Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016330.t1 | XP_003628200.1 | 91.7 | 156 | 13 | 0 | 1 | 156 | 1 | 156 | 1.10E-79 | 305.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016330.t1 | Q9SSK5 | 36.9 | 149 | 91 | 3 | 3 | 149 | 7 | 154 | 1.0e-20 | 101.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016330.t1 | G7L7T5 | 91.7 | 156 | 13 | 0 | 1 | 156 | 1 | 156 | 8.1e-80 | 305.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016330.t1 | MTR_8g045490 | 91.667 | 156 | 13 | 0 | 1 | 156 | 1 | 156 | 1.94e-104 | 295 |
MS.gene016330.t1 | MTR_8g045520 | 80.892 | 157 | 29 | 1 | 1 | 156 | 1 | 157 | 9.97e-92 | 263 |
MS.gene016330.t1 | MTR_8g045400 | 77.707 | 157 | 33 | 2 | 1 | 156 | 1 | 156 | 3.93e-87 | 251 |
MS.gene016330.t1 | MTR_8g045570 | 75.658 | 152 | 37 | 0 | 1 | 152 | 1 | 152 | 2.26e-85 | 247 |
MS.gene016330.t1 | MTR_8g045695 | 73.856 | 153 | 39 | 1 | 1 | 153 | 1 | 152 | 1.53e-82 | 240 |
MS.gene016330.t1 | MTR_8g045555 | 74.342 | 152 | 39 | 0 | 1 | 152 | 1 | 152 | 2.34e-82 | 239 |
MS.gene016330.t1 | MTR_8g045300 | 70.513 | 156 | 45 | 1 | 1 | 155 | 1 | 156 | 1.71e-81 | 237 |
MS.gene016330.t1 | MTR_8g045735 | 69.935 | 153 | 45 | 1 | 1 | 153 | 1 | 152 | 9.63e-79 | 230 |
MS.gene016330.t1 | MTR_8g045665 | 69.935 | 153 | 45 | 1 | 1 | 153 | 1 | 152 | 7.47e-77 | 226 |
MS.gene016330.t1 | MTR_8g045640 | 68.627 | 153 | 47 | 1 | 1 | 153 | 1 | 152 | 7.87e-75 | 220 |
MS.gene016330.t1 | MTR_8g045560 | 67.320 | 153 | 49 | 1 | 1 | 153 | 1 | 152 | 1.89e-73 | 217 |
MS.gene016330.t1 | MTR_1g030810 | 42.484 | 153 | 85 | 2 | 1 | 151 | 1 | 152 | 2.15e-39 | 130 |
MS.gene016330.t1 | MTR_1g030820 | 39.869 | 153 | 89 | 2 | 1 | 151 | 1 | 152 | 5.99e-39 | 129 |
MS.gene016330.t1 | MTR_1g030840 | 36.538 | 156 | 91 | 4 | 1 | 149 | 1 | 155 | 1.07e-27 | 101 |
MS.gene016330.t1 | MTR_8g012550 | 34.932 | 146 | 92 | 3 | 6 | 150 | 8 | 151 | 2.85e-27 | 100 |
MS.gene016330.t1 | MTR_1g031640 | 37.838 | 148 | 83 | 5 | 7 | 152 | 7 | 147 | 1.03e-24 | 93.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016330.t1 | AT5G28010 | 35.570 | 149 | 93 | 3 | 3 | 149 | 15 | 162 | 1.42e-25 | 95.9 |
MS.gene016330.t1 | AT5G28010 | 35.570 | 149 | 93 | 3 | 3 | 149 | 15 | 162 | 1.42e-25 | 95.9 |
MS.gene016330.t1 | AT1G70890 | 36.913 | 149 | 91 | 3 | 3 | 149 | 7 | 154 | 5.54e-25 | 94.4 |
MS.gene016330.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 3 | 149 | 22 | 169 | 9.54e-23 | 89.0 |
MS.gene016330.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 3 | 149 | 22 | 169 | 1.66e-22 | 89.0 |
MS.gene016330.t1 | AT1G70840 | 32.215 | 149 | 98 | 3 | 3 | 149 | 20 | 167 | 3.83e-22 | 87.4 |
MS.gene016330.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 3 | 149 | 22 | 169 | 5.42e-22 | 89.0 |
