Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74358.t1 | XP_003628200.1 | 83 | 165 | 19 | 1 | 1 | 165 | 1 | 156 | 8.20E-73 | 283.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74358.t1 | Q9SSK5 | 34.2 | 158 | 92 | 5 | 3 | 158 | 7 | 154 | 8.5e-18 | 91.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74358.t1 | G7L7T5 | 83.0 | 165 | 19 | 1 | 1 | 165 | 1 | 156 | 5.9e-73 | 283.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene04932 | MS.gene74358 | 0.804769 | 1.84E-49 | -1.69E-46 |
MS.gene050082 | MS.gene74358 | 0.817455 | 3.27E-52 | -1.69E-46 |
MS.gene050170 | MS.gene74358 | -0.830593 | 2.69E-55 | -1.69E-46 |
MS.gene050326 | MS.gene74358 | 0.815195 | 1.05E-51 | -1.69E-46 |
MS.gene050328 | MS.gene74358 | 0.810985 | 8.78E-51 | -1.69E-46 |
MS.gene050338 | MS.gene74358 | 0.850521 | 1.61E-60 | -1.69E-46 |
MS.gene050496 | MS.gene74358 | -0.804587 | 2.01E-49 | -1.69E-46 |
MS.gene051422 | MS.gene74358 | 0.847818 | 9.09E-60 | -1.69E-46 |
MS.gene051651 | MS.gene74358 | 0.830048 | 3.66E-55 | -1.69E-46 |
MS.gene052606 | MS.gene74358 | 0.803295 | 3.73E-49 | -1.69E-46 |
MS.gene053097 | MS.gene74358 | 0.802364 | 5.81E-49 | -1.69E-46 |
MS.gene054614 | MS.gene74358 | 0.80193 | 7.14E-49 | -1.69E-46 |
MS.gene054706 | MS.gene74358 | 0.808323 | 3.28E-50 | -1.69E-46 |
MS.gene05470 | MS.gene74358 | -0.801607 | 8.31E-49 | -1.69E-46 |
MS.gene055158 | MS.gene74358 | 0.819835 | 9.43E-53 | -1.69E-46 |
MS.gene055251 | MS.gene74358 | 0.828279 | 9.82E-55 | -1.69E-46 |
MS.gene055729 | MS.gene74358 | 0.819235 | 1.29E-52 | -1.69E-46 |
MS.gene055730 | MS.gene74358 | 0.82334 | 1.46E-53 | -1.69E-46 |
MS.gene055731 | MS.gene74358 | 0.805385 | 1.37E-49 | -1.69E-46 |
MS.gene05589 | MS.gene74358 | -0.830111 | 3.53E-55 | -1.69E-46 |
MS.gene056387 | MS.gene74358 | -0.819236 | 1.29E-52 | -1.69E-46 |
MS.gene056504 | MS.gene74358 | -0.808707 | 2.71E-50 | -1.69E-46 |
MS.gene056694 | MS.gene74358 | 0.819329 | 1.23E-52 | -1.69E-46 |
MS.gene056697 | MS.gene74358 | 0.850436 | 1.70E-60 | -1.69E-46 |
MS.gene056856 | MS.gene74358 | 0.834941 | 2.24E-56 | -1.69E-46 |
MS.gene058067 | MS.gene74358 | 0.821282 | 4.39E-53 | -1.69E-46 |
MS.gene058268 | MS.gene74358 | 0.804855 | 1.77E-49 | -1.69E-46 |
MS.gene058334 | MS.gene74358 | 0.834443 | 2.99E-56 | -1.69E-46 |
MS.gene058382 | MS.gene74358 | 0.895727 | 7.28E-76 | -1.69E-46 |
MS.gene058838 | MS.gene74358 | -0.806705 | 7.22E-50 | -1.69E-46 |
MS.gene05926 | MS.gene74358 | 0.863694 | 2.07E-64 | -1.69E-46 |
MS.gene059685 | MS.gene74358 | 0.813342 | 2.69E-51 | -1.69E-46 |
