Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74365.t1 | XP_003628192.1 | 94.1 | 135 | 6 | 1 | 1 | 135 | 1 | 133 | 1.00E-68 | 269.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74365.t1 | Q941R6 | 38.9 | 131 | 76 | 4 | 3 | 130 | 20 | 149 | 1.7e-16 | 87.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74365.t1 | G7L7S7 | 94.1 | 135 | 6 | 1 | 1 | 135 | 1 | 133 | 7.4e-69 | 269.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74365.t1 | MTR_8g045400 | 94.074 | 135 | 6 | 1 | 1 | 135 | 1 | 133 | 2.97e-90 | 258 |
| MS.gene74365.t1 | MTR_8g045490 | 83.333 | 132 | 21 | 1 | 1 | 131 | 1 | 132 | 3.20e-78 | 228 |
| MS.gene74365.t1 | MTR_8g045520 | 80.882 | 136 | 23 | 2 | 1 | 135 | 1 | 134 | 1.02e-74 | 219 |
| MS.gene74365.t1 | MTR_8g045695 | 75.735 | 136 | 29 | 3 | 1 | 135 | 1 | 133 | 7.90e-70 | 207 |
| MS.gene74365.t1 | MTR_8g045570 | 75.000 | 132 | 32 | 1 | 1 | 131 | 1 | 132 | 9.95e-70 | 206 |
| MS.gene74365.t1 | MTR_8g045300 | 72.727 | 132 | 35 | 1 | 1 | 131 | 1 | 132 | 3.16e-66 | 198 |
| MS.gene74365.t1 | MTR_8g045735 | 71.324 | 136 | 35 | 3 | 1 | 135 | 1 | 133 | 4.53e-66 | 197 |
| MS.gene74365.t1 | MTR_8g045555 | 70.588 | 136 | 37 | 2 | 1 | 135 | 1 | 134 | 1.58e-65 | 196 |
| MS.gene74365.t1 | MTR_8g045665 | 72.794 | 136 | 33 | 3 | 1 | 135 | 1 | 133 | 8.73e-65 | 194 |
| MS.gene74365.t1 | MTR_8g045640 | 72.794 | 136 | 33 | 3 | 1 | 135 | 1 | 133 | 4.14e-64 | 192 |
| MS.gene74365.t1 | MTR_8g045560 | 71.324 | 136 | 35 | 3 | 1 | 135 | 1 | 133 | 9.18e-63 | 189 |
| MS.gene74365.t1 | MTR_1g030810 | 43.750 | 128 | 70 | 2 | 1 | 127 | 1 | 127 | 3.77e-31 | 108 |
| MS.gene74365.t1 | MTR_1g030820 | 39.062 | 128 | 76 | 2 | 1 | 127 | 1 | 127 | 3.65e-29 | 103 |
| MS.gene74365.t1 | MTR_1g030840 | 41.791 | 134 | 69 | 5 | 1 | 127 | 1 | 132 | 8.58e-24 | 90.9 |
| MS.gene74365.t1 | MTR_8g012550 | 36.220 | 127 | 77 | 4 | 6 | 130 | 8 | 132 | 2.84e-22 | 86.7 |
| MS.gene74365.t1 | MTR_1g031640 | 40.476 | 126 | 67 | 3 | 7 | 130 | 7 | 126 | 5.86e-22 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74365.t1 | AT1G70830 | 41.221 | 131 | 73 | 4 | 3 | 130 | 22 | 151 | 1.71e-21 | 85.1 |
| MS.gene74365.t1 | AT1G70830 | 40.909 | 132 | 74 | 4 | 3 | 131 | 22 | 152 | 3.76e-21 | 84.7 |
| MS.gene74365.t1 | AT1G70890 | 39.695 | 131 | 75 | 4 | 3 | 130 | 7 | 136 | 4.61e-21 | 83.6 |
| MS.gene74365.t1 | AT1G70830 | 41.221 | 131 | 73 | 4 | 3 | 130 | 22 | 151 | 9.07e-21 | 84.7 |
| MS.gene74365.t1 | AT5G28010 | 38.168 | 131 | 77 | 4 | 3 | 130 | 15 | 144 | 1.16e-20 | 82.8 |
| MS.gene74365.t1 | AT5G28010 | 38.168 | 131 | 77 | 4 | 3 | 130 | 15 | 144 | 1.16e-20 | 82.8 |
