Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016314.t1 | XP_013445246.1 | 96.2 | 156 | 6 | 0 | 1 | 156 | 1 | 156 | 7.50E-84 | 319.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016314.t1 | Q941R6 | 35.3 | 153 | 95 | 4 | 3 | 152 | 20 | 171 | 6.6e-20 | 98.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016314.t1 | I3SJ62 | 96.2 | 156 | 6 | 0 | 1 | 156 | 1 | 156 | 5.4e-84 | 319.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016314.t1 | MTR_8g045695 | 96.154 | 156 | 6 | 0 | 1 | 156 | 1 | 156 | 6.75e-111 | 311 |
MS.gene016314.t1 | MTR_8g045735 | 88.312 | 154 | 18 | 0 | 1 | 154 | 1 | 154 | 1.42e-101 | 288 |
MS.gene016314.t1 | MTR_8g045665 | 87.179 | 156 | 20 | 0 | 1 | 156 | 1 | 156 | 7.03e-100 | 284 |
MS.gene016314.t1 | MTR_8g045640 | 83.333 | 156 | 26 | 0 | 1 | 156 | 1 | 156 | 6.99e-96 | 274 |
MS.gene016314.t1 | MTR_8g045560 | 82.692 | 156 | 27 | 0 | 1 | 156 | 1 | 156 | 1.32e-94 | 270 |
MS.gene016314.t1 | MTR_8g045520 | 78.981 | 157 | 32 | 1 | 1 | 156 | 1 | 157 | 1.48e-89 | 258 |
MS.gene016314.t1 | MTR_8g045490 | 75.159 | 157 | 37 | 2 | 1 | 156 | 1 | 156 | 9.45e-86 | 248 |
MS.gene016314.t1 | MTR_8g045400 | 73.248 | 157 | 40 | 2 | 1 | 156 | 1 | 156 | 3.48e-83 | 241 |
MS.gene016314.t1 | MTR_8g045570 | 71.711 | 152 | 42 | 1 | 1 | 151 | 1 | 152 | 9.41e-81 | 235 |
MS.gene016314.t1 | MTR_8g045555 | 71.053 | 152 | 43 | 1 | 1 | 151 | 1 | 152 | 7.08e-80 | 233 |
MS.gene016314.t1 | MTR_8g045300 | 67.949 | 156 | 49 | 1 | 1 | 155 | 1 | 156 | 6.56e-79 | 231 |
MS.gene016314.t1 | MTR_1g030810 | 43.137 | 153 | 83 | 3 | 1 | 150 | 1 | 152 | 1.54e-39 | 131 |
MS.gene016314.t1 | MTR_1g030820 | 38.562 | 153 | 90 | 3 | 1 | 150 | 1 | 152 | 1.21e-37 | 126 |
MS.gene016314.t1 | MTR_1g030840 | 38.462 | 156 | 87 | 5 | 1 | 148 | 1 | 155 | 6.28e-29 | 104 |
MS.gene016314.t1 | MTR_8g012550 | 34.000 | 150 | 95 | 4 | 6 | 153 | 8 | 155 | 2.32e-26 | 97.8 |
MS.gene016314.t1 | MTR_1g031640 | 38.514 | 148 | 81 | 6 | 7 | 151 | 7 | 147 | 1.88e-22 | 87.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016314.t1 | AT5G28010 | 35.948 | 153 | 94 | 4 | 3 | 152 | 15 | 166 | 1.27e-25 | 96.3 |
MS.gene016314.t1 | AT5G28010 | 35.948 | 153 | 94 | 4 | 3 | 152 | 15 | 166 | 1.27e-25 | 96.3 |
MS.gene016314.t1 | AT1G70840 | 35.294 | 153 | 95 | 4 | 3 | 152 | 20 | 171 | 9.76e-25 | 94.0 |
MS.gene016314.t1 | AT1G70830 | 36.601 | 153 | 93 | 4 | 3 | 152 | 22 | 173 | 2.61e-24 | 92.8 |
MS.gene016314.t1 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 3.83e-24 | 93.2 |
MS.gene016314.t1 | AT1G70890 | 35.948 | 153 | 94 | 4 | 3 | 152 | 7 | 158 | 6.07e-24 | 91.7 |
MS.gene016314.t1 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 1.70e-23 | 92.8 |
MS.gene016314.t1 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 4.34e-23 | 93.2 |
MS.gene016314.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 184 | 335 | 1.52e-21 | 89.0 |
