Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016327.t1 | XP_003628200.1 | 91.7 | 156 | 13 | 0 | 45 | 200 | 1 | 156 | 2.20E-80 | 308.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016327.t1 | Q9SSK5 | 36.9 | 149 | 91 | 3 | 47 | 193 | 7 | 154 | 9.9e-21 | 101.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016327.t1 | G7L7T5 | 91.7 | 156 | 13 | 0 | 45 | 200 | 1 | 156 | 1.6e-80 | 308.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016327.t1 | MTR_8g045490 | 91.667 | 156 | 13 | 0 | 45 | 200 | 1 | 156 | 2.28e-105 | 300 |
| MS.gene016327.t1 | MTR_8g045520 | 82.166 | 157 | 27 | 1 | 45 | 200 | 1 | 157 | 5.46e-93 | 268 |
| MS.gene016327.t1 | MTR_8g045400 | 78.344 | 157 | 32 | 2 | 45 | 200 | 1 | 156 | 2.81e-88 | 256 |
| MS.gene016327.t1 | MTR_8g045570 | 75.658 | 152 | 37 | 0 | 45 | 196 | 1 | 152 | 2.26e-85 | 249 |
| MS.gene016327.t1 | MTR_8g045695 | 75.163 | 153 | 37 | 1 | 45 | 197 | 1 | 152 | 1.11e-83 | 244 |
| MS.gene016327.t1 | MTR_8g045555 | 75.000 | 152 | 38 | 0 | 45 | 196 | 1 | 152 | 3.59e-82 | 241 |
| MS.gene016327.t1 | MTR_8g045300 | 71.154 | 156 | 44 | 1 | 45 | 199 | 1 | 156 | 1.32e-81 | 239 |
| MS.gene016327.t1 | MTR_8g045735 | 69.935 | 153 | 45 | 1 | 45 | 197 | 1 | 152 | 3.75e-78 | 231 |
| MS.gene016327.t1 | MTR_8g045665 | 70.588 | 153 | 44 | 1 | 45 | 197 | 1 | 152 | 4.21e-77 | 228 |
| MS.gene016327.t1 | MTR_8g045640 | 69.935 | 153 | 45 | 1 | 45 | 197 | 1 | 152 | 1.79e-76 | 226 |
| MS.gene016327.t1 | MTR_8g045560 | 68.627 | 153 | 47 | 1 | 45 | 197 | 1 | 152 | 9.49e-75 | 222 |
| MS.gene016327.t1 | MTR_1g030810 | 43.137 | 153 | 84 | 2 | 45 | 195 | 1 | 152 | 3.66e-39 | 132 |
| MS.gene016327.t1 | MTR_1g030820 | 40.523 | 153 | 88 | 2 | 45 | 195 | 1 | 152 | 1.62e-38 | 130 |
| MS.gene016327.t1 | MTR_1g030840 | 37.179 | 156 | 90 | 4 | 45 | 193 | 1 | 155 | 3.03e-27 | 101 |
| MS.gene016327.t1 | MTR_8g012550 | 33.562 | 146 | 94 | 3 | 50 | 194 | 8 | 151 | 4.21e-25 | 95.9 |
| MS.gene016327.t1 | MTR_1g031640 | 37.162 | 148 | 84 | 5 | 51 | 196 | 7 | 147 | 2.28e-23 | 91.3 |
| MS.gene016327.t1 | MTR_5g095740 | 88.372 | 43 | 5 | 0 | 1 | 43 | 1 | 43 | 1.26e-19 | 82.4 |
| MS.gene016327.t1 | MTR_3g058980 | 70.213 | 47 | 10 | 1 | 1 | 43 | 1 | 47 | 1.33e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016327.t1 | AT5G28010 | 35.526 | 152 | 95 | 3 | 44 | 193 | 12 | 162 | 6.77e-25 | 95.9 |
| MS.gene016327.t1 | AT5G28010 | 35.526 | 152 | 95 | 3 | 44 | 193 | 12 | 162 | 6.77e-25 | 95.9 |
| MS.gene016327.t1 | AT1G70890 | 36.913 | 149 | 91 | 3 | 47 | 193 | 7 | 154 | 1.62e-24 | 94.7 |
| MS.gene016327.t1 | AT1G70840 | 32.886 | 149 | 97 | 3 | 47 | 193 | 20 | 167 | 2.59e-22 | 89.4 |
| MS.gene016327.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 47 | 193 | 22 | 169 | 1.52e-21 | 87.4 |
| MS.gene016327.t1 | AT5G28000 | 33.121 | 157 | 101 | 4 | 39 | 193 | 6 | 160 | 2.69e-21 | 86.3 |
| MS.gene016327.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 47 | 193 | 22 | 169 | 3.42e-21 | 87.0 |
| MS.gene016327.t1 | AT1G23120 | 30.872 | 149 | 98 | 3 | 45 | 193 | 1 | 144 | 4.35e-21 | 85.5 |
| MS.gene016327.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 47 | 193 | 22 | 169 | 9.34e-21 | 87.0 |
| MS.gene016327.t1 | AT1G23120 | 31.469 | 143 | 93 | 3 | 51 | 193 | 57 | 194 | 1.46e-20 | 85.5 |
| MS.gene016327.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 47 | 193 | 22 | 169 | 2.54e-20 | 87.0 |
| MS.gene016327.t1 | AT1G70830 | 32.468 | 154 | 101 | 3 | 42 | 193 | 179 | 331 | 4.47e-19 | 84.0 |
| MS.gene016327.t1 | AT1G70870 | 35.762 | 151 | 84 | 4 | 45 | 195 | 1 | 138 | 3.73e-20 | 82.8 |
