AlfalfaGEDB | MS.gene68238

M. sativa cultivar XinJiangDaYe / MS.gene68238

KEGG: K02925
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00297.25

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68238.t1	XP_024642001.1	95.4	389	15	1	1	386	1	389	5.20E-211	743.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68238.t1	P17094	85.6	382	55	0	1	382	1	382	9.4e-193	674.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68238.t1	G7IBY1	95.4	389	15	1	1	386	1	389	3.8e-211	743.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene68238	MS.gene047206	PPI
MS.gene68238	MS.gene018651	PPI
MS.gene68238	MS.gene029415	PPI
MS.gene68238	MS.gene036487	PPI
MS.gene68238	MS.gene59319	PPI
MS.gene32092	MS.gene68238	PPI
MS.gene68238	MS.gene57660	PPI
MS.gene35076	MS.gene68238	PPI
MS.gene068781	MS.gene68238	PPI
MS.gene68238	MS.gene065189	PPI
MS.gene68238	MS.gene95472	PPI
MS.gene68238	MS.gene32091	PPI
MS.gene68238	MS.gene95471	PPI
MS.gene68238	MS.gene012333	PPI
MS.gene68238	MS.gene029547	PPI
MS.gene36414	MS.gene68238	PPI
MS.gene68238	MS.gene059880	PPI
MS.gene68238	MS.gene010453	PPI
MS.gene68238	MS.gene01172	PPI
MS.gene70551	MS.gene68238	PPI
MS.gene68238	MS.gene00612	PPI
MS.gene061905	MS.gene68238	PPI
MS.gene68238	MS.gene96780	PPI
MS.gene92970	MS.gene68238	PPI
MS.gene059846	MS.gene68238	PPI
MS.gene047421	MS.gene68238	PPI
MS.gene09845	MS.gene68238	PPI
MS.gene68238	MS.gene000480	PPI
MS.gene68238	MS.gene067072	PPI
MS.gene68238	MS.gene40019	PPI
MS.gene68238	MS.gene90360	PPI
MS.gene68238	MS.gene75537	PPI
MS.gene68238	MS.gene39294	PPI
MS.gene047734	MS.gene68238	PPI
MS.gene68238	MS.gene065146	PPI
MS.gene069038	MS.gene68238	PPI
MS.gene68238	MS.gene031406	PPI
MS.gene037902	MS.gene68238	PPI
MS.gene68238	MS.gene77392	PPI
MS.gene68238	MS.gene028377	PPI
MS.gene95644	MS.gene68238	PPI
MS.gene68238	MS.gene56525	PPI
MS.gene68238	MS.gene96949	PPI
MS.gene68238	MS.gene060923	PPI
MS.gene68238	MS.gene002204	PPI
MS.gene68238	MS.gene35157	PPI
MS.gene018553	MS.gene68238	PPI
MS.gene68238	MS.gene41329	PPI
MS.gene68238	MS.gene031484	PPI
MS.gene68238	MS.gene059878	PPI
MS.gene68238	MS.gene23437	PPI
MS.gene68238	MS.gene022752	PPI
MS.gene004705	MS.gene68238	PPI
MS.gene68238	MS.gene045180	PPI
MS.gene68238	MS.gene041557	PPI
MS.gene68238	MS.gene64512	PPI
MS.gene45646	MS.gene68238	PPI
MS.gene68238	MS.gene071916	PPI
MS.gene68238	MS.gene36492	PPI
MS.gene028376	MS.gene68238	PPI
MS.gene68238	MS.gene012331	PPI
MS.gene68238	MS.gene020215	PPI
MS.gene68238	MS.gene43350	PPI
MS.gene004704	MS.gene68238	PPI
MS.gene68238	MS.gene023154	PPI
MS.gene073324	MS.gene68238	PPI
MS.gene68238	MS.gene035331	PPI
MS.gene68238	MS.gene035194	PPI
MS.gene031378	MS.gene68238	PPI
MS.gene68238	MS.gene99779	PPI
MS.gene68238	MS.gene028300	PPI
MS.gene53720	MS.gene68238	PPI
MS.gene68238	MS.gene072064	PPI
MS.gene68238	MS.gene96312	PPI
MS.gene28749	MS.gene68238	PPI
MS.gene68238	MS.gene002038	PPI
MS.gene68238	MS.gene40020	PPI
MS.gene006800	MS.gene68238	PPI
