Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99548.t1 | XP_013445249.1 | 94.2 | 154 | 9 | 0 | 1 | 154 | 1 | 154 | 2.00E-81 | 311.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99548.t1 | Q9SSK5 | 37.3 | 153 | 92 | 4 | 3 | 152 | 7 | 158 | 2.5e-19 | 96.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99548.t1 | I3T217 | 94.2 | 154 | 9 | 0 | 1 | 154 | 1 | 154 | 1.5e-81 | 311.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99548.t1 | MTR_8g045735 | 94.156 | 154 | 9 | 0 | 1 | 154 | 1 | 154 | 3.09e-107 | 302 |
| MS.gene99548.t1 | MTR_8g045695 | 89.032 | 155 | 17 | 0 | 1 | 155 | 1 | 155 | 3.11e-102 | 290 |
| MS.gene99548.t1 | MTR_8g045665 | 84.516 | 155 | 24 | 0 | 1 | 155 | 1 | 155 | 1.56e-95 | 273 |
| MS.gene99548.t1 | MTR_8g045640 | 81.935 | 155 | 28 | 0 | 1 | 155 | 1 | 155 | 8.54e-92 | 263 |
| MS.gene99548.t1 | MTR_8g045560 | 80.645 | 155 | 30 | 0 | 1 | 155 | 1 | 155 | 1.12e-90 | 260 |
| MS.gene99548.t1 | MTR_8g045520 | 74.359 | 156 | 39 | 1 | 1 | 155 | 1 | 156 | 2.96e-83 | 242 |
| MS.gene99548.t1 | MTR_8g045490 | 71.242 | 153 | 43 | 1 | 1 | 152 | 1 | 153 | 1.97e-79 | 232 |
| MS.gene99548.t1 | MTR_8g045400 | 69.872 | 156 | 45 | 2 | 1 | 155 | 1 | 155 | 1.07e-77 | 228 |
| MS.gene99548.t1 | MTR_8g045570 | 67.763 | 152 | 48 | 1 | 1 | 151 | 1 | 152 | 1.39e-75 | 222 |
| MS.gene99548.t1 | MTR_8g045555 | 67.105 | 152 | 49 | 1 | 1 | 151 | 1 | 152 | 2.51e-74 | 219 |
| MS.gene99548.t1 | MTR_8g045300 | 64.744 | 156 | 54 | 1 | 1 | 155 | 1 | 156 | 1.13e-73 | 218 |
| MS.gene99548.t1 | MTR_1g030810 | 41.830 | 153 | 85 | 3 | 1 | 150 | 1 | 152 | 1.92e-38 | 128 |
| MS.gene99548.t1 | MTR_1g030820 | 38.562 | 153 | 90 | 3 | 1 | 150 | 1 | 152 | 1.13e-36 | 124 |
| MS.gene99548.t1 | MTR_1g030840 | 37.821 | 156 | 88 | 5 | 1 | 148 | 1 | 155 | 1.29e-27 | 101 |
| MS.gene99548.t1 | MTR_8g012550 | 33.333 | 150 | 96 | 4 | 6 | 153 | 8 | 155 | 2.35e-24 | 92.4 |
| MS.gene99548.t1 | MTR_1g031640 | 37.162 | 148 | 83 | 6 | 7 | 151 | 7 | 147 | 4.95e-21 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99548.t1 | AT5G28010 | 35.948 | 153 | 94 | 4 | 3 | 152 | 15 | 166 | 4.81e-25 | 94.7 |
| MS.gene99548.t1 | AT5G28010 | 35.948 | 153 | 94 | 4 | 3 | 152 | 15 | 166 | 4.81e-25 | 94.7 |
| MS.gene99548.t1 | AT1G70890 | 37.255 | 153 | 92 | 4 | 3 | 152 | 7 | 158 | 5.81e-24 | 91.7 |
| MS.gene99548.t1 | AT1G70840 | 35.948 | 153 | 94 | 4 | 3 | 152 | 20 | 171 | 2.54e-23 | 90.5 |