MS.gene060405 | MS.gene74358 | 0.831538 | 1.58E-55 | -1.69E-46 |
MS.gene060593 | MS.gene74358 | 0.80088 | 1.17E-48 | -1.69E-46 |
MS.gene060823 | MS.gene74358 | 0.819174 | 1.33E-52 | -1.69E-46 |
MS.gene060982 | MS.gene74358 | -0.806883 | 6.63E-50 | -1.69E-46 |
MS.gene061044 | MS.gene74358 | 0.840883 | 6.65E-58 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74358.t1 | MTR_8g045490 | 83.030 | 165 | 19 | 1 | 1 | 165 | 1 | 156 | 9.94e-96 | 274 |
MS.gene74358.t1 | MTR_8g045520 | 72.892 | 166 | 35 | 2 | 1 | 165 | 1 | 157 | 1.67e-83 | 243 |
MS.gene74358.t1 | MTR_8g045400 | 69.880 | 166 | 39 | 3 | 1 | 165 | 1 | 156 | 2.74e-78 | 229 |
MS.gene74358.t1 | MTR_8g045570 | 68.323 | 161 | 42 | 1 | 1 | 161 | 1 | 152 | 5.06e-78 | 229 |
MS.gene74358.t1 | MTR_8g045555 | 66.460 | 161 | 45 | 1 | 1 | 161 | 1 | 152 | 6.05e-74 | 218 |
MS.gene74358.t1 | MTR_8g045695 | 66.049 | 162 | 45 | 2 | 1 | 162 | 1 | 152 | 6.40e-74 | 218 |
MS.gene74358.t1 | MTR_8g045300 | 63.030 | 165 | 51 | 2 | 1 | 164 | 1 | 156 | 1.39e-72 | 215 |
MS.gene74358.t1 | MTR_8g045735 | 62.963 | 162 | 50 | 2 | 1 | 162 | 1 | 152 | 2.14e-70 | 209 |
MS.gene74358.t1 | MTR_8g045665 | 62.346 | 162 | 51 | 2 | 1 | 162 | 1 | 152 | 4.19e-68 | 204 |
MS.gene74358.t1 | MTR_8g045640 | 61.728 | 162 | 52 | 2 | 1 | 162 | 1 | 152 | 3.47e-67 | 201 |
MS.gene74358.t1 | MTR_8g045560 | 60.494 | 162 | 54 | 2 | 1 | 162 | 1 | 152 | 3.26e-65 | 196 |
MS.gene74358.t1 | MTR_1g030820 | 37.037 | 162 | 90 | 3 | 1 | 160 | 1 | 152 | 2.54e-32 | 113 |
MS.gene74358.t1 | MTR_1g030810 | 37.654 | 162 | 89 | 3 | 1 | 160 | 1 | 152 | 5.66e-32 | 112 |
MS.gene74358.t1 | MTR_8g012550 | 32.258 | 155 | 93 | 4 | 6 | 159 | 8 | 151 | 4.43e-22 | 87.0 |
MS.gene74358.t1 | MTR_1g030840 | 32.121 | 165 | 95 | 5 | 1 | 158 | 1 | 155 | 6.20e-21 | 84.3 |
MS.gene74358.t1 | MTR_1g031640 | 33.758 | 157 | 86 | 6 | 7 | 161 | 7 | 147 | 1.97e-18 | 77.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74358.t1 | AT5G28010 | 33.544 | 158 | 93 | 4 | 3 | 158 | 15 | 162 | 3.28e-21 | 85.1 |
MS.gene74358.t1 | AT5G28010 | 33.544 | 158 | 93 | 4 | 3 | 158 | 15 | 162 | 3.28e-21 | 85.1 |
MS.gene74358.t1 | AT1G70890 | 34.177 | 158 | 92 | 5 | 3 | 158 | 7 | 154 | 9.58e-21 | 83.6 |
MS.gene74358.t1 | AT1G70870 | 42.268 | 97 | 55 | 1 | 64 | 160 | 43 | 138 | 6.43e-19 | 78.6 |
MS.gene74358.t1 | AT1G70830 | 31.646 | 158 | 96 | 4 | 3 | 158 | 22 | 169 | 3.24e-18 | 77.4 |
MS.gene74358.t1 | AT1G70830 | 31.646 | 158 | 96 | 4 | 3 | 158 | 22 | 169 | 6.36e-18 | 77.4 |
MS.gene74358.t1 | AT1G70840 | 29.747 | 158 | 99 | 4 | 3 | 158 | 20 | 167 | 1.10e-17 | 76.3 |
