Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016307.t1 | XP_013445249.1 | 94.2 | 154 | 9 | 0 | 1 | 154 | 1 | 154 | 2.00E-81 | 311.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016307.t1 | Q9SSK5 | 37.3 | 153 | 92 | 4 | 3 | 152 | 7 | 158 | 1.9e-19 | 97.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016307.t1 | I3T217 | 94.2 | 154 | 9 | 0 | 1 | 154 | 1 | 154 | 1.5e-81 | 311.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016307.t1 | MTR_8g045735 | 94.156 | 154 | 9 | 0 | 1 | 154 | 1 | 154 | 3.89e-107 | 302 |
MS.gene016307.t1 | MTR_8g045695 | 89.103 | 156 | 17 | 0 | 1 | 156 | 1 | 156 | 7.40e-103 | 291 |
MS.gene016307.t1 | MTR_8g045665 | 84.615 | 156 | 24 | 0 | 1 | 156 | 1 | 156 | 3.78e-96 | 274 |
MS.gene016307.t1 | MTR_8g045640 | 82.051 | 156 | 28 | 0 | 1 | 156 | 1 | 156 | 1.82e-92 | 265 |
MS.gene016307.t1 | MTR_8g045560 | 80.769 | 156 | 30 | 0 | 1 | 156 | 1 | 156 | 2.64e-91 | 262 |
MS.gene016307.t1 | MTR_8g045520 | 73.885 | 157 | 40 | 1 | 1 | 156 | 1 | 157 | 1.43e-83 | 243 |
MS.gene016307.t1 | MTR_8g045490 | 70.701 | 157 | 44 | 2 | 1 | 156 | 1 | 156 | 1.19e-79 | 233 |
MS.gene016307.t1 | MTR_8g045400 | 70.064 | 157 | 45 | 2 | 1 | 156 | 1 | 156 | 2.82e-78 | 229 |
MS.gene016307.t1 | MTR_8g045570 | 67.763 | 152 | 48 | 1 | 1 | 151 | 1 | 152 | 1.03e-75 | 223 |
MS.gene016307.t1 | MTR_8g045555 | 67.105 | 152 | 49 | 1 | 1 | 151 | 1 | 152 | 3.38e-74 | 219 |
MS.gene016307.t1 | MTR_8g045300 | 64.744 | 156 | 54 | 1 | 1 | 155 | 1 | 156 | 1.07e-73 | 218 |
MS.gene016307.t1 | MTR_1g030810 | 41.830 | 153 | 85 | 3 | 1 | 150 | 1 | 152 | 1.96e-38 | 128 |
MS.gene016307.t1 | MTR_1g030820 | 38.562 | 153 | 90 | 3 | 1 | 150 | 1 | 152 | 1.31e-36 | 124 |
MS.gene016307.t1 | MTR_1g030840 | 37.821 | 156 | 88 | 5 | 1 | 148 | 1 | 155 | 1.40e-27 | 101 |
MS.gene016307.t1 | MTR_8g012550 | 33.333 | 150 | 96 | 4 | 6 | 153 | 8 | 155 | 2.48e-24 | 92.4 |
MS.gene016307.t1 | MTR_1g031640 | 37.162 | 148 | 83 | 6 | 7 | 151 | 7 | 147 | 5.51e-21 | 83.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016307.t1 | AT5G28010 | 35.948 | 153 | 94 | 4 | 3 | 152 | 15 | 166 | 5.25e-25 | 94.7 |
MS.gene016307.t1 | AT5G28010 | 35.948 | 153 | 94 | 4 | 3 | 152 | 15 | 166 | 5.25e-25 | 94.7 |
MS.gene016307.t1 | AT1G70890 | 37.255 | 153 | 92 | 4 | 3 | 152 | 7 | 158 | 6.61e-24 | 91.7 |
