Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74355.t1 | XP_003628200.1 | 91.6 | 155 | 13 | 0 | 1 | 155 | 1 | 155 | 6.60E-80 | 306.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74355.t1 | Q9SSK5 | 36.9 | 149 | 91 | 3 | 3 | 149 | 7 | 154 | 5.9e-21 | 102.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74355.t1 | G7L7T5 | 91.6 | 155 | 13 | 0 | 1 | 155 | 1 | 155 | 4.7e-80 | 306.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051648 | MS.gene74355 | 0.803321 | 3.69E-49 | -1.69E-46 |
| MS.gene058382 | MS.gene74355 | 0.823216 | 1.56E-53 | -1.69E-46 |
| MS.gene058386 | MS.gene74355 | 0.998097 | 4.47E-256 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74355.t1 | MTR_8g045490 | 91.613 | 155 | 13 | 0 | 1 | 155 | 1 | 155 | 9.20e-104 | 293 |
| MS.gene74355.t1 | MTR_8g045520 | 83.444 | 151 | 25 | 0 | 1 | 151 | 1 | 151 | 1.73e-91 | 263 |
| MS.gene74355.t1 | MTR_8g045400 | 78.846 | 156 | 31 | 2 | 1 | 155 | 1 | 155 | 2.27e-88 | 254 |
| MS.gene74355.t1 | MTR_8g045570 | 75.658 | 152 | 37 | 0 | 1 | 152 | 1 | 152 | 2.67e-85 | 247 |
| MS.gene74355.t1 | MTR_8g045695 | 75.658 | 152 | 36 | 1 | 1 | 152 | 1 | 151 | 1.76e-83 | 242 |
| MS.gene74355.t1 | MTR_8g045555 | 75.000 | 152 | 38 | 0 | 1 | 152 | 1 | 152 | 9.21e-82 | 238 |
| MS.gene74355.t1 | MTR_8g045300 | 71.523 | 151 | 43 | 0 | 1 | 151 | 1 | 151 | 6.95e-81 | 236 |
| MS.gene74355.t1 | MTR_8g045735 | 70.395 | 152 | 44 | 1 | 1 | 152 | 1 | 151 | 3.55e-78 | 229 |
| MS.gene74355.t1 | MTR_8g045665 | 71.053 | 152 | 43 | 1 | 1 | 152 | 1 | 151 | 6.41e-77 | 226 |
| MS.gene74355.t1 | MTR_8g045640 | 69.872 | 156 | 45 | 2 | 1 | 155 | 1 | 155 | 1.94e-76 | 224 |
| MS.gene74355.t1 | MTR_8g045560 | 69.079 | 152 | 46 | 1 | 1 | 152 | 1 | 151 | 1.81e-74 | 219 |
| MS.gene74355.t1 | MTR_1g030810 | 43.137 | 153 | 84 | 2 | 1 | 151 | 1 | 152 | 1.26e-39 | 131 |
| MS.gene74355.t1 | MTR_1g030820 | 40.523 | 153 | 88 | 2 | 1 | 151 | 1 | 152 | 3.51e-39 | 130 |
| MS.gene74355.t1 | MTR_1g030840 | 37.179 | 156 | 90 | 4 | 1 | 149 | 1 | 155 | 8.49e-28 | 101 |
| MS.gene74355.t1 | MTR_8g012550 | 33.562 | 146 | 94 | 3 | 6 | 150 | 8 | 151 | 1.86e-25 | 95.5 |
| MS.gene74355.t1 | MTR_1g031640 | 37.162 | 148 | 84 | 5 | 7 | 152 | 7 | 147 | 3.76e-24 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74355.t1 | AT5G28010 | 35.570 | 149 | 93 | 3 | 3 | 149 | 15 | 162 | 2.75e-25 | 95.5 |
| MS.gene74355.t1 | AT5G28010 | 35.570 | 149 | 93 | 3 | 3 | 149 | 15 | 162 | 2.75e-25 | 95.5 |
| MS.gene74355.t1 | AT1G70890 | 36.913 | 149 | 91 | 3 | 3 | 149 | 7 | 154 | 7.18e-25 | 94.0 |