MS.gene74358.t1 | AT1G70830 | 31.646 | 158 | 96 | 4 | 3 | 158 | 22 | 169 | 2.03e-17 | 77.0 |
MS.gene74358.t1 | AT1G70830 | 31.646 | 158 | 96 | 4 | 3 | 158 | 22 | 169 | 3.47e-17 | 77.4 |
MS.gene74358.t1 | AT5G28000 | 29.747 | 158 | 99 | 4 | 3 | 158 | 13 | 160 | 2.61e-16 | 72.4 |
MS.gene74358.t1 | AT1G23120 | 29.605 | 152 | 93 | 4 | 7 | 158 | 7 | 144 | 8.21e-16 | 70.5 |
MS.gene74358.t1 | AT1G70850 | 29.747 | 158 | 99 | 4 | 3 | 158 | 9 | 156 | 8.68e-16 | 72.4 |
MS.gene74358.t1 | AT1G70850 | 29.747 | 158 | 99 | 4 | 3 | 158 | 9 | 156 | 1.49e-15 | 72.8 |
MS.gene74358.t1 | AT1G70850 | 29.730 | 148 | 92 | 4 | 13 | 158 | 175 | 312 | 2.23e-14 | 69.3 |
MS.gene74358.t1 | AT1G70850 | 29.747 | 158 | 99 | 4 | 3 | 158 | 9 | 156 | 1.49e-15 | 72.8 |
MS.gene74358.t1 | AT1G70850 | 29.730 | 148 | 92 | 4 | 13 | 158 | 175 | 312 | 2.23e-14 | 69.3 |
MS.gene74358.t1 | AT1G23120 | 38.462 | 91 | 55 | 1 | 68 | 158 | 105 | 194 | 1.99e-15 | 70.9 |
MS.gene74358.t1 | AT4G23670 | 30.864 | 162 | 100 | 3 | 1 | 161 | 1 | 151 | 2.53e-15 | 69.3 |
MS.gene74358.t1 | AT1G24020 | 32.927 | 164 | 101 | 4 | 1 | 164 | 1 | 155 | 1.32e-14 | 67.8 |
MS.gene74358.t1 | AT1G24020 | 32.927 | 164 | 101 | 4 | 1 | 164 | 1 | 155 | 1.32e-14 | 67.8 |
MS.gene74358.t1 | AT1G23130 | 26.752 | 157 | 104 | 3 | 3 | 158 | 10 | 156 | 2.22e-14 | 67.0 |
MS.gene74358.t1 | AT1G70880 | 27.215 | 158 | 103 | 3 | 3 | 158 | 8 | 155 | 2.58e-14 | 67.0 |
MS.gene74358.t1 | AT4G23680 | 29.012 | 162 | 103 | 3 | 1 | 161 | 1 | 151 | 2.27e-13 | 64.3 |
MS.gene74358.t1 | AT2G01520 | 29.630 | 162 | 102 | 4 | 1 | 161 | 1 | 151 | 2.83e-13 | 63.9 |
MS.gene74358.t1 | AT4G14060 | 31.481 | 162 | 99 | 4 | 1 | 161 | 1 | 151 | 1.30e-12 | 62.4 |
MS.gene74358.t1 | AT1G35260 | 27.273 | 154 | 99 | 5 | 7 | 158 | 6 | 148 | 2.06e-12 | 61.6 |
MS.gene74358.t1 | AT1G14930 | 30.588 | 170 | 92 | 6 | 1 | 162 | 1 | 152 | 3.02e-12 | 61.2 |
MS.gene74358.t1 | AT2G01530 | 29.630 | 162 | 102 | 4 | 1 | 161 | 1 | 151 | 6.66e-12 | 60.5 |
Find 26 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAAGGTTCTCTGGGGAATA+TGG | 0.306691 | 8.4:-55807888 | None:intergenic |
ATGGCACTGCTGCTGCTAAA+TGG | 0.310932 | 8.4:+55808469 | MS.gene74358:CDS |
CACCCTTATCAATGACTTCA+AGG | 0.380806 | 8.4:-55808446 | None:intergenic |
TTATAGAGCTATCTTTGCTT+TGG | 0.392094 | 8.4:-55808589 | None:intergenic |
TTCTAAGAAATGGTGCTCTC+TGG | 0.436928 | 8.4:+55807355 | None:intergenic |
CATCCTTGAAGTCATTGATA+AGG | 0.445764 | 8.4:+55808443 | MS.gene74358:CDS |
AAGTATTCCATGTAGCCATT+TGG | 0.448595 | 8.4:-55808531 | None:intergenic |