| MS.gene74365.t1 | AT1G70830 | 41.221 | 131 | 73 | 4 | 3 | 130 | 22 | 151 | 2.61e-20 | 85.1 |
| MS.gene74365.t1 | AT1G70830 | 40.458 | 131 | 74 | 4 | 3 | 130 | 184 | 313 | 1.74e-19 | 82.8 |
| MS.gene74365.t1 | AT1G70840 | 38.931 | 131 | 76 | 4 | 3 | 130 | 20 | 149 | 4.64e-20 | 81.3 |
| MS.gene74365.t1 | AT1G70830 | 40.458 | 131 | 74 | 4 | 3 | 130 | 137 | 266 | 7.20e-20 | 83.2 |
| MS.gene74365.t1 | AT1G23120 | 30.769 | 130 | 86 | 2 | 1 | 130 | 1 | 126 | 2.51e-19 | 79.0 |
| MS.gene74365.t1 | AT1G23120 | 31.200 | 125 | 82 | 2 | 7 | 131 | 57 | 177 | 6.80e-19 | 79.0 |
| MS.gene74365.t1 | AT1G70850 | 38.168 | 131 | 77 | 4 | 3 | 130 | 9 | 138 | 6.83e-18 | 77.0 |
| MS.gene74365.t1 | AT1G70850 | 38.168 | 131 | 77 | 4 | 3 | 130 | 9 | 138 | 2.18e-17 | 76.6 |
| MS.gene74365.t1 | AT1G70850 | 38.843 | 121 | 70 | 4 | 13 | 130 | 175 | 294 | 5.23e-16 | 73.2 |
| MS.gene74365.t1 | AT1G70850 | 38.168 | 131 | 77 | 4 | 3 | 130 | 9 | 138 | 2.18e-17 | 76.6 |
| MS.gene74365.t1 | AT1G70850 | 38.843 | 121 | 70 | 4 | 13 | 130 | 175 | 294 | 5.23e-16 | 73.2 |
| MS.gene74365.t1 | AT5G28000 | 36.842 | 133 | 79 | 5 | 3 | 131 | 13 | 144 | 1.32e-16 | 72.0 |
| MS.gene74365.t1 | AT1G23130 | 30.769 | 130 | 87 | 3 | 3 | 130 | 10 | 138 | 6.24e-16 | 70.5 |
| MS.gene74365.t1 | AT1G30990 | 31.538 | 130 | 87 | 2 | 1 | 129 | 1 | 129 | 8.88e-16 | 69.7 |
| MS.gene74365.t1 | AT1G70870 | 42.105 | 76 | 44 | 0 | 56 | 131 | 44 | 119 | 1.41e-15 | 68.9 |
| MS.gene74365.t1 | AT4G23670 | 34.091 | 132 | 85 | 2 | 1 | 131 | 1 | 131 | 2.22e-15 | 68.6 |
| MS.gene74365.t1 | AT2G01520 | 31.061 | 132 | 89 | 2 | 1 | 131 | 1 | 131 | 4.30e-15 | 67.8 |
| MS.gene74365.t1 | AT1G14930 | 29.771 | 131 | 90 | 2 | 1 | 130 | 1 | 130 | 2.95e-14 | 65.9 |
| MS.gene74365.t1 | AT2G01530 | 31.061 | 132 | 89 | 2 | 1 | 131 | 1 | 131 | 2.72e-13 | 63.2 |
| MS.gene74365.t1 | AT1G14940 | 28.244 | 131 | 92 | 2 | 1 | 130 | 1 | 130 | 8.30e-13 | 62.0 |
| MS.gene74365.t1 | AT4G23680 | 28.788 | 132 | 92 | 2 | 1 | 131 | 1 | 131 | 1.26e-12 | 61.6 |
| MS.gene74365.t1 | AT4G14060 | 29.545 | 132 | 91 | 2 | 1 | 131 | 1 | 131 | 1.42e-12 | 61.2 |
| MS.gene74365.t1 | AT1G14950 | 29.771 | 131 | 90 | 2 | 1 | 130 | 1 | 130 | 2.15e-12 | 60.8 |
| MS.gene74365.t1 | AT1G35310 | 30.769 | 117 | 77 | 4 | 13 | 127 | 12 | 126 | 4.78e-12 | 60.1 |
| MS.gene74365.t1 | AT1G14960 | 30.534 | 131 | 89 | 2 | 1 | 130 | 1 | 130 | 7.26e-12 | 59.7 |
Find 29 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATTAGTGAAAGAGTTCA+TGG | 0.367158 | 8.4:+55915792 | MS.gene74365:CDS |
| TAAGTCCATCCAGCCACATT+TGG | 0.397211 | 8.4:-55917773 | None:intergenic |