| MS.gene99548.t1 | AT1G70830 | 37.179 | 156 | 88 | 5 | 3 | 152 | 22 | 173 | 3.52e-23 | 90.1 |
| MS.gene99548.t1 | AT1G70830 | 36.943 | 157 | 89 | 5 | 3 | 153 | 22 | 174 | 4.61e-23 | 90.5 |
| MS.gene99548.t1 | AT1G70830 | 36.943 | 157 | 89 | 5 | 3 | 153 | 22 | 174 | 2.56e-22 | 89.7 |
| MS.gene99548.t1 | AT1G70830 | 37.179 | 156 | 88 | 5 | 3 | 152 | 137 | 288 | 4.91e-22 | 89.7 |
| MS.gene99548.t1 | AT1G70830 | 36.082 | 97 | 60 | 2 | 59 | 153 | 31 | 127 | 3.90e-12 | 62.8 |
| MS.gene99548.t1 | AT1G70830 | 36.943 | 157 | 89 | 5 | 3 | 153 | 22 | 174 | 5.63e-22 | 90.1 |
| MS.gene99548.t1 | AT1G70830 | 37.179 | 156 | 88 | 5 | 3 | 152 | 184 | 335 | 1.39e-21 | 89.0 |
| MS.gene99548.t1 | AT5G28000 | 33.333 | 153 | 98 | 4 | 3 | 152 | 13 | 164 | 7.80e-22 | 86.3 |
| MS.gene99548.t1 | AT1G70850 | 35.065 | 154 | 90 | 5 | 3 | 150 | 9 | 158 | 6.29e-21 | 85.9 |
| MS.gene99548.t1 | AT1G70850 | 35.294 | 153 | 89 | 5 | 3 | 149 | 9 | 157 | 1.72e-20 | 85.9 |
| MS.gene99548.t1 | AT1G70850 | 36.301 | 146 | 83 | 5 | 13 | 152 | 175 | 316 | 7.75e-20 | 84.3 |
| MS.gene99548.t1 | AT1G70850 | 35.294 | 153 | 89 | 5 | 3 | 149 | 9 | 157 | 1.72e-20 | 85.9 |
| MS.gene99548.t1 | AT1G70850 | 36.301 | 146 | 83 | 5 | 13 | 152 | 175 | 316 | 7.75e-20 | 84.3 |
| MS.gene99548.t1 | AT1G70870 | 43.750 | 96 | 52 | 2 | 56 | 150 | 44 | 138 | 7.21e-19 | 78.2 |
| MS.gene99548.t1 | AT1G14930 | 28.302 | 159 | 106 | 5 | 1 | 155 | 1 | 155 | 3.72e-18 | 76.6 |
| MS.gene99548.t1 | AT4G23670 | 31.875 | 160 | 91 | 6 | 1 | 151 | 1 | 151 | 5.67e-18 | 75.9 |
| MS.gene99548.t1 | AT2G01520 | 28.387 | 155 | 103 | 5 | 1 | 151 | 1 | 151 | 3.91e-17 | 73.9 |
| MS.gene99548.t1 | AT1G24020 | 30.921 | 152 | 102 | 3 | 1 | 150 | 1 | 151 | 5.83e-17 | 73.6 |
| MS.gene99548.t1 | AT1G24020 | 30.921 | 152 | 102 | 3 | 1 | 150 | 1 | 151 | 5.83e-17 | 73.6 |
| MS.gene99548.t1 | AT4G14060 | 29.032 | 155 | 102 | 5 | 1 | 151 | 1 | 151 | 2.06e-16 | 72.0 |
| MS.gene99548.t1 | AT2G01530 | 29.677 | 155 | 101 | 5 | 1 | 151 | 1 | 151 | 2.08e-16 | 72.0 |
| MS.gene99548.t1 | AT1G23120 | 27.660 | 141 | 96 | 4 | 10 | 149 | 10 | 145 | 3.55e-15 | 68.6 |
| MS.gene99548.t1 | AT1G70880 | 29.412 | 153 | 104 | 4 | 3 | 152 | 8 | 159 | 3.79e-15 | 68.9 |
| MS.gene99548.t1 | AT1G14940 | 27.044 | 159 | 108 | 5 | 1 | 155 | 1 | 155 | 9.95e-15 | 67.8 |