| MS.gene016327.t1 | AT1G70850 | 31.875 | 160 | 103 | 4 | 36 | 193 | 1 | 156 | 9.54e-20 | 84.0 |
| MS.gene016327.t1 | AT1G70830 | 32.468 | 154 | 101 | 3 | 42 | 193 | 132 | 284 | 1.15e-19 | 84.7 |
| MS.gene016327.t1 | AT1G70850 | 31.875 | 160 | 103 | 4 | 36 | 193 | 1 | 156 | 2.31e-19 | 84.3 |
| MS.gene016327.t1 | AT1G70850 | 32.374 | 139 | 91 | 3 | 57 | 193 | 175 | 312 | 3.02e-17 | 78.6 |
| MS.gene016327.t1 | AT1G70850 | 31.875 | 160 | 103 | 4 | 36 | 193 | 1 | 156 | 2.31e-19 | 84.3 |
| MS.gene016327.t1 | AT1G70850 | 32.374 | 139 | 91 | 3 | 57 | 193 | 175 | 312 | 3.02e-17 | 78.6 |
| MS.gene016327.t1 | AT4G23670 | 34.641 | 153 | 97 | 3 | 45 | 196 | 1 | 151 | 1.05e-18 | 79.3 |
| MS.gene016327.t1 | AT1G70880 | 30.201 | 149 | 101 | 3 | 47 | 193 | 8 | 155 | 8.07e-18 | 77.0 |
| MS.gene016327.t1 | AT1G23130 | 29.054 | 148 | 103 | 2 | 47 | 193 | 10 | 156 | 3.05e-17 | 75.5 |
| MS.gene016327.t1 | AT2G01520 | 30.719 | 153 | 103 | 3 | 45 | 196 | 1 | 151 | 6.30e-16 | 72.0 |
| MS.gene016327.t1 | AT4G23680 | 30.719 | 153 | 103 | 3 | 45 | 196 | 1 | 151 | 1.03e-15 | 71.2 |
| MS.gene016327.t1 | AT1G14930 | 31.677 | 161 | 93 | 5 | 45 | 197 | 1 | 152 | 1.19e-15 | 71.2 |
| MS.gene016327.t1 | AT1G35260 | 28.276 | 145 | 100 | 3 | 51 | 193 | 6 | 148 | 1.69e-15 | 70.9 |
| MS.gene016327.t1 | AT4G14060 | 31.373 | 153 | 102 | 3 | 45 | 196 | 1 | 151 | 1.29e-14 | 68.6 |
| MS.gene016327.t1 | AT2G01530 | 30.719 | 153 | 103 | 3 | 45 | 196 | 1 | 151 | 1.38e-14 | 68.6 |
| MS.gene016327.t1 | AT1G24020 | 32.026 | 153 | 100 | 3 | 45 | 195 | 1 | 151 | 1.97e-13 | 65.5 |
| MS.gene016327.t1 | AT1G24020 | 32.026 | 153 | 100 | 3 | 45 | 195 | 1 | 151 | 1.97e-13 | 65.5 |
| MS.gene016327.t1 | AT1G35310 | 26.087 | 138 | 99 | 3 | 57 | 193 | 12 | 147 | 4.13e-13 | 64.3 |
| MS.gene016327.t1 | AT1G30990 | 30.667 | 150 | 100 | 4 | 45 | 193 | 1 | 147 | 1.61e-12 | 62.8 |
| MS.gene016327.t1 | AT1G14940 | 29.333 | 150 | 103 | 3 | 45 | 193 | 1 | 148 | 8.36e-12 | 61.2 |
| MS.gene016327.t1 | AT1G14950 | 28.289 | 152 | 106 | 3 | 45 | 195 | 1 | 150 | 2.96e-11 | 59.7 |
| MS.gene016327.t1 | AT3G26460 | 30.769 | 156 | 100 | 6 | 45 | 196 | 1 | 152 | 6.37e-11 | 58.5 |
Find 36 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCACCTTCATGAAGTT+TGG | 0.293563 | 8.2:-56499532 | None:intergenic |
| ATGGCACTGCTGCTGCTAAA+TGG | 0.310932 | 8.2:+56501506 | MS.gene016327:CDS |
| AACTCGCTGTTCGCGGCGTT+CGG | 0.373131 | 8.2:-56498677 | None:intergenic |
| CACCCTTATCAATTACTTCA+AGG | 0.382574 | 8.2:-56501483 | None:intergenic |
| TTATAGAGCTATCTTTGCTT+TGG | 0.392094 | 8.2:-56501626 | None:intergenic |
| CGCGGCGTTCGGTGCTCCTC+CGG | 0.414332 | 8.2:-56498666 | None:intergenic |
| CATCCTTGAAGTAATTGATA+AGG | 0.438738 | 8.2:+56501480 | MS.gene016327:CDS |
| AAGTATTCCATGTAGCCATT+TGG | 0.448595 | 8.2:-56501568 | None:intergenic |
| AACACTTATAAGCTCTTTGG+TGG | 0.457999 | 8.2:+56501424 | MS.gene016327:CDS |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8.2:+56499576 | MS.gene016327:CDS |
| AACTTCATGAAGGTGAAGAT+TGG | 0.483425 | 8.2:+56499535 | MS.gene016327:CDS |
| ATCCTTGAAGTAATTGATAA+GGG | 0.486541 | 8.2:+56501481 | MS.gene016327:CDS |
| GCTGATTCAAACAATGAATC+CGG | 0.500174 | 8.2:+56498647 | MS.gene016327:CDS |
| AGATATTGATGAGCACTATA+AGG | 0.500590 | 8.2:+56501447 | MS.gene016327:CDS |
| TATTCCATGTAGCCATTTGG+AGG | 0.517921 | 8.2:-56501565 | None:intergenic |
| ATTCTGCTCACGTTTGCAAT+CGG | 0.519071 | 8.2:-56498728 | None:intergenic |
| AGATTGGCATCACACTGATT+CGG | 0.519723 | 8.2:+56499551 | MS.gene016327:CDS |
| AATGGCTACATGGAATACTT+TGG | 0.525683 | 8.2:+56501571 | MS.gene016327:CDS |