MS.gene065652	MS.gene68238	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68238.t1	MTR_1g098540	95.373	389	15	1	1	386	1	389	0.0	735
MS.gene68238.t1	MTR_4g094398	87.147	389	47	1	1	386	1	389	0.0	687

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
MS.gene68238.t1	AT1G43170	85.602	382	55	1	382	1	382	671
MS.gene68238.t1	AT1G43170	85.602	382	55	1	382	1	382	671
MS.gene68238.t1	AT1G43170	85.602	382	55	1	382	1	382	671
MS.gene68238.t1	AT1G43170	85.602	382	55	1	382	1	382	671
MS.gene68238.t1	AT1G43170	85.602	382	55	1	382	1	382	671
MS.gene68238.t1	AT1G43170	85.602	382	55	1	382	1	382	671
MS.gene68238.t1	AT1G43170	85.602	382	55	1	382	1	382	671
MS.gene68238.t1	AT1G43170	85.602	382	55	1	382	1	382	671
MS.gene68238.t1	AT1G61580	82.984	382	65	1	382	1	382	657
MS.gene68238.t1	AT1G43170	84.083	289	46	94	382	11	299	519

Find 125 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAACTTGAATTTCCATGATA+TGG	0.153600	4.1:-61058317	None:intergenic
GTAAGACTCACAGGGGTTTA+AGG	0.215484	4.1:+61058508	MS.gene68238:CDS
CGTCAATCATTTCATCCTTC+TGG	0.256903	4.1:-61058416	None:intergenic
GGCTTGGTTGGGTCATCCTT+AGG	0.263169	4.1:-61057877	None:intergenic
GCACCCAAGACACAGTTCTT+TGG	0.277530	4.1:+61057801	MS.gene68238:CDS
ACCCAAGCTAACTGCCTTCT+TGG	0.286054	4.1:+61057900	MS.gene68238:CDS
ATCGATACCTCTTCCAAGTT+TGG	0.293244	4.1:+61058867	MS.gene68238:CDS
TGACGAGCAGCACGCTTTCT+TGG	0.308401	4.1:-61057832	None:intergenic
GTTAGCTTGGGTGGCTTGGT+TGG	0.310280	4.1:-61057889	None:intergenic
CACCCAAGACACAGTTCTTT+GGG	0.315576	4.1:+61057802	MS.gene68238:CDS
TTCTTGTGAAGCTTGGATCC+TGG	0.364837	4.1:-61057967	None:intergenic
AACTTGAATTTCCATGATAT+GGG	0.365910	4.1:-61058316	None:intergenic
TCTTTCACTGTTGCAAGAAC+TGG	0.369938	4.1:+61058570	MS.gene68238:CDS
TTAGCTTGGGTGGCTTGGTT+GGG	0.372233	4.1:-61057888	None:intergenic
GGCAGTTAGCTTGGGTGGCT+TGG	0.374534	4.1:-61057893	None:intergenic
ACTTCTTCAGTTTCTCAAGC+TGG	0.375617	4.1:-61058224	None:intergenic
CAGAGTAATAACCCTCTTCT+TGG	0.375680	4.1:-61058784	None:intergenic
GCTTGGTTGGGTCATCCTTA+GGG	0.388678	4.1:-61057876	None:intergenic
TTAAGGAAGGTTGCATGTAT+TGG	0.405958	4.1:+61058525	MS.gene68238:CDS
CTTCTTCAGTTTCTCAAGCT+GGG	0.407032	4.1:-61058223	None:intergenic
GACGAGCAGCACGCTTTCTT+GGG	0.410830	4.1:-61057831	None:intergenic
TTTGCTTCTCTGATGTTGTC+TGG	0.411800	4.1:-61058902	None:intergenic
AACTGCCTTCTTGGGTTACA+AGG	0.412933	4.1:+61057909	MS.gene68238:CDS
ATCATGGAAATTCAAGTTAA+CGG	0.420034	4.1:+61058321	MS.gene68238:CDS
ATCCCAAAGAACTGTGTCTT+GGG	0.421553	4.1:-61057804	None:intergenic
GAAACGACCACGTCCAAACT+TGG	0.422838	4.1:-61058880	None:intergenic
TCCGAACATTGAACACTGTC+TGG	0.427828	4.1:+61058076	MS.gene68238:CDS
CCCAAGCTAACTGCCTTCTT+GGG	0.428836	4.1:+61057901	MS.gene68238:CDS
ATTTACAAGCTCGGCAAAGT+TGG	0.433680	4.1:+61058633	MS.gene68238:CDS
ACCCAAGAAGGCAGTTAGCT+TGG	0.433816	4.1:-61057902	None:intergenic
ATGAAGGTGTTGTTACTCGT+TGG	0.437276	4.1:+61058466	MS.gene68238:CDS
ATGGTTGTTGTCGGTGTTGT+GGG	0.440477	4.1:+61058030	MS.gene68238:CDS
AGTCTCCTTCTTGTGAAGCT+TGG	0.450717	4.1:-61057974	None:intergenic