| MS.gene99548.t1 | AT1G23120 | 27.660 | 141 | 96 | 4 | 10 | 149 | 60 | 195 | 1.08e-14 | 68.6 |
| MS.gene99548.t1 | AT4G23680 | 27.922 | 154 | 103 | 5 | 1 | 150 | 1 | 150 | 1.30e-14 | 67.4 |
| MS.gene99548.t1 | AT1G14950 | 26.415 | 159 | 109 | 5 | 1 | 155 | 1 | 155 | 6.60e-14 | 65.5 |
| MS.gene99548.t1 | AT1G30990 | 27.152 | 151 | 105 | 5 | 1 | 149 | 1 | 148 | 1.75e-13 | 64.3 |
| MS.gene99548.t1 | AT3G26460 | 28.387 | 155 | 104 | 4 | 1 | 151 | 1 | 152 | 1.08e-12 | 62.4 |
| MS.gene99548.t1 | AT1G14960 | 24.516 | 155 | 113 | 4 | 1 | 153 | 1 | 153 | 1.63e-11 | 59.3 |
Find 31 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATGACCATCAATATCTT+TGG | 0.335693 | 8.1:-59600534 | None:intergenic |
| AAGATCACTTTCAAGCTGTT+TGG | 0.356858 | 8.1:+59600356 | MS.gene99548:CDS |
| ATGGAAATTCTGCTGTTAGA+TGG | 0.411619 | 8.1:+59600438 | MS.gene99548:CDS |
| AGGTAGTCCATCCAGCCATT+TGG | 0.456227 | 8.1:-59600500 | None:intergenic |
| ATCACTTTCAAGCTGTTTGG+TGG | 0.460728 | 8.1:+59600359 | MS.gene99548:CDS |
| AAAGGAACCAAAGATATTGA+TGG | 0.467555 | 8.1:+59600527 | MS.gene99548:CDS |
| GGTAAACTTATCACTGAACT+TGG | 0.495374 | 8.1:+59598858 | MS.gene99548:CDS |
| AGATTGGCATCACACTGATT+CGG | 0.509801 | 8.1:+59598986 | MS.gene99548:CDS |
| TATCTTTGGTTCCTTTGCTA+AGG | 0.518303 | 8.1:-59600520 | None:intergenic |
| TAAACACTGGACTTATGTCA+TGG | 0.531165 | 8.1:+59599010 | MS.gene99548:CDS |
| AGCTTCATGAAGGAGAAGAT+TGG | 0.532439 | 8.1:+59598970 | MS.gene99548:CDS |
| GAAGTGCTTAACAAGGCTGA+TGG | 0.573383 | 8.1:+59600419 | MS.gene99548:CDS |
| CATCATACTAAGCTTCATGA+AGG | 0.577072 | 8.1:+59598960 | MS.gene99548:CDS |
| ATGTTGATACTCCAAATGGC+TGG | 0.578150 | 8.1:+59600489 | MS.gene99548:CDS |
| ATTGATGGTCATCTTGTCAA+GGG | 0.586933 | 8.1:+59600542 | MS.gene99548:CDS |
| TGATACTCCAAATGGCTGGA+TGG | 0.587093 | 8.1:+59600493 | MS.gene99548:CDS |
| TATTGATGGTCATCTTGTCA+AGG | 0.589389 | 8.1:+59600541 | MS.gene99548:CDS |
| AAACACTGGACTTATGTCAT+GGG | 0.597721 | 8.1:+59599011 | MS.gene99548:CDS |
| ACACTGATTCGGTTAAACAC+TGG | 0.614381 | 8.1:+59598997 | MS.gene99548:CDS |
| GAGGATGTTGATACTCCAAA+TGG | 0.616840 | 8.1:+59600485 | MS.gene99548:CDS |
| GTAAACTTATCACTGAACTT+GGG | 0.617151 | 8.1:+59598859 | MS.gene99548:CDS |
| TGGTACACACATGCAATGAG+AGG | 0.624271 | 8.1:+59600306 | MS.gene99548:CDS |
| TATCATAACAACAGATGGTG+TGG | 0.633773 | 8.1:+59600286 | MS.gene99548:intron |
| CATCTTAGAAGTGCTTAACA+AGG | 0.644958 | 8.1:+59600412 | MS.gene99548:CDS |