MS.gene016330.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 3 | 149 | 22 | 169 | 1.57e-21 | 89.0 |
MS.gene016330.t1 | AT1G70830 | 32.886 | 149 | 97 | 3 | 3 | 149 | 184 | 331 | 5.84e-20 | 84.7 |
MS.gene016330.t1 | AT5G28000 | 32.215 | 149 | 98 | 3 | 3 | 149 | 13 | 160 | 1.92e-21 | 85.5 |
MS.gene016330.t1 | AT1G70870 | 35.294 | 153 | 82 | 4 | 1 | 151 | 1 | 138 | 1.83e-20 | 82.0 |
MS.gene016330.t1 | AT1G70830 | 32.886 | 149 | 97 | 3 | 3 | 149 | 137 | 284 | 2.49e-20 | 85.1 |
MS.gene016330.t1 | AT1G70850 | 32.215 | 149 | 98 | 3 | 3 | 149 | 9 | 156 | 2.55e-20 | 84.0 |
MS.gene016330.t1 | AT1G70850 | 32.215 | 149 | 98 | 3 | 3 | 149 | 9 | 156 | 7.07e-20 | 84.3 |
MS.gene016330.t1 | AT1G70850 | 32.374 | 139 | 91 | 3 | 13 | 149 | 175 | 312 | 1.38e-18 | 80.9 |
MS.gene016330.t1 | AT1G70850 | 32.215 | 149 | 98 | 3 | 3 | 149 | 9 | 156 | 7.07e-20 | 84.3 |
MS.gene016330.t1 | AT1G70850 | 32.374 | 139 | 91 | 3 | 13 | 149 | 175 | 312 | 1.38e-18 | 80.9 |
MS.gene016330.t1 | AT1G23120 | 30.070 | 143 | 95 | 3 | 7 | 149 | 7 | 144 | 1.25e-19 | 80.1 |
MS.gene016330.t1 | AT4G23670 | 33.987 | 153 | 98 | 3 | 1 | 152 | 1 | 151 | 1.33e-19 | 80.1 |
MS.gene016330.t1 | AT1G23130 | 29.730 | 148 | 102 | 2 | 3 | 149 | 10 | 156 | 2.74e-19 | 79.7 |
MS.gene016330.t1 | AT1G23120 | 30.070 | 143 | 95 | 3 | 7 | 149 | 57 | 194 | 4.20e-19 | 80.1 |
MS.gene016330.t1 | AT1G70880 | 30.201 | 149 | 101 | 3 | 3 | 149 | 8 | 155 | 1.26e-18 | 77.8 |
MS.gene016330.t1 | AT2G01520 | 31.373 | 153 | 102 | 3 | 1 | 152 | 1 | 151 | 1.21e-17 | 75.1 |
MS.gene016330.t1 | AT4G23680 | 31.373 | 153 | 102 | 3 | 1 | 152 | 1 | 151 | 4.69e-17 | 73.6 |
MS.gene016330.t1 | AT1G14930 | 31.677 | 161 | 93 | 5 | 1 | 153 | 1 | 152 | 2.14e-16 | 72.0 |
MS.gene016330.t1 | AT2G01530 | 31.373 | 153 | 102 | 3 | 1 | 152 | 1 | 151 | 4.21e-16 | 71.2 |
MS.gene016330.t1 | AT4G14060 | 32.026 | 153 | 101 | 3 | 1 | 152 | 1 | 151 | 4.99e-16 | 70.9 |
MS.gene016330.t1 | AT1G35260 | 28.276 | 145 | 100 | 3 | 7 | 149 | 6 | 148 | 7.88e-16 | 70.5 |
MS.gene016330.t1 | AT1G24020 | 32.051 | 156 | 104 | 2 | 1 | 155 | 1 | 155 | 6.65e-15 | 68.2 |
MS.gene016330.t1 | AT1G24020 | 32.051 | 156 | 104 | 2 | 1 | 155 | 1 | 155 | 6.65e-15 | 68.2 |
MS.gene016330.t1 | AT1G30990 | 31.333 | 150 | 99 | 4 | 1 | 149 | 1 | 147 | 4.67e-14 | 65.9 |
MS.gene016330.t1 | AT1G14940 | 30.000 | 150 | 102 | 3 | 1 | 149 | 1 | 148 | 5.61e-13 | 63.2 |
MS.gene016330.t1 | AT3G26460 | 31.169 | 154 | 102 | 4 | 1 | 152 | 1 | 152 | 5.87e-13 | 62.8 |
MS.gene016330.t1 | AT1G14950 | 28.289 | 152 | 106 | 3 | 1 | 151 | 1 | 150 | 2.17e-12 | 61.6 |
MS.gene016330.t1 | AT1G35310 | 24.638 | 138 | 101 | 3 | 13 | 149 | 12 | 147 | 3.38e-11 | 58.2 |