MS.gene016307.t1 | AT1G70840 | 35.948 | 153 | 94 | 4 | 3 | 152 | 20 | 171 | 2.28e-23 | 90.5 |
MS.gene016307.t1 | AT1G70830 | 37.179 | 156 | 88 | 5 | 3 | 152 | 22 | 173 | 3.75e-23 | 90.1 |
MS.gene016307.t1 | AT1G70830 | 36.943 | 157 | 89 | 5 | 3 | 153 | 22 | 174 | 5.02e-23 | 90.5 |
MS.gene016307.t1 | AT1G70830 | 36.943 | 157 | 89 | 5 | 3 | 153 | 22 | 174 | 2.76e-22 | 89.7 |
MS.gene016307.t1 | AT1G70830 | 36.943 | 157 | 89 | 5 | 3 | 153 | 22 | 174 | 5.40e-22 | 90.1 |
MS.gene016307.t1 | AT1G70830 | 37.179 | 156 | 88 | 5 | 3 | 152 | 184 | 335 | 1.33e-21 | 89.4 |
MS.gene016307.t1 | AT1G70830 | 37.179 | 156 | 88 | 5 | 3 | 152 | 137 | 288 | 5.51e-22 | 89.4 |
MS.gene016307.t1 | AT1G70830 | 36.082 | 97 | 60 | 2 | 59 | 153 | 31 | 127 | 4.31e-12 | 62.8 |
MS.gene016307.t1 | AT5G28000 | 33.333 | 153 | 98 | 4 | 3 | 152 | 13 | 164 | 8.32e-22 | 86.3 |
MS.gene016307.t1 | AT1G70850 | 35.065 | 154 | 90 | 5 | 3 | 150 | 9 | 158 | 7.07e-21 | 85.5 |
MS.gene016307.t1 | AT1G70850 | 35.294 | 153 | 89 | 5 | 3 | 149 | 9 | 157 | 1.63e-20 | 85.9 |
MS.gene016307.t1 | AT1G70850 | 36.301 | 146 | 83 | 5 | 13 | 152 | 175 | 316 | 7.22e-20 | 84.3 |
MS.gene016307.t1 | AT1G70850 | 35.294 | 153 | 89 | 5 | 3 | 149 | 9 | 157 | 1.63e-20 | 85.9 |
MS.gene016307.t1 | AT1G70850 | 36.301 | 146 | 83 | 5 | 13 | 152 | 175 | 316 | 7.22e-20 | 84.3 |
MS.gene016307.t1 | AT1G70870 | 43.750 | 96 | 52 | 2 | 56 | 150 | 44 | 138 | 7.29e-19 | 78.2 |
MS.gene016307.t1 | AT1G14930 | 28.302 | 159 | 106 | 5 | 1 | 155 | 1 | 155 | 3.49e-18 | 76.6 |
MS.gene016307.t1 | AT4G23670 | 31.875 | 160 | 91 | 6 | 1 | 151 | 1 | 151 | 6.51e-18 | 75.9 |
MS.gene016307.t1 | AT2G01520 | 28.387 | 155 | 103 | 5 | 1 | 151 | 1 | 151 | 3.79e-17 | 73.9 |
MS.gene016307.t1 | AT1G24020 | 30.921 | 152 | 102 | 3 | 1 | 150 | 1 | 151 | 5.71e-17 | 73.6 |
MS.gene016307.t1 | AT1G24020 | 30.921 | 152 | 102 | 3 | 1 | 150 | 1 | 151 | 5.71e-17 | 73.6 |
MS.gene016307.t1 | AT4G14060 | 29.032 | 155 | 102 | 5 | 1 | 151 | 1 | 151 | 2.02e-16 | 72.0 |
MS.gene016307.t1 | AT2G01530 | 29.677 | 155 | 101 | 5 | 1 | 151 | 1 | 151 | 2.22e-16 | 72.0 |
MS.gene016307.t1 | AT1G23120 | 27.660 | 141 | 96 | 4 | 10 | 149 | 10 | 145 | 3.23e-15 | 68.9 |
MS.gene016307.t1 | AT1G70880 | 29.412 | 153 | 104 | 4 | 3 | 152 | 8 | 159 | 3.79e-15 | 68.9 |
MS.gene016307.t1 | AT1G23120 | 27.660 | 141 | 96 | 4 | 10 | 149 | 60 | 195 | 8.76e-15 | 68.9 |
