDTSSWGPKHGAFLALGSGPGKIEVCHWIFENDMTWTTSS*