Find 26 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGGCACTGCTGCTGCTAAA+TGG | 0.310932 | 8.2:+56524163 | MS.gene016330:CDS |
CACCCTTATCAATGACTTCA+AGG | 0.380806 | 8.2:-56524140 | None:intergenic |
TTATAGAGCTATCTTTGCTT+TGG | 0.392094 | 8.2:-56524283 | None:intergenic |
AAACACTGGACTTACGTCAT+AGG | 0.436108 | 8.2:+56523223 | MS.gene016330:CDS |
TTCTAAGAAATGGTGCTCTC+TGG | 0.436928 | 8.2:+56523049 | None:intergenic |
CATCCTTGAAGTCATTGATA+AGG | 0.445764 | 8.2:+56524137 | MS.gene016330:CDS |
AAGTATTCCATGTAGCCATT+TGG | 0.448595 | 8.2:-56524225 | None:intergenic |
AACTTCATGAAGGTGAAGAT+TGG | 0.478377 | 8.2:+56523182 | MS.gene016330:CDS |
GGTAAGCTCAGTACTGAAGT+TGG | 0.490802 | 8.2:+56523070 | MS.gene016330:CDS |
ATCCTTGAAGTCATTGATAA+GGG | 0.494628 | 8.2:+56524138 | MS.gene016330:CDS |
AGATATTGATGAGCACTATA+AGG | 0.500590 | 8.2:+56524104 | MS.gene016330:CDS |
GAACAGATTGTAGAACTTGT+CGG | 0.501167 | 8.2:-56523107 | None:intergenic |
TATTCCATGTAGCCATTTGG+AGG | 0.517921 | 8.2:-56524222 | None:intergenic |
AGATTGGCATCACACTGATT+CGG | 0.519723 | 8.2:+56523198 | MS.gene016330:CDS |
AATGGCTACATGGAATACTT+TGG | 0.525683 | 8.2:+56524228 | MS.gene016330:CDS |
TGACCCTCCAAATGGCTACA+TGG | 0.526835 | 8.2:+56524218 | MS.gene016330:CDS |
GAGGATATTGACCCTCCAAA+TGG | 0.540200 | 8.2:+56524210 | MS.gene016330:CDS |
TATGATGAACTCTTTCACAA+AGG | 0.552779 | 8.2:-56523156 | None:intergenic |
GAAGTCATTGATAAGGGTGA+TGG | 0.579318 | 8.2:+56524144 | MS.gene016330:CDS |
ATCATAATTCACAGATGGCA+AGG | 0.582682 | 8.2:+56524008 | MS.gene016330:intron |
CATCATACAAAACTTCATGA+AGG | 0.606616 | 8.2:+56523172 | MS.gene016330:CDS |
ACACTGATTCGGTTAAACAC+TGG | 0.614381 | 8.2:+56523209 | MS.gene016330:CDS |
ATTCCATGTAGCCATTTGGA+GGG | 0.625101 | 8.2:-56524221 | None:intergenic |
AGATTGTAGAACTTGTCGGC+GGG | 0.646397 | 8.2:-56523103 | None:intergenic |
TGAATATGAAAAGATCAATG+AGG | 0.667026 | 8.2:+56524191 | MS.gene016330:CDS |
CAGATTGTAGAACTTGTCGG+CGG | 0.688816 | 8.2:-56523104 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAAATAAGATAATGATT+TGG | - | chr8.2:56523285-56523304 | None:intergenic | 10.0% |
!! | AGGAATAATAAATATTTATA+AGG | - | chr8.2:56523853-56523872 | None:intergenic | 10.0% |
!!! | ATAGTTTATTTGTTAAAAAA+TGG | + | chr8.2:56523917-56523936 | MS.gene016330:intron | 10.0% |
!!! | TAGTTTATTTGTTAAAAAAT+GGG | + | chr8.2:56523918-56523937 | MS.gene016330:intron | 10.0% |
!! | AAAAAAAATCAACAATCATT+TGG | + | chr8.2:56523610-56523629 | MS.gene016330:intron | 15.0% |
!! | AAAAAAATCAACAATCATTT+GGG | + | chr8.2:56523611-56523630 | MS.gene016330:intron | 15.0% |
!! | ACAAATAAAAATGAAAACTT+TGG | - | chr8.2:56523972-56523991 | None:intergenic | 15.0% |