| TTGATGGTCATCTTGTCAAG+GGG | 0.646397 | 8.1:+59600543 | MS.gene99548:CDS |
| TGGATGGACTACCTTAGCAA+AGG | 0.650698 | 8.1:+59600509 | MS.gene99548:CDS |
| GAACTTGGGATCAAAACACC+CGG | 0.651017 | 8.1:+59598873 | MS.gene99548:CDS |
| CACATGCAATGAGAGGGTTG+AGG | 0.659985 | 8.1:+59600313 | MS.gene99548:CDS |
| TGATGGTCATCTTGTCAAGG+GGG | 0.696400 | 8.1:+59600544 | MS.gene99548:CDS |
| TGATTATGAGAAGAACAGTG+AGG | 0.735998 | 8.1:+59600466 | MS.gene99548:CDS |
| GGTACACACATGCAATGAGA+GGG | 0.748427 | 8.1:+59600307 | MS.gene99548:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CGTAAAATTAAATAAAAAAA+GGG | + | chr8.1:59599388-59599407 | MS.gene99548:intron | 10.0% |
| !! | TTAAAGTAATATTGAAAATA+AGG | - | chr8.1:59600229-59600248 | None:intergenic | 10.0% |
| !!! | AAAATGTTTTTTATTGTTTT+TGG | + | chr8.1:59600250-59600269 | MS.gene99548:intron | 10.0% |
| !! | ACTAATTAAGGATTTAAAAA+AGG | + | chr8.1:59600074-59600093 | MS.gene99548:intron | 15.0% |
| !! | ATTATAAATGAAGTCAATAT+AGG | - | chr8.1:59599239-59599258 | None:intergenic | 15.0% |
| !! | GCGTAAAATTAAATAAAAAA+AGG | + | chr8.1:59599387-59599406 | MS.gene99548:intron | 15.0% |
| !! | TTTCACTTGTAAAAAAAAAA+AGG | - | chr8.1:59599970-59599989 | None:intergenic | 15.0% |
| !!! | TAAAATAATGTTTCTACTTT+TGG | + | chr8.1:59600165-59600184 | MS.gene99548:intron | 15.0% |
| !!! | TATAAAAGTCAAACTTTTAT+CGG | + | chr8.1:59599878-59599897 | MS.gene99548:intron | 15.0% |
| !! | ATCAAAAATCAAATATCACA+AGG | - | chr8.1:59599849-59599868 | None:intergenic | 20.0% |
| !! | ATCATAAAAACCTAATGATA+AGG | - | chr8.1:59600001-59600020 | None:intergenic | 20.0% |
| !! | ATTTATCTTTCTAGATCTAA+CGG | + | chr8.1:59599539-59599558 | MS.gene99548:intron | 20.0% |
| !! | TATTACATACAACTCATATA+GGG | - | chr8.1:59599483-59599502 | None:intergenic | 20.0% |
| !! | TTGATACTATCATAATAATC+TGG | + | chr8.1:59599126-59599145 | MS.gene99548:intron | 20.0% |
| !!! | GTTTCTTAACAAATGTTTTA+AGG | + | chr8.1:59600187-59600206 | MS.gene99548:intron | 20.0% |
| !!! | TGGTGAAACTAATATTTTTA+AGG | + | chr8.1:59600026-59600045 | MS.gene99548:intron | 20.0% |
| !!! | TTAGGTTTTTATGATTTCTT+TGG | + | chr8.1:59600006-59600025 | MS.gene99548:intron | 20.0% |
| ! | AATAATGCATCCTTATCATT+AGG | + | chr8.1:59599988-59600007 | MS.gene99548:intron | 25.0% |
| ! | ATTACATACAACTCATATAG+GGG | - | chr8.1:59599482-59599501 | None:intergenic | 25.0% |
