Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081570 | sp|Q9M115|ZDH16_ARATH | 63.230 | 514 | 170 | 9 | 2 | 505 | 4 | 508 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081570 | G7IBQ1 | 98.416 | 505 | 8 | 0 | 1 | 505 | 1 | 505 | 0.0 | 1017 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0081570 | 0.817322 | 3.501257e-52 | -8.615850e-47 |
| Msa0028420 | Msa0081570 | 0.808277 | 3.352597e-50 | -8.615850e-47 |
| Msa0030370 | Msa0081570 | 0.941485 | 3.834171e-101 | -8.615850e-47 |
| Msa0048510 | Msa0081570 | 0.821325 | 4.286599e-53 | -8.615850e-47 |
| Msa0049760 | Msa0081570 | 0.806699 | 7.245737e-50 | -8.615850e-47 |
| Msa0052480 | Msa0081570 | 0.806905 | 6.554545e-50 | -8.615850e-47 |
| Msa0081520 | Msa0081570 | 0.804670 | 1.932505e-49 | -8.615850e-47 |
| Msa0081570 | Msa0090400 | 0.800883 | 1.169518e-48 | -8.615850e-47 |
| Msa0081570 | Msa0094780 | 0.841683 | 4.095922e-58 | -8.615850e-47 |
| Msa0081570 | Msa0124280 | 0.807360 | 5.251455e-50 | -8.615850e-47 |
| Msa0081570 | Msa0136650 | 0.808325 | 3.274545e-50 | -8.615850e-47 |
| Msa0081570 | Msa0173730 | 0.939092 | 2.268306e-99 | -8.615850e-47 |
| Msa0081570 | Msa0173810 | 0.942819 | 3.651065e-102 | -8.615850e-47 |
| Msa0081570 | Msa0174450 | 0.821310 | 4.321545e-53 | -8.615850e-47 |
| Msa0081570 | Msa0182190 | 0.809090 | 2.246435e-50 | -8.615850e-47 |
| Msa0081570 | Msa0182240 | 0.803575 | 3.264517e-49 | -8.615850e-47 |
| Msa0081570 | Msa0190570 | 0.833600 | 4.859377e-56 | -8.615850e-47 |
| Msa0081570 | Msa0200050 | 0.806072 | 9.824976e-50 | -8.615850e-47 |
| Msa0081570 | Msa0213030 | 0.812469 | 4.174892e-51 | -8.615850e-47 |
| Msa0081570 | Msa0223210 | 0.809194 | 2.134104e-50 | -8.615850e-47 |
| Msa0081570 | Msa0225860 | 0.848177 | 7.238100e-60 | -8.615850e-47 |
| Msa0081570 | Msa0242590 | 0.836352 | 9.838713e-57 | -8.615850e-47 |
| Msa0081570 | Msa0260510 | 0.836982 | 6.800478e-57 | -8.615850e-47 |
| Msa0081570 | Msa0267110 | 0.804840 | 1.780353e-49 | -8.615850e-47 |
| Msa0081570 | Msa0280790 | 0.820692 | 5.996598e-53 | -8.615850e-47 |
| Msa0081570 | Msa0298470 | 0.840531 | 8.220670e-58 | -8.615850e-47 |
| Msa0081570 | Msa0300270 | 0.804843 | 1.778572e-49 | -8.615850e-47 |
| Msa0081570 | Msa0300320 | 0.800839 | 1.193747e-48 | -8.615850e-47 |
| Msa0081570 | Msa0310850 | 0.800557 | 1.362713e-48 | -8.615850e-47 |
| Msa0081570 | Msa0330380 | 0.828215 | 1.017368e-54 | -8.615850e-47 |
| Msa0081570 | Msa0339650 | 0.813880 | 2.046211e-51 | -8.615850e-47 |
| Msa0081570 | Msa0340500 | 0.846624 | 1.932107e-59 | -8.615850e-47 |
| Msa0081570 | Msa0369790 | 0.809009 | 2.338109e-50 | -8.615850e-47 |
| Msa0081570 | Msa0371030 | 0.801698 | 7.963952e-49 | -8.615850e-47 |
| Msa0081570 | Msa0378720 | 0.818565 | 1.834606e-52 | -8.615850e-47 |
| Msa0081570 | Msa0380620 | 0.800182 | 1.625017e-48 | -8.615850e-47 |
| Msa0081570 | Msa0390970 | 0.804244 | 2.370398e-49 | -8.615850e-47 |
| Msa0081570 | Msa0428370 | 0.818518 | 1.880193e-52 | -8.615850e-47 |
| Msa0081570 | Msa0430260 | 0.814459 | 1.524000e-51 | -8.615850e-47 |
| Msa0081570 | Msa0430300 | 0.812182 | 4.822550e-51 | -8.615850e-47 |
| Msa0081570 | Msa0464000 | 0.805973 | 1.030418e-49 | -8.615850e-47 |
| Msa0081570 | Msa0474730 | 0.810861 | 9.337502e-51 | -8.615850e-47 |
| Msa0081570 | Msa0481890 | 0.810079 | 1.377428e-50 | -8.615850e-47 |
| Msa0081570 | Msa0483100 | 0.830068 | 3.616134e-55 | -8.615850e-47 |
| Msa0081570 | Msa0484380 | 0.815084 | 1.108269e-51 | -8.615850e-47 |
| Msa0081570 | Msa0509550 | 0.803008 | 4.278663e-49 | -8.615850e-47 |
| Msa0081570 | Msa0534720 | 0.808836 | 2.546465e-50 | -8.615850e-47 |
| Msa0081570 | Msa0567170 | 0.840865 | 6.720011e-58 | -8.615850e-47 |
| Msa0081570 | Msa0580370 | 0.852752 | 3.755476e-61 | -8.615850e-47 |
| Msa0081570 | Msa0590830 | 0.804525 | 2.071461e-49 | -8.615850e-47 |
| Msa0081570 | Msa0624900 | 0.839645 | 1.400250e-57 | -8.615850e-47 |
| Msa0081570 | Msa0626450 | 0.818940 | 1.508020e-52 | -8.615850e-47 |
| Msa0081570 | Msa0626490 | 0.816386 | 5.679140e-52 | -8.615850e-47 |
| Msa0081570 | Msa0658640 | 0.844353 | 7.966341e-59 | -8.615850e-47 |
| Msa0081570 | Msa0664600 | 0.820424 | 6.911487e-53 | -8.615850e-47 |
| Msa0081570 | Msa0666700 | 0.803315 | 3.697358e-49 | -8.615850e-47 |
| Msa0081570 | Msa0683570 | 0.802782 | 4.764949e-49 | -8.615850e-47 |
| Msa0081570 | Msa0703600 | 0.821053 | 4.953102e-53 | -8.615850e-47 |
| Msa0081570 | Msa0709200 | 0.822864 | 1.885343e-53 | -8.615850e-47 |
| Msa0081570 | Msa0709440 | 0.808359 | 3.219756e-50 | -8.615850e-47 |
| Msa0081570 | Msa0721080 | 0.806085 | 9.760385e-50 | -8.615850e-47 |
| Msa0081570 | Msa0735780 | 0.826295 | 2.933664e-54 | -8.615850e-47 |
| Msa0081570 | Msa0741220 | 0.808427 | 3.114444e-50 | -8.615850e-47 |
| Msa0081570 | Msa0761670 | 0.800397 | 1.469336e-48 | -8.615850e-47 |
| Msa0081570 | Msa0777750 | 0.802715 | 4.917608e-49 | -8.615850e-47 |
| Msa0081570 | Msa0795870 | 0.849954 | 2.320046e-60 | -8.615850e-47 |
| Msa0081570 | Msa0824450 | 0.840652 | 7.641403e-58 | -8.615850e-47 |
| Msa0081570 | Msa0830130 | 0.804505 | 2.092144e-49 | -8.615850e-47 |
| Msa0081570 | Msa0830460 | 0.812817 | 3.503184e-51 | -8.615850e-47 |
| Msa0081570 | Msa0833650 | 0.849105 | 4.004068e-60 | -8.615850e-47 |
| Msa0081570 | Msa0861510 | 0.808687 | 2.740260e-50 | -8.615850e-47 |
| Msa0081570 | Msa0861600 | 0.815920 | 7.217844e-52 | -8.615850e-47 |
| Msa0081570 | Msa0873730 | 0.817285 | 3.568983e-52 | -8.615850e-47 |
| Msa0081570 | Msa0938820 | 0.800583 | 1.346258e-48 | -8.615850e-47 |
| Msa0081570 | Msa0981320 | 0.801385 | 9.230272e-49 | -8.615850e-47 |
| Msa0081570 | Msa0997920 | 0.806713 | 7.196708e-50 | -8.615850e-47 |