| MS.gene74355.t1 | AT1G70840 | 32.886 | 149 | 97 | 3 | 3 | 149 | 20 | 167 | 1.32e-22 | 88.6 |
| MS.gene74355.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 3 | 149 | 22 | 169 | 4.28e-22 | 87.4 |
| MS.gene74355.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 3 | 149 | 22 | 169 | 9.13e-22 | 87.0 |
| MS.gene74355.t1 | AT1G23120 | 30.872 | 149 | 98 | 3 | 1 | 149 | 1 | 144 | 1.00e-21 | 85.5 |
| MS.gene74355.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 3 | 149 | 22 | 169 | 2.62e-21 | 87.0 |
| MS.gene74355.t1 | AT5G28000 | 32.886 | 149 | 97 | 3 | 3 | 149 | 13 | 160 | 3.43e-21 | 84.7 |
| MS.gene74355.t1 | AT1G23120 | 31.469 | 143 | 93 | 3 | 7 | 149 | 57 | 194 | 4.41e-21 | 85.1 |
| MS.gene74355.t1 | AT1G70830 | 34.228 | 149 | 95 | 3 | 3 | 149 | 22 | 169 | 6.99e-21 | 87.4 |
| MS.gene74355.t1 | AT1G70830 | 32.886 | 149 | 97 | 3 | 3 | 149 | 184 | 331 | 2.47e-19 | 83.2 |
| MS.gene74355.t1 | AT1G70870 | 35.762 | 151 | 84 | 4 | 1 | 151 | 1 | 138 | 8.81e-21 | 82.8 |
| MS.gene74355.t1 | AT1G70830 | 32.886 | 149 | 97 | 3 | 3 | 149 | 137 | 284 | 9.56e-20 | 83.6 |
| MS.gene74355.t1 | AT1G70850 | 32.215 | 149 | 98 | 3 | 3 | 149 | 9 | 156 | 1.21e-19 | 82.4 |
| MS.gene74355.t1 | AT4G23670 | 34.641 | 153 | 97 | 3 | 1 | 152 | 1 | 151 | 2.78e-19 | 79.3 |
| MS.gene74355.t1 | AT1G70850 | 32.215 | 149 | 98 | 3 | 3 | 149 | 9 | 156 | 2.81e-19 | 82.8 |
| MS.gene74355.t1 | AT1G70850 | 32.374 | 139 | 91 | 3 | 13 | 149 | 175 | 312 | 8.54e-18 | 78.6 |
| MS.gene74355.t1 | AT1G70850 | 32.215 | 149 | 98 | 3 | 3 | 149 | 9 | 156 | 2.81e-19 | 82.8 |
| MS.gene74355.t1 | AT1G70850 | 32.374 | 139 | 91 | 3 | 13 | 149 | 175 | 312 | 8.54e-18 | 78.6 |
| MS.gene74355.t1 | AT1G70880 | 30.201 | 149 | 101 | 3 | 3 | 149 | 8 | 155 | 2.44e-18 | 77.0 |
| MS.gene74355.t1 | AT1G23130 | 29.054 | 148 | 103 | 2 | 3 | 149 | 10 | 156 | 5.74e-18 | 76.3 |
| MS.gene74355.t1 | AT2G01520 | 30.719 | 153 | 103 | 3 | 1 | 152 | 1 | 151 | 1.83e-16 | 72.0 |
| MS.gene74355.t1 | AT4G23680 | 30.719 | 153 | 103 | 3 | 1 | 152 | 1 | 151 | 2.39e-16 | 71.6 |
| MS.gene74355.t1 | AT1G35260 | 28.276 | 145 | 100 | 3 | 7 | 149 | 6 | 148 | 3.71e-16 | 71.2 |
| MS.gene74355.t1 | AT1G14930 | 31.677 | 161 | 93 | 5 | 1 | 153 | 1 | 152 | 5.68e-16 | 70.9 |
| MS.gene74355.t1 | AT4G14060 | 31.373 | 153 | 102 | 3 | 1 | 152 | 1 | 151 | 2.82e-15 | 68.9 |
| MS.gene74355.t1 | AT2G01530 | 30.719 | 153 | 103 | 3 | 1 | 152 | 1 | 151 | 3.56e-15 | 68.9 |
| MS.gene74355.t1 | AT1G24020 | 31.410 | 156 | 105 | 2 | 1 | 155 | 1 | 155 | 3.58e-14 | 66.2 |