CATTGGAGTGACCAAGGGTA+AGG	0.450805	4.1:+61058440	MS.gene68238:CDS
GATGAAATGATTGACGTCAT+TGG	0.450828	4.1:+61058423	MS.gene68238:CDS
TGAAGGTGTTGTTACTCGTT+GGG	0.451002	4.1:+61058467	MS.gene68238:CDS
ATACAGTTTCTTTGAGAAGC+AGG	0.454598	4.1:+61058374	MS.gene68238:CDS
GTCTTCCTCGTAAGACTCAC+AGG	0.464950	4.1:+61058499	MS.gene68238:CDS
TGAGAAAGACATTACACCTA+TGG	0.467448	4.1:+61058695	MS.gene68238:CDS
CCCAAGAAGGCAGTTAGCTT+GGG	0.469247	4.1:-61057901	None:intergenic
ACTACCATAATTAAGCTTTG+AGG	0.473296	4.1:-61058929	None:intergenic
TCCAGACAGTGTTCAATGTT+CGG	0.475815	4.1:-61058077	None:intergenic
GACTTCTCGTCTTGCTCTTG+AGG	0.480840	4.1:+61058827	MS.gene68238:CDS
TATGGTTGTTGTCGGTGTTG+TGG	0.481177	4.1:+61058029	MS.gene68238:CDS
TGTTGGCTCACACTCAGATC+AGG	0.484616	4.1:+61058265	MS.gene68238:CDS
CACTCAGATCAGGAAAATGA+AGG	0.485840	4.1:+61058275	MS.gene68238:CDS
TGTTCAGCTCAGTTCTGTGA+TGG	0.485951	4.1:-61058605	None:intergenic
GCCTTCTTGGGTTACAAGGT+TGG	0.488962	4.1:+61057913	MS.gene68238:CDS
AACAAGAAAATTTACAAGCT+CGG	0.491496	4.1:+61058624	MS.gene68238:CDS
AGAGTAATAACCCTCTTCTT+GGG	0.492275	4.1:-61058783	None:intergenic
GACGAGAAGTCTGCTTAAGA+AGG	0.502167	4.1:-61058815	None:intergenic
ACCCCTCCTATGGTTGTTGT+CGG	0.504742	4.1:+61058021	MS.gene68238:CDS
GCAGAAGAAAGCCCATATCA+TGG	0.507648	4.1:+61058305	MS.gene68238:CDS
GGAAGAAGAAGATGTCTCAC+AGG	0.511229	4.1:+61057770	None:intergenic
AATCCCAAAGAACTGTGTCT+TGG	0.511308	4.1:-61057805	None:intergenic
ACCTTCATAACCCTTACCCT+TGG	0.517932	4.1:-61058451	None:intergenic
AATCATTGAGACCCCTCCTA+TGG	0.520054	4.1:+61058011	MS.gene68238:CDS
ATGATCAAGGGAGGCTGTGT+TGG	0.526401	4.1:+61058759	MS.gene68238:CDS
ACCAAGGGTAAGGGTTATGA+AGG	0.530593	4.1:+61058450	MS.gene68238:CDS
GTCAGAGAAGTTGAGAAGCC+AGG	0.531384	4.1:+61057949	MS.gene68238:CDS
TCTCAACTTCTCTGACAATG+TGG	0.533992	4.1:-61057942	None:intergenic
GTTCAATGTTCGGAGACCAC+GGG	0.540332	4.1:-61058067	None:intergenic
CGAACTCAGTCTGAGCGCCA+TGG	0.544176	4.1:-61058665	None:intergenic
AAGCAGTATAAAAGTGATGA+GGG	0.545940	4.1:+61058183	MS.gene68238:CDS
TATACTGCTTTGAGTAATTG+CGG	0.553884	4.1:-61058170	None:intergenic
ACCTCTTCCAAGTTTGGACG+TGG	0.554712	4.1:+61058873	MS.gene68238:CDS
CGGTGGTACCATCGCACAGA+AGG	0.555485	4.1:+61058341	MS.gene68238:CDS
AGGATCCAAGCTTCACAAGA+AGG	0.558613	4.1:+61057969	MS.gene68238:CDS
AAGAAGGCAGTTAGCTTGGG+TGG	0.559172	4.1:-61057898	None:intergenic
ACACCGACAACAACCATAGG+AGG	0.565736	4.1:-61058024	None:intergenic
AAAGCAGTATAAAAGTGATG+AGG	0.570008	4.1:+61058182	MS.gene68238:CDS
GAACTCAGTCTGAGCGCCAT+GGG	0.574470	4.1:-61058664	None:intergenic
ACCAACCTTGTAACCCAAGA+AGG	0.575488	4.1:-61057914	None:intergenic
AAGTCTGCTTAAGAAGGGAC+TGG	0.577488	4.1:-61058809	None:intergenic
TGTTCAATGTTCGGAGACCA+CGG	0.577689	4.1:-61058068	None:intergenic
AAAAGTGAAGGCTTTCCCTA+AGG	0.579121	4.1:+61057861	MS.gene68238:CDS
GCGCTCAGACTGAGTTCGAT+AGG	0.584674	4.1:+61058670	MS.gene68238:CDS
TCTTCCTCGTAAGACTCACA+GGG	0.584859	4.1:+61058500	MS.gene68238:CDS