| Msa0081570 | Msa1037540 | 0.805604 | 1.232281e-49 | -8.615850e-47 |
| Msa0081570 | Msa1081390 | 0.805043 | 1.615194e-49 | -8.615850e-47 |
| Msa0081570 | Msa1084530 | 0.808609 | 2.847160e-50 | -8.615850e-47 |
| Msa0081570 | Msa1125820 | 0.805841 | 1.098720e-49 | -8.615850e-47 |
| Msa0081570 | Msa1125990 | 0.808985 | 2.366222e-50 | -8.615850e-47 |
| Msa0081570 | Msa1132840 | 0.855699 | 5.294910e-62 | -8.615850e-47 |
| Msa0081570 | Msa1155170 | -0.803365 | 3.608730e-49 | -8.615850e-47 |
| Msa0081570 | Msa1171290 | 0.807512 | 4.875078e-50 | -8.615850e-47 |
| Msa0081570 | Msa1192570 | 0.838814 | 2.299271e-57 | -8.615850e-47 |
| Msa0081570 | Msa1200890 | 0.817381 | 3.395642e-52 | -8.615850e-47 |
| Msa0081570 | Msa1208950 | 0.835729 | 1.416296e-56 | -8.615850e-47 |
| Msa0081570 | Msa1215870 | 0.830518 | 2.807619e-55 | -8.615850e-47 |
| Msa0081570 | Msa1224930 | 0.800076 | 1.707926e-48 | -8.615850e-47 |
| Msa0081570 | Msa1226520 | 0.841655 | 4.165236e-58 | -8.615850e-47 |
| Msa0081570 | Msa1292590 | 0.803876 | 2.827545e-49 | -8.615850e-47 |
| Msa0081570 | Msa1307630 | 0.814835 | 1.258448e-51 | -8.615850e-47 |
| Msa0081570 | Msa1320670 | 0.827619 | 1.415457e-54 | -8.615850e-47 |
| Msa0081570 | Msa1343170 | 0.831742 | 1.404825e-55 | -8.615850e-47 |
| Msa0081570 | Msa1343180 | 0.820853 | 5.505804e-53 | -8.615850e-47 |
| Msa0081570 | Msa1359690 | 0.802899 | 4.506402e-49 | -8.615850e-47 |
| Msa0081570 | Msa1392580 | 0.808897 | 2.470886e-50 | -8.615850e-47 |
| Msa0081570 | Msa1395190 | 0.805285 | 1.436837e-49 | -8.615850e-47 |
| Msa0081570 | Msa1397400 | 0.846481 | 2.113769e-59 | -8.615850e-47 |
| Msa0081570 | Msa1420950 | 0.833124 | 6.386410e-56 | -8.615850e-47 |
| Msa0081570 | Msa1427200 | 0.813770 | 2.163678e-51 | -8.615850e-47 |
| Msa0081570 | Msa1440880 | 0.824882 | 6.343715e-54 | -8.615850e-47 |
| Msa0081570 | Msa1440960 | 0.821242 | 4.480910e-53 | -8.615850e-47 |
| Msa0081570 | Msa1446810 | 0.808370 | 3.202228e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081570 | MtrunA17_Chr1g0193941 | 98.416 | 505 | 8 | 0 | 1 | 505 | 1 | 505 | 0.0 | 1017 |
| Msa0081570 | MtrunA17_Chr3g0144181 | 34.937 | 395 | 235 | 7 | 2 | 393 | 3 | 378 | 8.17e-69 | 232 |
| Msa0081570 | MtrunA17_Chr4g0038841 | 37.346 | 324 | 175 | 5 | 1 | 298 | 2 | 323 | 2.02e-67 | 230 |
| Msa0081570 | MtrunA17_Chr4g0042821 | 27.883 | 581 | 311 | 12 | 1 | 488 | 1 | 566 | 2.13e-62 | 214 |
| Msa0081570 | MtrunA17_Chr5g0418141 | 31.368 | 475 | 246 | 13 | 1 | 421 | 1 | 449 | 4.56e-57 | 200 |
| Msa0081570 | MtrunA17_Chr6g0462021 | 27.228 | 202 | 121 | 5 | 155 | 344 | 149 | 336 | 1.91e-14 | 75.5 |
| Msa0081570 | MtrunA17_Chr4g0064931 | 40.909 | 88 | 46 | 2 | 139 | 220 | 353 | 440 | 4.19e-14 | 75.1 |
| Msa0081570 | MtrunA17_Chr7g0273371 | 28.070 | 228 | 139 | 7 | 114 | 328 | 127 | 342 | 2.57e-13 | 71.6 |
| Msa0081570 | MtrunA17_Chr6g0464751 | 30.075 | 133 | 83 | 3 | 155 | 287 | 138 | 260 | 3.52e-12 | 68.2 |
| Msa0081570 | MtrunA17_Chr1g0201631 | 30.075 | 133 | 84 | 3 | 155 | 287 | 135 | 258 | 3.69e-12 | 68.2 |
| Msa0081570 | MtrunA17_Chr4g0009911 | 26.816 | 179 | 100 | 5 | 141 | 305 | 87 | 248 | 5.55e-12 | 66.6 |
| Msa0081570 | MtrunA17_Chr3g0131931 | 28.571 | 133 | 85 | 3 | 155 | 287 | 150 | 272 | 5.63e-12 | 67.8 |
| Msa0081570 | MtrunA17_Chr4g0049351 | 39.796 | 98 | 51 | 4 | 157 | 251 | 363 | 455 | 6.45e-12 | 67.8 |
| Msa0081570 | MtrunA17_Chr7g0255151 | 27.068 | 133 | 81 | 2 | 155 | 287 | 162 | 278 | 2.00e-11 | 66.2 |
| Msa0081570 | MtrunA17_Chr7g0251761 | 29.545 | 132 | 81 | 3 | 157 | 287 | 151 | 271 | 2.63e-11 | 65.5 |
| Msa0081570 | MtrunA17_Chr1g0199411 | 33.824 | 136 | 70 | 5 | 169 | 303 | 108 | 224 | 4.46e-11 | 63.5 |
| Msa0081570 | MtrunA17_Chr5g0406311 | 42.373 | 59 | 34 | 0 | 158 | 216 | 170 | 228 | 5.65e-11 | 63.9 |
| Msa0081570 | MtrunA17_Chr1g0211241 | 45.000 | 60 | 33 | 0 | 157 | 216 | 462 | 521 | 6.90e-11 | 64.7 |
| Msa0081570 | MtrunA17_Chr7g0255161 | 27.407 | 135 | 89 | 2 | 155 | 287 | 89 | 216 | 7.22e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081570 | AT4G01730.1 | 63.230 | 514 | 170 | 9 | 2 | 505 | 4 | 508 | 0.0 | 543 |
| Msa0081570 | AT2G33640.1 | 34.750 | 400 | 209 | 9 | 2 | 370 | 3 | 381 | 3.83e-71 | 237 |
| Msa0081570 | AT3G22180.1 | 36.170 | 329 | 179 | 5 | 1 | 306 | 2 | 322 | 4.60e-65 | 224 |
| Msa0081570 | AT4G15080.2 | 31.743 | 482 | 253 | 11 | 1 | 425 | 2 | 464 | 1.78e-64 | 222 |
| Msa0081570 | AT4G15080.1 | 31.743 | 482 | 253 | 11 | 1 | 425 | 2 | 464 | 1.78e-64 | 222 |
| Msa0081570 | AT1G69420.1 | 32.075 | 424 | 232 | 11 | 1 | 385 | 1 | 407 | 1.16e-61 | 212 |
| Msa0081570 | AT1G69420.2 | 32.075 | 424 | 232 | 11 | 1 | 385 | 1 | 407 | 1.16e-61 | 212 |
| Msa0081570 | AT3G26935.1 | 32.090 | 134 | 79 | 3 | 155 | 287 | 148 | 270 | 1.54e-15 | 79.3 |
| Msa0081570 | AT3G48760.1 | 27.228 | 202 | 128 | 5 | 155 | 348 | 157 | 347 | 6.20e-15 | 77.4 |
| Msa0081570 | AT5G20350.1 | 36.154 | 130 | 74 | 4 | 92 | 221 | 316 | 436 | 1.05e-13 | 74.3 |
| Msa0081570 | AT5G41060.3 | 29.851 | 134 | 82 | 3 | 155 | 287 | 79 | 201 | 2.57e-13 | 71.6 |
| Msa0081570 | AT5G41060.4 | 29.851 | 134 | 82 | 3 | 155 | 287 | 79 | 201 | 2.57e-13 | 71.6 |
| Msa0081570 | AT3G04970.3 | 42.105 | 76 | 39 | 2 | 153 | 224 | 66 | 140 | 2.73e-13 | 71.2 |
| Msa0081570 | AT2G14255.1 | 43.836 | 73 | 41 | 0 | 148 | 220 | 355 | 427 | 2.82e-13 | 72.8 |
| Msa0081570 | AT5G41060.1 | 29.851 | 134 | 82 | 3 | 155 | 287 | 146 | 268 | 4.52e-13 | 71.6 |
| Msa0081570 | AT3G56930.1 | 28.148 | 135 | 83 | 3 | 155 | 287 | 145 | 267 | 4.77e-13 | 71.6 |
| Msa0081570 | AT4G24630.1 | 30.075 | 133 | 83 | 3 | 155 | 287 | 135 | 257 | 5.58e-13 | 71.2 |
| Msa0081570 | AT5G41060.2 | 29.851 | 134 | 82 | 3 | 155 | 287 | 131 | 253 | 5.76e-13 | 70.9 |