| MS.gene74355.t1 | AT1G24020 | 31.410 | 156 | 105 | 2 | 1 | 155 | 1 | 155 | 3.58e-14 | 66.2 |
| MS.gene74355.t1 | AT1G35310 | 26.087 | 138 | 99 | 3 | 13 | 149 | 12 | 147 | 1.06e-13 | 64.7 |
| MS.gene74355.t1 | AT1G30990 | 30.667 | 150 | 100 | 4 | 1 | 149 | 1 | 147 | 3.32e-13 | 63.5 |
| MS.gene74355.t1 | AT1G14940 | 29.333 | 150 | 103 | 3 | 1 | 149 | 1 | 148 | 2.52e-12 | 61.2 |
| MS.gene74355.t1 | AT1G14950 | 28.289 | 152 | 106 | 3 | 1 | 151 | 1 | 150 | 1.02e-11 | 59.7 |
| MS.gene74355.t1 | AT3G26460 | 30.769 | 156 | 100 | 6 | 1 | 152 | 1 | 152 | 1.88e-11 | 58.9 |
Find 26 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCACCTTCATGAAGTT+TGG | 0.293563 | 8.4:-55739714 | None:intergenic |
| ATGGCACTGCTGCTGCTAAA+TGG | 0.310932 | 8.4:+55741557 | MS.gene74355:CDS |
| CACCCTTATCAATTACTTCA+AGG | 0.382574 | 8.4:-55741534 | None:intergenic |
| TTATTGAGCTATGTTTGCTT+TGG | 0.404556 | 8.4:-55741677 | None:intergenic |
| CATCCTTGAAGTAATTGATA+AGG | 0.438738 | 8.4:+55741531 | MS.gene74355:CDS |
| AAGTATTCCATGTAGCCATT+TGG | 0.448595 | 8.4:-55741619 | None:intergenic |
| AACACTTATAAGCTCTTTGG+TGG | 0.457999 | 8.4:+55741475 | MS.gene74355:CDS |
| AACTTCATGAAGGTGAAGAT+TGG | 0.483425 | 8.4:+55739717 | MS.gene74355:CDS |
| ATCCTTGAAGTAATTGATAA+GGG | 0.486541 | 8.4:+55741532 | MS.gene74355:CDS |
| AAACACTGGACTTATGTCAT+AGG | 0.490184 | 8.4:+55739758 | MS.gene74355:CDS |
| AGATATTGATGAGCACTATA+AGG | 0.500590 | 8.4:+55741498 | MS.gene74355:CDS |
| TATTCCATGTAGCCATTTGG+AGG | 0.517921 | 8.4:-55741616 | None:intergenic |
| AATGGCTACATGGAATACTT+TGG | 0.525683 | 8.4:+55741622 | MS.gene74355:CDS |
| TGACCCTCCAAATGGCTACA+TGG | 0.526835 | 8.4:+55741612 | MS.gene74355:CDS |
| GAGGATATTGACCCTCCAAA+TGG | 0.540200 | 8.4:+55741604 | MS.gene74355:CDS |
| GAAGTAATTGATAAGGGTGA+TGG | 0.549119 | 8.4:+55741538 | MS.gene74355:CDS |
| TATGATGAACTCTTTCACAA+AGG | 0.564152 | 8.4:-55739691 | None:intergenic |
| GGTAAGCTTAGTACTGAAGT+TGG | 0.593684 | 8.4:+55739605 | MS.gene74355:CDS |
| CATCATACCAAACTTCATGA+AGG | 0.595182 | 8.4:+55739707 | MS.gene74355:CDS |
| ACACTGATTCAGTTAAACAC+TGG | 0.620261 | 8.4:+55739744 | MS.gene74355:CDS |
| ATAATTCACAACAGATGGCA+AGG | 0.621271 | 8.4:+55741402 | MS.gene74355:intron |
| AGATTGTAGAACTTGTCAGC+GGG | 0.623742 | 8.4:-55739638 | None:intergenic |
| ATTCCATGTAGCCATTTGGA+GGG | 0.625101 | 8.4:-55741615 | None:intergenic |
| TGAATATGAAAAGATCAATG+AGG | 0.658576 | 8.4:+55741585 | MS.gene74355:CDS |
| TTCAAAGAAATGGTGCTCTG+CGG | 0.661449 | 8.4:+55739584 | None:intergenic |