| AAGTTCAGTACTAAGTTTAC+CGG | 0.399540 | 8.4:-55915706 | None:intergenic |
| AAAATCACTTTCAAGCTCTT+CGG | 0.431537 | 8.4:+55917626 | MS.gene74365:CDS |
| ATCATTGAAGTAATTGATAA+TGG | 0.436398 | 8.4:+55917686 | MS.gene74365:CDS |
| ATGGCAGTGGAACTGCAAAA+TGG | 0.440864 | 8.4:+55917711 | MS.gene74365:CDS |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8.4:+55915861 | MS.gene74365:CDS |
| GTCCATCCAGCCACATTTGG+AGG | 0.472317 | 8.4:-55917770 | None:intergenic |
| AGACAATGATGAGCACTATA+AGG | 0.495099 | 8.4:+55917652 | MS.gene74365:CDS |
| TGTGGCTGGATGGACTTACT+AGG | 0.502143 | 8.4:+55917778 | MS.gene74365:CDS |
| AACTTCATGAAGGTGAAGAT+TGG | 0.510426 | 8.4:+55915820 | MS.gene74365:CDS |
| AGTTTGAAGAACTTGTCAAC+GGG | 0.514468 | 8.4:-55915741 | None:intergenic |
| AGATTGGCATCACACTGATT+CGG | 0.519723 | 8.4:+55915836 | MS.gene74365:CDS |
| ATCACTTTCAAGCTCTTCGG+TGG | 0.530357 | 8.4:+55917629 | MS.gene74365:CDS |
| ACCCTCCAAATGTGGCTGGA+TGG | 0.534761 | 8.4:+55917768 | MS.gene74365:CDS |
| CATTCAGAAATGGTGCTCGC+CGG | 0.538740 | 8.4:+55915687 | None:intergenic |
| ATTGACCCTCCAAATGTGGC+TGG | 0.543660 | 8.4:+55917764 | MS.gene74365:CDS |
| ATTGATAATGGTGATGGCAG+TGG | 0.548600 | 8.4:+55917698 | MS.gene74365:CDS |
| GGTAAACTTAGTACTGAACT+TGG | 0.549891 | 8.4:+55915708 | MS.gene74365:CDS |
| ATTGATCTTCTCATATTCAA+CGG | 0.576809 | 8.4:-55917735 | None:intergenic |
| TGGCATCACAATAGACGGTA+AGG | 0.584316 | 8.4:+55917559 | MS.gene74365:intron |
| TCCATCCAGCCACATTTGGA+GGG | 0.584716 | 8.4:-55917769 | None:intergenic |
| TAGTTTGAAGAACTTGTCAA+CGG | 0.604299 | 8.4:-55915742 | None:intergenic |
| ACACTGATTCGGTTAAACAC+TGG | 0.614381 | 8.4:+55915847 | MS.gene74365:CDS |
| GAAGTAATTGATAATGGTGA+TGG | 0.618480 | 8.4:+55917692 | MS.gene74365:CDS |
| GTAAACTTAGTACTGAACTT+GGG | 0.625486 | 8.4:+55915709 | MS.gene74365:CDS |
| CATGGTGCTAAACTTCATGA+AGG | 0.630860 | 8.4:+55915810 | MS.gene74365:CDS |
| GGATATTGACCCTCCAAATG+TGG | 0.699665 | 8.4:+55917760 | MS.gene74365:CDS |
| TGAATATGAGAAGATCAATG+AGG | 0.699788 | 8.4:+55917739 | MS.gene74365:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTAATTTAAT+TGG | + | chr8.4:55917519-55917538 | MS.gene74365:intron | 0.0% |
| !! | AAATTATAGAAATAATTGTA+TGG | + | chr8.4:55916885-55916904 | MS.gene74365:intron | 10.0% |
| !!! | TTGAATTATTTAAATTTTTC+GGG | + | chr8.4:55916405-55916424 | MS.gene74365:intron | 10.0% |
| !! | AATAATAAATACAATTTGTG+TGG | - | chr8.4:55916988-55917007 | None:intergenic | 15.0% |
| !! | ATAAATAAACAAAGATGATA+TGG | - | chr8.4:55915919-55915938 | None:intergenic | 15.0% |