| Msa0081570 | AT3G04970.2 | 43.836 | 73 | 36 | 2 | 153 | 221 | 153 | 224 | 6.18e-13 | 70.1 |
| Msa0081570 | AT3G04970.1 | 42.105 | 76 | 39 | 2 | 153 | 224 | 153 | 227 | 7.68e-13 | 70.5 |
| Msa0081570 | AT5G50020.3 | 30.075 | 133 | 83 | 4 | 155 | 287 | 135 | 257 | 1.85e-12 | 69.7 |
| Msa0081570 | AT5G50020.2 | 30.075 | 133 | 83 | 4 | 155 | 287 | 165 | 287 | 2.24e-12 | 69.3 |
| Msa0081570 | AT5G04270.1 | 29.921 | 127 | 75 | 3 | 169 | 295 | 105 | 217 | 2.58e-12 | 67.8 |
| Msa0081570 | AT3G09320.1 | 29.677 | 155 | 95 | 4 | 141 | 293 | 80 | 222 | 6.76e-12 | 66.6 |
| Msa0081570 | AT4G22750.1 | 26.291 | 213 | 135 | 5 | 85 | 285 | 33 | 235 | 1.97e-11 | 65.5 |
| Msa0081570 | AT5G05070.1 | 27.820 | 133 | 82 | 3 | 155 | 287 | 170 | 288 | 6.48e-11 | 64.7 |
Find 115 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGACTTGAAAGCCTTAA+TGG | 0.179701 | 1_2:+60209581 | None:intergenic |
| CCCCTTTGATCAACACAAAA+AGG | 0.201505 | 1_2:-60209841 | Msa0081570:CDS |
| ATGTATAAATTTGATTTATA+AGG | 0.203769 | 1_2:+60209289 | None:intergenic |
| CTTAACTATGGATTCATTAT+TGG | 0.227661 | 1_2:-60211330 | Msa0081570:CDS |
| AGAGAACTACCTTTCGTATT+AGG | 0.235966 | 1_2:+60210336 | None:intergenic |
| CCTGCAGAAAATCTTCTTCT+TGG | 0.247950 | 1_2:+60209563 | None:intergenic |
| GCAATTCCTAAGCTTAACTA+TGG | 0.264138 | 1_2:-60211342 | Msa0081570:CDS |
| TTTCTTCTTCTTCTTGAAAC+TGG | 0.265760 | 1_2:+60211380 | None:intergenic |
| AATATTGGCAATGAGGGATT+TGG | 0.269143 | 1_2:-60209644 | Msa0081570:CDS |
| CATGGGGATTTATAGTTTCC+TGG | 0.270284 | 1_2:-60212541 | Msa0081570:CDS |
| AACTTCATGTATCACCATTA+AGG | 0.298327 | 1_2:-60209595 | Msa0081570:CDS |
| CTTAGGAATTGCATTCCTTT+TGG | 0.301238 | 1_2:+60211353 | None:intergenic |
| AGTGGTTGAATAACTGTATT+GGG | 0.305251 | 1_2:-60210831 | Msa0081570:CDS |
| TTGAAAATGCAACAGTTTGT+AGG | 0.323267 | 1_2:-60212564 | Msa0081570:intron |
| AATTACCATGAAGGAAAATA+TGG | 0.329971 | 1_2:+60212452 | None:intergenic |
| CTGCAATTGCGATATTTATC+AGG | 0.330793 | 1_2:-60210623 | Msa0081570:CDS |
| CAGTGGTTGAATAACTGTAT+TGG | 0.338312 | 1_2:-60210832 | Msa0081570:CDS |
| AAATACAATGCCTACGATCT+TGG | 0.340037 | 1_2:+60209380 | None:intergenic |
| ACGTCCTCTCCATCCTTTAC+AGG | 0.344474 | 1_2:-60212674 | Msa0081570:intron |
| AATACAATGCCTACGATCTT+GGG | 0.349348 | 1_2:+60209381 | None:intergenic |
| AATGAGAACTAACCATTAAC+AGG | 0.352539 | 1_2:+60210767 | None:intergenic |
| AGAGAATGAAGCCATGGAAT+TGG | 0.360067 | 1_2:-60210088 | Msa0081570:CDS |
| GCTTATAGTTCAGCTGCATT+GGG | 0.362020 | 1_2:-60210383 | Msa0081570:CDS |
| AGCTTATAGTTCAGCTGCAT+TGG | 0.379994 | 1_2:-60210384 | Msa0081570:CDS |
| AAGGGTTTGATCACCATTGC+AGG | 0.380383 | 1_2:-60210945 | Msa0081570:CDS |
| GAATAGAAAAGGAGCTTCAT+AGG | 0.409924 | 1_2:-60210581 | Msa0081570:CDS |
| TCTTTCATAACAAATGGAAA+TGG | 0.412686 | 1_2:+60211195 | None:intergenic |
| ATATTGGCAATGAGGGATTT+GGG | 0.413742 | 1_2:-60209643 | Msa0081570:CDS |
| AGCTTGAAACACATATTTCC+AGG | 0.415244 | 1_2:-60209448 | Msa0081570:CDS |
| TCATCATCTTTCATAACAAA+TGG | 0.417582 | 1_2:+60211189 | None:intergenic |
| TCAGGTGCTTTGTGGATAAG+AGG | 0.417899 | 1_2:-60210605 | Msa0081570:CDS |
| AAGGTTGAGTTTACCTGTAA+AGG | 0.433753 | 1_2:+60212661 | None:intergenic |
| AATGAACTGTGCTCCCTCAT+TGG | 0.434720 | 1_2:+60209719 | None:intergenic |
| ATGTCGTCCTCTTTAAGATC+AGG | 0.449853 | 1_2:+60211153 | None:intergenic |
| GTGTGTTTCTATACTTTCCT+CGG | 0.453785 | 1_2:-60212516 | Msa0081570:CDS |
| GAGGACCTATGACTATATTC+TGG | 0.454122 | 1_2:-60210121 | Msa0081570:CDS |
| CTTTCATAACAAATGGAAAT+GGG | 0.456489 | 1_2:+60211196 | None:intergenic |
| TCAGATGACTATTACACATA+TGG | 0.457257 | 1_2:+60210521 | None:intergenic |
| ATGAATCCATAGTTAAGCTT+AGG | 0.465933 | 1_2:+60211336 | None:intergenic |
| TTGAAACTGGTTCTGTCTGT+AGG | 0.467295 | 1_2:+60211393 | None:intergenic |
| TGTTCAGTTATCAGCAAAGA+TGG | 0.472599 | 1_2:-60209416 | Msa0081570:CDS |
| GATATTTATCAGGTGCTTTG+TGG | 0.473980 | 1_2:-60210613 | Msa0081570:CDS |
| TTTCTGTTTACTTTAAACAT+AGG | 0.477009 | 1_2:-60209238 | Msa0081570:three_prime_UTR |
| TTATAAATCAAATTTATACA+TGG | 0.477535 | 1_2:-60209287 | Msa0081570:three_prime_UTR |
| TTCATTAAGACCTCTTCCAT+TGG | 0.478810 | 1_2:-60209702 | Msa0081570:CDS |
| TGAAGTTAGCAGGTGTGTCT+AGG | 0.480378 | 1_2:-60209472 | Msa0081570:CDS |
| ATAGGATAATTCCAGCCAAA+TGG | 0.480414 | 1_2:-60209220 | Msa0081570:three_prime_UTR |
| AAAATCCTTGACATTAGTGT+TGG | 0.485995 | 1_2:+60210003 | None:intergenic |
| AACTGAACATAGAACCTGCC+TGG | 0.487655 | 1_2:+60209430 | None:intergenic |
| CACTCGTCTTCAACGGATCA+AGG | 0.488073 | 1_2:+60211238 | None:intergenic |
| TTCACGTAAGCATTAACCCT+TGG | 0.489341 | 1_2:-60209817 | Msa0081570:CDS |
| ACTTGTAATCGTTGCGTTGA+AGG | 0.491089 | 1_2:-60210964 | Msa0081570:CDS |
| ATGCAACAGTTTGTAGGCAT+GGG | 0.494330 | 1_2:-60212558 | Msa0081570:intron |
| TGTGAACAGCTCATCATTGA+AGG | 0.494729 | 1_2:-60210651 | Msa0081570:intron |
| GGGTGGAAAAGAAGTTGCTT+AGG | 0.494730 | 1_2:-60211281 | Msa0081570:CDS |
| CATTGCCAGAATATAGTCAT+AGG | 0.496409 | 1_2:+60210116 | None:intergenic |
| GGATAAGAGGGGAATAGAAA+AGG | 0.502714 | 1_2:-60210592 | Msa0081570:CDS |
| GTCAACTTTACGAGTTTCCA+AGG | 0.513589 | 1_2:+60209800 | None:intergenic |
| GCTCTTTCTCGTCAACTCAA+CGG | 0.513844 | 1_2:+60212770 | None:intergenic |
| AATGCAACAGTTTGTAGGCA+TGG | 0.515209 | 1_2:-60212559 | Msa0081570:intron |
| TTTGTTTCATAAAGGGGATG+AGG | 0.518890 | 1_2:-60210140 | Msa0081570:intron |
| CTTGTAATCGTTGCGTTGAA+GGG | 0.519111 | 1_2:-60210963 | Msa0081570:CDS |
| ATGGTGGCAAGAAGTCCTCT+TGG | 0.521474 | 1_2:+60210540 | None:intergenic |
| CAGGTGCTTTGTGGATAAGA+GGG | 0.525174 | 1_2:-60210604 | Msa0081570:CDS |
| ACTTTCCTCGGACTCTTCCT+CGG | 0.525401 | 1_2:-60212504 | Msa0081570:CDS |