| TGACCCTCCAAATGGCTACA+TGG | 0.526835 | 8.2:+56501561 | MS.gene016327:CDS |
| GGTAAGCTTAGTACTGAAGT+TGG | 0.532755 | 8.2:+56499423 | MS.gene016327:CDS |
| GAGGATATTGACCCTCCAAA+TGG | 0.540200 | 8.2:+56501553 | MS.gene016327:CDS |
| TGGTGATAACTCGCTGTTCG+CGG | 0.542261 | 8.2:-56498684 | None:intergenic |
| GAAGTAATTGATAAGGGTGA+TGG | 0.549119 | 8.2:+56501487 | MS.gene016327:CDS |
| CGTTTGCAATCGGTAGGAAT+CGG | 0.550409 | 8.2:-56498718 | None:intergenic |
| TATGATGAACTCTTTCACAA+AGG | 0.564152 | 8.2:-56499509 | None:intergenic |
| CATCATACCAAACTTCATGA+AGG | 0.595182 | 8.2:+56499525 | MS.gene016327:CDS |
| AGGAATCGGTCTTGTTCTCG+TGG | 0.612848 | 8.2:-56498704 | None:intergenic |
| ACACTGATTCGGTTAAACAC+TGG | 0.614381 | 8.2:+56499562 | MS.gene016327:CDS |
| ATAATTCACAACAGATGGCA+AGG | 0.621271 | 8.2:+56501351 | MS.gene016327:intron |
| AGATTGTAGAACTTGTCAGC+GGG | 0.623742 | 8.2:-56499456 | None:intergenic |
| ATTCCATGTAGCCATTTGGA+GGG | 0.625101 | 8.2:-56501564 | None:intergenic |
| TGCTCACGTTTGCAATCGGT+AGG | 0.636069 | 8.2:-56498724 | None:intergenic |
| TTCAAAGAAATGGTGCTCTG+TGG | 0.636927 | 8.2:+56499402 | MS.gene016327:intron |
| GATTCAAACAATGAATCCGG+AGG | 0.688681 | 8.2:+56498650 | MS.gene016327:CDS |
| TAGATTGTAGAACTTGTCAG+CGG | 0.690373 | 8.2:-56499457 | None:intergenic |
| TGAATATGAGAAGATCAATG+AGG | 0.699788 | 8.2:+56501534 | MS.gene016327:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTATACAAAAATATTTAT+TGG | + | chr8.2:56501068-56501087 | MS.gene016327:intron | 10.0% |
| !!! | ATAGTTTATTTGTTAAAAAA+TGG | + | chr8.2:56501108-56501127 | MS.gene016327:intron | 10.0% |
| !!! | GGAATAATAAATATTTTATA+AGG | - | chr8.2:56501042-56501061 | None:intergenic | 10.0% |
| !!! | TAGTTTATTTGTTAAAAAAT+GGG | + | chr8.2:56501109-56501128 | MS.gene016327:intron | 10.0% |
| !!! | TATTTTTGTATAGAAAAAAA+AGG | - | chr8.2:56501063-56501082 | None:intergenic | 10.0% |
| !!! | TGTTGTTTTTTTTTTTTTTT+AGG | - | chr8.2:56500521-56500540 | None:intergenic | 10.0% |
| !! | AAAAAAAAACAACAATCATT+TGG | + | chr8.2:56500527-56500546 | MS.gene016327:intron | 15.0% |
| !! | AAAAAAAACAACAATCATTT+GGG | + | chr8.2:56500528-56500547 | MS.gene016327:intron | 15.0% |
| !! | AAAATTTGTGAATTAAAAGA+AGG | + | chr8.2:56499830-56499849 | MS.gene016327:intron | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr8.2:56500740-56500759 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr8.2:56500739-56500758 | MS.gene016327:intron | 15.0% |
| !!! | AAAATTGCATTTTTTTTGTT+AGG | + | chr8.2:56500060-56500079 | MS.gene016327:intron | 15.0% |
| !!! | AAATTGCATTGTTTTTATTA+AGG | - | chr8.2:56499906-56499925 | None:intergenic | 15.0% |
| !!! | AAATTGCATTTTTTTTGTTA+GGG | + | chr8.2:56500061-56500080 | MS.gene016327:intron | 15.0% |
| !!! | AATTGCATTGTTTTTATTAA+GGG | - | chr8.2:56499905-56499924 | None:intergenic | 15.0% |
| !!! | TAAGCAAAAAACTATATTTT+AGG | + | chr8.2:56501180-56501199 | MS.gene016327:intron | 15.0% |
| !!! | TATTGATTATTATACAATAG+AGG | - | chr8.2:56499289-56499308 | None:intergenic | 15.0% |
| !! | AATCAAATAAGATGATGATT+TGG | - | chr8.2:56499715-56499734 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr8.2:56500653-56500672 | None:intergenic | 20.0% |
| !! | AGATTATAAGATCTCAAAAA+AGG | + | chr8.2:56500900-56500919 | MS.gene016327:intron | 20.0% |
| !! | CTTATATTTCTTCAAAGAAA+TGG | + | chr8.2:56499392-56499411 | MS.gene016327:intron | 20.0% |
| !!! | AATTGCATTTTTTTTGTTAG+GGG | + | chr8.2:56500062-56500081 | MS.gene016327:intron | 20.0% |
| !!! | AGTATTTAAAACTTTAAGAG+AGG | - | chr8.2:56500559-56500578 | None:intergenic | 20.0% |