| !! | ATAGAGTTATGAAAAAATTA+TGG | - | chr8.4:55917491-55917510 | None:intergenic | 15.0% |
| !! | CATAATCTTCTTATAAAATA+TGG | - | chr8.4:55915979-55915998 | None:intergenic | 15.0% |
| !! | TATATAAGATATATAGTACT+TGG | + | chr8.4:55917214-55917233 | MS.gene74365:intron | 15.0% |
| !!! | GATTTTATATAATTTTGTGT+TGG | - | chr8.4:55916594-55916613 | None:intergenic | 15.0% |
| !!! | TTTTGAGAAAAAAAAAATCA+AGG | - | chr8.4:55916937-55916956 | None:intergenic | 15.0% |
| !! | AAACAATGTATCTATTGTAT+CGG | - | chr8.4:55916745-55916764 | None:intergenic | 20.0% |
| !! | ACAATAGATACATTGTTTAA+GGG | + | chr8.4:55916747-55916766 | MS.gene74365:intron | 20.0% |
| !! | ACTTTATCTTTATCATCTTT+AGG | - | chr8.4:55916003-55916022 | None:intergenic | 20.0% |
| !! | ATCATTGAAGTAATTGATAA+TGG | + | chr8.4:55917686-55917705 | MS.gene74365:CDS | 20.0% |
| !! | ATTAAAAAACCAACGATTAT+AGG | - | chr8.4:55916629-55916648 | None:intergenic | 20.0% |
| !! | TACAATAGATACATTGTTTA+AGG | + | chr8.4:55916746-55916765 | MS.gene74365:intron | 20.0% |
| !! | TGCTCTTATTAATTGAATTA+TGG | - | chr8.4:55915950-55915969 | None:intergenic | 20.0% |
| !!! | AATTATTTAAATTTTTCGGG+TGG | + | chr8.4:55916408-55916427 | MS.gene74365:intron | 20.0% |
| !!! | AATTCAATTAATAAGAGCAT+AGG | + | chr8.4:55915951-55915970 | MS.gene74365:intron | 20.0% |
| !!! | ATTATTTAAATTTTTCGGGT+GGG | + | chr8.4:55916409-55916428 | MS.gene74365:intron | 20.0% |
| !!! | ATTCAATTAATAAGAGCATA+GGG | + | chr8.4:55915952-55915971 | MS.gene74365:intron | 20.0% |
| !!! | GAAAAATACACTTTGAAAAT+TGG | - | chr8.4:55917018-55917037 | None:intergenic | 20.0% |
| !!! | GACTTTAAACAATTTTTCAA+CGG | - | chr8.4:55916366-55916385 | None:intergenic | 20.0% |
| !!! | TAAAATTTTATGTCGGTTTT+AGG | - | chr8.4:55916473-55916492 | None:intergenic | 20.0% |
| !!! | TATAATTTTGTGTTGGTTTT+AGG | - | chr8.4:55916587-55916606 | None:intergenic | 20.0% |
| !!! | TTCTAAAACATCAAAAGAAA+AGG | + | chr8.4:55917108-55917127 | MS.gene74365:intron | 20.0% |
| !!! | TTCTAAAACATCAAAAGTTT+TGG | + | chr8.4:55917072-55917091 | MS.gene74365:intron | 20.0% |
| ! | AAAAAATCAAGGAGTAAGTA+AGG | - | chr8.4:55916926-55916945 | None:intergenic | 25.0% |
| ! | AAAAATCAAGGAGTAAGTAA+GGG | - | chr8.4:55916925-55916944 | None:intergenic | 25.0% |
| ! | AAACATCAAAAGAAAAGGAA+TGG | + | chr8.4:55917113-55917132 | MS.gene74365:intron | 25.0% |
| ! | AAACATCAAAAGAAAAGGAA+TGG | - | chr8.4:55917132-55917113 | None:intergenic | 25.0% |
| ! | AATAAACAAAGATGATATGG+AGG | - | chr8.4:55915916-55915935 | None:intergenic | 25.0% |
| ! | ACAATATACAGAAAAAGTGA+TGG | + | chr8.4:55916205-55916224 | MS.gene74365:intron | 25.0% |