| TGAAACACATATTTCCAGGC+AGG | 0.526662 | 1_2:-60209444 | Msa0081570:CDS |
| ACGCGGACCATTGACGAATG+TGG | 0.527722 | 1_2:-60209672 | Msa0081570:CDS |
| TGAGTGTTATCTCAGCAGTT+CGG | 0.530480 | 1_2:+60212478 | None:intergenic |
| TACTTGCAGCTGAGAAAGCA+AGG | 0.530537 | 1_2:-60209763 | Msa0081570:CDS |
| GAAGTTAGCAGGTGTGTCTA+GGG | 0.530558 | 1_2:-60209471 | Msa0081570:CDS |
| TATAAATCAAATTTATACAT+GGG | 0.533955 | 1_2:-60209286 | Msa0081570:three_prime_UTR |
| ACTTGTGCACTCGTCTTCAA+CGG | 0.546561 | 1_2:+60211231 | None:intergenic |
| ACAAATGGAAATGGGAGAAG+AGG | 0.548200 | 1_2:+60211204 | None:intergenic |
| ACACTATGAGACGCCATGGT+TGG | 0.551650 | 1_2:-60212699 | Msa0081570:exon |
| CAATGCTGTCATCTGATGAA+AGG | 0.552272 | 1_2:+60210046 | None:intergenic |
| GTTGAAGACGAGTGCACAAG+TGG | 0.554243 | 1_2:-60211229 | Msa0081570:CDS |
| TTGAGTTTACCTGTAAAGGA+TGG | 0.556488 | 1_2:+60212665 | None:intergenic |
| ATCAAATGACTCCAATTCCA+TGG | 0.560589 | 1_2:+60210077 | None:intergenic |
| CAGCTGAGAAAGCAAGGGAA+AGG | 0.566987 | 1_2:-60209757 | Msa0081570:CDS |
| GAATAGATAAATTACCATGA+AGG | 0.567650 | 1_2:+60212443 | None:intergenic |
| GGAGAGGACGTTGCCAACCA+TGG | 0.577522 | 1_2:+60212686 | None:intergenic |
| GAGAGAAGAGAATGAAGCCA+TGG | 0.580808 | 1_2:-60210094 | Msa0081570:CDS |
| TGTCGTCCCTGATCTTAAAG+AGG | 0.582192 | 1_2:-60211160 | Msa0081570:CDS |
| TTTGTGTTGATCAAAGGGGA+AGG | 0.592051 | 1_2:+60209845 | None:intergenic |
| CGTGCGAGAAAGACCAATGA+GGG | 0.592418 | 1_2:-60209732 | Msa0081570:CDS |
| AAAAGCCAACACTAATGTCA+AGG | 0.594065 | 1_2:-60210008 | Msa0081570:CDS |
| TCACGTTCTCCTAATACGAA+AGG | 0.596273 | 1_2:-60210345 | Msa0081570:intron |
| AAGTATAGAAACACACCACC+AGG | 0.598487 | 1_2:+60212523 | None:intergenic |
| AACAGATACTGACCCTGCAA+TGG | 0.599614 | 1_2:+60210932 | None:intergenic |
| AGGGTTTGATCACCATTGCA+GGG | 0.600426 | 1_2:-60210944 | Msa0081570:intron |
| ATACAATGCCTACGATCTTG+GGG | 0.601194 | 1_2:+60209382 | None:intergenic |
| TGTCGTCCTCTTTAAGATCA+GGG | 0.605943 | 1_2:+60211154 | None:intergenic |
| AATGCCTACGATCTTGGGGA+TGG | 0.606261 | 1_2:+60209386 | None:intergenic |
| TGCAACAGTTTGTAGGCATG+GGG | 0.608676 | 1_2:-60212557 | Msa0081570:intron |
| ATTCATTATTGGTCAGATTG+TGG | 0.609221 | 1_2:-60211319 | Msa0081570:CDS |
| TTATTGGTCAGATTGTGGTG+AGG | 0.621959 | 1_2:-60211314 | Msa0081570:CDS |
| GAACAGCTCATCATTGAAGG+AGG | 0.626679 | 1_2:-60210648 | Msa0081570:intron |
| AACAGCTCATCATTGAAGGA+GGG | 0.627474 | 1_2:-60210647 | Msa0081570:intron |
| GATGACTATTACACATATGG+TGG | 0.631412 | 1_2:+60210524 | None:intergenic |
| TGAACCATCCCCAAGATCGT+AGG | 0.633327 | 1_2:-60209390 | Msa0081570:exon |
| TCTCAGCAGTTCGGTTTCCG+AGG | 0.633761 | 1_2:+60212487 | None:intergenic |
| CTTATAGTTCAGCTGCATTG+GGG | 0.635397 | 1_2:-60210382 | Msa0081570:CDS |
| ACTTGCAGCTGAGAAAGCAA+GGG | 0.638549 | 1_2:-60209762 | Msa0081570:CDS |
| ATACACACTATGAGACGCCA+TGG | 0.640263 | 1_2:-60212703 | Msa0081570:exon |
| ATAAGGAAACTATGATACAA+TGG | 0.642983 | 1_2:+60209306 | None:intergenic |
| TCAACTTTACGAGTTTCCAA+GGG | 0.643170 | 1_2:+60209801 | None:intergenic |
| GGGGATTTATAGTTTCCTGG+TGG | 0.645721 | 1_2:-60212538 | Msa0081570:CDS |
| TACCATGAAGGAAAATATGG+AGG | 0.648021 | 1_2:+60212455 | None:intergenic |
| TTTACCTGTAAAGGATGGAG+AGG | 0.650245 | 1_2:+60212670 | None:intergenic |
| GGTTTCCGAGGAAGAGTCCG+AGG | 0.657144 | 1_2:+60212499 | None:intergenic |
| TCGTGCGAGAAAGACCAATG+AGG | 0.674025 | 1_2:-60209733 | Msa0081570:CDS |
| TCAATCTTGATAGACAACCT+AGG | 0.679060 | 1_2:+60209881 | None:intergenic |
| AGGTGCTTTGTGGATAAGAG+GGG | 0.684044 | 1_2:-60210603 | Msa0081570:CDS |
| CTTCCATTGGAGACAAAACG+CGG | 0.706884 | 1_2:-60209689 | Msa0081570:CDS |
| ATGCTGCTAGAGAATACCGA+TGG | 0.739752 | 1_2:+60209536 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTGATATTTTTTAATTTA+AGG | - | chr1_2:60210406-60210425 | Msa0081570:CDS | 10.0% |
| !!! | ATGTATAAATTTGATTTATA+AGG | + | chr1_2:60212734-60212753 | None:intergenic | 10.0% |
| !! | TTATAAATCAAATTTATACA+TGG | - | chr1_2:60212733-60212752 | Msa0081570:five_prime_UTR | 10.0% |
| !! | TATAAATCAAATTTATACAT+GGG | - | chr1_2:60212734-60212753 | Msa0081570:five_prime_UTR | 10.0% |
| !! | AACTAAAATGAAAAATAGAA+AGG | + | chr1_2:60209381-60209400 | None:intergenic | 15.0% |
| !! | AATCTCATGTTTAATAAATA+TGG | + | chr1_2:60209645-60209664 | None:intergenic | 15.0% |
| !!! | GGAATTATTTATTTTTGAAT+TGG | - | chr1_2:60209673-60209692 | Msa0081570:CDS | 15.0% |
| !! | AAGATAATTTAAGCAAAAAA+GGG | + | chr1_2:60210187-60210206 | None:intergenic | 15.0% |
| !!! | TTTTTTGCTTAAATTATCTT+CGG | - | chr1_2:60210187-60210206 | Msa0081570:intron | 15.0% |
| !!! | TTACTAAAGAAATATTTTGA+TGG | + | chr1_2:60210285-60210304 | None:intergenic | 15.0% |
| !!! | CCATTTTTTAAACTTTATAA+AGG | + | chr1_2:60210379-60210398 | None:intergenic | 15.0% |
| !! | CCTTTATAAAGTTTAAAAAA+TGG | - | chr1_2:60210376-60210395 | Msa0081570:CDS | 15.0% |
| !! | AATGAATTCAATTTAGGTAA+CGG | - | chr1_2:60209817-60209836 | Msa0081570:CDS | 20.0% |
| !! | AGATAATTTAAGCAAAAAAG+GGG | + | chr1_2:60210186-60210205 | None:intergenic | 20.0% |
| !! | GAAGATAATTTAAGCAAAAA+AGG | + | chr1_2:60210188-60210207 | None:intergenic | 20.0% |
| !! | AAAATGCTTATTTACTAGTT+TGG | + | chr1_2:60210238-60210257 | None:intergenic | 20.0% |
| !! | GTCAATATTATATCGTTTAT+CGG | + | chr1_2:60210319-60210338 | None:intergenic | 20.0% |
| !!! | TATTGACTTAAATAGTCTTT+CGG | - | chr1_2:60210332-60210351 | Msa0081570:intron | 20.0% |
| !!! | TTTTTTTTTAATCTTAAGCG+TGG | - | chr1_2:60210959-60210978 | Msa0081570:CDS | 20.0% |
| !! | CAGAATTAATGTTAAATAGA+AGG | + | chr1_2:60211566-60211585 | None:intergenic | 20.0% |
| !!! | TTGTTTGATTTGTTTCATAA+AGG | - | chr1_2:60211872-60211891 | Msa0081570:intron | 20.0% |