!!! | TGTTGATTTTTTTTGTCATA+AGG | - | chr8.2:56523604-56523623 | None:intergenic | 20.0% |
! | AAAAACACTTATAAGCTCTT+TGG | + | chr8.2:56524078-56524097 | MS.gene016330:CDS | 25.0% |
! | AACCACAGTTATTCTTTATA+TGG | - | chr8.2:56523828-56523847 | None:intergenic | 25.0% |
! | AGATTATGAGATCTCAAAAA+TGG | + | chr8.2:56523707-56523726 | MS.gene016330:intron | 25.0% |
! | ATAAGAAAGAAACAAGTACA+TGG | + | chr8.2:56523391-56523410 | MS.gene016330:intron | 25.0% |
! | TGAATATGAAAAGATCAATG+AGG | + | chr8.2:56524191-56524210 | MS.gene016330:CDS | 25.0% |
! | TTGGGAAGAAAAAAAAATCA+GGG | - | chr8.2:56523474-56523493 | None:intergenic | 25.0% |
! | TTTGGGAAGAAAAAAAAATC+AGG | - | chr8.2:56523475-56523494 | None:intergenic | 25.0% |
!! | CTATCTTGAAAATGGTTTTT+GGG | - | chr8.2:56523492-56523511 | None:intergenic | 25.0% |
!! | TCTATCTTGAAAATGGTTTT+TGG | - | chr8.2:56523493-56523512 | None:intergenic | 25.0% |
AACATAGTCAAAAGTAGAAG+AGG | - | chr8.2:56523535-56523554 | None:intergenic | 30.0% | |
AGATATTGATGAGCACTATA+AGG | + | chr8.2:56524104-56524123 | MS.gene016330:CDS | 30.0% | |
AGCCATATAAAGAATAACTG+TGG | + | chr8.2:56523823-56523842 | MS.gene016330:intron | 30.0% | |
ATCCTTGAAGTCATTGATAA+GGG | + | chr8.2:56524138-56524157 | MS.gene016330:CDS | 30.0% | |
CATCATACAAAACTTCATGA+AGG | + | chr8.2:56523172-56523191 | MS.gene016330:CDS | 30.0% | |
TACATTCTACAAACCAAACA+TGG | + | chr8.2:56523444-56523463 | MS.gene016330:intron | 30.0% | |
TATGATGAACTCTTTCACAA+AGG | - | chr8.2:56523159-56523178 | None:intergenic | 30.0% | |
TGGGAAGAAAAAAAAATCAG+GGG | - | chr8.2:56523473-56523492 | None:intergenic | 30.0% | |
TTATAGAGCTATCTTTGCTT+TGG | - | chr8.2:56524286-56524305 | None:intergenic | 30.0% | |
! | TGAAGCATCTATCTTGAAAA+TGG | - | chr8.2:56523500-56523519 | None:intergenic | 30.0% |
! | TTTTTGTCATAAGGTTCTCT+GGG | - | chr8.2:56523595-56523614 | None:intergenic | 30.0% |
!! | CTACTTTTGACTATGTTGAA+CGG | + | chr8.2:56523538-56523557 | MS.gene016330:intron | 30.0% |
!! | TAATGATTTGGTTATCGATC+AGG | - | chr8.2:56523273-56523292 | None:intergenic | 30.0% |
!! | TACTTTTGACTATGTTGAAC+GGG | + | chr8.2:56523539-56523558 | MS.gene016330:intron | 30.0% |
!!! | TTTTTTGTCATAAGGTTCTC+TGG | - | chr8.2:56523596-56523615 | None:intergenic | 30.0% |
AACTTCATGAAGGTGAAGAT+TGG | + | chr8.2:56523182-56523201 | MS.gene016330:CDS | 35.0% | |
AAGTATTCCATGTAGCCATT+TGG | - | chr8.2:56524228-56524247 | None:intergenic | 35.0% | |
AATGGCTACATGGAATACTT+TGG | + | chr8.2:56524228-56524247 | MS.gene016330:CDS | 35.0% | |
ATAGTCAAAAGTAGAAGAGG+TGG | - | chr8.2:56523532-56523551 | None:intergenic | 35.0% | |
ATCATAATTCACAGATGGCA+AGG | + | chr8.2:56524008-56524027 | MS.gene016330:intron | 35.0% | |
ATCTGTGAATTATGATGGCA+CGG | - | chr8.2:56524004-56524023 | None:intergenic | 35.0% | |