| !!! | ATTGCATTGTTTTTATTAAG+GGG | - | chr8.2:56499904-56499923 | None:intergenic | 20.0% |
| !!! | TCGTTTTAAAAGTAATACTT+TGG | - | chr8.2:56500716-56500735 | None:intergenic | 20.0% |
| ! | AAAAACACTTATAAGCTCTT+TGG | + | chr8.2:56501421-56501440 | MS.gene016327:CDS | 25.0% |
| ! | AAACGAACCAATAGTTAATA+AGG | + | chr8.2:56500730-56500749 | MS.gene016327:intron | 25.0% |
| ! | AACCACAGTTATTCTTTATA+TGG | - | chr8.2:56501017-56501036 | None:intergenic | 25.0% |
| ! | AACCATATAAAGAATAACTG+TGG | + | chr8.2:56501012-56501031 | MS.gene016327:intron | 25.0% |
| ! | ATAAGAAAGAAACAAGTACA+TGG | + | chr8.2:56500139-56500158 | MS.gene016327:intron | 25.0% |
| ! | ATCCTTGAAGTAATTGATAA+GGG | + | chr8.2:56501481-56501500 | MS.gene016327:CDS | 25.0% |
| ! | TTTGGGAAGAAAAAAAATCA+GGG | - | chr8.2:56500362-56500381 | None:intergenic | 25.0% |
| !! | AGAAAACCATTAAGTAGTTT+TGG | + | chr8.2:56498854-56498873 | MS.gene016327:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | + | chr8.2:56501279-56501298 | MS.gene016327:intron | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | - | chr8.2:56501170-56501189 | None:intergenic | 25.0% |
| !!! | AACTTTTTTGCAAAGATAAG+GGG | + | chr8.2:56499994-56500013 | MS.gene016327:intron | 25.0% |
| !!! | ATGATTGTTGATTTGTCATT+AGG | - | chr8.2:56500491-56500510 | None:intergenic | 25.0% |
| !!! | ATTGCATTTTTTTTGTTAGG+GGG | + | chr8.2:56500063-56500082 | MS.gene016327:intron | 25.0% |
| !!! | CAACTTTTTTGCAAAGATAA+GGG | + | chr8.2:56499993-56500012 | MS.gene016327:intron | 25.0% |
| !!! | TTTTGGGAAGAAAAAAAATC+AGG | - | chr8.2:56500363-56500382 | None:intergenic | 25.0% |
| AAACCATTTCCACAGAAAAA+TGG | + | chr8.2:56499003-56499022 | MS.gene016327:intron | 30.0% | |
| AACCATTTCCACAGAAAAAT+GGG | + | chr8.2:56499004-56499023 | MS.gene016327:intron | 30.0% | |
| AAGCATAGCTGGAAAAATTA+GGG | - | chr8.2:56499935-56499954 | None:intergenic | 30.0% | |
| AGAGCATATTTCTCTAAACA+TGG | + | chr8.2:56500022-56500041 | MS.gene016327:intron | 30.0% | |
| AGATATTGATGAGCACTATA+AGG | + | chr8.2:56501447-56501466 | MS.gene016327:CDS | 30.0% | |
| ATTGCTACAATGACAAACAT+AGG | - | chr8.2:56499876-56499895 | None:intergenic | 30.0% | |
| ATTTGTCATTAGGTTCTATG+GGG | - | chr8.2:56500481-56500500 | None:intergenic | 30.0% | |
| CACTCAATTAATGATGTATG+TGG | + | chr8.2:56501205-56501224 | MS.gene016327:intron | 30.0% | |
| CATCCTTGAAGTAATTGATA+AGG | + | chr8.2:56501480-56501499 | MS.gene016327:CDS | 30.0% | |
| CGGGAAATATAATCATTCAT+AGG | + | chr8.2:56500445-56500464 | MS.gene016327:intron | 30.0% | |
| CTCTAAACATGGCAAAAATA+GGG | + | chr8.2:56500033-56500052 | MS.gene016327:intron | 30.0% | |
| GATTTGTCATTAGGTTCTAT+GGG | - | chr8.2:56500482-56500501 | None:intergenic | 30.0% | |
| TATGATGAACTCTTTCACAA+AGG | - | chr8.2:56499512-56499531 | None:intergenic | 30.0% | |
| TCTAAACATGGCAAAAATAG+GGG | + | chr8.2:56500034-56500053 | MS.gene016327:intron | 30.0% | |
| TCTCTAAACATGGCAAAAAT+AGG | + | chr8.2:56500032-56500051 | MS.gene016327:intron | 30.0% | |
| TGAATATGAGAAGATCAATG+AGG | + | chr8.2:56501534-56501553 | MS.gene016327:CDS | 30.0% | |
| TGCAATCCGATTTCTATATA+AGG | + | chr8.2:56499313-56499332 | MS.gene016327:intron | 30.0% | |
| TGTACTCCAAAACTACTTAA+TGG | - | chr8.2:56498863-56498882 | None:intergenic | 30.0% | |
| TTAAGCATCTATCGTCAAAA+TGG | - | chr8.2:56500387-56500406 | None:intergenic | 30.0% | |
| TTATAGAGCTATCTTTGCTT+TGG | - | chr8.2:56501629-56501648 | None:intergenic | 30.0% | |
| TTGCAAAAAAGTTGCGATTA+CGG | - | chr8.2:56499987-56500006 | None:intergenic | 30.0% | |