AACACTTATAAGCTCTTTGG+TGG | 0.457999 | 8.4:+55808387 | MS.gene74358:CDS |
AACTTCATGAAGGTGAAGAT+TGG | 0.478377 | 8.4:+55807488 | MS.gene74358:CDS |
GGTAAGCTCAGTACTGAAGT+TGG | 0.490802 | 8.4:+55807376 | MS.gene74358:CDS |
ATCCTTGAAGTCATTGATAA+GGG | 0.494628 | 8.4:+55808444 | MS.gene74358:CDS |
AGATATTGATGAGCACTATA+AGG | 0.500590 | 8.4:+55808410 | MS.gene74358:CDS |
GAACAGATTGTAGAACTTGT+CGG | 0.501167 | 8.4:-55807413 | None:intergenic |
TATTCCATGTAGCCATTTGG+AGG | 0.517921 | 8.4:-55808528 | None:intergenic |
AGATTGGCATCACACTGATT+CGG | 0.519723 | 8.4:+55807504 | MS.gene74358:CDS |
AATGGCTACATGGAATACTT+TGG | 0.525683 | 8.4:+55808534 | MS.gene74358:CDS |
TGACCCTCCAAATGGCTACA+TGG | 0.526835 | 8.4:+55808524 | MS.gene74358:CDS |
GAGGATATTGACCCTCCAAA+TGG | 0.540200 | 8.4:+55808516 | MS.gene74358:CDS |
TATGATGAACTCTTTCACAA+AGG | 0.552779 | 8.4:-55807462 | None:intergenic |
GAAGTCATTGATAAGGGTGA+TGG | 0.579318 | 8.4:+55808450 | MS.gene74358:CDS |
ATCATAATTCACAGATGGCA+AGG | 0.582682 | 8.4:+55808314 | MS.gene74358:intron |
CATCATACAAAACTTCATGA+AGG | 0.606616 | 8.4:+55807478 | MS.gene74358:CDS |
ATTCCATGTAGCCATTTGGA+GGG | 0.625101 | 8.4:-55808527 | None:intergenic |
AGATTGTAGAACTTGTCGGC+GGG | 0.646397 | 8.4:-55807409 | None:intergenic |
TGAATATGAAAAGATCAATG+AGG | 0.667026 | 8.4:+55808497 | MS.gene74358:CDS |
CAGATTGTAGAACTTGTCGG+CGG | 0.688816 | 8.4:-55807410 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGGAATAATAAATATTTATA+AGG | - | chr8.4:55808158-55808177 | None:intergenic | 10.0% |
!!! | ATAGTTTATTTGTTAAAAAA+TGG | + | chr8.4:55808223-55808242 | MS.gene74358:intron | 10.0% |
!!! | TAGTTTATTTGTTAAAAAAT+GGG | + | chr8.4:55808224-55808243 | MS.gene74358:intron | 10.0% |
!! | AAAAAAAATCAACAATCATT+TGG | + | chr8.4:55807914-55807933 | MS.gene74358:CDS | 15.0% |
!! | AAAAAAATCAACAATCATTT+GGG | + | chr8.4:55807915-55807934 | MS.gene74358:CDS | 15.0% |
!! | AATTAAATAAGATGATGATT+TGG | - | chr8.4:55807591-55807610 | None:intergenic | 15.0% |
!! | ACAAATAAAAATGAAAACTT+TGG | - | chr8.4:55808278-55808297 | None:intergenic | 15.0% |
!!! | TGTTGATTTTTTTTGTCATA+AGG | - | chr8.4:55807908-55807927 | None:intergenic | 20.0% |
! | AAAAACACTTATAAGCTCTT+TGG | + | chr8.4:55808384-55808403 | MS.gene74358:CDS | 25.0% |
! | AGATTATGAGATCTCAAAAA+TGG | + | chr8.4:55808011-55808030 | MS.gene74358:intron | 25.0% |
! | ATAAGAAAGAAACAAGTACA+TGG | + | chr8.4:55807695-55807714 | MS.gene74358:intron | 25.0% |
! | TGAATATGAAAAGATCAATG+AGG | + | chr8.4:55808497-55808516 | MS.gene74358:CDS | 25.0% |