| !!! | TGTTTGATTTGTTTCATAAA+GGG | - | chr1_2:60211873-60211892 | Msa0081570:intron | 20.0% |
| !! | TTTCTGTTTACTTTAAACAT+AGG | - | chr1_2:60212782-60212801 | Msa0081570:five_prime_UTR | 20.0% |
| !!! | TGAAATGTGTTATCGTTTTT+TGG | + | chr1_2:60209292-60209311 | None:intergenic | 25.0% |
| ! | AATTACCATGAAGGAAAATA+TGG | + | chr1_2:60209571-60209590 | None:intergenic | 25.0% |
| ! | GAATAGATAAATTACCATGA+AGG | + | chr1_2:60209580-60209599 | None:intergenic | 25.0% |
| ! | GCAATGAATGAATTCAATTT+AGG | - | chr1_2:60209811-60209830 | Msa0081570:CDS | 25.0% |
| ! | AAGTAACATTAATGCTTCAT+TGG | - | chr1_2:60209955-60209974 | Msa0081570:intron | 25.0% |
| !!! | CTAAAGAAATATTTTGATGG+AGG | + | chr1_2:60210282-60210301 | None:intergenic | 25.0% |
| !!! | ATAATTTTGTTGTTTTGCAC+AGG | - | chr1_2:60210560-60210579 | Msa0081570:CDS | 25.0% |
| ! | CTTAACTATGGATTCATTAT+TGG | - | chr1_2:60210690-60210709 | Msa0081570:intron | 25.0% |
| ! | CTTTCATAACAAATGGAAAT+GGG | + | chr1_2:60210827-60210846 | None:intergenic | 25.0% |
| ! | TCTTTCATAACAAATGGAAA+TGG | + | chr1_2:60210828-60210847 | None:intergenic | 25.0% |
| ! | TCATCATCTTTCATAACAAA+TGG | + | chr1_2:60210834-60210853 | None:intergenic | 25.0% |
| !!! | GTTTGATTTGTTTCATAAAG+GGG | - | chr1_2:60211874-60211893 | Msa0081570:intron | 25.0% |
| ! | ACGAATGTGGAAAAAAATAT+TGG | - | chr1_2:60212361-60212380 | Msa0081570:intron | 25.0% |
| ! | GAAAAAAATATTGGCAATGA+GGG | - | chr1_2:60212370-60212389 | Msa0081570:intron | 25.0% |
| ! | ATAAGGAAACTATGATACAA+TGG | + | chr1_2:60212717-60212736 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTCGTCCTCGT+CGG | - | chr1_2:60209423-60209442 | Msa0081570:CDS | 30.0% |
| TTGAAAATGCAACAGTTTGT+AGG | - | chr1_2:60209456-60209475 | Msa0081570:CDS | 30.0% | |
| TAAACATGAGATTAAGCACA+AGG | - | chr1_2:60209652-60209671 | Msa0081570:CDS | 30.0% | |
| ! | TGGTTTGAGTCAATTTTCAT+AGG | + | chr1_2:60209772-60209791 | None:intergenic | 30.0% |
| ATTGAATTCATTCATTGCAC+TGG | + | chr1_2:60209809-60209828 | None:intergenic | 30.0% | |
| !! | AATTTAGGTAACGGAAATGA+GGG | - | chr1_2:60209826-60209845 | Msa0081570:CDS | 30.0% |
| TTGAAACGCGACATATAATT+TGG | - | chr1_2:60209980-60209999 | Msa0081570:intron | 30.0% | |
| TGAAACGCGACATATAATTT+GGG | - | chr1_2:60209981-60210000 | Msa0081570:intron | 30.0% | |
| ! | TTCCAAAGCGACATATATTT+TGG | - | chr1_2:60210016-60210035 | Msa0081570:CDS | 30.0% |
| ! | TCCAAAGCGACATATATTTT+GGG | - | chr1_2:60210017-60210036 | Msa0081570:CDS | 30.0% |
| ! | ATCAACTGTTTTCAGTTTCA+AGG | - | chr1_2:60210136-60210155 | Msa0081570:intron | 30.0% |
| TTGCTTAAATTATCTTCGGT+CGG | - | chr1_2:60210191-60210210 | Msa0081570:intron | 30.0% | |
| !!! | TTTGGAGGCTTTTTCAAAAT+AGG | + | chr1_2:60210220-60210239 | None:intergenic | 30.0% |
| ! | ATGCTTATTTACTAGTTTGG+AGG | + | chr1_2:60210235-60210254 | None:intergenic | 30.0% |
| GACTGAATTGATATTTCTCA+AGG | - | chr1_2:60210429-60210448 | Msa0081570:intron | 30.0% | |
| AATTGTTATCAATGTGTGTC+TGG | - | chr1_2:60210502-60210521 | Msa0081570:intron | 30.0% | |
| !! | CAGTTATGTTTTTGTTTGTG+AGG | - | chr1_2:60210589-60210608 | Msa0081570:CDS | 30.0% |
| TTTCTTCTTCTTCTTGAAAC+TGG | + | chr1_2:60210643-60210662 | None:intergenic | 30.0% | |
| AGAAGAAGAAAAAAGCCAAA+AGG | - | chr1_2:60210652-60210671 | Msa0081570:intron | 30.0% | |
| ATGAATCCATAGTTAAGCTT+AGG | + | chr1_2:60210687-60210706 | None:intergenic | 30.0% | |
| ATTCATTATTGGTCAGATTG+TGG | - | chr1_2:60210701-60210720 | Msa0081570:intron | 30.0% | |
| ACTCTGTTTATATGTGAATC+AGG | - | chr1_2:60211007-60211026 | Msa0081570:intron | 30.0% | |
| !!! | TTTTCTTCTCTTGTTTTCAG+TGG | - | chr1_2:60211171-60211190 | Msa0081570:CDS | 30.0% |
| AGTGGTTGAATAACTGTATT+GGG | - | chr1_2:60211189-60211208 | Msa0081570:CDS | 30.0% | |
| AATGAGAACTAACCATTAAC+AGG | + | chr1_2:60211256-60211275 | None:intergenic | 30.0% | |
| TCAGATGACTATTACACATA+TGG | + | chr1_2:60211502-60211521 | None:intergenic | 30.0% | |
| ATAGTCATCTGAATTGTTTC+TGG | - | chr1_2:60211510-60211529 | Msa0081570:intron | 30.0% | |
| ! | TAGTCATCTGAATTGTTTCT+GGG | - | chr1_2:60211511-60211530 | Msa0081570:intron | 30.0% |
| ATAGAAGGTTCAAAAGTCAA+GGG | + | chr1_2:60211551-60211570 | None:intergenic | 30.0% | |
| AATAGAAGGTTCAAAAGTCA+AGG | + | chr1_2:60211552-60211571 | None:intergenic | 30.0% | |
| AAAATCCTTGACATTAGTGT+TGG | + | chr1_2:60212020-60212039 | None:intergenic | 30.0% | |
| ! | ATGTCAAGGATTTTATGCAA+AGG | - | chr1_2:60212026-60212045 | Msa0081570:intron | 30.0% |
| !! | ACCTTTTTGTGTTGATCAAA+GGG | + | chr1_2:60212183-60212202 | None:intergenic | 30.0% |
| !! | AACCTTTTTGTGTTGATCAA+AGG | + | chr1_2:60212184-60212203 | None:intergenic | 30.0% |
| !!! | TTTTTTTCCACATTCGTCAA+TGG | + | chr1_2:60212358-60212377 | None:intergenic | 30.0% |
| GGAAAAAAATATTGGCAATG+AGG | - | chr1_2:60212369-60212388 | Msa0081570:intron | 30.0% | |
| ! | TCAACACCTTTTATAGCAAA+AGG | - | chr1_2:60212400-60212419 | Msa0081570:intron | 30.0% |
| ! | CAACACCTTTTATAGCAAAA+GGG | - | chr1_2:60212401-60212420 | Msa0081570:intron | 30.0% |
| ! | AACACCTTTTATAGCAAAAG+GGG | - | chr1_2:60212402-60212421 | Msa0081570:intron | 30.0% |
| AACTTCATGTATCACCATTA+AGG | - | chr1_2:60212425-60212444 | Msa0081570:intron | 30.0% | |
| !!! | CTGCTTCTATATTTGTTTTG+TGG | + | chr1_2:60212520-60212539 | None:intergenic | 30.0% |
| TTGAGTTTACCTGTAAAGGA+TGG | + | chr1_2:60209358-60209377 | None:intergenic | 35.0% | |
| AAGGTTGAGTTTACCTGTAA+AGG | + | chr1_2:60209362-60209381 | None:intergenic | 35.0% | |
| ! | GTGTGTTTCTATACTTTCCT+CGG | - | chr1_2:60209504-60209523 | Msa0081570:CDS | 35.0% |
| TACCATGAAGGAAAATATGG+AGG | + | chr1_2:60209568-60209587 | None:intergenic | 35.0% | |