| TTGCTACAATGACAAACATA+GGG | - | chr8.2:56499875-56499894 | None:intergenic | 30.0% | |
| TTGGGAAGAAAAAAAATCAG+GGG | - | chr8.2:56500361-56500380 | None:intergenic | 30.0% | |
| ! | CTATCGTCAAAATGGTTTTT+GGG | - | chr8.2:56500379-56500398 | None:intergenic | 30.0% |
| ! | GTTTGTCATTGTAGCAATTT+TGG | + | chr8.2:56499878-56499897 | MS.gene016327:intron | 30.0% |
| ! | TCTATCGTCAAAATGGTTTT+TGG | - | chr8.2:56500380-56500399 | None:intergenic | 30.0% |
| ! | TGATTTGTCATTAGGTTCTA+TGG | - | chr8.2:56500483-56500502 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr8.2:56500822-56500841 | MS.gene016327:intron | 30.0% |
| !! | AAGCGACACTCATTTTAAAA+TGG | - | chr8.2:56500586-56500605 | None:intergenic | 30.0% |
| !!! | GACACTCATTTTAAAATGGA+GGG | - | chr8.2:56500582-56500601 | None:intergenic | 30.0% |
| !!! | GCAACTTTTTTGCAAAGATA+AGG | + | chr8.2:56499992-56500011 | MS.gene016327:intron | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr8.2:56500821-56500840 | None:intergenic | 30.0% |
| AAACACTGGACTTATGTCAT+AGG | + | chr8.2:56499576-56499595 | MS.gene016327:CDS | 35.0% | |
| AAACCATTTCCACAGCAAAA+TGG | + | chr8.2:56499046-56499065 | MS.gene016327:intron | 35.0% | |
| AACACTTATAAGCTCTTTGG+TGG | + | chr8.2:56501424-56501443 | MS.gene016327:CDS | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | chr8.2:56499535-56499554 | MS.gene016327:CDS | 35.0% | |
| AAGTATTCCATGTAGCCATT+TGG | - | chr8.2:56501571-56501590 | None:intergenic | 35.0% | |
| AATGGCTACATGGAATACTT+TGG | + | chr8.2:56501571-56501590 | MS.gene016327:CDS | 35.0% | |
| ACTTTCATCAACTCACTCAT+TGG | + | chr8.2:56499351-56499370 | MS.gene016327:intron | 35.0% | |
| AGCATAGCTGGAAAAATTAG+GGG | - | chr8.2:56499934-56499953 | None:intergenic | 35.0% | |
| ATAATTCACAACAGATGGCA+AGG | + | chr8.2:56501351-56501370 | MS.gene016327:intron | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | - | chr8.2:56499535-56499554 | None:intergenic | 35.0% | |
| ATTAGGTTCTATGGGGAATA+TGG | - | chr8.2:56500474-56500493 | None:intergenic | 35.0% | |
| CAAGCATAGCTGGAAAAATT+AGG | - | chr8.2:56499936-56499955 | None:intergenic | 35.0% | |
| CACCCTTATCAATTACTTCA+AGG | - | chr8.2:56501486-56501505 | None:intergenic | 35.0% | |
| CATCATACCAAACTTCATGA+AGG | + | chr8.2:56499525-56499544 | MS.gene016327:CDS | 35.0% | |
| CCATCATAATTCACAACAGA+TGG | + | chr8.2:56501346-56501365 | MS.gene016327:intron | 35.0% | |
| CCATCTGTTGTGAATTATGA+TGG | - | chr8.2:56501349-56501368 | None:intergenic | 35.0% | |
| CTAAACATGGCAAAAATAGG+GGG | + | chr8.2:56500035-56500054 | MS.gene016327:intron | 35.0% | |
| GAAGTAATTGATAAGGGTGA+TGG | + | chr8.2:56501487-56501506 | MS.gene016327:CDS | 35.0% | |
| GATGATGAGATTGAAGATTC+TGG | + | chr8.2:56498980-56498999 | MS.gene016327:intron | 35.0% | |
| GCCATGCCTTATATAGAAAT+CGG | - | chr8.2:56499322-56499341 | None:intergenic | 35.0% | |
| TACATTCGACAAACCAAACA+TGG | + | chr8.2:56500332-56500351 | MS.gene016327:intron | 35.0% | |
| TAGATTGTAGAACTTGTCAG+CGG | - | chr8.2:56499460-56499479 | None:intergenic | 35.0% | |
| TCCGATTTCTATATAAGGCA+TGG | + | chr8.2:56499318-56499337 | MS.gene016327:intron | 35.0% | |
| TGCTACAATGACAAACATAG+GGG | - | chr8.2:56499874-56499893 | None:intergenic | 35.0% | |
| TGTTGTGAATTATGATGGCA+CGG | - | chr8.2:56501344-56501363 | None:intergenic | 35.0% | |
| TTCAATCTCATCATCAACAC+CGG | - | chr8.2:56498975-56498994 | None:intergenic | 35.0% | |
| ! | CTAATTTTTCCAGCTATGCT+TGG | + | chr8.2:56499934-56499953 | MS.gene016327:intron | 35.0% |