| ! | ACCTAAAACATCAAAAGAAA+AGG | - | chr8.4:55916839-55916858 | None:intergenic | 25.0% |
| ! | ATAAATGCTAAATACCCATT+AGG | + | chr8.4:55917163-55917182 | MS.gene74365:intron | 25.0% |
| ! | ATCGACATCGTATATTTATA+CGG | - | chr8.4:55916126-55916145 | None:intergenic | 25.0% |
| ! | ATTGATCTTCTCATATTCAA+CGG | - | chr8.4:55917738-55917757 | None:intergenic | 25.0% |
| ! | TTATTATAATTGTGACGAGA+AGG | - | chr8.4:55916801-55916820 | None:intergenic | 25.0% |
| !! | ATTTTTGATGAACAACTGTA+AGG | + | chr8.4:55916294-55916313 | MS.gene74365:intron | 25.0% |
| !! | TATTGTCTCATTGATTGATT+TGG | - | chr8.4:55916191-55916210 | None:intergenic | 25.0% |
| !! | TCCTTTTCTTTTGATGTTTT+AGG | + | chr8.4:55916835-55916854 | MS.gene74365:intron | 25.0% |
| !! | TTTTCAACGGTTAATTTTAG+TGG | - | chr8.4:55916353-55916372 | None:intergenic | 25.0% |
| !!! | CAAAGTGTATTTTTCAACAA+GGG | + | chr8.4:55917023-55917042 | MS.gene74365:intron | 25.0% |
| !!! | CGTTGGTTTTTTAATTTTTC+CGG | + | chr8.4:55916634-55916653 | MS.gene74365:intron | 25.0% |
| !!! | GTTGGTTTTTTAATTTTTCC+GGG | + | chr8.4:55916635-55916654 | MS.gene74365:intron | 25.0% |
| !!! | TCAAAGTGTATTTTTCAACA+AGG | + | chr8.4:55917022-55917041 | MS.gene74365:intron | 25.0% |
| !!! | TTTTTCAACAAGGGTAAAAT+TGG | + | chr8.4:55917032-55917051 | MS.gene74365:intron | 25.0% |
| AAAATCACTTTCAAGCTCTT+CGG | + | chr8.4:55917626-55917645 | MS.gene74365:CDS | 30.0% | |
| AACATTAGTGAAAGAGTTCA+TGG | + | chr8.4:55915792-55915811 | MS.gene74365:CDS | 30.0% | |
| AAGTTCAGTACTAAGTTTAC+CGG | - | chr8.4:55915709-55915728 | None:intergenic | 30.0% | |
| AATACCCATTAGAAGATACA+TGG | + | chr8.4:55917260-55917279 | MS.gene74365:intron | 30.0% | |
| ATACCGCATCAATCAATATA+AGG | + | chr8.4:55916059-55916078 | MS.gene74365:intron | 30.0% | |
| ATCAAAAGAAAAGGAATGGA+GGG | - | chr8.4:55917136-55917117 | None:intergenic | 30.0% | |
| CAAAATAGACCTATAATCGT+TGG | + | chr8.4:55916617-55916636 | MS.gene74365:intron | 30.0% | |
| GTCTAATAAAAAACCCTTGA+GGG | + | chr8.4:55916716-55916735 | MS.gene74365:intron | 30.0% | |
| GTGGTGAGTTTCAATAATTA+AGG | - | chr8.4:55916969-55916988 | None:intergenic | 30.0% | |
| TACCGCATCAATCAATATAA+GGG | + | chr8.4:55916060-55916079 | MS.gene74365:intron | 30.0% | |
| TAGTTTGAAGAACTTGTCAA+CGG | - | chr8.4:55915745-55915764 | None:intergenic | 30.0% | |
| TCAACCATGTATCTTCTAAT+GGG | - | chr8.4:55917267-55917286 | None:intergenic | 30.0% | |
| TGAATATGAGAAGATCAATG+AGG | + | chr8.4:55917739-55917758 | MS.gene74365:CDS | 30.0% | |
| TGGTACTTATTAATTGCCTT+TGG | + | chr8.4:55917539-55917558 | MS.gene74365:intron | 30.0% | |