| AAACACAGTGTACCTTTGAT+CGG | + | chr1_2:60209736-60209755 | None:intergenic | 35.0% | |
| CACTGGATTGTACTTTGAAT+TGG | + | chr1_2:60209792-60209811 | None:intergenic | 35.0% | |
| !! | CAATTTAGGTAACGGAAATG+AGG | - | chr1_2:60209825-60209844 | Msa0081570:CDS | 35.0% |
| !! | ATTTAGGTAACGGAAATGAG+GGG | - | chr1_2:60209827-60209846 | Msa0081570:CDS | 35.0% |
| ! | TCCCAAAATATATGTCGCTT+TGG | + | chr1_2:60210021-60210040 | None:intergenic | 35.0% |
| !! | AAGCGACATATATTTTGGGA+CGG | - | chr1_2:60210021-60210040 | Msa0081570:CDS | 35.0% |
| !! | AGTTGTTATGCTGGTTTAGA+GGG | + | chr1_2:60210090-60210109 | None:intergenic | 35.0% |
| !! | AAGTTGTTATGCTGGTTTAG+AGG | + | chr1_2:60210091-60210110 | None:intergenic | 35.0% |
| ! | AGCATCTTAAGTTGTTATGC+TGG | + | chr1_2:60210099-60210118 | None:intergenic | 35.0% |
| ! | GAAACTGAAAACAGTTGATG+CGG | + | chr1_2:60210135-60210154 | None:intergenic | 35.0% |
| GTAAATTCGAACTCTTCTTC+TGG | + | chr1_2:60210164-60210183 | None:intergenic | 35.0% | |
| GGAGGAACTAAATTGATTAC+AGG | + | chr1_2:60210264-60210283 | None:intergenic | 35.0% | |
| TATACTATCAAGCACACACT+CGG | + | chr1_2:60210531-60210550 | None:intergenic | 35.0% | |
| !! | GTTTTTGTTTGTGAGGTGTA+CGG | - | chr1_2:60210596-60210615 | Msa0081570:CDS | 35.0% |
| ! | CTTAGGAATTGCATTCCTTT+TGG | + | chr1_2:60210670-60210689 | None:intergenic | 35.0% |
| GCAATTCCTAAGCTTAACTA+TGG | - | chr1_2:60210678-60210697 | Msa0081570:intron | 35.0% | |
| ! | TTGCACACTTTGTGATTTTG+AGG | - | chr1_2:60210896-60210915 | Msa0081570:intron | 35.0% |
| ! | ATCTGTTACTGTTAGGCTTT+TGG | - | chr1_2:60211104-60211123 | Msa0081570:intron | 35.0% |
| CAGTGGTTGAATAACTGTAT+TGG | - | chr1_2:60211188-60211207 | Msa0081570:CDS | 35.0% | |
| ! | GATGATTTTCGTCCTGTTAA+TGG | - | chr1_2:60211241-60211260 | Msa0081570:CDS | 35.0% |
| CTGCAATTGCGATATTTATC+AGG | - | chr1_2:60211397-60211416 | Msa0081570:CDS | 35.0% | |
| GATATTTATCAGGTGCTTTG+TGG | - | chr1_2:60211407-60211426 | Msa0081570:CDS | 35.0% | |
| GAATAGAAAAGGAGCTTCAT+AGG | - | chr1_2:60211439-60211458 | Msa0081570:CDS | 35.0% | |
| ! | CTTTTTGTAGAGTTTCCAAG+AGG | - | chr1_2:60211465-60211484 | Msa0081570:intron | 35.0% |
| GATGACTATTACACATATGG+TGG | + | chr1_2:60211499-60211518 | None:intergenic | 35.0% | |
| AGAGAACTACCTTTCGTATT+AGG | + | chr1_2:60211687-60211706 | None:intergenic | 35.0% | |
| AGAACTGCACAGAAAATCAA+AGG | + | chr1_2:60211835-60211854 | None:intergenic | 35.0% | |
| TTTGTTTCATAAAGGGGATG+AGG | - | chr1_2:60211880-60211899 | Msa0081570:intron | 35.0% | |
| CATTGCCAGAATATAGTCAT+AGG | + | chr1_2:60211907-60211926 | None:intergenic | 35.0% | |
| ATCAAATGACTCCAATTCCA+TGG | + | chr1_2:60211946-60211965 | None:intergenic | 35.0% | |
| AAAAGCCAACACTAATGTCA+AGG | - | chr1_2:60212012-60212031 | Msa0081570:intron | 35.0% | |
| ! | AAGGATTTTATGCAAAGGAC+AGG | - | chr1_2:60212031-60212050 | Msa0081570:intron | 35.0% |
| ! | TAAGGTTTGAGACAGAATGA+AGG | + | chr1_2:60212087-60212106 | None:intergenic | 35.0% |
| TCAAAACAAGCTTCTCTGTA+AGG | + | chr1_2:60212105-60212124 | None:intergenic | 35.0% | |
| TCAATCTTGATAGACAACCT+AGG | + | chr1_2:60212142-60212161 | None:intergenic | 35.0% | |
| !! | CCTTTTTGTGTTGATCAAAG+GGG | + | chr1_2:60212182-60212201 | None:intergenic | 35.0% |
| TCAACTTTACGAGTTTCCAA+GGG | + | chr1_2:60212222-60212241 | None:intergenic | 35.0% | |
| TTCATTAAGACCTCTTCCAT+TGG | - | chr1_2:60212318-60212337 | Msa0081570:intron | 35.0% | |
| AATATTGGCAATGAGGGATT+TGG | - | chr1_2:60212376-60212395 | Msa0081570:intron | 35.0% | |
| ATATTGGCAATGAGGGATTT+GGG | - | chr1_2:60212377-60212396 | Msa0081570:intron | 35.0% | |
| !! | AGTTCCCCTTTTGCTATAAA+AGG | + | chr1_2:60212409-60212428 | None:intergenic | 35.0% |
| !!! | AGTTTTGACTTGAAGTTAGC+AGG | - | chr1_2:60212538-60212557 | Msa0081570:CDS | 35.0% |
| AGCTTGAAACACATATTTCC+AGG | - | chr1_2:60212572-60212591 | Msa0081570:intron | 35.0% | |
| TGTTCAGTTATCAGCAAAGA+TGG | - | chr1_2:60212604-60212623 | Msa0081570:intron | 35.0% | |
| AATACAATGCCTACGATCTT+GGG | + | chr1_2:60212642-60212661 | None:intergenic | 35.0% | |
| AAATACAATGCCTACGATCT+TGG | + | chr1_2:60212643-60212662 | None:intergenic | 35.0% | |
| ATAGGATAATTCCAGCCAAA+TGG | - | chr1_2:60212800-60212819 | Msa0081570:five_prime_UTR | 35.0% | |
| TTTACCTGTAAAGGATGGAG+AGG | + | chr1_2:60209353-60209372 | None:intergenic | 40.0% | |
| AATGCAACAGTTTGTAGGCA+TGG | - | chr1_2:60209461-60209480 | Msa0081570:CDS | 40.0% | |
| ATGCAACAGTTTGTAGGCAT+GGG | - | chr1_2:60209462-60209481 | Msa0081570:CDS | 40.0% | |
| CATGGGGATTTATAGTTTCC+TGG | - | chr1_2:60209479-60209498 | Msa0081570:CDS | 40.0% | |
| AAGTATAGAAACACACCACC+AGG | + | chr1_2:60209500-60209519 | None:intergenic | 40.0% | |
| TGAGTGTTATCTCAGCAGTT+CGG | + | chr1_2:60209545-60209564 | None:intergenic | 40.0% | |
| ! | CACCTCCATATTTTCCTTCA+TGG | - | chr1_2:60209563-60209582 | Msa0081570:CDS | 40.0% |
| ATCTGTGCTAAACCGATCAA+AGG | - | chr1_2:60209721-60209740 | Msa0081570:CDS | 40.0% | |
| ! | GATCAAAGGTACACTGTGTT+TGG | - | chr1_2:60209735-60209754 | Msa0081570:CDS | 40.0% |
| !! | TTTAGGTAACGGAAATGAGG+GGG | - | chr1_2:60209828-60209847 | Msa0081570:CDS | 40.0% |
| !! | AAAGGAGCATTTCTGAGATG+GGG | + | chr1_2:60209895-60209914 | None:intergenic | 40.0% |
| !! | GAAAGGAGCATTTCTGAGAT+GGG | + | chr1_2:60209896-60209915 | None:intergenic | 40.0% |
| ATGTTACAGCACCAATAGCA+GGG | + | chr1_2:60209918-60209937 | None:intergenic | 40.0% | |
| AATGTTACAGCACCAATAGC+AGG | + | chr1_2:60209919-60209938 | None:intergenic | 40.0% | |
| !!! | GACATATATTTTGGGACGGA+GGG | - | chr1_2:60210025-60210044 | Msa0081570:CDS | 40.0% |
| !! | GTTGTTATGCTGGTTTAGAG+GGG | + | chr1_2:60210089-60210108 | None:intergenic | 40.0% |