| ! | GCTGATTCAAACAATGAATC+CGG | + | chr8.2:56498647-56498666 | MS.gene016327:CDS | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr8.2:56500691-56500710 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr8.2:56500687-56500706 | None:intergenic | 35.0% |
| ! | TTTCCACAGAAAAATGGGTT+TGG | + | chr8.2:56499009-56499028 | MS.gene016327:intron | 35.0% |
| ! | TTTCCACAGCAAAATGGTTT+TGG | + | chr8.2:56498912-56498931 | MS.gene016327:intron | 35.0% |
| !! | AAACCATTTTGCTGTGGAAA+TGG | - | chr8.2:56498912-56498931 | None:intergenic | 35.0% |
| !! | AACCCATTTTTCTGTGGAAA+TGG | - | chr8.2:56499009-56499028 | None:intergenic | 35.0% |
| !! | TGATGATTTGGTTATCGATC+AGG | - | chr8.2:56499703-56499722 | None:intergenic | 35.0% |
| !!! | CGACACTCATTTTAAAATGG+AGG | - | chr8.2:56500583-56500602 | None:intergenic | 35.0% |
| AAATCAGGGGTAACCATGTT+TGG | - | chr8.2:56500348-56500367 | None:intergenic | 40.0% | |
| AACATAGTCAAAGGGAGAAG+AGG | - | chr8.2:56500422-56500441 | None:intergenic | 40.0% | |
| AGATTGTAGAACTTGTCAGC+GGG | - | chr8.2:56499459-56499478 | None:intergenic | 40.0% | |
| AGGACTTCTAGACAAGTACA+TGG | + | chr8.2:56500277-56500296 | MS.gene016327:intron | 40.0% | |
| ATTCCATGTAGCCATTTGGA+GGG | - | chr8.2:56501567-56501586 | None:intergenic | 40.0% | |
| ATTCTGCTCACGTTTGCAAT+CGG | - | chr8.2:56498731-56498750 | None:intergenic | 40.0% | |
| CATAGCTGGAAAAATTAGGG+GGG | - | chr8.2:56499932-56499951 | None:intergenic | 40.0% | |
| CGTTGGGATTTATGCACATA+AGG | + | chr8.2:56499202-56499221 | MS.gene016327:intron | 40.0% | |
| CTCCCTTTGACTATGTTGAA+CGG | + | chr8.2:56500425-56500444 | MS.gene016327:intron | 40.0% | |
| CTCGAAAGATGCTAAGGAAA+CGG | + | chr8.2:56498784-56498803 | MS.gene016327:intron | 40.0% | |
| GAAGATCTCGAAAGATGCTA+AGG | + | chr8.2:56498778-56498797 | MS.gene016327:intron | 40.0% | |
| GATGAGATTGAAGATTCCAG+TGG | + | chr8.2:56499114-56499133 | MS.gene016327:intron | 40.0% | |
| GATTCAAACAATGAATCCGG+AGG | + | chr8.2:56498650-56498669 | MS.gene016327:CDS | 40.0% | |
| GCATAGCTGGAAAAATTAGG+GGG | - | chr8.2:56499933-56499952 | None:intergenic | 40.0% | |
| GCTACAATGACAAACATAGG+GGG | - | chr8.2:56499873-56499892 | None:intergenic | 40.0% | |
| GGAAAACCAGATGCACTTAA+TGG | - | chr8.2:56498897-56498916 | None:intergenic | 40.0% | |
| GTGTAGGAAGCAATTACGTT+GGG | + | chr8.2:56499186-56499205 | MS.gene016327:intron | 40.0% | |
| GTTGTGAATTATGATGGCAC+GGG | - | chr8.2:56501343-56501362 | None:intergenic | 40.0% | |
| TAAACTCACACACAGCTGTA+AGG | + | chr8.2:56500191-56500210 | MS.gene016327:intron | 40.0% | |
| TAGTTGCTATATACACCCTC+CGG | + | chr8.2:56501148-56501167 | MS.gene016327:intron | 40.0% | |
| TATTCCATGTAGCCATTTGG+AGG | - | chr8.2:56501568-56501587 | None:intergenic | 40.0% | |
| TCAAATCGCAAATGCCGAAA+TGG | - | chr8.2:56500254-56500273 | None:intergenic | 40.0% | |
| TCCCGTTCAACATAGTCAAA+GGG | - | chr8.2:56500430-56500449 | None:intergenic | 40.0% | |
| TCCCTTTGACTATGTTGAAC+GGG | + | chr8.2:56500426-56500445 | MS.gene016327:intron | 40.0% | |
| TGAAAACTTTGTACACCCTC+CGG | - | chr8.2:56501301-56501320 | None:intergenic | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr8.2:56501283-56501302 | MS.gene016327:intron | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | - | chr8.2:56501166-56501185 | None:intergenic | 40.0% | |
| TGGAAACCATTAAGTGCATC+TGG | + | chr8.2:56498888-56498907 | MS.gene016327:intron | 40.0% | |
| TTAGGGGGTCAAAATTGCTA+CGG | + | chr8.2:56500078-56500097 | MS.gene016327:intron | 40.0% | |
| TTCAAAGAAATGGTGCTCTG+TGG | + | chr8.2:56499402-56499421 | MS.gene016327:intron | 40.0% | |