MS.gene016314.t1 | AT5G28000 | 32.680 | 153 | 99 | 4 | 3 | 152 | 13 | 164 | 2.82e-22 | 87.4 |
MS.gene016314.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 137 | 288 | 5.28e-22 | 89.7 |
MS.gene016314.t1 | AT1G70830 | 32.990 | 97 | 63 | 2 | 59 | 153 | 31 | 127 | 3.56e-11 | 60.1 |
MS.gene016314.t1 | AT1G70850 | 34.667 | 150 | 94 | 4 | 3 | 149 | 9 | 157 | 1.04e-21 | 87.8 |
MS.gene016314.t1 | AT1G70850 | 34.667 | 150 | 94 | 4 | 3 | 149 | 9 | 157 | 2.33e-21 | 88.2 |
MS.gene016314.t1 | AT1G70850 | 35.664 | 143 | 88 | 4 | 13 | 152 | 175 | 316 | 7.32e-21 | 87.0 |
MS.gene016314.t1 | AT1G70850 | 34.667 | 150 | 94 | 4 | 3 | 149 | 9 | 157 | 2.33e-21 | 88.2 |
MS.gene016314.t1 | AT1G70850 | 35.664 | 143 | 88 | 4 | 13 | 152 | 175 | 316 | 7.32e-21 | 87.0 |
MS.gene016314.t1 | AT4G23670 | 32.680 | 153 | 99 | 4 | 1 | 151 | 1 | 151 | 1.99e-20 | 82.4 |
MS.gene016314.t1 | AT1G14930 | 29.299 | 157 | 107 | 4 | 1 | 155 | 1 | 155 | 2.63e-19 | 79.7 |
MS.gene016314.t1 | AT1G70870 | 34.839 | 155 | 79 | 5 | 1 | 150 | 1 | 138 | 6.98e-19 | 78.2 |
MS.gene016314.t1 | AT2G01520 | 29.412 | 153 | 104 | 4 | 1 | 151 | 1 | 151 | 1.07e-18 | 77.8 |
MS.gene016314.t1 | AT2G01530 | 30.719 | 153 | 102 | 4 | 1 | 151 | 1 | 151 | 9.47e-18 | 75.5 |
MS.gene016314.t1 | AT1G70880 | 29.412 | 153 | 104 | 4 | 3 | 152 | 8 | 159 | 3.86e-17 | 73.9 |
MS.gene016314.t1 | AT1G14940 | 28.662 | 157 | 108 | 4 | 1 | 155 | 1 | 155 | 5.89e-17 | 73.6 |
MS.gene016314.t1 | AT1G35260 | 30.612 | 147 | 91 | 5 | 9 | 149 | 8 | 149 | 2.25e-16 | 72.0 |
MS.gene016314.t1 | AT4G14060 | 28.758 | 153 | 105 | 4 | 1 | 151 | 1 | 151 | 2.29e-16 | 72.0 |
MS.gene016314.t1 | AT4G23680 | 28.947 | 152 | 104 | 4 | 1 | 150 | 1 | 150 | 2.93e-16 | 71.6 |
MS.gene016314.t1 | AT1G23130 | 28.188 | 149 | 104 | 3 | 3 | 149 | 10 | 157 | 4.69e-16 | 71.2 |
MS.gene016314.t1 | AT1G24020 | 30.968 | 155 | 98 | 4 | 1 | 150 | 1 | 151 | 4.89e-16 | 71.2 |
MS.gene016314.t1 | AT1G24020 | 30.968 | 155 | 98 | 4 | 1 | 150 | 1 | 151 | 4.89e-16 | 71.2 |
MS.gene016314.t1 | AT1G14950 | 28.025 | 157 | 109 | 4 | 1 | 155 | 1 | 155 | 7.89e-16 | 70.5 |
MS.gene016314.t1 | AT1G23120 | 28.667 | 150 | 99 | 5 | 3 | 149 | 1 | 145 | 1.71e-15 | 69.3 |
MS.gene016314.t1 | AT1G23120 | 27.660 | 141 | 96 | 4 | 10 | 149 | 60 | 195 | 4.49e-15 | 69.7 |
MS.gene016314.t1 | AT1G30990 | 27.815 | 151 | 104 | 5 | 1 | 149 | 1 | 148 | 1.52e-13 | 64.3 |
MS.gene016314.t1 | AT1G14960 | 26.452 | 155 | 110 | 4 | 1 | 153 | 1 | 153 | 8.47e-13 | 62.4 |
MS.gene016314.t1 | AT1G35310 | 27.338 | 139 | 97 | 4 | 13 | 149 | 12 | 148 | 1.56e-12 | 62.0 |
MS.gene016314.t1 | AT3G26460 | 26.797 | 153 | 109 | 3 | 1 | 151 | 1 | 152 | 2.21e-12 | 61.6 |
MS.gene016314.t1 | AT3G26450 | 24.675 | 154 | 111 | 5 | 1 | 151 | 1 | 152 | 4.16e-11 | 58.2 |
Find 28 sgRNAs with CRISPR-Local