| !! | TTGAAACTGGTTCTGTCTGT+AGG | + | chr1_2:60210630-60210649 | None:intergenic | 40.0% |
| TTATTGGTCAGATTGTGGTG+AGG | - | chr1_2:60210706-60210725 | Msa0081570:intron | 40.0% | |
| ! | AGATTGTGGTGAGGTTTTTC+AGG | - | chr1_2:60210715-60210734 | Msa0081570:intron | 40.0% |
| ACAAATGGAAATGGGAGAAG+AGG | + | chr1_2:60210819-60210838 | None:intergenic | 40.0% | |
| !! | TGTCGTCCTCTTTAAGATCA+GGG | + | chr1_2:60210869-60210888 | None:intergenic | 40.0% |
| !! | ATGTCGTCCTCTTTAAGATC+AGG | + | chr1_2:60210870-60210889 | None:intergenic | 40.0% |
| ACTTGTAATCGTTGCGTTGA+AGG | - | chr1_2:60211056-60211075 | Msa0081570:intron | 40.0% | |
| CTTGTAATCGTTGCGTTGAA+GGG | - | chr1_2:60211057-60211076 | Msa0081570:intron | 40.0% | |
| GGTCAGTATCTGTTACTGTT+AGG | - | chr1_2:60211097-60211116 | Msa0081570:intron | 40.0% | |
| !! | ACATGGTGTTGGAAACGTTT+TGG | + | chr1_2:60211345-60211364 | None:intergenic | 40.0% |
| GTTCACATAACACATGGTGT+TGG | + | chr1_2:60211356-60211375 | None:intergenic | 40.0% | |
| TGAGCTGTTCACATAACACA+TGG | + | chr1_2:60211362-60211381 | None:intergenic | 40.0% | |
| TGTGAACAGCTCATCATTGA+AGG | - | chr1_2:60211369-60211388 | Msa0081570:CDS | 40.0% | |
| AACAGCTCATCATTGAAGGA+GGG | - | chr1_2:60211373-60211392 | Msa0081570:CDS | 40.0% | |
| GGATAAGAGGGGAATAGAAA+AGG | - | chr1_2:60211428-60211447 | Msa0081570:CDS | 40.0% | |
| TGAACTTCATGAAATGCTGC+AGG | - | chr1_2:60211594-60211613 | Msa0081570:intron | 40.0% | |
| AGCTTATAGTTCAGCTGCAT+TGG | - | chr1_2:60211636-60211655 | Msa0081570:intron | 40.0% | |
| GCTTATAGTTCAGCTGCATT+GGG | - | chr1_2:60211637-60211656 | Msa0081570:intron | 40.0% | |
| CTTATAGTTCAGCTGCATTG+GGG | - | chr1_2:60211638-60211657 | Msa0081570:intron | 40.0% | |
| TCACGTTCTCCTAATACGAA+AGG | - | chr1_2:60211675-60211694 | Msa0081570:intron | 40.0% | |
| GGTAGTTCTCTTTCTTGCTT+TGG | - | chr1_2:60211696-60211715 | Msa0081570:intron | 40.0% | |
| GAGGACCTATGACTATATTC+TGG | - | chr1_2:60211899-60211918 | Msa0081570:intron | 40.0% | |
| AGAGAATGAAGCCATGGAAT+TGG | - | chr1_2:60211932-60211951 | Msa0081570:intron | 40.0% | |
| CAATGCTGTCATCTGATGAA+AGG | + | chr1_2:60211977-60211996 | None:intergenic | 40.0% | |
| !!! | GACATTAGTGTTGGCTTTTC+AGG | + | chr1_2:60212011-60212030 | None:intergenic | 40.0% |
| ! | GACAGAATGAAGGCATAAAG+CGG | + | chr1_2:60212077-60212096 | None:intergenic | 40.0% |
| ! | TTTGTGTTGATCAAAGGGGA+AGG | + | chr1_2:60212178-60212197 | None:intergenic | 40.0% |
| CCCCTTTGATCAACACAAAA+AGG | - | chr1_2:60212179-60212198 | Msa0081570:intron | 40.0% | |
| TTCACGTAAGCATTAACCCT+TGG | - | chr1_2:60212203-60212222 | Msa0081570:intron | 40.0% | |
| GTCAACTTTACGAGTTTCCA+AGG | + | chr1_2:60212223-60212242 | None:intergenic | 40.0% | |
| !! | TGCAAGTAGAGCTTTTTCTC+TGG | + | chr1_2:60212245-60212264 | None:intergenic | 40.0% |
| CTTGGACTTGAAAGCCTTAA+TGG | + | chr1_2:60212442-60212461 | None:intergenic | 40.0% | |
| CCTGCAGAAAATCTTCTTCT+TGG | + | chr1_2:60212460-60212479 | None:intergenic | 40.0% | |
| ! | CCAAGAAGAAGATTTTCTGC+AGG | - | chr1_2:60212457-60212476 | Msa0081570:intron | 40.0% |
| TGAAACACATATTTCCAGGC+AGG | - | chr1_2:60212576-60212595 | Msa0081570:intron | 40.0% | |
| ATACAATGCCTACGATCTTG+GGG | + | chr1_2:60212641-60212660 | None:intergenic | 40.0% | |
| AAATTACAGGTCCATTTGGC+TGG | + | chr1_2:60212814-60212833 | None:intergenic | 40.0% | |
| GCTCTTTCTCGTCAACTCAA+CGG | + | chr1_2:60209253-60209272 | None:intergenic | 45.0% | |
| ATACACACTATGAGACGCCA+TGG | - | chr1_2:60209317-60209336 | Msa0081570:three_prime_UTR | 45.0% | |
| ! | TTTTTCGTCCTCGTCGGTAA+TGG | - | chr1_2:60209429-60209448 | Msa0081570:CDS | 45.0% |
| TCAATCAACCATTACCGACG+AGG | + | chr1_2:60209440-60209459 | None:intergenic | 45.0% | |
| TGCAACAGTTTGTAGGCATG+GGG | - | chr1_2:60209463-60209482 | Msa0081570:CDS | 45.0% | |
| GGGGATTTATAGTTTCCTGG+TGG | - | chr1_2:60209482-60209501 | Msa0081570:CDS | 45.0% | |
| !! | AAGGAGCATTTCTGAGATGG+GGG | + | chr1_2:60209894-60209913 | None:intergenic | 45.0% |
| !! | GGAAAGGAGCATTTCTGAGA+TGG | + | chr1_2:60209897-60209916 | None:intergenic | 45.0% |
| AATGCTCCTTTCCCTGCTAT+TGG | - | chr1_2:60209904-60209923 | Msa0081570:intron | 45.0% | |
| !!! | CGACATATATTTTGGGACGG+AGG | - | chr1_2:60210024-60210043 | Msa0081570:CDS | 45.0% |
| ! | ACTGAAAACAGTTGATGCGG+TGG | + | chr1_2:60210132-60210151 | None:intergenic | 45.0% |
| !!! | TTGTGGTGAGGTTTTTCAGG+AGG | - | chr1_2:60210718-60210737 | Msa0081570:intron | 45.0% |
| !!! | TGTGGTGAGGTTTTTCAGGA+GGG | - | chr1_2:60210719-60210738 | Msa0081570:intron | 45.0% |
| GGGTGGAAAAGAAGTTGCTT+AGG | - | chr1_2:60210739-60210758 | Msa0081570:intron | 45.0% | |
| ACTTGTGCACTCGTCTTCAA+CGG | + | chr1_2:60210792-60210811 | None:intergenic | 45.0% | |
| TGTCGTCCCTGATCTTAAAG+AGG | - | chr1_2:60210860-60210879 | Msa0081570:intron | 45.0% | |
| AAGGGTTTGATCACCATTGC+AGG | - | chr1_2:60211075-60211094 | Msa0081570:intron | 45.0% | |
| AGGGTTTGATCACCATTGCA+GGG | - | chr1_2:60211076-60211095 | Msa0081570:intron | 45.0% | |
| AACAGATACTGACCCTGCAA+TGG | + | chr1_2:60211091-60211110 | None:intergenic | 45.0% | |
| GAACAGCTCATCATTGAAGG+AGG | - | chr1_2:60211372-60211391 | Msa0081570:CDS | 45.0% | |
| TCAGGTGCTTTGTGGATAAG+AGG | - | chr1_2:60211415-60211434 | Msa0081570:CDS | 45.0% | |
| CAGGTGCTTTGTGGATAAGA+GGG | - | chr1_2:60211416-60211435 | Msa0081570:CDS | 45.0% | |
| AGGTGCTTTGTGGATAAGAG+GGG | - | chr1_2:60211417-60211436 | Msa0081570:CDS | 45.0% | |
| ! | AATCAAAGGCTGGAGCACTT+TGG | + | chr1_2:60211821-60211840 | None:intergenic | 45.0% |
| CTGCACAGAAAATCAAAGGC+TGG | + | chr1_2:60211831-60211850 | None:intergenic | 45.0% | |
| GAGAGAAGAGAATGAAGCCA+TGG | - | chr1_2:60211926-60211945 | Msa0081570:intron | 45.0% | |