| TAGATTGTAGAACTTGTCAG+CGG | 0.690373 | 8.4:-55739639 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTTTTTTTTT+AGG | - | chr8.4:55740730-55740749 | None:intergenic | 0.0% |
| !! | AACAAAAAAAAAAAAAATCA+GGG | - | chr8.4:55740176-55740195 | None:intergenic | 10.0% |
| !! | AGGAATAATAAATATTTATA+AGG | - | chr8.4:55741243-55741262 | None:intergenic | 10.0% |
| !! | TTCTATACAAAAATATTTAT+TGG | + | chr8.4:55741268-55741287 | MS.gene74355:intron | 10.0% |
| !!! | ATAGTTTATTTGTTAAAAAA+TGG | + | chr8.4:55741308-55741327 | MS.gene74355:intron | 10.0% |
| !!! | TAGTTTATTTGTTAAAAAAT+GGG | + | chr8.4:55741309-55741328 | MS.gene74355:intron | 10.0% |
| !!! | TAGTTTTAAAAGTAATATTT+TGG | - | chr8.4:55740917-55740936 | None:intergenic | 10.0% |
| !!! | TATTTTTGTATAGAAAAAAA+AGG | - | chr8.4:55741263-55741282 | None:intergenic | 10.0% |
| !!! | TTTTCTATATATATTAGATT+AGG | - | chr8.4:55740608-55740627 | None:intergenic | 10.0% |
| !! | AAAAAAAATCAACAATCATT+TGG | + | chr8.4:55740741-55740760 | MS.gene74355:intron | 15.0% |
| !! | AAAAAAATCAACAATCATTT+GGG | + | chr8.4:55740742-55740761 | MS.gene74355:intron | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr8.4:55740941-55740960 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr8.4:55740940-55740959 | MS.gene74355:intron | 15.0% |
| !! | ACAAAAAAAAAAAAAATCAG+GGG | - | chr8.4:55740175-55740194 | None:intergenic | 15.0% |
| !! | AGATATCATAATTGTTAAAA+TGG | + | chr8.4:55740367-55740386 | MS.gene74355:intron | 15.0% |
| !! | CTAATATATATAGAAAAGTT+GGG | + | chr8.4:55740611-55740630 | MS.gene74355:intron | 15.0% |
| !! | GAACAAAAAAAAAAAAAATC+AGG | - | chr8.4:55740177-55740196 | None:intergenic | 15.0% |
| !! | TAAAAATATAACAGAAATAG+AGG | + | chr8.4:55740473-55740492 | MS.gene74355:intron | 15.0% |
| !! | TAATATATATAGAAAAGTTG+GGG | + | chr8.4:55740612-55740631 | MS.gene74355:intron | 15.0% |
| !! | TCTAATATATATAGAAAAGT+TGG | + | chr8.4:55740610-55740629 | MS.gene74355:intron | 15.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr8.4:55740931-55740950 | MS.gene74355:intron | 20.0% |
| !! | AATATATATAGAAAAGTTGG+GGG | + | chr8.4:55740613-55740632 | MS.gene74355:intron | 20.0% |
| !! | AATCAAATAAGATGATGATT+TGG | - | chr8.4:55739820-55739839 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr8.4:55740854-55740873 | None:intergenic | 20.0% |
| !! | AGATTATAAGATCTCAAAAA+AGG | + | chr8.4:55741101-55741120 | MS.gene74355:intron | 20.0% |
| !! | ATATATAGTTCATACAATTC+TGG | - | chr8.4:55740332-55740351 | None:intergenic | 20.0% |