GACTCACAGGGGTTTAAGGA+AGG	0.588292	4.1:+61058512	MS.gene68238:CDS
ACAACACCGACAACAACCAT+AGG	0.591726	4.1:-61058027	None:intergenic
ATTGGAGTGACCAAGGGTAA+GGG	0.593223	4.1:+61058441	MS.gene68238:CDS
CTCAACTTCTCTGACAATGT+GGG	0.593572	4.1:-61057941	None:intergenic
TGGTACCATCGCACAGAAGG+TGG	0.595874	4.1:+61058344	MS.gene68238:CDS
GAGAAAGACATTACACCTAT+GGG	0.596080	4.1:+61058696	MS.gene68238:CDS
ACCACGTCCAAACTTGGAAG+AGG	0.597448	4.1:-61058874	None:intergenic
TGACGTCATTGGAGTGACCA+AGG	0.598559	4.1:+61058434	MS.gene68238:CDS
AGGTTGCATGTATTGGTGCT+TGG	0.600568	4.1:+61058532	MS.gene68238:CDS
ACAGTGAAAGAAACTCTAGC+AGG	0.607261	4.1:-61058558	None:intergenic
CACCGACAACAACCATAGGA+GGG	0.607553	4.1:-61058023	None:intergenic
ATGGGTGGTTTCCCACACTA+CGG	0.607609	4.1:+61058714	MS.gene68238:CDS
CTGTGTTGGTCCCAAGAAGA+GGG	0.610053	4.1:+61058773	MS.gene68238:CDS
TGCAACTGTTATCCGTGTGT+TGG	0.610763	4.1:+61058248	MS.gene68238:CDS
TATCGATGCTGTGTTCCAGA+AGG	0.612569	4.1:+61058401	MS.gene68238:CDS
ACGAGAAGTCTGCTTAAGAA+GGG	0.612938	4.1:-61058814	None:intergenic
GCTGTGTTGGTCCCAAGAAG+AGG	0.613945	4.1:+61058772	MS.gene68238:CDS
CCTTGACAATACCGTAGTGT+GGG	0.616873	4.1:-61058725	None:intergenic
CTGGTGCAAGTCCATGCAGA+AGG	0.618228	4.1:+61058143	MS.gene68238:CDS
CAAGCTCGGCAAAGTTGGAG+AGG	0.619055	4.1:+61058638	MS.gene68238:CDS
CCCACACTACGGTATTGTCA+AGG	0.620478	4.1:+61058725	MS.gene68238:CDS
GAAGGTGTTGTTACTCGTTG+GGG	0.623077	4.1:+61058468	MS.gene68238:CDS
TTCTGGAACACAGCATCGAT+AGG	0.625976	4.1:-61058399	None:intergenic
TAGTGTGGGAAACCACCCAT+AGG	0.626093	4.1:-61058711	None:intergenic
GACGTCATTGGAGTGACCAA+GGG	0.628824	4.1:+61058435	MS.gene68238:CDS
TTAATTTCCTCGCTTAAATG+CGG	0.628939	4.1:-61058102	None:intergenic
GTTGCAAGAACTGGTCAGAA+CGG	0.629684	4.1:+61058579	MS.gene68238:CDS
ATTGCGGAAAGCCTTCTGCA+TGG	0.629972	4.1:-61058154	None:intergenic
AAAGTCCACCTTCTGTGCGA+TGG	0.631954	4.1:-61058349	None:intergenic
ACTCAGATCAGGAAAATGAA+GGG	0.633414	4.1:+61058276	MS.gene68238:CDS
AAAGTTGGAGAGGAGACCCA+TGG	0.636220	4.1:+61058648	MS.gene68238:CDS
ACCGACAACAACCATAGGAG+GGG	0.637572	4.1:-61058022	None:intergenic
AGGGGTCTCAATGATTGTCA+CGG	0.640024	4.1:-61058004	None:intergenic
TCCTTGACAATACCGTAGTG+TGG	0.648748	4.1:-61058726	None:intergenic
AAAGACATTACACCTATGGG+TGG	0.665025	4.1:+61058699	MS.gene68238:CDS
CTGGACTCCGCATTTAAGCG+AGG	0.669157	4.1:+61058095	MS.gene68238:CDS
TCGTCACAGAGGAAAAGTGA+AGG	0.670298	4.1:+61057849	MS.gene68238:CDS
AAACCCCTGTGAGTCTTACG+AGG	0.675290	4.1:-61058504	None:intergenic
TAAGCGAGGAAATTAAGCGT+CGG	0.681183	4.1:+61058109	MS.gene68238:CDS
TCTGAGTGTGAGCCAACACA+CGG	0.681973	4.1:-61058260	None:intergenic
GGCTATGTGAAAACTCCCCG+TGG	0.687655	4.1:+61058051	MS.gene68238:CDS
AGCAGTATAAAAGTGATGAG+GGG	0.688880	4.1:+61058184	MS.gene68238:CDS
TTCAATGTTCGGAGACCACG+GGG	0.689564	4.1:-61058066	None:intergenic
AAGCGTGCTGCTCGTCACAG+AGG	0.692287	4.1:+61057838	MS.gene68238:CDS
TCACAAGAAGGAGACTTGTG+AGG	0.693775	4.1:+61057981	MS.gene68238:CDS
ATGGAAATTCAAGTTAACGG+TGG	0.728022	4.1:+61058324	MS.gene68238:CDS