MS.gene016307.t1 | AT1G14940 | 27.044 | 159 | 108 | 5 | 1 | 155 | 1 | 155 | 9.63e-15 | 67.8 |
MS.gene016307.t1 | AT4G23680 | 27.922 | 154 | 103 | 5 | 1 | 150 | 1 | 150 | 1.28e-14 | 67.4 |
MS.gene016307.t1 | AT1G14950 | 26.415 | 159 | 109 | 5 | 1 | 155 | 1 | 155 | 5.81e-14 | 65.9 |
MS.gene016307.t1 | AT1G30990 | 27.152 | 151 | 105 | 5 | 1 | 149 | 1 | 148 | 1.90e-13 | 64.3 |
MS.gene016307.t1 | AT3G26460 | 28.387 | 155 | 104 | 4 | 1 | 151 | 1 | 152 | 1.07e-12 | 62.4 |
MS.gene016307.t1 | AT1G14960 | 24.516 | 155 | 113 | 4 | 1 | 153 | 1 | 153 | 1.57e-11 | 59.3 |
Find 30 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGATGACCATCAATATCTT+TGG | 0.335693 | 8.2:-56174573 | None:intergenic |
AAGATCACTTTCAAGCTGTT+TGG | 0.356858 | 8.2:+56174395 | MS.gene016307:CDS |
ATGGAAATTCTGCTGTTAGA+TGG | 0.411619 | 8.2:+56174477 | MS.gene016307:CDS |
AGGTAGTCCATCCAGCCATT+TGG | 0.456227 | 8.2:-56174539 | None:intergenic |
ATCACTTTCAAGCTGTTTGG+TGG | 0.460728 | 8.2:+56174398 | MS.gene016307:CDS |
AAAGGAACCAAAGATATTGA+TGG | 0.467555 | 8.2:+56174566 | MS.gene016307:CDS |
GGTAAACTTATCACTGAACT+TGG | 0.495374 | 8.2:+56172840 | MS.gene016307:CDS |
AGATTGGCATCACACTGATT+CGG | 0.509801 | 8.2:+56172968 | MS.gene016307:CDS |
TATCTTTGGTTCCTTTGCTA+AGG | 0.518303 | 8.2:-56174559 | None:intergenic |
TAAACACTGGACTTATGTCA+TGG | 0.531165 | 8.2:+56172992 | MS.gene016307:CDS |
AGCTTCATGAAGGAGAAGAT+TGG | 0.532439 | 8.2:+56172952 | MS.gene016307:CDS |
GAAGTGCTTAACAAGGCTGA+TGG | 0.573383 | 8.2:+56174458 | MS.gene016307:CDS |
CATCATACTAAGCTTCATGA+AGG | 0.577072 | 8.2:+56172942 | MS.gene016307:CDS |
ATGTTGATACTCCAAATGGC+TGG | 0.578150 | 8.2:+56174528 | MS.gene016307:CDS |
ATTGATGGTCATCTTGTCAA+GGG | 0.586933 | 8.2:+56174581 | MS.gene016307:CDS |
TGATACTCCAAATGGCTGGA+TGG | 0.587093 | 8.2:+56174532 | MS.gene016307:CDS |
TATTGATGGTCATCTTGTCA+AGG | 0.589389 | 8.2:+56174580 | MS.gene016307:CDS |
AAACACTGGACTTATGTCAT+GGG | 0.597721 | 8.2:+56172993 | MS.gene016307:CDS |
ACACTGATTCGGTTAAACAC+TGG | 0.614381 | 8.2:+56172979 | MS.gene016307:CDS |
GAGGATGTTGATACTCCAAA+TGG | 0.616840 | 8.2:+56174524 | MS.gene016307:CDS |
GTAAACTTATCACTGAACTT+GGG | 0.617151 | 8.2:+56172841 | MS.gene016307:CDS |
TGGTACACACATGCAATGAG+AGG | 0.624271 | 8.2:+56174345 | MS.gene016307:CDS |
TATCATAACAACAGATGGTG+TGG | 0.633773 | 8.2:+56174325 | MS.gene016307:intron |