CATCCTTGAAGTCATTGATA+AGG | + | chr8.2:56524137-56524156 | MS.gene016330:CDS | 35.0% | |
GAACAGATTGTAGAACTTGT+CGG | - | chr8.2:56523110-56523129 | None:intergenic | 35.0% | |
TTGCCATCTGTGAATTATGA+TGG | - | chr8.2:56524009-56524028 | None:intergenic | 35.0% | |
! | TTTTGTCATAAGGTTCTCTG+GGG | - | chr8.2:56523594-56523613 | None:intergenic | 35.0% |
AAACACTGGACTTACGTCAT+AGG | + | chr8.2:56523223-56523242 | MS.gene016330:CDS | 40.0% | |
AAATCAGGGGTAACCATGTT+TGG | - | chr8.2:56523460-56523479 | None:intergenic | 40.0% | |
ATTCCATGTAGCCATTTGGA+GGG | - | chr8.2:56524224-56524243 | None:intergenic | 40.0% | |
CACCCTTATCAATGACTTCA+AGG | - | chr8.2:56524143-56524162 | None:intergenic | 40.0% | |
GAAGTCATTGATAAGGGTGA+TGG | + | chr8.2:56524144-56524163 | MS.gene016330:CDS | 40.0% | |
GTGCCATCATAATTCACAGA+TGG | + | chr8.2:56524003-56524022 | MS.gene016330:intron | 40.0% | |
TATTCCATGTAGCCATTTGG+AGG | - | chr8.2:56524225-56524244 | None:intergenic | 40.0% | |
TCTGTGAATTATGATGGCAC+GGG | - | chr8.2:56524003-56524022 | None:intergenic | 40.0% | |
! | AGATTGGCATCACACTGATT+CGG | + | chr8.2:56523198-56523217 | MS.gene016330:CDS | 40.0% |
! | ATAAGGTTCTCTGGGGAATA+TGG | - | chr8.2:56523587-56523606 | None:intergenic | 40.0% |
!! | ACACTGATTCGGTTAAACAC+TGG | + | chr8.2:56523209-56523228 | MS.gene016330:CDS | 40.0% |
AGATTGTAGAACTTGTCGGC+GGG | - | chr8.2:56523106-56523125 | None:intergenic | 45.0% | |
CAGATTGTAGAACTTGTCGG+CGG | - | chr8.2:56523107-56523126 | None:intergenic | 45.0% | |
GAGGATATTGACCCTCCAAA+TGG | + | chr8.2:56524210-56524229 | MS.gene016330:CDS | 45.0% | |
! | GGTAAGCTCAGTACTGAAGT+TGG | + | chr8.2:56523070-56523089 | MS.gene016330:CDS | 45.0% |
!!! | ATATTTTTGTATAAAAAAAA+AGG | - | chr8.2:56523873-56523892 | None:intergenic | 5.0% |
!!! | TTTTATACAAAAATATTTAT+TGG | + | chr8.2:56523877-56523896 | MS.gene016330:intron | 5.0% |
ATGGCACTGCTGCTGCTAAA+TGG | + | chr8.2:56524163-56524182 | MS.gene016330:CDS | 50.0% | |
TGACCCTCCAAATGGCTACA+TGG | + | chr8.2:56524218-56524237 | MS.gene016330:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 56523058 | 56524305 | 56523058 | ID=MS.gene016330 |
chr8.2 | mRNA | 56523058 | 56524305 | 56523058 | ID=MS.gene016330.t1;Parent=MS.gene016330 |
chr8.2 | exon | 56523058 | 56523244 | 56523058 | ID=MS.gene016330.t1.exon1;Parent=MS.gene016330.t1 |
chr8.2 | CDS | 56523058 | 56523244 | 56523058 | ID=cds.MS.gene016330.t1;Parent=MS.gene016330.t1 |
chr8.2 | exon | 56524022 | 56524305 | 56524022 | ID=MS.gene016330.t1.exon2;Parent=MS.gene016330.t1 |
chr8.2 | CDS | 56524022 | 56524305 | 56524022 | ID=cds.MS.gene016330.t1;Parent=MS.gene016330.t1 |
Gene Sequence |
Protein sequence |