| ! | TGAGTTTTCAGAGCTCACCT+AGG | - | chr1_2:60212122-60212141 | Msa0081570:intron | 45.0% |
| TACTTGCAGCTGAGAAAGCA+AGG | - | chr1_2:60212257-60212276 | Msa0081570:intron | 45.0% | |
| ACTTGCAGCTGAGAAAGCAA+GGG | - | chr1_2:60212258-60212277 | Msa0081570:intron | 45.0% | |
| AATGAACTGTGCTCCCTCAT+TGG | + | chr1_2:60212304-60212323 | None:intergenic | 45.0% | |
| ! | CGTTTTGTCTCCAATGGAAG+AGG | + | chr1_2:60212331-60212350 | None:intergenic | 45.0% |
| CTTCCATTGGAGACAAAACG+CGG | - | chr1_2:60212331-60212350 | Msa0081570:intron | 45.0% | |
| ! | ATTTTCTGCAGGCACACCAT+CGG | - | chr1_2:60212468-60212487 | Msa0081570:CDS | 45.0% |
| ATGCTGCTAGAGAATACCGA+TGG | + | chr1_2:60212487-60212506 | None:intergenic | 45.0% | |
| TGAAGTTAGCAGGTGTGTCT+AGG | - | chr1_2:60212548-60212567 | Msa0081570:CDS | 45.0% | |
| GAAGTTAGCAGGTGTGTCTA+GGG | - | chr1_2:60212549-60212568 | Msa0081570:CDS | 45.0% | |
| AACTGAACATAGAACCTGCC+TGG | + | chr1_2:60212593-60212612 | None:intergenic | 45.0% | |
| !!! | ATTGATATTTTTTAATTTAA+GGG | - | chr1_2:60210407-60210426 | Msa0081570:CDS | 5.0% |
| ACACTATGAGACGCCATGGT+TGG | - | chr1_2:60209321-60209340 | Msa0081570:three_prime_UTR | 50.0% | |
| ACGTCCTCTCCATCCTTTAC+AGG | - | chr1_2:60209346-60209365 | Msa0081570:three_prime_UTR | 50.0% | |
| ACTTTCCTCGGACTCTTCCT+CGG | - | chr1_2:60209516-60209535 | Msa0081570:CDS | 50.0% | |
| ACAGCACCAATAGCAGGGAA+AGG | + | chr1_2:60209913-60209932 | None:intergenic | 50.0% | |
| ! | GCTGGTTTAGAGGGGTTATC+TGG | + | chr1_2:60210081-60210100 | None:intergenic | 50.0% |
| ! | AACAGTTGATGCGGTGGCAT+TGG | + | chr1_2:60210126-60210145 | None:intergenic | 50.0% |
| CACTCGTCTTCAACGGATCA+AGG | + | chr1_2:60210785-60210804 | None:intergenic | 50.0% | |
| GTTGAAGACGAGTGCACAAG+TGG | - | chr1_2:60210791-60210810 | Msa0081570:CDS | 50.0% | |
| ATGGTGGCAAGAAGTCCTCT+TGG | + | chr1_2:60211483-60211502 | None:intergenic | 50.0% | |
| CAGCTGAGAAAGCAAGGGAA+AGG | - | chr1_2:60212263-60212282 | Msa0081570:intron | 50.0% | |
| TCGTGCGAGAAAGACCAATG+AGG | - | chr1_2:60212287-60212306 | Msa0081570:intron | 50.0% | |
| CGTGCGAGAAAGACCAATGA+GGG | - | chr1_2:60212288-60212307 | Msa0081570:intron | 50.0% | |
| TGAACCATCCCCAAGATCGT+AGG | - | chr1_2:60212630-60212649 | Msa0081570:intron | 50.0% | |
| AATGCCTACGATCTTGGGGA+TGG | + | chr1_2:60212637-60212656 | None:intergenic | 50.0% | |
| TCTCAGCAGTTCGGTTTCCG+AGG | + | chr1_2:60209536-60209555 | None:intergenic | 55.0% | |
| !! | AGCATTTCTGAGATGGGGGC+TGG | + | chr1_2:60209890-60209909 | None:intergenic | 55.0% |
| !!! | GGTGAGGTTTTTCAGGAGGG+TGG | - | chr1_2:60210722-60210741 | Msa0081570:intron | 55.0% |
| ! | GGTCCGCGTTTTGTCTCCAA+TGG | + | chr1_2:60212337-60212356 | None:intergenic | 55.0% |
| ACGCGGACCATTGACGAATG+TGG | - | chr1_2:60212348-60212367 | Msa0081570:intron | 55.0% | |
| GGAGAGGACGTTGCCAACCA+TGG | + | chr1_2:60209337-60209356 | None:intergenic | 60.0% | |
| GGTTTCCGAGGAAGAGTCCG+AGG | + | chr1_2:60209524-60209543 | None:intergenic | 60.0% | |
| !! | GGTAACGGAAATGAGGGGGC+TGG | - | chr1_2:60209832-60209851 | Msa0081570:CDS | 60.0% |
| ! | GGGGCTGGTGCAATGTAGCT+CGG | - | chr1_2:60209847-60209866 | Msa0081570:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 60209206 | 60212836 | 60209206 | ID=Msa0081570;Name=Msa0081570 |
| chr1_2 | mRNA | 60209206 | 60212836 | 60209206 | ID=Msa0081570-mRNA-1;Parent=Msa0081570;Name=Msa0081570-mRNA-1;_AED=0.12;_eAED=0.12;_QI=120|1|1|1|1|1|9|185|506 |
| chr1_2 | exon | 60209206 | 60209909 | 60209206 | ID=Msa0081570-mRNA-1:exon:19627;Parent=Msa0081570-mRNA-1 |
| chr1_2 | exon | 60209990 | 60210148 | 60209990 | ID=Msa0081570-mRNA-1:exon:19626;Parent=Msa0081570-mRNA-1 |
| chr1_2 | exon | 60210346 | 60210426 | 60210346 | ID=Msa0081570-mRNA-1:exon:19625;Parent=Msa0081570-mRNA-1 |
| chr1_2 | exon | 60210536 | 60210664 | 60210536 | ID=Msa0081570-mRNA-1:exon:19624;Parent=Msa0081570-mRNA-1 |
| chr1_2 | exon | 60210780 | 60210851 | 60210780 | ID=Msa0081570-mRNA-1:exon:19623;Parent=Msa0081570-mRNA-1 |
| chr1_2 | exon | 60210945 | 60211013 | 60210945 | ID=Msa0081570-mRNA-1:exon:19622;Parent=Msa0081570-mRNA-1 |
| chr1_2 | exon | 60211125 | 60211460 | 60211125 | ID=Msa0081570-mRNA-1:exon:19621;Parent=Msa0081570-mRNA-1 |
| chr1_2 | exon | 60212458 | 60212571 | 60212458 | ID=Msa0081570-mRNA-1:exon:19620;Parent=Msa0081570-mRNA-1 |
| chr1_2 | exon | 60212675 | 60212836 | 60212675 | ID=Msa0081570-mRNA-1:exon:19619;Parent=Msa0081570-mRNA-1 |
| chr1_2 | five_prime_UTR | 60212717 | 60212836 | 60212717 | ID=Msa0081570-mRNA-1:five_prime_utr;Parent=Msa0081570-mRNA-1 |
| chr1_2 | CDS | 60212675 | 60212716 | 60212675 | ID=Msa0081570-mRNA-1:cds;Parent=Msa0081570-mRNA-1 |
| chr1_2 | CDS | 60212458 | 60212571 | 60212458 | ID=Msa0081570-mRNA-1:cds;Parent=Msa0081570-mRNA-1 |
| chr1_2 | CDS | 60211125 | 60211460 | 60211125 | ID=Msa0081570-mRNA-1:cds;Parent=Msa0081570-mRNA-1 |
| chr1_2 | CDS | 60210945 | 60211013 | 60210945 | ID=Msa0081570-mRNA-1:cds;Parent=Msa0081570-mRNA-1 |
| chr1_2 | CDS | 60210780 | 60210851 | 60210780 | ID=Msa0081570-mRNA-1:cds;Parent=Msa0081570-mRNA-1 |
| chr1_2 | CDS | 60210536 | 60210664 | 60210536 | ID=Msa0081570-mRNA-1:cds;Parent=Msa0081570-mRNA-1 |
| chr1_2 | CDS | 60210346 | 60210426 | 60210346 | ID=Msa0081570-mRNA-1:cds;Parent=Msa0081570-mRNA-1 |
| chr1_2 | CDS | 60209990 | 60210148 | 60209990 | ID=Msa0081570-mRNA-1:cds;Parent=Msa0081570-mRNA-1 |
| chr1_2 | CDS | 60209391 | 60209909 | 60209391 | ID=Msa0081570-mRNA-1:cds;Parent=Msa0081570-mRNA-1 |
| chr1_2 | three_prime_UTR | 60209206 | 60209390 | 60209206 | ID=Msa0081570-mRNA-1:three_prime_utr;Parent=Msa0081570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