| TTCCCGTTCAACATAGTCAA+AGG | - | chr8.2:56500431-56500450 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr8.2:56501282-56501301 | MS.gene016327:intron | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | - | chr8.2:56501167-56501186 | None:intergenic | 40.0% | |
| ! | AGATTGGCATCACACTGATT+CGG | + | chr8.2:56499551-56499570 | MS.gene016327:CDS | 40.0% |
| ! | ATGCCAAAACCATTTTGCTG+TGG | - | chr8.2:56498918-56498937 | None:intergenic | 40.0% |
| ! | ATGCGAAAACCATTTTGCTG+TGG | - | chr8.2:56499058-56499077 | None:intergenic | 40.0% |
| ! | GCAAAATGGTTTTCGCATTC+CGG | + | chr8.2:56499060-56499079 | MS.gene016327:intron | 40.0% |
| ! | GGTAAGCTTAGTACTGAAGT+TGG | + | chr8.2:56499423-56499442 | MS.gene016327:CDS | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr8.2:56500688-56500707 | None:intergenic | 40.0% |
| !! | ACACTGATTCGGTTAAACAC+TGG | + | chr8.2:56499562-56499581 | MS.gene016327:CDS | 40.0% |
| !! | ACTCCAAACCCATTTTTCTG+TGG | - | chr8.2:56499015-56499034 | None:intergenic | 40.0% |
| !! | CAGTTTGTTTTCGCGTTTTG+AGG | + | chr8.2:56499164-56499183 | MS.gene016327:intron | 40.0% |
| !! | GAGTGAGTTGATGAAAGTGT+AGG | - | chr8.2:56499349-56499368 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr8.2:56500826-56500845 | MS.gene016327:intron | 40.0% |
| !!! | TAGTTTTGGAGTACAACTGC+TGG | + | chr8.2:56498868-56498887 | MS.gene016327:intron | 40.0% |
| !!! | TCTGGTTTTCCACAGCAAAA+TGG | + | chr8.2:56498906-56498925 | MS.gene016327:intron | 40.0% |
| ATAGTCAAAGGGAGAAGAGG+TGG | - | chr8.2:56500419-56500438 | None:intergenic | 45.0% | |
| CATCACCGTCATCATCGTAT+CGG | - | chr8.2:56498942-56498961 | None:intergenic | 45.0% | |
| CGGCATTTGCGATTTGAACT+AGG | + | chr8.2:56500257-56500276 | MS.gene016327:intron | 45.0% | |
| CGTTTGCAATCGGTAGGAAT+CGG | - | chr8.2:56498721-56498740 | None:intergenic | 45.0% | |
| GAGGATATTGACCCTCCAAA+TGG | + | chr8.2:56501553-56501572 | MS.gene016327:CDS | 45.0% | |
| GCAATTGAAAACAGAACCGC+CGG | - | chr8.2:56498826-56498845 | None:intergenic | 45.0% | |
| GCATTCCGATACGATGATGA+CGG | + | chr8.2:56498934-56498953 | MS.gene016327:intron | 45.0% | |
| GGTGTAGGAAGCAATTACGT+TGG | + | chr8.2:56499185-56499204 | MS.gene016327:intron | 45.0% | |
| GTTCATCATCATCACCGTAC+CGG | - | chr8.2:56499082-56499101 | None:intergenic | 45.0% | |
| TCGTTCATCATCATCACCAC+TGG | - | chr8.2:56499133-56499152 | None:intergenic | 45.0% | |
| TTATGCGCTATAACCACTCC+CGG | + | chr8.2:56499231-56499250 | MS.gene016327:intron | 45.0% | |
| ! | ACGGTGATGATGATGAACGA+CGG | + | chr8.2:56499084-56499103 | MS.gene016327:intron | 45.0% |
| ! | ATGGTTTTCGCATTCCGGTA+CGG | + | chr8.2:56499065-56499084 | MS.gene016327:intron | 45.0% |
| ! | GTGGTGATGATGATGAACGA+CGG | + | chr8.2:56499133-56499152 | MS.gene016327:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr8.2:56500825-56500844 | MS.gene016327:intron | 45.0% |
| !!! | GTTTTCGCGTTTTGAGGTGT+AGG | + | chr8.2:56499170-56499189 | MS.gene016327:intron | 45.0% |
| AAATGCCGAAATGGCAAGGC+CGG | - | chr8.2:56500245-56500264 | None:intergenic | 50.0% | |
| ACACACAGCTGTAAGGTCTC+GGG | + | chr8.2:56500198-56500217 | MS.gene016327:intron | 50.0% | |
| AGATGCTAAGGAAACGGTGC+AGG | + | chr8.2:56498790-56498809 | MS.gene016327:intron | 50.0% | |
| ATGGCACTGCTGCTGCTAAA+TGG | + | chr8.2:56501506-56501525 | MS.gene016327:CDS | 50.0% | |
| CAAACCCGAATCACGACATC+CGG | + | chr8.2:56500223-56500242 | MS.gene016327:intron | 50.0% | |
| CACACACAGCTGTAAGGTCT+CGG | + | chr8.2:56500197-56500216 | MS.gene016327:intron | 50.0% | |
| CGGTGCAGGAATGTGATTTC+CGG | + | chr8.2:56498804-56498823 | MS.gene016327:intron | 50.0% | |
| GGGAGTGGTTATAGCGCATA+AGG | - | chr8.2:56499232-56499251 | None:intergenic | 50.0% | |