Find 63 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAATCACATACAAGCTATT+TGG | 0.273919 | 8.2:+56331302 | MS.gene016314:CDS |
TGGAGATATTGAAAACTATA+AGG | 0.391039 | 8.2:+56331325 | MS.gene016314:CDS |
ATGGAAATTCTGCTGTTAGA+TGG | 0.411619 | 8.2:+56331384 | MS.gene016314:CDS |
GGTAAACTTATTACTGAACT+TGG | 0.415223 | 8.2:+56330092 | MS.gene016314:CDS |
AGGTAGTCCATCCAGCCATT+TGG | 0.456227 | 8.2:-56331446 | None:intergenic |
AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8.2:+56330245 | MS.gene016314:CDS |
AGCTTCATGAGGGTGAAGAT+TGG | 0.493681 | 8.2:+56330204 | MS.gene016314:CDS |
TCATCTTGTCAAAGGGGAAA+AGG | 0.504175 | 8.2:+56331496 | MS.gene016314:CDS |
AGATTGGCATCATACTGATT+CGG | 0.504369 | 8.2:+56330220 | MS.gene016314:CDS |
AAGAGCACTAGAGATATTGA+TGG | 0.505384 | 8.2:+56331473 | MS.gene016314:CDS |
TTGATGGTCATCTTGTCAAA+GGG | 0.506740 | 8.2:+56331489 | MS.gene016314:CDS |
ATCTTCACCCTCATGAAGCT+TGG | 0.519812 | 8.2:-56330201 | None:intergenic |
ATCACATACAAGCTATTTGG+TGG | 0.530005 | 8.2:+56331305 | MS.gene016314:CDS |
GTAAACTTATTACTGAACTT+GGG | 0.542207 | 8.2:+56330093 | MS.gene016314:CDS |
ATTGATGGTCATCTTGTCAA+AGG | 0.543582 | 8.2:+56331488 | MS.gene016314:CDS |
AGTTTGTAGAACTTGTCAGC+TGG | 0.569465 | 8.2:-56330125 | None:intergenic |
TATCTCTAGTGCTCTTGCTA+AGG | 0.569595 | 8.2:-56331466 | None:intergenic |
GAAGTGCTTAACAAGGCTGA+TGG | 0.573383 | 8.2:+56331365 | MS.gene016314:CDS |
ATGTTGATACTCCAAATGGC+TGG | 0.578150 | 8.2:+56331435 | MS.gene016314:CDS |
TGATACTCCAAATGGCTGGA+TGG | 0.587093 | 8.2:+56331439 | MS.gene016314:CDS |
GAGGATGTTGATACTCCAAA+TGG | 0.593330 | 8.2:+56331431 | MS.gene016314:CDS |
ATACTGATTCGGTTAAACAC+TGG | 0.606046 | 8.2:+56330231 | MS.gene016314:CDS |
TCATCATACCAAGCTTCATG+AGG | 0.610699 | 8.2:+56330193 | MS.gene016314:CDS |
CATCATACCAAGCTTCATGA+GGG | 0.642119 | 8.2:+56330194 | MS.gene016314:CDS |
CATCTTAGAAGTGCTTAACA+AGG | 0.644958 | 8.2:+56331358 | MS.gene016314:CDS |
TGATGGTCATCTTGTCAAAG+GGG | 0.652198 | 8.2:+56331490 | MS.gene016314:CDS |
TGACATAACAACAGATGGCG+AGG | 0.663434 | 8.2:+56331232 | MS.gene016314:intron |
TGATTATGAGAAGAACAATG+AGG | 0.694185 | 8.2:+56331412 | MS.gene016314:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTTACTATAAAATAGTA+AGG | + | chr8.2:56331002-56331021 | MS.gene016314:intron | 10.0% |
!! | TTATCTTATTATAATATTTC+TGG | + | chr8.2:56331140-56331159 | MS.gene016314:intron | 10.0% |
!!! | TTATTTTACTAAAAACTTTA+AGG | - | chr8.2:56330907-56330926 | None:intergenic | 10.0% |
!! | AAATTCTAAATTAAGTCAAT+AGG | - | chr8.2:56330469-56330488 | None:intergenic | 15.0% |
!! | AGATAATCTATATAAAAAGT+AGG | + | chr8.2:56330840-56330859 | MS.gene016314:intron | 15.0% |
!! | GATAATCTATATAAAAAGTA+GGG | + | chr8.2:56330841-56330860 | MS.gene016314:intron | 15.0% |
!! | TATAGTAATAAAAAGAAGAT+TGG | + | chr8.2:56330355-56330374 | MS.gene016314:intron | 15.0% |