CTTCCTCGTAAGACTCACAG+GGG	0.755519	4.1:+61058501	MS.gene68238:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AACAAGAAAATTTACAAGCT+CGG	+	chr4.1:61058624-61058643	MS.gene68238:CDS	25.0%
!	AACTTGAATTTCCATGATAT+GGG	-	chr4.1:61058319-61058338	None:intergenic	25.0%
!	TAACTTGAATTTCCATGATA+TGG	-	chr4.1:61058320-61058339	None:intergenic	25.0%
!!	ATCATGGAAATTCAAGTTAA+CGG	+	chr4.1:61058321-61058340	MS.gene68238:CDS	25.0%
	AAAGCAGTATAAAAGTGATG+AGG	+	chr4.1:61058182-61058201	MS.gene68238:CDS	30.0%
	AAGCAGTATAAAAGTGATGA+GGG	+	chr4.1:61058183-61058202	MS.gene68238:CDS	30.0%
	TTAATTTCCTCGCTTAAATG+CGG	-	chr4.1:61058105-61058124	None:intergenic	30.0%
!	GAAGATTTTCTGATGATCAA+GGG	+	chr4.1:61058747-61058766	MS.gene68238:CDS	30.0%
!	TATACTGCTTTGAGTAATTG+CGG	-	chr4.1:61058173-61058192	None:intergenic	30.0%
	ACTCAGATCAGGAAAATGAA+GGG	+	chr4.1:61058276-61058295	MS.gene68238:CDS	35.0%
	AGAGTAATAACCCTCTTCTT+GGG	-	chr4.1:61058786-61058805	None:intergenic	35.0%
	AGCAGTATAAAAGTGATGAG+GGG	+	chr4.1:61058184-61058203	MS.gene68238:CDS	35.0%
	GAGAAAGACATTACACCTAT+GGG	+	chr4.1:61058696-61058715	MS.gene68238:CDS	35.0%
	GATGAAATGATTGACGTCAT+TGG	+	chr4.1:61058423-61058442	MS.gene68238:CDS	35.0%
	TGAGAAAGACATTACACCTA+TGG	+	chr4.1:61058695-61058714	MS.gene68238:CDS	35.0%
	TTAAGGAAGGTTGCATGTAT+TGG	+	chr4.1:61058525-61058544	MS.gene68238:CDS	35.0%
!	ATACAGTTTCTTTGAGAAGC+AGG	+	chr4.1:61058374-61058393	MS.gene68238:CDS	35.0%
!	ATGGAAATTCAAGTTAACGG+TGG	+	chr4.1:61058324-61058343	MS.gene68238:CDS	35.0%
!	GGAAGATTTTCTGATGATCA+AGG	+	chr4.1:61058746-61058765	MS.gene68238:CDS	35.0%
!!!	AATTAAGCGTCGGTTTTACA+CGG	+	chr4.1:61058119-61058138	MS.gene68238:CDS	35.0%
	AAAAGTGAAGGCTTTCCCTA+AGG	+	chr4.1:61057861-61057880	MS.gene68238:CDS	40.0%
	AAAGACATTACACCTATGGG+TGG	+	chr4.1:61058699-61058718	MS.gene68238:CDS	40.0%
	AATCCCAAAGAACTGTGTCT+TGG	-	chr4.1:61057808-61057827	None:intergenic	40.0%
	ACAGTGAAAGAAACTCTAGC+AGG	-	chr4.1:61058561-61058580	None:intergenic	40.0%
	ACGAGAAGTCTGCTTAAGAA+GGG	-	chr4.1:61058817-61058836	None:intergenic	40.0%
	ACTTCTTCAGTTTCTCAAGC+TGG	-	chr4.1:61058227-61058246	None:intergenic	40.0%
	ATCCCAAAGAACTGTGTCTT+GGG	-	chr4.1:61057807-61057826	None:intergenic	40.0%
	ATCGATACCTCTTCCAAGTT+TGG	+	chr4.1:61058867-61058886	MS.gene68238:CDS	40.0%
	ATTTACAAGCTCGGCAAAGT+TGG	+	chr4.1:61058633-61058652	MS.gene68238:CDS	40.0%
	CACTCAGATCAGGAAAATGA+AGG	+	chr4.1:61058275-61058294	MS.gene68238:CDS	40.0%
	CAGAGTAATAACCCTCTTCT+TGG	-	chr4.1:61058787-61058806	None:intergenic	40.0%
	CGTCAATCATTTCATCCTTC+TGG	-	chr4.1:61058419-61058438	None:intergenic	40.0%
	CTCAACTTCTCTGACAATGT+GGG	-	chr4.1:61057944-61057963	None:intergenic	40.0%
	CTTCTTCAGTTTCTCAAGCT+GGG	-	chr4.1:61058226-61058245	None:intergenic	40.0%
	TAAGCGAGGAAATTAAGCGT+CGG	+	chr4.1:61058109-61058128	MS.gene68238:CDS	40.0%
	TCCAGACAGTGTTCAATGTT+CGG	-	chr4.1:61058080-61058099	None:intergenic	40.0%
	TCTCAACTTCTCTGACAATG+TGG	-	chr4.1:61057945-61057964	None:intergenic	40.0%