! | TTGGGAAGAAAAAAAAATCA+GGG | - | chr8.4:55807778-55807797 | None:intergenic | 25.0% |
! | TTTGGGAAGAAAAAAAAATC+AGG | - | chr8.4:55807779-55807798 | None:intergenic | 25.0% |
!! | AACCACAGTTTTTCTTTATA+TGG | - | chr8.4:55808133-55808152 | None:intergenic | 25.0% |
!! | CTATCTTGAAAATGGTTTTT+GGG | - | chr8.4:55807796-55807815 | None:intergenic | 25.0% |
!! | TCTATCTTGAAAATGGTTTT+TGG | - | chr8.4:55807797-55807816 | None:intergenic | 25.0% |
AACATAGTCAAAAGTAGAAG+AGG | - | chr8.4:55807839-55807858 | None:intergenic | 30.0% | |
AGATATTGATGAGCACTATA+AGG | + | chr8.4:55808410-55808429 | MS.gene74358:CDS | 30.0% | |
AGCCATATAAAGAAAAACTG+TGG | + | chr8.4:55808128-55808147 | MS.gene74358:intron | 30.0% | |
ATCCTTGAAGTCATTGATAA+GGG | + | chr8.4:55808444-55808463 | MS.gene74358:CDS | 30.0% | |
CATCATACAAAACTTCATGA+AGG | + | chr8.4:55807478-55807497 | MS.gene74358:CDS | 30.0% | |
TACATTCTACAAACCAAACA+TGG | + | chr8.4:55807748-55807767 | MS.gene74358:intron | 30.0% | |
TATGATGAACTCTTTCACAA+AGG | - | chr8.4:55807465-55807484 | None:intergenic | 30.0% | |
TGGGAAGAAAAAAAAATCAG+GGG | - | chr8.4:55807777-55807796 | None:intergenic | 30.0% | |
TTATAGAGCTATCTTTGCTT+TGG | - | chr8.4:55808592-55808611 | None:intergenic | 30.0% | |
! | TGAAGCATCTATCTTGAAAA+TGG | - | chr8.4:55807804-55807823 | None:intergenic | 30.0% |
! | TTTTTGTCATAAGGTTCTCT+GGG | - | chr8.4:55807899-55807918 | None:intergenic | 30.0% |
!! | CTACTTTTGACTATGTTGAA+CGG | + | chr8.4:55807842-55807861 | MS.gene74358:intron | 30.0% |
!! | TACTTTTGACTATGTTGAAC+GGG | + | chr8.4:55807843-55807862 | MS.gene74358:intron | 30.0% |
!! | TGATGATTTGGTTATTGATC+AGG | - | chr8.4:55807579-55807598 | None:intergenic | 30.0% |
!!! | TTTTTTGTCATAAGGTTCTC+TGG | - | chr8.4:55807900-55807919 | None:intergenic | 30.0% |
AACACTTATAAGCTCTTTGG+TGG | + | chr8.4:55808387-55808406 | MS.gene74358:CDS | 35.0% | |
AACTTCATGAAGGTGAAGAT+TGG | + | chr8.4:55807488-55807507 | MS.gene74358:CDS | 35.0% | |
AAGTATTCCATGTAGCCATT+TGG | - | chr8.4:55808534-55808553 | None:intergenic | 35.0% | |
AATGGCTACATGGAATACTT+TGG | + | chr8.4:55808534-55808553 | MS.gene74358:CDS | 35.0% | |
ATCATAATTCACAGATGGCA+AGG | + | chr8.4:55808314-55808333 | MS.gene74358:intron | 35.0% | |
ATCTGTGAATTATGATGGCA+CGG | - | chr8.4:55808310-55808329 | None:intergenic | 35.0% | |
CATCCTTGAAGTCATTGATA+AGG | + | chr8.4:55808443-55808462 | MS.gene74358:CDS | 35.0% | |
GAACAGATTGTAGAACTTGT+CGG | - | chr8.4:55807416-55807435 | None:intergenic | 35.0% | |
TTGCCATCTGTGAATTATGA+TGG | - | chr8.4:55808315-55808334 | None:intergenic | 35.0% | |