| ! | AAGATACATGGTTGACTTTA+TGG | + | chr8.4:55917272-55917291 | MS.gene74365:intron | 30.0% |
| ! | GTAAACTTAGTACTGAACTT+GGG | + | chr8.4:55915709-55915728 | MS.gene74365:CDS | 30.0% |
| !! | CAGAAAAAGTGATGGATTTA+TGG | + | chr8.4:55916213-55916232 | MS.gene74365:intron | 30.0% |
| !! | GAAGTAATTGATAATGGTGA+TGG | + | chr8.4:55917692-55917711 | MS.gene74365:CDS | 30.0% |
| !!! | GTTTTTTAATTTTTCCGGGT+GGG | + | chr8.4:55916639-55916658 | MS.gene74365:intron | 30.0% |
| !!! | TTTATGTCGGTTTTAGGTTT+CGG | - | chr8.4:55916467-55916486 | None:intergenic | 30.0% |
| !!! | TTTGTGTTGGTTTTAGGTTT+CGG | - | chr8.4:55916581-55916600 | None:intergenic | 30.0% |
| AAACACTGGACTTATGTCAT+AGG | + | chr8.4:55915861-55915880 | MS.gene74365:CDS | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | chr8.4:55915820-55915839 | MS.gene74365:CDS | 35.0% | |
| AGACAATGATGAGCACTATA+AGG | + | chr8.4:55917652-55917671 | MS.gene74365:CDS | 35.0% | |
| AGTTTGAAGAACTTGTCAAC+GGG | - | chr8.4:55915744-55915763 | None:intergenic | 35.0% | |
| CATCAAAAGAAAAGGAATGG+AGG | - | chr8.4:55917135-55917116 | None:intergenic | 35.0% | |
| CGTCTAATAAAAAACCCTTG+AGG | + | chr8.4:55916715-55916734 | MS.gene74365:intron | 35.0% | |
| GTCAACCATGTATCTTCTAA+TGG | - | chr8.4:55917268-55917287 | None:intergenic | 35.0% | |
| TATCACATGCATGTACTAGA+AGG | - | chr8.4:55917194-55917213 | None:intergenic | 35.0% | |
| ! | ATCTCTAGTTTAGGACTCTA+CGG | - | chr8.4:55917353-55917372 | None:intergenic | 35.0% |
| ! | CTCCCTTATATTGATTGATG+CGG | - | chr8.4:55916065-55916084 | None:intergenic | 35.0% |
| ! | GGTAAACTTAGTACTGAACT+TGG | + | chr8.4:55915708-55915727 | MS.gene74365:CDS | 35.0% |
| !! | ACTAGAAGGTATCTCCTAAT+GGG | - | chr8.4:55917180-55917199 | None:intergenic | 35.0% |
| !! | TACTAGAAGGTATCTCCTAA+TGG | - | chr8.4:55917181-55917200 | None:intergenic | 35.0% |
| !!! | CAAGGGTTTTTTATTAGACG+AGG | - | chr8.4:55916715-55916734 | None:intergenic | 35.0% |
| !!! | GGTTTTTTAATTTTTCCGGG+TGG | + | chr8.4:55916638-55916657 | MS.gene74365:intron | 35.0% |
| AGCCAGAAAAAAAGTTGGAG+TGG | + | chr8.4:55916326-55916345 | MS.gene74365:intron | 40.0% | |
| ATTGTATCGGAATCCCTCAA+GGG | - | chr8.4:55916732-55916751 | None:intergenic | 40.0% | |
| CCTAAACTAGAGATGTGAGA+AGG | + | chr8.4:55917359-55917378 | MS.gene74365:intron | 40.0% | |
| CGCATCAATCAATATAAGGG+AGG | + | chr8.4:55916063-55916082 | MS.gene74365:intron | 40.0% | |
| GCCAGAAAAAAAGTTGGAGT+GGG | + | chr8.4:55916327-55916346 | MS.gene74365:intron | 40.0% | |
| TACACTACTTTGCGGGAATT+TGG | + | chr8.4:55916550-55916569 | MS.gene74365:intron | 40.0% | |