CATCTTAGAAGTGCTTAACA+AGG | 0.644958 | 8.2:+56174451 | MS.gene016307:CDS |
TTGATGGTCATCTTGTCAAG+GGG | 0.646397 | 8.2:+56174582 | MS.gene016307:CDS |
TGGATGGACTACCTTAGCAA+AGG | 0.650698 | 8.2:+56174548 | MS.gene016307:CDS |
GAACTTGGGATCAAAACACC+CGG | 0.651017 | 8.2:+56172855 | MS.gene016307:CDS |
TGATGGTCATCTTGTCAAGG+GGG | 0.696400 | 8.2:+56174583 | MS.gene016307:CDS |
TGATTATGAGAAGAACAGTG+AGG | 0.735998 | 8.2:+56174505 | MS.gene016307:CDS |
GGTACACACATGCAATGAGA+GGG | 0.748427 | 8.2:+56174346 | MS.gene016307:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTATTAATAAACGTATTA+TGG | - | chr8.2:56173360-56173379 | None:intergenic | 10.0% |
!! | TTAAAGTAATATTGAAAATA+AGG | - | chr8.2:56174268-56174287 | None:intergenic | 10.0% |
!!! | AAAATGTTTTTTATTGTTTT+TGG | + | chr8.2:56174289-56174308 | MS.gene016307:intron | 10.0% |
!! | AATGTTGAATATTTGAAAAT+GGG | + | chr8.2:56173407-56173426 | MS.gene016307:intron | 15.0% |
!! | ACTAATTAAGGATTTAAAAA+AGG | + | chr8.2:56174113-56174132 | MS.gene016307:intron | 15.0% |
!! | ATTATAAATGAAGTCAATAT+AGG | - | chr8.2:56173275-56173294 | None:intergenic | 15.0% |
!! | GGGTAAAATTAAATAAAAAA+AGG | + | chr8.2:56173427-56173446 | MS.gene016307:intron | 15.0% |
!! | TTTCACTTGTAAAAAAAAAA+AGG | - | chr8.2:56174009-56174028 | None:intergenic | 15.0% |
!!! | AAGAAAAATTATACTTTTCA+AGG | + | chr8.2:56173151-56173170 | MS.gene016307:intron | 15.0% |
!!! | TAAAATAATGTTTCTACTTT+TGG | + | chr8.2:56174204-56174223 | MS.gene016307:intron | 15.0% |
!!! | TATAAAAGTCAAACTTTTAT+CGG | + | chr8.2:56173917-56173936 | MS.gene016307:intron | 15.0% |
!! | ATCAAAAATCAAATATCACA+AGG | - | chr8.2:56173888-56173907 | None:intergenic | 20.0% |
!! | ATCATAAAAACCTAATGATA+AGG | - | chr8.2:56174040-56174059 | None:intergenic | 20.0% |
!! | ATTTATCTTTCTAGATCTAA+CGG | + | chr8.2:56173578-56173597 | MS.gene016307:intron | 20.0% |
!! | GAATGTTGAATATTTGAAAA+TGG | + | chr8.2:56173406-56173425 | MS.gene016307:intron | 20.0% |
!!! | GTTTCTTAACAAATGTTTTA+AGG | + | chr8.2:56174226-56174245 | MS.gene016307:intron | 20.0% |
!!! | TGGTGAAACTAATATTTTTA+AGG | + | chr8.2:56174065-56174084 | MS.gene016307:intron | 20.0% |
!!! | TTAGGTTTTTATGATTTCTT+TGG | + | chr8.2:56174045-56174064 | MS.gene016307:intron | 20.0% |
! | AATAATGCATCCTTATCATT+AGG | + | chr8.2:56174027-56174046 | MS.gene016307:intron | 25.0% |
! | ATTACATACAACTCATATAG+TGG | - | chr8.2:56173521-56173540 | None:intergenic | 25.0% |