| TATATGTGTGCTCTCCCACC+CGG | - | chr8.2:56499253-56499272 | None:intergenic | 50.0% | |
| TATGCGCTATAACCACTCCC+GGG | + | chr8.2:56499232-56499251 | MS.gene016327:intron | 50.0% | |
| TCGCAAATGCCGAAATGGCA+AGG | - | chr8.2:56500249-56500268 | None:intergenic | 50.0% | |
| TGACCCTCCAAATGGCTACA+TGG | + | chr8.2:56501561-56501580 | MS.gene016327:CDS | 50.0% | |
| TGCAGGAATGTGATTTCCGG+CGG | + | chr8.2:56498807-56498826 | MS.gene016327:intron | 50.0% | |
| TGCTCACGTTTGCAATCGGT+AGG | - | chr8.2:56498727-56498746 | None:intergenic | 50.0% | |
| TGGTGATAACTCGCTGTTCG+CGG | - | chr8.2:56498687-56498706 | None:intergenic | 50.0% | |
| TTCGAGATCTTCGCACTCGT+CGG | - | chr8.2:56498770-56498789 | None:intergenic | 50.0% | |
| ! | ACGGTGATGATGATGAACGC+CGG | + | chr8.2:56498953-56498972 | MS.gene016327:intron | 50.0% |
| !! | AGGAATCGGTCTTGTTCTCG+TGG | - | chr8.2:56498707-56498726 | None:intergenic | 50.0% |
| !!! | GCGATTACGGCCCCTTTTTT+GGG | - | chr8.2:56499974-56499993 | None:intergenic | 50.0% |
| !!! | TGCGATTACGGCCCCTTTTT+TGG | - | chr8.2:56499975-56499994 | None:intergenic | 50.0% |
| AAGGCCGGATGTCGTGATTC+GGG | - | chr8.2:56500230-56500249 | None:intergenic | 55.0% | |
| ATATGTGTGCTCTCCCACCC+GGG | - | chr8.2:56499252-56499271 | None:intergenic | 55.0% | |
| CAAGGCCGGATGTCGTGATT+CGG | - | chr8.2:56500231-56500250 | None:intergenic | 55.0% | |
| CCGCCACGTGTCCCAAAAAA+GGG | + | chr8.2:56499960-56499979 | MS.gene016327:intron | 55.0% | |
| CGCCACGTGTCCCAAAAAAG+GGG | + | chr8.2:56499961-56499980 | MS.gene016327:intron | 55.0% | |
| GCTACGGCGGCAAACATAGA+GGG | + | chr8.2:56500094-56500113 | MS.gene016327:intron | 55.0% | |
| GGGGGTCAAAATTGCTACGG+CGG | + | chr8.2:56500081-56500100 | MS.gene016327:intron | 55.0% | |
| TGCTACGGCGGCAAACATAG+AGG | + | chr8.2:56500093-56500112 | MS.gene016327:intron | 55.0% | |
| ! | GACATCCGGCCTTGCCATTT+CGG | + | chr8.2:56500237-56500256 | MS.gene016327:intron | 55.0% |
| !!! | CCCTTTTTTGGGACACGTGG+CGG | - | chr8.2:56499963-56499982 | None:intergenic | 55.0% |
| AACTCGCTGTTCGCGGCGTT+CGG | - | chr8.2:56498680-56498699 | None:intergenic | 60.0% | |
| CGCTATAACCACTCCCGGGT+GGG | + | chr8.2:56499236-56499255 | MS.gene016327:intron | 60.0% | |
| GCCGCCACGTGTCCCAAAAA+AGG | + | chr8.2:56499959-56499978 | MS.gene016327:intron | 60.0% | |
| TGGCGGCTTCCAAGCATAGC+TGG | - | chr8.2:56499946-56499965 | None:intergenic | 60.0% | |
| !!! | GGCCCCTTTTTTGGGACACG+TGG | - | chr8.2:56499966-56499985 | None:intergenic | 60.0% |
| GCGCTATAACCACTCCCGGG+TGG | + | chr8.2:56499235-56499254 | MS.gene016327:intron | 65.0% | |
| TGTGCTCTCCCACCCGGGAG+TGG | - | chr8.2:56499247-56499266 | None:intergenic | 70.0% | |
| !! | CGCGGCGTTCGGTGCTCCTC+CGG | - | chr8.2:56498669-56498688 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 56498644 | 56501648 | 56498644 | ID=MS.gene016327 |
| chr8.2 | mRNA | 56498644 | 56501648 | 56498644 | ID=MS.gene016327.t1;Parent=MS.gene016327 |
| chr8.2 | exon | 56498644 | 56498773 | 56498644 | ID=MS.gene016327.t1.exon1;Parent=MS.gene016327.t1 |
| chr8.2 | CDS | 56498644 | 56498773 | 56498644 | ID=cds.MS.gene016327.t1;Parent=MS.gene016327.t1 |
| chr8.2 | exon | 56499409 | 56499597 | 56499409 | ID=MS.gene016327.t1.exon2;Parent=MS.gene016327.t1 |
| chr8.2 | CDS | 56499409 | 56499597 | 56499409 | ID=cds.MS.gene016327.t1;Parent=MS.gene016327.t1 |
| chr8.2 | exon | 56501365 | 56501648 | 56501365 | ID=MS.gene016327.t1.exon3;Parent=MS.gene016327.t1 |
| chr8.2 | CDS | 56501365 | 56501648 | 56501365 | ID=cds.MS.gene016327.t1;Parent=MS.gene016327.t1 |
| Gene Sequence |
| Protein sequence |