	TCTTTCACTGTTGCAAGAAC+TGG	+	chr4.1:61058570-61058589	MS.gene68238:CDS	40.0%
	TTTGCTTCTCTGATGTTGTC+TGG	-	chr4.1:61058905-61058924	None:intergenic	40.0%
!	GATTTTCTGATGATCAAGGG+AGG	+	chr4.1:61058750-61058769	MS.gene68238:CDS	40.0%
!!	ATGAAGGTGTTGTTACTCGT+TGG	+	chr4.1:61058466-61058485	MS.gene68238:CDS	40.0%
!!	TGAAGGTGTTGTTACTCGTT+GGG	+	chr4.1:61058467-61058486	MS.gene68238:CDS	40.0%
	AACTGCCTTCTTGGGTTACA+AGG	+	chr4.1:61057909-61057928	MS.gene68238:CDS	45.0%
	AAGTCTGCTTAAGAAGGGAC+TGG	-	chr4.1:61058812-61058831	None:intergenic	45.0%
	AATCATTGAGACCCCTCCTA+TGG	+	chr4.1:61058011-61058030	MS.gene68238:CDS	45.0%
	ACAACACCGACAACAACCAT+AGG	-	chr4.1:61058030-61058049	None:intergenic	45.0%
	ACCAACCTTGTAACCCAAGA+AGG	-	chr4.1:61057917-61057936	None:intergenic	45.0%
	ACCAAGGGTAAGGGTTATGA+AGG	+	chr4.1:61058450-61058469	MS.gene68238:CDS	45.0%
	ACCTTCATAACCCTTACCCT+TGG	-	chr4.1:61058454-61058473	None:intergenic	45.0%
	AGGATCCAAGCTTCACAAGA+AGG	+	chr4.1:61057969-61057988	MS.gene68238:CDS	45.0%
	AGGGGTCTCAATGATTGTCA+CGG	-	chr4.1:61058007-61058026	None:intergenic	45.0%
	AGTCTCCTTCTTGTGAAGCT+TGG	-	chr4.1:61057977-61057996	None:intergenic	45.0%
	ATTGGAGTGACCAAGGGTAA+GGG	+	chr4.1:61058441-61058460	MS.gene68238:CDS	45.0%
	CACCCAAGACACAGTTCTTT+GGG	+	chr4.1:61057802-61057821	MS.gene68238:CDS	45.0%
	CCTTGACAATACCGTAGTGT+GGG	-	chr4.1:61058728-61058747	None:intergenic	45.0%
	GACGAGAAGTCTGCTTAAGA+AGG	-	chr4.1:61058818-61058837	None:intergenic	45.0%
	GCAGAAGAAAGCCCATATCA+TGG	+	chr4.1:61058305-61058324	MS.gene68238:CDS	45.0%
	GTAAGACTCACAGGGGTTTA+AGG	+	chr4.1:61058508-61058527	MS.gene68238:CDS	45.0%
	GTTGCAAGAACTGGTCAGAA+CGG	+	chr4.1:61058579-61058598	MS.gene68238:CDS	45.0%
	TATCGATGCTGTGTTCCAGA+AGG	+	chr4.1:61058401-61058420	MS.gene68238:CDS	45.0%
	TCACAAGAAGGAGACTTGTG+AGG	+	chr4.1:61057981-61058000	MS.gene68238:CDS	45.0%
	TCCGAACATTGAACACTGTC+TGG	+	chr4.1:61058076-61058095	MS.gene68238:CDS	45.0%
	TCCTTGACAATACCGTAGTG+TGG	-	chr4.1:61058729-61058748	None:intergenic	45.0%
	TCGTCACAGAGGAAAAGTGA+AGG	+	chr4.1:61057849-61057868	MS.gene68238:CDS	45.0%
	TCTTCCTCGTAAGACTCACA+GGG	+	chr4.1:61058500-61058519	MS.gene68238:CDS	45.0%
	TGCAACTGTTATCCGTGTGT+TGG	+	chr4.1:61058248-61058267	MS.gene68238:CDS	45.0%
	TGTTCAATGTTCGGAGACCA+CGG	-	chr4.1:61058071-61058090	None:intergenic	45.0%
	TGTTCAGCTCAGTTCTGTGA+TGG	-	chr4.1:61058608-61058627	None:intergenic	45.0%
	TTCTTGTGAAGCTTGGATCC+TGG	-	chr4.1:61057970-61057989	None:intergenic	45.0%
!	AGGTTGCATGTATTGGTGCT+TGG	+	chr4.1:61058532-61058551	MS.gene68238:CDS	45.0%
!!	ATGGTTGTTGTCGGTGTTGT+GGG	+	chr4.1:61058030-61058049	MS.gene68238:CDS	45.0%
!!	GAAGGTGTTGTTACTCGTTG+GGG	+	chr4.1:61058468-61058487	MS.gene68238:CDS	45.0%
!!	TATGGTTGTTGTCGGTGTTG+TGG	+	chr4.1:61058029-61058048	MS.gene68238:CDS	45.0%
!!	TTCTGGAACACAGCATCGAT+AGG	-	chr4.1:61058402-61058421	None:intergenic	45.0%
	AAACCCCTGTGAGTCTTACG+AGG	-	chr4.1:61058507-61058526	None:intergenic	50.0%
	AAAGTCCACCTTCTGTGCGA+TGG	-	chr4.1:61058352-61058371	None:intergenic	50.0%