| TATTGTATCGGAATCCCTCA+AGG | - | chr8.4:55916733-55916752 | None:intergenic | 40.0% | |
| ! | AGATTGGCATCACACTGATT+CGG | + | chr8.4:55915836-55915855 | MS.gene74365:CDS | 40.0% |
| ! | CATGGTGCTAAACTTCATGA+AGG | + | chr8.4:55915810-55915829 | MS.gene74365:CDS | 40.0% |
| ! | CCTTCTCACATCTCTAGTTT+AGG | - | chr8.4:55917362-55917381 | None:intergenic | 40.0% |
| !! | ACACTGATTCGGTTAAACAC+TGG | + | chr8.4:55915847-55915866 | MS.gene74365:CDS | 40.0% |
| !! | ATTGATAATGGTGATGGCAG+TGG | + | chr8.4:55917698-55917717 | MS.gene74365:CDS | 40.0% |
| ACCGTCTATTGTGATGCCAA+AGG | - | chr8.4:55917558-55917577 | None:intergenic | 45.0% | |
| ATAAGGGAGGATCTACGAAG+AGG | + | chr8.4:55916076-55916095 | MS.gene74365:intron | 45.0% | |
| ATCACTTTCAAGCTCTTCGG+TGG | + | chr8.4:55917629-55917648 | MS.gene74365:CDS | 45.0% | |
| ATGGCAGTGGAACTGCAAAA+TGG | + | chr8.4:55917711-55917730 | MS.gene74365:CDS | 45.0% | |
| ATTCCCGCAAAGTAGTGTAG+TGG | - | chr8.4:55916549-55916568 | None:intergenic | 45.0% | |
| GATGAACAACTGTAAGGCAG+TGG | + | chr8.4:55916300-55916319 | MS.gene74365:intron | 45.0% | |
| GCCTTTGGCATCACAATAGA+CGG | + | chr8.4:55917554-55917573 | MS.gene74365:intron | 45.0% | |
| GGATATTGACCCTCCAAATG+TGG | + | chr8.4:55917760-55917779 | MS.gene74365:CDS | 45.0% | |
| TAAGGGAGGATCTACGAAGA+GGG | + | chr8.4:55916077-55916096 | MS.gene74365:intron | 45.0% | |
| TAAGTCCATCCAGCCACATT+TGG | - | chr8.4:55917776-55917795 | None:intergenic | 45.0% | |
| TACACCACTTTGCGGGAATT+TGG | + | chr8.4:55916436-55916455 | MS.gene74365:intron | 45.0% | |
| TGATCCAAATTCCCGCAAAG+TGG | - | chr8.4:55916443-55916462 | None:intergenic | 45.0% | |
| TGGACCACTACACTACTTTG+CGG | + | chr8.4:55916542-55916561 | MS.gene74365:intron | 45.0% | |
| TGGCATCACAATAGACGGTA+AGG | + | chr8.4:55917559-55917578 | MS.gene74365:intron | 45.0% | |
| !!! | GCCCACTCCAACTTTTTTTC+TGG | - | chr8.4:55916331-55916350 | None:intergenic | 45.0% |
| !! | AATTTAAATAATTCAATTAT+AGG | - | chr8.4:55916401-55916420 | None:intergenic | 5.0% |
| !!! | ATTGAATTATTTAAATTTTT+CGG | + | chr8.4:55916404-55916423 | MS.gene74365:intron | 5.0% |
| !!! | TATTTTATAAAATTTTATGT+CGG | - | chr8.4:55916480-55916499 | None:intergenic | 5.0% |
| ATTCCCGCAAAGTGGTGTAG+TGG | - | chr8.4:55916435-55916454 | None:intergenic | 50.0% | |
| ATTGACCCTCCAAATGTGGC+TGG | + | chr8.4:55917764-55917783 | MS.gene74365:CDS | 50.0% | |
| GAACAACTGTAAGGCAGTGG+CGG | + | chr8.4:55916303-55916322 | MS.gene74365:intron | 50.0% | |
| GGACCACTACACTACTTTGC+GGG | + | chr8.4:55916543-55916562 | MS.gene74365:intron | 50.0% | |