| ! | ATTGCCTTTATAAGTTCTTT+AGG | - | chr8.1:59599153-59599172 | None:intergenic | 25.0% |
| ! | CTATTACATACAACTCATAT+AGG | - | chr8.1:59599484-59599503 | None:intergenic | 25.0% |
| !!! | TATTTGATTTTTGATCCTTG+TGG | + | chr8.1:59599854-59599873 | MS.gene99548:intron | 25.0% |
| AAAGGAACCAAAGATATTGA+TGG | + | chr8.1:59600527-59600546 | MS.gene99548:CDS | 30.0% | |
| AAGATGACCATCAATATCTT+TGG | - | chr8.1:59600537-59600556 | None:intergenic | 30.0% | |
| AATCAAACAAGATGATGACA+TGG | - | chr8.1:59599068-59599087 | None:intergenic | 30.0% | |
| CATTGTATGGATTTATGCTT+AGG | + | chr8.1:59599447-59599466 | MS.gene99548:intron | 30.0% | |
| GCAATGGATAAGTAATTACA+TGG | + | chr8.1:59599664-59599683 | MS.gene99548:intron | 30.0% | |
| GCTAAATTTAGTGCATTGTA+TGG | + | chr8.1:59599434-59599453 | MS.gene99548:intron | 30.0% | |
| GTAAACTTATCACTGAACTT+GGG | + | chr8.1:59598859-59598878 | MS.gene99548:CDS | 30.0% | |
| TATGCTAACAAGTGTCTTTA+GGG | + | chr8.1:59600050-59600069 | MS.gene99548:intron | 30.0% | |
| TGGACCTAAAGAACTTATAA+AGG | + | chr8.1:59599146-59599165 | MS.gene99548:intron | 30.0% | |
| TTATGCTAACAAGTGTCTTT+AGG | + | chr8.1:59600049-59600068 | MS.gene99548:intron | 30.0% | |
| ! | AGCGAAACTTGTTCAATTTA+CGG | - | chr8.1:59599767-59599786 | None:intergenic | 30.0% |
| ! | TAGTTTGAAGAACTTTTCAC+CGG | - | chr8.1:59598895-59598914 | None:intergenic | 30.0% |
| ! | TGATTTTAAACTATCCTGTG+AGG | + | chr8.1:59599728-59599747 | MS.gene99548:intron | 30.0% |
| !! | AATTTTTCGTTTTAGCGCAA+TGG | + | chr8.1:59599648-59599667 | MS.gene99548:intron | 30.0% |
| !! | GTTGTATGTAATAGTTCTAG+TGG | + | chr8.1:59599490-59599509 | MS.gene99548:intron | 30.0% |
| !! | GTTTGACTTTTATAACCACA+AGG | - | chr8.1:59599872-59599891 | None:intergenic | 30.0% |
| AAACACTGGACTTATGTCAT+GGG | + | chr8.1:59599011-59599030 | MS.gene99548:CDS | 35.0% | |
| AACAAGTTTCGCTATCTTGT+CGG | + | chr8.1:59599774-59599793 | MS.gene99548:intron | 35.0% | |
| AAGATCACTTTCAAGCTGTT+TGG | + | chr8.1:59600356-59600375 | MS.gene99548:CDS | 35.0% | |
| ACCATCTGTTGTTATGATAG+AGG | - | chr8.1:59600285-59600304 | None:intergenic | 35.0% | |
| ATGGAAATTCTGCTGTTAGA+TGG | + | chr8.1:59600438-59600457 | MS.gene99548:CDS | 35.0% | |
| CATCATACTAAGCTTCATGA+AGG | + | chr8.1:59598960-59598979 | MS.gene99548:CDS | 35.0% | |
| GGTAAACTTATCACTGAACT+TGG | + | chr8.1:59598858-59598877 | MS.gene99548:CDS | 35.0% | |