! | ATTGCCTTTATAAGTTCTTT+AGG | - | chr8.2:56173189-56173208 | None:intergenic | 25.0% |
! | TTCTTAGACAAATTGTAGTA+CGG | - | chr8.2:56173136-56173155 | None:intergenic | 25.0% |
!!! | TACTTTTCAAGGCAATAATA+TGG | + | chr8.2:56173162-56173181 | MS.gene016307:intron | 25.0% |
!!! | TATTTGATTTTTGATCCTTG+TGG | + | chr8.2:56173893-56173912 | MS.gene016307:intron | 25.0% |
AAAGGAACCAAAGATATTGA+TGG | + | chr8.2:56174566-56174585 | MS.gene016307:CDS | 30.0% | |
AAGATGACCATCAATATCTT+TGG | - | chr8.2:56174576-56174595 | None:intergenic | 30.0% | |
AATCAAACAAGATGATGACT+TGG | - | chr8.2:56173050-56173069 | None:intergenic | 30.0% | |
CATTGTATGGATTTATGCTT+AGG | + | chr8.2:56173486-56173505 | MS.gene016307:intron | 30.0% | |
GCAATGGATAAGTAATTACA+TGG | + | chr8.2:56173703-56173722 | MS.gene016307:intron | 30.0% | |
GTAAACTTATCACTGAACTT+GGG | + | chr8.2:56172841-56172860 | MS.gene016307:CDS | 30.0% | |
TATGCTAACAAGTGTCTTTA+GGG | + | chr8.2:56174089-56174108 | MS.gene016307:intron | 30.0% | |
TGGACCTAAAGAACTTATAA+AGG | + | chr8.2:56173182-56173201 | MS.gene016307:intron | 30.0% | |
TTATGCTAACAAGTGTCTTT+AGG | + | chr8.2:56174088-56174107 | MS.gene016307:intron | 30.0% | |
! | AGCGAAACTTGTTCAATTTA+CGG | - | chr8.2:56173806-56173825 | None:intergenic | 30.0% |
! | TAGTTTGAAGAACTTTTCAC+CGG | - | chr8.2:56172877-56172896 | None:intergenic | 30.0% |
! | TGATTTTAAACTATCCTGTG+AGG | + | chr8.2:56173767-56173786 | MS.gene016307:intron | 30.0% |
!! | AATTTTTCGTTTTAGCGCAA+TGG | + | chr8.2:56173687-56173706 | MS.gene016307:intron | 30.0% |
!! | GTTGTATGTAATAGTTCTAG+TGG | + | chr8.2:56173529-56173548 | MS.gene016307:intron | 30.0% |
!! | GTTTGACTTTTATAACCACA+AGG | - | chr8.2:56173911-56173930 | None:intergenic | 30.0% |
AAACACTGGACTTATGTCAT+GGG | + | chr8.2:56172993-56173012 | MS.gene016307:CDS | 35.0% | |
AACAAGTTTCGCTATCTTGT+CGG | + | chr8.2:56173813-56173832 | MS.gene016307:intron | 35.0% | |
AAGATCACTTTCAAGCTGTT+TGG | + | chr8.2:56174395-56174414 | MS.gene016307:CDS | 35.0% | |
ACCATCTGTTGTTATGATAG+AGG | - | chr8.2:56174324-56174343 | None:intergenic | 35.0% | |
ATGGAAATTCTGCTGTTAGA+TGG | + | chr8.2:56174477-56174496 | MS.gene016307:CDS | 35.0% | |
CATCATACTAAGCTTCATGA+AGG | + | chr8.2:56172942-56172961 | MS.gene016307:CDS | 35.0% | |
GGTAAACTTATCACTGAACT+TGG | + | chr8.2:56172840-56172859 | MS.gene016307:CDS | 35.0% | |