!!! | AAAGCTTATTTTATTCTTTT+TGG | + | chr8.2:56331196-56331215 | MS.gene016314:intron | 15.0% |
!! | CATCATATAAGATCTTTAAA+AGG | + | chr8.2:56331043-56331062 | MS.gene016314:intron | 20.0% |
!!! | GAATAAAATAAGCTTTTCAA+AGG | - | chr8.2:56331192-56331211 | None:intergenic | 20.0% |
! | AAAAAATTATACTCGTACCA+TGG | - | chr8.2:56330781-56330800 | None:intergenic | 25.0% |
! | AAAATCACATACAAGCTATT+TGG | + | chr8.2:56331302-56331321 | MS.gene016314:CDS | 25.0% |
! | AGTAATAAAAAGAAGATTGG+TGG | + | chr8.2:56330358-56330377 | MS.gene016314:intron | 25.0% |
! | GTAAACTTATTACTGAACTT+GGG | + | chr8.2:56330093-56330112 | MS.gene016314:CDS | 25.0% |
! | GTAATAAAAAGAAGATTGGT+GGG | + | chr8.2:56330359-56330378 | MS.gene016314:intron | 25.0% |
! | TATCAAACAAGATGATGATT+TGG | - | chr8.2:56330297-56330316 | None:intergenic | 25.0% |
! | TCTTCGTTATAGAATTCATT+TGG | - | chr8.2:56330395-56330414 | None:intergenic | 25.0% |
! | TGGAGATATTGAAAACTATA+AGG | + | chr8.2:56331325-56331344 | MS.gene016314:CDS | 25.0% |
! | TTATCTCTAGACAAAAAATC+TGG | - | chr8.2:56330826-56330845 | None:intergenic | 25.0% |
!!! | ATCTTTAAAAGGTGTTTTAG+AGG | + | chr8.2:56331054-56331073 | MS.gene016314:intron | 25.0% |
GGTAAACTTATTACTGAACT+TGG | + | chr8.2:56330092-56330111 | MS.gene016314:CDS | 30.0% | |
GTTTGTATGATATGATCCTT+CGG | + | chr8.2:56330863-56330882 | MS.gene016314:intron | 30.0% | |
TGATTATGAGAAGAACAATG+AGG | + | chr8.2:56331412-56331431 | MS.gene016314:CDS | 30.0% | |
AAACACTGGACTTATGTCAT+AGG | + | chr8.2:56330245-56330264 | MS.gene016314:CDS | 35.0% | |
AAAGCAACAAATGACCCTAA+AGG | + | chr8.2:56330723-56330742 | MS.gene016314:intron | 35.0% | |
AGTAGCATCTCTTTCCTTTA+GGG | - | chr8.2:56330740-56330759 | None:intergenic | 35.0% | |
ATCACATACAAGCTATTTGG+TGG | + | chr8.2:56331305-56331324 | MS.gene016314:CDS | 35.0% | |
ATGGAAATTCTGCTGTTAGA+TGG | + | chr8.2:56331384-56331403 | MS.gene016314:CDS | 35.0% | |
TATCGAAATCATTGTACACG+AGG | + | chr8.2:56330573-56330592 | MS.gene016314:intron | 35.0% | |
! | AGATTGGCATCATACTGATT+CGG | + | chr8.2:56330220-56330239 | MS.gene016314:CDS | 35.0% |
! | ATTGATGGTCATCTTGTCAA+AGG | + | chr8.2:56331488-56331507 | MS.gene016314:CDS | 35.0% |
! | TTGATGGTCATCTTGTCAAA+GGG | + | chr8.2:56331489-56331508 | MS.gene016314:CDS | 35.0% |
!! | AAGAGCACTAGAGATATTGA+TGG | + | chr8.2:56331473-56331492 | MS.gene016314:CDS | 35.0% |
!! | ATACTGATTCGGTTAAACAC+TGG | + | chr8.2:56330231-56330250 | MS.gene016314:CDS | 35.0% |
!! | CATCTTAGAAGTGCTTAACA+AGG | + | chr8.2:56331358-56331377 | MS.gene016314:CDS | 35.0% |
AACCACCTTTGTATTCACCA+TGG | + | chr8.2:56330761-56330780 | MS.gene016314:intron | 40.0% | |
AGTTTGTAGAACTTGTCAGC+TGG | - | chr8.2:56330128-56330147 | None:intergenic | 40.0% | |
ATGTTGATACTCCAAATGGC+TGG | + | chr8.2:56331435-56331454 | MS.gene016314:CDS | 40.0% | |