| TAAACACTGGACTTATGTCA+TGG | + | chr8.1:59599010-59599029 | MS.gene99548:CDS | 35.0% | |
| TAATTACATGGCACGTATCT+AGG | + | chr8.1:59599676-59599695 | MS.gene99548:intron | 35.0% | |
| TATCATAACAACAGATGGTG+TGG | + | chr8.1:59600286-59600305 | MS.gene99548:intron | 35.0% | |
| TCCTCTATCATAACAACAGA+TGG | + | chr8.1:59600281-59600300 | MS.gene99548:intron | 35.0% | |
| TGATTATGAGAAGAACAGTG+AGG | + | chr8.1:59600466-59600485 | MS.gene99548:CDS | 35.0% | |
| ! | AATTCAAGTTCGAGTTCAAG+TGG | + | chr8.1:59599599-59599618 | MS.gene99548:intron | 35.0% |
| ! | AGTTTGAAGAACTTTTCACC+GGG | - | chr8.1:59598894-59598913 | None:intergenic | 35.0% |
| ! | ATTGATGGTCATCTTGTCAA+GGG | + | chr8.1:59600542-59600561 | MS.gene99548:CDS | 35.0% |
| ! | GTTTAACTTTGTAACCTCAC+AGG | - | chr8.1:59599745-59599764 | None:intergenic | 35.0% |
| ! | TATCTTTGGTTCCTTTGCTA+AGG | - | chr8.1:59600523-59600542 | None:intergenic | 35.0% |
| ! | TATTGATGGTCATCTTGTCA+AGG | + | chr8.1:59600541-59600560 | MS.gene99548:CDS | 35.0% |
| !! | CATCTTAGAAGTGCTTAACA+AGG | + | chr8.1:59600412-59600431 | MS.gene99548:CDS | 35.0% |
| !! | TGTCTTTAGGGCACTAATTA+AGG | + | chr8.1:59600062-59600081 | MS.gene99548:intron | 35.0% |
| AGCTTCATGAAGGAGAAGAT+TGG | + | chr8.1:59598970-59598989 | MS.gene99548:CDS | 40.0% | |
| AGTTCAAGTGGATGATTGAG+GGG | + | chr8.1:59599611-59599630 | MS.gene99548:intron | 40.0% | |
| ATCACTTTCAAGCTGTTTGG+TGG | + | chr8.1:59600359-59600378 | MS.gene99548:CDS | 40.0% | |
| ATGTTGATACTCCAAATGGC+TGG | + | chr8.1:59600489-59600508 | MS.gene99548:CDS | 40.0% | |
| CCAAGAGATGTTGTGCTTTA+TGG | + | chr8.1:59599807-59599826 | MS.gene99548:intron | 40.0% | |
| CCATAAAGCACAACATCTCT+TGG | - | chr8.1:59599810-59599829 | None:intergenic | 40.0% | |
| GAGGATGTTGATACTCCAAA+TGG | + | chr8.1:59600485-59600504 | MS.gene99548:CDS | 40.0% | |
| GAGTTCAAGTGGATGATTGA+GGG | + | chr8.1:59599610-59599629 | MS.gene99548:intron | 40.0% | |
| ! | AGATTGGCATCACACTGATT+CGG | + | chr8.1:59598986-59599005 | MS.gene99548:CDS | 40.0% |
| ! | TTGATGGTCATCTTGTCAAG+GGG | + | chr8.1:59600543-59600562 | MS.gene99548:CDS | 40.0% |
| !! | ACACTGATTCGGTTAAACAC+TGG | + | chr8.1:59598997-59599016 | MS.gene99548:CDS | 40.0% |
| CGAGTTCAAGTGGATGATTG+AGG | + | chr8.1:59599609-59599628 | MS.gene99548:intron | 45.0% | |
| GAACTTGGGATCAAAACACC+CGG | + | chr8.1:59598873-59598892 | MS.gene99548:CDS | 45.0% | |