| GGCGGAGCCAGAAAAAAAGT+TGG | + | chr8.4:55916321-55916340 | MS.gene74365:intron | 50.0% | |
| TCCATCCAGCCACATTTGGA+GGG | - | chr8.4:55917772-55917791 | None:intergenic | 50.0% | |
| ACCCTCCAAATGTGGCTGGA+TGG | + | chr8.4:55917768-55917787 | MS.gene74365:CDS | 55.0% | |
| CGAGGAATCCCTTACAGCAG+TGG | - | chr8.4:55916697-55916716 | None:intergenic | 55.0% | |
| GGAATCCCTTACAGCAGTGG+CGG | - | chr8.4:55916694-55916713 | None:intergenic | 55.0% | |
| GTCCATCCAGCCACATTTGG+AGG | - | chr8.4:55917773-55917792 | None:intergenic | 55.0% | |
| TGGGCCACTACACCACTTTG+CGG | + | chr8.4:55916428-55916447 | MS.gene74365:intron | 55.0% | |
| ! | TAATTTTTCCGGGTGGGCCG+TGG | + | chr8.4:55916645-55916664 | MS.gene74365:intron | 55.0% |
| GGGCCACTACACCACTTTGC+GGG | + | chr8.4:55916429-55916448 | MS.gene74365:intron | 60.0% | |
| AGGGCTCCGCCACTGCTGTA+AGG | + | chr8.4:55916685-55916704 | MS.gene74365:intron | 65.0% | |
| GGGCTCCGCCACTGCTGTAA+GGG | + | chr8.4:55916686-55916705 | MS.gene74365:intron | 65.0% | |
| ! | AGCAGTGGCGGAGCCCTTCA+TGG | - | chr8.4:55916682-55916701 | None:intergenic | 65.0% |
| ! | GCAGTGGCGGAGCCCTTCAT+GGG | - | chr8.4:55916681-55916700 | None:intergenic | 65.0% |
| !! | AGCCCTTCATGGGCTGGGGT+GGG | - | chr8.4:55916671-55916690 | None:intergenic | 65.0% |
| GGCCCACCCCAGCCCATGAA+GGG | + | chr8.4:55916666-55916685 | MS.gene74365:intron | 70.0% | |
| GGCGGAGCCCTTCATGGGCT+GGG | - | chr8.4:55916676-55916695 | None:intergenic | 70.0% | |
| TGGCCCACCCCAGCCCATGA+AGG | + | chr8.4:55916665-55916684 | MS.gene74365:intron | 70.0% | |
| TGGCGGAGCCCTTCATGGGC+TGG | - | chr8.4:55916677-55916696 | None:intergenic | 70.0% | |
| ! | GCGGAGCCCTTCATGGGCTG+GGG | - | chr8.4:55916675-55916694 | None:intergenic | 70.0% |
| !! | GAGCCCTTCATGGGCTGGGG+TGG | - | chr8.4:55916672-55916691 | None:intergenic | 70.0% |
| !! | TCATGGGCTGGGGTGGGCCA+CGG | - | chr8.4:55916665-55916684 | None:intergenic | 70.0% |
| ! | GGGGTGGGCCACGGCCCACC+CGG | - | chr8.4:55916656-55916675 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 55915696 | 55917799 | 55915696 | ID=MS.gene74365 |
| chr8.4 | mRNA | 55915696 | 55917799 | 55915696 | ID=MS.gene74365.t1;Parent=MS.gene74365 |
| chr8.4 | exon | 55915696 | 55915882 | 55915696 | ID=MS.gene74365.t1.exon1;Parent=MS.gene74365.t1 |
| chr8.4 | CDS | 55915696 | 55915882 | 55915696 | ID=cds.MS.gene74365.t1;Parent=MS.gene74365.t1 |
| chr8.4 | exon | 55917573 | 55917799 | 55917573 | ID=MS.gene74365.t1.exon2;Parent=MS.gene74365.t1 |
| chr8.4 | CDS | 55917573 | 55917799 | 55917573 | ID=cds.MS.gene74365.t1;Parent=MS.gene74365.t1 |
| Gene Sequence |
| Protein sequence |