| ! | AAAAACACTTATAAGCTCTT+TGG | + | chr8.4:55741472-55741491 | MS.gene74355:CDS | 25.0% |
| ! | AATATAACAGAAATAGAGGA+TGG | + | chr8.4:55740477-55740496 | MS.gene74355:intron | 25.0% |
| ! | ATAAGAAAGAAACAAGTACA+TGG | + | chr8.4:55739954-55739973 | MS.gene74355:intron | 25.0% |
| ! | ATATATATAGAAAAGTTGGG+GGG | + | chr8.4:55740614-55740633 | MS.gene74355:intron | 25.0% |
| ! | ATCCTTGAAGTAATTGATAA+GGG | + | chr8.4:55741532-55741551 | MS.gene74355:CDS | 25.0% |
| ! | CTATATATTAAACTGTGTGA+AGG | + | chr8.4:55740344-55740363 | MS.gene74355:intron | 25.0% |
| ! | TCATAATTGTTAAAATGGTC+CGG | + | chr8.4:55740372-55740391 | MS.gene74355:intron | 25.0% |
| ! | TGAATATGAAAAGATCAATG+AGG | + | chr8.4:55741585-55741604 | MS.gene74355:CDS | 25.0% |
| !! | TTAAAATGGAACTTTAAGAG+AGG | - | chr8.4:55740773-55740792 | None:intergenic | 25.0% |
| !!! | ATGATTGTTGATTTGTCATT+AGG | - | chr8.4:55740700-55740719 | None:intergenic | 25.0% |
| !!! | GTTCTTTGTTTTTCTTACTT+AGG | - | chr8.4:55740545-55740564 | None:intergenic | 25.0% |
| AACCACAGCTATTCTTTATA+TGG | - | chr8.4:55741218-55741237 | None:intergenic | 30.0% | |
| AACCATATAAAGAATAGCTG+TGG | + | chr8.4:55741213-55741232 | MS.gene74355:intron | 30.0% | |
| AGATATTGATGAGCACTATA+AGG | + | chr8.4:55741498-55741517 | MS.gene74355:CDS | 30.0% | |
| ATTTGTCATTAGGTTCTATG+GGG | - | chr8.4:55740690-55740709 | None:intergenic | 30.0% | |
| CATCCTTGAAGTAATTGATA+AGG | + | chr8.4:55741531-55741550 | MS.gene74355:CDS | 30.0% | |
| CGGGAAATATAATCATTCAT+AGG | + | chr8.4:55740264-55740283 | MS.gene74355:intron | 30.0% | |
| GATTTGTCATTAGGTTCTAT+GGG | - | chr8.4:55740691-55740710 | None:intergenic | 30.0% | |
| GTTTATTTCGCTTGATTACA+GGG | + | chr8.4:55740397-55740416 | MS.gene74355:intron | 30.0% | |
| TATGATGAACTCTTTCACAA+AGG | - | chr8.4:55739694-55739713 | None:intergenic | 30.0% | |
| TCTAGAAGTCCTAATTCAAA+TGG | - | chr8.4:55740085-55740104 | None:intergenic | 30.0% | |
| TTAAGCATCTATCGTCAAAA+TGG | - | chr8.4:55740207-55740226 | None:intergenic | 30.0% | |
| TTATTGAGCTATGTTTGCTT+TGG | - | chr8.4:55741680-55741699 | None:intergenic | 30.0% | |
| ! | CGGATCTTGGAATAATTTTT+GGG | + | chr8.4:55740301-55740320 | MS.gene74355:intron | 30.0% |
| ! | CTATCGTCAAAATGGTTTTT+GGG | - | chr8.4:55740199-55740218 | None:intergenic | 30.0% |
| ! | GGATCTTGGAATAATTTTTG+GGG | + | chr8.4:55740302-55740321 | MS.gene74355:intron | 30.0% |
| ! | TCTATCGTCAAAATGGTTTT+TGG | - | chr8.4:55740200-55740219 | None:intergenic | 30.0% |