TAAACACTGGACTTATGTCA+TGG | + | chr8.2:56172992-56173011 | MS.gene016307:CDS | 35.0% | |
TAATTACATGGCACGTATCT+AGG | + | chr8.2:56173715-56173734 | MS.gene016307:intron | 35.0% | |
TATCATAACAACAGATGGTG+TGG | + | chr8.2:56174325-56174344 | MS.gene016307:intron | 35.0% | |
TCCTCTATCATAACAACAGA+TGG | + | chr8.2:56174320-56174339 | MS.gene016307:intron | 35.0% | |
TGATTATGAGAAGAACAGTG+AGG | + | chr8.2:56174505-56174524 | MS.gene016307:CDS | 35.0% | |
! | AGTTTGAAGAACTTTTCACC+GGG | - | chr8.2:56172876-56172895 | None:intergenic | 35.0% |
! | ATTGATGGTCATCTTGTCAA+GGG | + | chr8.2:56174581-56174600 | MS.gene016307:CDS | 35.0% |
! | GTTTAACTTTGTAACCTCAC+AGG | - | chr8.2:56173784-56173803 | None:intergenic | 35.0% |
! | TATCTTTGGTTCCTTTGCTA+AGG | - | chr8.2:56174562-56174581 | None:intergenic | 35.0% |
! | TATTGATGGTCATCTTGTCA+AGG | + | chr8.2:56174580-56174599 | MS.gene016307:CDS | 35.0% |
!! | CATCTTAGAAGTGCTTAACA+AGG | + | chr8.2:56174451-56174470 | MS.gene016307:CDS | 35.0% |
!! | TGCTACTTTAGTGCATTGTA+TGG | + | chr8.2:56173473-56173492 | MS.gene016307:intron | 35.0% |
!! | TGTCTTTAGGGCACTAATTA+AGG | + | chr8.2:56174101-56174120 | MS.gene016307:intron | 35.0% |
AATTCAAGGTCGAGTTCAAG+TGG | + | chr8.2:56173638-56173657 | MS.gene016307:intron | 40.0% | |
AGCTTCATGAAGGAGAAGAT+TGG | + | chr8.2:56172952-56172971 | MS.gene016307:CDS | 40.0% | |
AGTTCAAGTGGATGATTGAG+GGG | + | chr8.2:56173650-56173669 | MS.gene016307:intron | 40.0% | |
ATCACTTTCAAGCTGTTTGG+TGG | + | chr8.2:56174398-56174417 | MS.gene016307:CDS | 40.0% | |
ATGTTGATACTCCAAATGGC+TGG | + | chr8.2:56174528-56174547 | MS.gene016307:CDS | 40.0% | |
CCAAGAGATGTTGTGCTTTA+TGG | + | chr8.2:56173846-56173865 | MS.gene016307:intron | 40.0% | |
CCATAAAGCACAACATCTCT+TGG | - | chr8.2:56173849-56173868 | None:intergenic | 40.0% | |
GAGGATGTTGATACTCCAAA+TGG | + | chr8.2:56174524-56174543 | MS.gene016307:CDS | 40.0% | |
GAGTTCAAGTGGATGATTGA+GGG | + | chr8.2:56173649-56173668 | MS.gene016307:intron | 40.0% | |
! | AGATTGGCATCACACTGATT+CGG | + | chr8.2:56172968-56172987 | MS.gene016307:CDS | 40.0% |
! | TTGATGGTCATCTTGTCAAG+GGG | + | chr8.2:56174582-56174601 | MS.gene016307:CDS | 40.0% |
!! | ACACTGATTCGGTTAAACAC+TGG | + | chr8.2:56172979-56172998 | MS.gene016307:CDS | 40.0% |
AACTCATGTGGGGGAATTCA+AGG | + | chr8.2:56173624-56173643 | MS.gene016307:intron | 45.0% | |