| GGTACACACATGCAATGAGA+GGG | + | chr8.1:59600307-59600326 | MS.gene99548:CDS | 45.0% | |
| TCATCTTGTCAAGGGGGAAA+AGG | + | chr8.1:59600550-59600569 | MS.gene99548:CDS | 45.0% | |
| TGATACTCCAAATGGCTGGA+TGG | + | chr8.1:59600493-59600512 | MS.gene99548:CDS | 45.0% | |
| TGATGGTCATCTTGTCAAGG+GGG | + | chr8.1:59600544-59600563 | MS.gene99548:CDS | 45.0% | |
| TGGTACACACATGCAATGAG+AGG | + | chr8.1:59600306-59600325 | MS.gene99548:CDS | 45.0% | |
| ! | ATTGAGGGGTAGTCTTGACT+CGG | + | chr8.1:59599625-59599644 | MS.gene99548:intron | 45.0% |
| ! | GAAGTGCTTAACAAGGCTGA+TGG | + | chr8.1:59600419-59600438 | MS.gene99548:CDS | 45.0% |
| !! | TGGATGGACTACCTTAGCAA+AGG | + | chr8.1:59600509-59600528 | MS.gene99548:CDS | 45.0% |
| !!! | TTTTATTTATTAATGTATTA+TGG | - | chr8.1:59599324-59599343 | None:intergenic | 5.0% |
| AGGTAGTCCATCCAGCCATT+TGG | - | chr8.1:59600503-59600522 | None:intergenic | 50.0% | |
| ATTCCCCCACATGAGTTGCT+CGG | - | chr8.1:59599582-59599601 | None:intergenic | 50.0% | |
| CACATGCAATGAGAGGGTTG+AGG | + | chr8.1:59600313-59600332 | MS.gene99548:CDS | 50.0% | |
| CTATGCCGAGCAACTCATGT+GGG | + | chr8.1:59599574-59599593 | MS.gene99548:intron | 50.0% | |
| TATGCCGAGCAACTCATGTG+GGG | + | chr8.1:59599575-59599594 | MS.gene99548:intron | 50.0% | |
| ATGCCGAGCAACTCATGTGG+GGG | + | chr8.1:59599576-59599595 | MS.gene99548:intron | 55.0% | |
| CATGAGTTGCTCGGCATAGC+AGG | - | chr8.1:59599573-59599592 | None:intergenic | 55.0% | |
| GCTATGCCGAGCAACTCATG+TGG | + | chr8.1:59599573-59599592 | MS.gene99548:intron | 55.0% | |
| TTGCTCGGCATAGCAGGTGT+GGG | - | chr8.1:59599567-59599586 | None:intergenic | 55.0% | |
| GTTGCTCGGCATAGCAGGTG+TGG | - | chr8.1:59599568-59599587 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 59598846 | 59600583 | 59598846 | ID=MS.gene99548 |
| chr8.1 | mRNA | 59598846 | 59600583 | 59598846 | ID=MS.gene99548.t1;Parent=MS.gene99548 |
| chr8.1 | exon | 59598846 | 59599032 | 59598846 | ID=MS.gene99548.t1.exon1;Parent=MS.gene99548.t1 |
| chr8.1 | CDS | 59598846 | 59599032 | 59598846 | ID=cds.MS.gene99548.t1;Parent=MS.gene99548.t1 |
| chr8.1 | exon | 59600300 | 59600583 | 59600300 | ID=MS.gene99548.t1.exon2;Parent=MS.gene99548.t1 |
| chr8.1 | CDS | 59600300 | 59600583 | 59600300 | ID=cds.MS.gene99548.t1;Parent=MS.gene99548.t1 |
| Gene Sequence |
| Protein sequence |