CATCATACCAAGCTTCATGA+GGG | + | chr8.2:56330194-56330213 | MS.gene016314:CDS | 40.0% | |
GAGGATGTTGATACTCCAAA+TGG | + | chr8.2:56331431-56331450 | MS.gene016314:CDS | 40.0% | |
GAGTAGCATCTCTTTCCTTT+AGG | - | chr8.2:56330741-56330760 | None:intergenic | 40.0% | |
TACCATGGTGAATACAAAGG+TGG | - | chr8.2:56330766-56330785 | None:intergenic | 40.0% | |
TATCTCTAGTGCTCTTGCTA+AGG | - | chr8.2:56331469-56331488 | None:intergenic | 40.0% | |
TCATCATACCAAGCTTCATG+AGG | + | chr8.2:56330193-56330212 | MS.gene016314:CDS | 40.0% | |
TCATCTTGTCAAAGGGGAAA+AGG | + | chr8.2:56331496-56331515 | MS.gene016314:CDS | 40.0% | |
TCGTACCATGGTGAATACAA+AGG | - | chr8.2:56330769-56330788 | None:intergenic | 40.0% | |
TGAGACTGATCTAACAACGA+AGG | + | chr8.2:56330432-56330451 | MS.gene016314:intron | 40.0% | |
TGATGGTCATCTTGTCAAAG+GGG | + | chr8.2:56331490-56331509 | MS.gene016314:CDS | 40.0% | |
! | CGTCTTTAGACATTTTCCGA+AGG | - | chr8.2:56330882-56330901 | None:intergenic | 40.0% |
AGCTTCATGAGGGTGAAGAT+TGG | + | chr8.2:56330204-56330223 | MS.gene016314:CDS | 45.0% | |
ATCTTCACCCTCATGAAGCT+TGG | - | chr8.2:56330204-56330223 | None:intergenic | 45.0% | |
GCCATCTGTTGTTATGTCAG+AGG | - | chr8.2:56331231-56331250 | None:intergenic | 45.0% | |
GCCTCTGACATAACAACAGA+TGG | + | chr8.2:56331227-56331246 | MS.gene016314:intron | 45.0% | |
TGACATAACAACAGATGGCG+AGG | + | chr8.2:56331232-56331251 | MS.gene016314:intron | 45.0% | |
TGATACTCCAAATGGCTGGA+TGG | + | chr8.2:56331439-56331458 | MS.gene016314:CDS | 45.0% | |
TTGTACACGAGGTGAAGTAC+TGG | + | chr8.2:56330584-56330603 | MS.gene016314:intron | 45.0% | |
! | GAAGTGCTTAACAAGGCTGA+TGG | + | chr8.2:56331365-56331384 | MS.gene016314:CDS | 45.0% |
!! | AAATAATATATATTATGAAT+GGG | - | chr8.2:56330678-56330697 | None:intergenic | 5.0% |
!! | AATATATATTATTTAGAAAA+AGG | + | chr8.2:56330684-56330703 | MS.gene016314:intron | 5.0% |
!! | AATTAATAAAAAAAAAGTAA+CGG | - | chr8.2:56330638-56330657 | None:intergenic | 5.0% |
!! | TAAATAATATATATTATGAA+TGG | - | chr8.2:56330679-56330698 | None:intergenic | 5.0% |
!!! | TAATTTAGAATTTTTTTAAT+TGG | + | chr8.2:56330476-56330495 | MS.gene016314:intron | 5.0% |
AGGTAGTCCATCCAGCCATT+TGG | - | chr8.2:56331449-56331468 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 56330080 | 56331529 | 56330080 | ID=MS.gene016314 |
chr8.2 | mRNA | 56330080 | 56331529 | 56330080 | ID=MS.gene016314.t1;Parent=MS.gene016314 |
chr8.2 | exon | 56330080 | 56330266 | 56330080 | ID=MS.gene016314.t1.exon1;Parent=MS.gene016314.t1 |
chr8.2 | CDS | 56330080 | 56330266 | 56330080 | ID=cds.MS.gene016314.t1;Parent=MS.gene016314.t1 |
chr8.2 | exon | 56331246 | 56331529 | 56331246 | ID=MS.gene016314.t1.exon2;Parent=MS.gene016314.t1 |
chr8.2 | CDS | 56331246 | 56331529 | 56331246 | ID=cds.MS.gene016314.t1;Parent=MS.gene016314.t1 |
Gene Sequence |
Protein sequence |