CGAGTTCAAGTGGATGATTG+AGG | + | chr8.2:56173648-56173667 | MS.gene016307:intron | 45.0% | |
GAACTTGGGATCAAAACACC+CGG | + | chr8.2:56172855-56172874 | MS.gene016307:CDS | 45.0% | |
GGTACACACATGCAATGAGA+GGG | + | chr8.2:56174346-56174365 | MS.gene016307:CDS | 45.0% | |
TCATCTTGTCAAGGGGGAAA+AGG | + | chr8.2:56174589-56174608 | MS.gene016307:CDS | 45.0% | |
TGATACTCCAAATGGCTGGA+TGG | + | chr8.2:56174532-56174551 | MS.gene016307:CDS | 45.0% | |
TGATGGTCATCTTGTCAAGG+GGG | + | chr8.2:56174583-56174602 | MS.gene016307:CDS | 45.0% | |
TGGTACACACATGCAATGAG+AGG | + | chr8.2:56174345-56174364 | MS.gene016307:CDS | 45.0% | |
! | ATTGAGGGGTAGTCTTGACT+CGG | + | chr8.2:56173664-56173683 | MS.gene016307:intron | 45.0% |
! | GAAGTGCTTAACAAGGCTGA+TGG | + | chr8.2:56174458-56174477 | MS.gene016307:CDS | 45.0% |
!! | TGGATGGACTACCTTAGCAA+AGG | + | chr8.2:56174548-56174567 | MS.gene016307:CDS | 45.0% |
AGGTAGTCCATCCAGCCATT+TGG | - | chr8.2:56174542-56174561 | None:intergenic | 50.0% | |
ATTCCCCCACATGAGTTGCT+CGG | - | chr8.2:56173621-56173640 | None:intergenic | 50.0% | |
CTATGCCGAGCAACTCATGT+GGG | + | chr8.2:56173613-56173632 | MS.gene016307:intron | 50.0% | |
TATGCCGAGCAACTCATGTG+GGG | + | chr8.2:56173614-56173633 | MS.gene016307:intron | 50.0% | |
ATGCCGAGCAACTCATGTGG+GGG | + | chr8.2:56173615-56173634 | MS.gene016307:intron | 55.0% | |
CATGAGTTGCTCGGCATAGC+AGG | - | chr8.2:56173612-56173631 | None:intergenic | 55.0% | |
GCTATGCCGAGCAACTCATG+TGG | + | chr8.2:56173612-56173631 | MS.gene016307:intron | 55.0% | |
TTGCTCGGCATAGCAGGTGT+GGG | - | chr8.2:56173606-56173625 | None:intergenic | 55.0% | |
GTTGCTCGGCATAGCAGGTG+TGG | - | chr8.2:56173607-56173626 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 56172828 | 56174622 | 56172828 | ID=MS.gene016307 |
chr8.2 | mRNA | 56172828 | 56174622 | 56172828 | ID=MS.gene016307.t1;Parent=MS.gene016307 |
chr8.2 | exon | 56172828 | 56173014 | 56172828 | ID=MS.gene016307.t1.exon1;Parent=MS.gene016307.t1 |
chr8.2 | CDS | 56172828 | 56173014 | 56172828 | ID=cds.MS.gene016307.t1;Parent=MS.gene016307.t1 |
chr8.2 | exon | 56174339 | 56174622 | 56174339 | ID=MS.gene016307.t1.exon2;Parent=MS.gene016307.t1 |
chr8.2 | CDS | 56174339 | 56174622 | 56174339 | ID=cds.MS.gene016307.t1;Parent=MS.gene016307.t1 |
Gene Sequence |
Protein sequence |