! | TTTTGTCATAAGGTTCTCTG+GGG | - | chr8.4:55807898-55807917 | None:intergenic | 35.0% |
AAATCAGGGGTAACCATGTT+TGG | - | chr8.4:55807764-55807783 | None:intergenic | 40.0% | |
ATTCCATGTAGCCATTTGGA+GGG | - | chr8.4:55808530-55808549 | None:intergenic | 40.0% | |
CACCCTTATCAATGACTTCA+AGG | - | chr8.4:55808449-55808468 | None:intergenic | 40.0% | |
GAAGTCATTGATAAGGGTGA+TGG | + | chr8.4:55808450-55808469 | MS.gene74358:CDS | 40.0% | |
GTGCCATCATAATTCACAGA+TGG | + | chr8.4:55808309-55808328 | MS.gene74358:intron | 40.0% | |
TATTCCATGTAGCCATTTGG+AGG | - | chr8.4:55808531-55808550 | None:intergenic | 40.0% | |
TCTGTGAATTATGATGGCAC+GGG | - | chr8.4:55808309-55808328 | None:intergenic | 40.0% | |
! | AGATTGGCATCACACTGATT+CGG | + | chr8.4:55807504-55807523 | MS.gene74358:CDS | 40.0% |
! | ATAAGGTTCTCTGGGGAATA+TGG | - | chr8.4:55807891-55807910 | None:intergenic | 40.0% |
!! | ACACTGATTCGGTTAAACAC+TGG | + | chr8.4:55807515-55807534 | MS.gene74358:intron | 40.0% |
AAACACTGGACTTACGTCGT+AGG | + | chr8.4:55807529-55807548 | MS.gene74358:intron | 45.0% | |
AGATTGTAGAACTTGTCGGC+GGG | - | chr8.4:55807412-55807431 | None:intergenic | 45.0% | |
CAGATTGTAGAACTTGTCGG+CGG | - | chr8.4:55807413-55807432 | None:intergenic | 45.0% | |
GAGGATATTGACCCTCCAAA+TGG | + | chr8.4:55808516-55808535 | MS.gene74358:CDS | 45.0% | |
! | GGTAAGCTCAGTACTGAAGT+TGG | + | chr8.4:55807376-55807395 | MS.gene74358:CDS | 45.0% |
!!! | TATTTTTGTATAAAAAAAAA+AGG | - | chr8.4:55808178-55808197 | None:intergenic | 5.0% |
!!! | TTTTATACAAAAATATTTAT+TGG | + | chr8.4:55808183-55808202 | MS.gene74358:intron | 5.0% |
ATGGCACTGCTGCTGCTAAA+TGG | + | chr8.4:55808469-55808488 | MS.gene74358:CDS | 50.0% | |
TGACCCTCCAAATGGCTACA+TGG | + | chr8.4:55808524-55808543 | MS.gene74358:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 55807364 | 55808611 | 55807364 | ID=MS.gene74358 |
chr8.4 | mRNA | 55807364 | 55808611 | 55807364 | ID=MS.gene74358.t1;Parent=MS.gene74358 |
chr8.4 | exon | 55807364 | 55807525 | 55807364 | ID=MS.gene74358.t1.exon1;Parent=MS.gene74358.t1 |
chr8.4 | CDS | 55807364 | 55807525 | 55807364 | ID=cds.MS.gene74358.t1;Parent=MS.gene74358.t1 |
chr8.4 | exon | 55807885 | 55807936 | 55807885 | ID=MS.gene74358.t1.exon2;Parent=MS.gene74358.t1 |
chr8.4 | CDS | 55807885 | 55807936 | 55807885 | ID=cds.MS.gene74358.t1;Parent=MS.gene74358.t1 |
chr8.4 | exon | 55808328 | 55808611 | 55808328 | ID=MS.gene74358.t1.exon3;Parent=MS.gene74358.t1 |
chr8.4 | CDS | 55808328 | 55808611 | 55808328 | ID=cds.MS.gene74358.t1;Parent=MS.gene74358.t1 |
Gene Sequence |
Protein sequence |