	AAAGTTGGAGAGGAGACCCA+TGG	+	chr4.1:61058648-61058667	MS.gene68238:CDS	50.0%
	ACACCGACAACAACCATAGG+AGG	-	chr4.1:61058027-61058046	None:intergenic	50.0%
	ACCACGTCCAAACTTGGAAG+AGG	-	chr4.1:61058877-61058896	None:intergenic	50.0%
	ACCCAAGAAGGCAGTTAGCT+TGG	-	chr4.1:61057905-61057924	None:intergenic	50.0%
	ACCCAAGCTAACTGCCTTCT+TGG	+	chr4.1:61057900-61057919	MS.gene68238:CDS	50.0%
	ACCCCTCCTATGGTTGTTGT+CGG	+	chr4.1:61058021-61058040	MS.gene68238:CDS	50.0%
	ACCGACAACAACCATAGGAG+GGG	-	chr4.1:61058025-61058044	None:intergenic	50.0%
	ACCTCTTCCAAGTTTGGACG+TGG	+	chr4.1:61058873-61058892	MS.gene68238:CDS	50.0%
	ATGATCAAGGGAGGCTGTGT+TGG	+	chr4.1:61058759-61058778	MS.gene68238:CDS	50.0%
	ATGGGTGGTTTCCCACACTA+CGG	+	chr4.1:61058714-61058733	MS.gene68238:CDS	50.0%
	ATTGCGGAAAGCCTTCTGCA+TGG	-	chr4.1:61058157-61058176	None:intergenic	50.0%
	CACCGACAACAACCATAGGA+GGG	-	chr4.1:61058026-61058045	None:intergenic	50.0%
	CATTGGAGTGACCAAGGGTA+AGG	+	chr4.1:61058440-61058459	MS.gene68238:CDS	50.0%
	CCCAAGCTAACTGCCTTCTT+GGG	+	chr4.1:61057901-61057920	MS.gene68238:CDS	50.0%
	CCCACACTACGGTATTGTCA+AGG	+	chr4.1:61058725-61058744	MS.gene68238:CDS	50.0%
	CTTCCTCGTAAGACTCACAG+GGG	+	chr4.1:61058501-61058520	MS.gene68238:CDS	50.0%
	GAAACGACCACGTCCAAACT+TGG	-	chr4.1:61058883-61058902	None:intergenic	50.0%
	GACGTCATTGGAGTGACCAA+GGG	+	chr4.1:61058435-61058454	MS.gene68238:CDS	50.0%
	GACTCACAGGGGTTTAAGGA+AGG	+	chr4.1:61058512-61058531	MS.gene68238:CDS	50.0%
	GACTTCTCGTCTTGCTCTTG+AGG	+	chr4.1:61058827-61058846	MS.gene68238:CDS	50.0%
	GCACCCAAGACACAGTTCTT+TGG	+	chr4.1:61057801-61057820	MS.gene68238:CDS	50.0%
	GCCTTCTTGGGTTACAAGGT+TGG	+	chr4.1:61057913-61057932	MS.gene68238:CDS	50.0%
	GCTTGGTTGGGTCATCCTTA+GGG	-	chr4.1:61057879-61057898	None:intergenic	50.0%
	GTCAGAGAAGTTGAGAAGCC+AGG	+	chr4.1:61057949-61057968	MS.gene68238:CDS	50.0%
	GTCTTCCTCGTAAGACTCAC+AGG	+	chr4.1:61058499-61058518	MS.gene68238:CDS	50.0%
	GTTCAATGTTCGGAGACCAC+GGG	-	chr4.1:61058070-61058089	None:intergenic	50.0%
	TAGTGTGGGAAACCACCCAT+AGG	-	chr4.1:61058714-61058733	None:intergenic	50.0%
	TCTGAGTGTGAGCCAACACA+CGG	-	chr4.1:61058263-61058282	None:intergenic	50.0%
	TGACGTCATTGGAGTGACCA+AGG	+	chr4.1:61058434-61058453	MS.gene68238:CDS	50.0%
	TTCAATGTTCGGAGACCACG+GGG	-	chr4.1:61058069-61058088	None:intergenic	50.0%
!	AAGAAGGCAGTTAGCTTGGG+TGG	-	chr4.1:61057901-61057920	None:intergenic	50.0%
!	CCCAAGAAGGCAGTTAGCTT+GGG	-	chr4.1:61057904-61057923	None:intergenic	50.0%
!	CTGTGTTGGTCCCAAGAAGA+GGG	+	chr4.1:61058773-61058792	MS.gene68238:CDS	50.0%
!!	TGTTGGCTCACACTCAGATC+AGG	+	chr4.1:61058265-61058284	MS.gene68238:CDS	50.0%
!!	TTAGCTTGGGTGGCTTGGTT+GGG	-	chr4.1:61057891-61057910	None:intergenic	50.0%
	CAAGCTCGGCAAAGTTGGAG+AGG	+	chr4.1:61058638-61058657	MS.gene68238:CDS	55.0%
	CTGGACTCCGCATTTAAGCG+AGG	+	chr4.1:61058095-61058114	MS.gene68238:CDS	55.0%
	CTGGTGCAAGTCCATGCAGA+AGG	+	chr4.1:61058143-61058162	MS.gene68238:CDS	55.0%
	GAACTCAGTCTGAGCGCCAT+GGG	-	chr4.1:61058667-61058686	None:intergenic	55.0%
	GACGAGCAGCACGCTTTCTT+GGG	-	chr4.1:61057834-61057853	None:intergenic	55.0%
	GCGCTCAGACTGAGTTCGAT+AGG	+	chr4.1:61058670-61058689	MS.gene68238:CDS	55.0%
	GGCTATGTGAAAACTCCCCG+TGG	+	chr4.1:61058051-61058070	MS.gene68238:CDS	55.0%
	TGACGAGCAGCACGCTTTCT+TGG	-	chr4.1:61057835-61057854	None:intergenic	55.0%
	TGGTACCATCGCACAGAAGG+TGG	+	chr4.1:61058344-61058363	MS.gene68238:CDS	55.0%
!	GCTGTGTTGGTCCCAAGAAG+AGG	+	chr4.1:61058772-61058791	MS.gene68238:CDS	55.0%
!	GGCTTGGTTGGGTCATCCTT+AGG	-	chr4.1:61057880-61057899	None:intergenic	55.0%
!!	GTTAGCTTGGGTGGCTTGGT+TGG	-	chr4.1:61057892-61057911	None:intergenic	55.0%
!!!	AGCGTCGGTTTTACACGGAC+TGG	+	chr4.1:61058124-61058143	MS.gene68238:CDS	55.0%
	CGAACTCAGTCTGAGCGCCA+TGG	-	chr4.1:61058668-61058687	None:intergenic	60.0%
	CGGTGGTACCATCGCACAGA+AGG	+	chr4.1:61058341-61058360	MS.gene68238:CDS	60.0%
!	AAGCGTGCTGCTCGTCACAG+AGG	+	chr4.1:61057838-61057857	MS.gene68238:CDS	60.0%
!	GGCAGTTAGCTTGGGTGGCT+TGG	-	chr4.1:61057896-61057915	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	61057781	61058941	61057781	ID=MS.gene68238
chr4.1	mRNA	61057781	61058941	61057781	ID=MS.gene68238.t1;Parent=MS.gene68238
chr4.1	exon	61057781	61058941	61057781	ID=MS.gene68238.t1.exon1;Parent=MS.gene68238.t1
chr4.1	CDS	61057781	61058941	61057781	ID=cds.MS.gene68238.t1;Parent=MS.gene68238.t1

Gene Sequence

>MS.gene68238

ATGTCTCACAGGAAGTTCGAGCACCCAAGACACAGTTCTTTGGGATTTCTCCCAAGAAAGCGTGCTGCTCGTCACAGAGGAAAAGTGAAGGCTTTCCCTAAGGATGACCCAACCAAGCCACCCAAGCTAACTGCCTTCTTGGGTTACAAGGTTGGTATGACCCACATTGTCAGAGAAGTTGAGAAGCCAGGATCCAAGCTTCACAAGAAGGAGACTTGTGAGGCCGTGACAATCATTGAGACCCCTCCTATGGTTGTTGTCGGTGTTGTGGGCTATGTGAAAACTCCCCGTGGTCTCCGAACATTGAACACTGTCTGGACTCCGCATTTAAGCGAGGAAATTAAGCGTCGGTTTTACACGGACTGGTGCAAGTCCATGCAGAAGGCTTTCCGCAATTACTCAAAGCAGTATAAAAGTGATGAGGGGAAGAAAAACATTCAGACCCAGCTTGAGAAACTGAAGAAGTATGCAACTGTTATCCGTGTGTTGGCTCACACTCAGATCAGGAAAATGAAGGGTTTGAAGCAGAAGAAAGCCCATATCATGGAAATTCAAGTTAACGGTGGTACCATCGCACAGAAGGTGGACTTTGCATACAGTTTCTTTGAGAAGCAGGTTCCTATCGATGCTGTGTTCCAGAAGGATGAAATGATTGACGTCATTGGAGTGACCAAGGGTAAGGGTTATGAAGGTGTTGTTACTCGTTGGGGTGTTACTCGTCTTCCTCGTAAGACTCACAGGGGTTTAAGGAAGGTTGCATGTATTGGTGCTTGGCATCCTGCTAGAGTTTCTTTCACTGTTGCAAGAACTGGTCAGAACGGATACCATCACAGAACTGAGCTGAACAAGAAAATTTACAAGCTCGGCAAAGTTGGAGAGGAGACCCATGGCGCTCAGACTGAGTTCGATAGGACTGAGAAAGACATTACACCTATGGGTGGTTTCCCACACTACGGTATTGTCAAGGAAGATTTTCTGATGATCAAGGGAGGCTGTGTTGGTCCCAAGAAGAGGGTTATTACTCTGCGCCAGTCCCTTCTTAAGCAGACTTCTCGTCTTGCTCTTGAGGATATCAAACTCAAGTTTATCGATACCTCTTCCAAGTTTGGACGTGGTCGTTTCCAGACAACATCAGAGAAGCAAAAACGCCTCAAAGCTTAA

Protein sequence

>MS.gene68238.t1

MSHRKFEHPRHSSLGFLPRKRAARHRGKVKAFPKDDPTKPPKLTAFLGYKVGMTHIVREVEKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRTLNTVWTPHLSEEIKRRFYTDWCKSMQKAFRNYSKQYKSDEGKKNIQTQLEKLKKYATVIRVLAHTQIRKMKGLKQKKAHIMEIQVNGGTIAQKVDFAYSFFEKQVPIDAVFQKDEMIDVIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARTGQNGYHHRTELNKKIYKLGKVGEETHGAQTEFDRTEKDITPMGGFPHYGIVKEDFLMIKGGCVGPKKRVITLRQSLLKQTSRLALEDIKLKFIDTSSKFGRGRFQTTSEKQKRLKA