| ! | TGATTTGTCATTAGGTTCTA+TGG | - | chr8.4:55740692-55740711 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr8.4:55741023-55741042 | MS.gene74355:intron | 30.0% |
| !! | AAGCGACACTCATTTTAAAA+TGG | - | chr8.4:55740787-55740806 | None:intergenic | 30.0% |
| !! | ATCTTGGAATAATTTTTGGG+GGG | + | chr8.4:55740304-55740323 | MS.gene74355:intron | 30.0% |
| !! | GATCTTGGAATAATTTTTGG+GGG | + | chr8.4:55740303-55740322 | MS.gene74355:intron | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr8.4:55741022-55741041 | None:intergenic | 30.0% |
| AAACACTGGACTTATGTCAT+AGG | + | chr8.4:55739758-55739777 | MS.gene74355:CDS | 35.0% | |
| AACACTTATAAGCTCTTTGG+TGG | + | chr8.4:55741475-55741494 | MS.gene74355:CDS | 35.0% | |
| AACAGAAATAGAGGATGGAA+GGG | + | chr8.4:55740482-55740501 | MS.gene74355:intron | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | chr8.4:55739717-55739736 | MS.gene74355:CDS | 35.0% | |
| AAGTATTCCATGTAGCCATT+TGG | - | chr8.4:55741622-55741641 | None:intergenic | 35.0% | |
| AATCAAGCGAAATAAACCAC+CGG | - | chr8.4:55740394-55740413 | None:intergenic | 35.0% | |
| AATGGCTACATGGAATACTT+TGG | + | chr8.4:55741622-55741641 | MS.gene74355:CDS | 35.0% | |
| ATAATTCACAACAGATGGCA+AGG | + | chr8.4:55741402-55741421 | MS.gene74355:intron | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | - | chr8.4:55739717-55739736 | None:intergenic | 35.0% | |
| ATTAGGTTCTATGGGGAATA+TGG | - | chr8.4:55740683-55740702 | None:intergenic | 35.0% | |
| CAACATAGTCAAAAGGAGAA+GGG | - | chr8.4:55740242-55740261 | None:intergenic | 35.0% | |
| CACCCTTATCAATTACTTCA+AGG | - | chr8.4:55741537-55741556 | None:intergenic | 35.0% | |
| CATCATACCAAACTTCATGA+AGG | + | chr8.4:55739707-55739726 | MS.gene74355:CDS | 35.0% | |
| CCATCATAATTCACAACAGA+TGG | + | chr8.4:55741397-55741416 | MS.gene74355:intron | 35.0% | |
| CCATCTGTTGTGAATTATGA+TGG | - | chr8.4:55741400-55741419 | None:intergenic | 35.0% | |
| GAAGTAATTGATAAGGGTGA+TGG | + | chr8.4:55741538-55741557 | MS.gene74355:CDS | 35.0% | |
| GGTTTATTTCGCTTGATTAC+AGG | + | chr8.4:55740396-55740415 | MS.gene74355:intron | 35.0% | |
| TAACAGAAATAGAGGATGGA+AGG | + | chr8.4:55740481-55740500 | MS.gene74355:intron | 35.0% | |
| TAATTGTTAAAATGGTCCGG+TGG | + | chr8.4:55740375-55740394 | MS.gene74355:intron | 35.0% | |
| TACATTCGACAAACCAAACA+TGG | + | chr8.4:55740146-55740165 | MS.gene74355:intron | 35.0% | |
| TAGATTGTAGAACTTGTCAG+CGG | - | chr8.4:55739642-55739661 | None:intergenic | 35.0% | |
| TCAACATAGTCAAAAGGAGA+AGG | - | chr8.4:55740243-55740262 | None:intergenic | 35.0% | |
| TGTTGTGAATTATGATGGCA+CGG | - | chr8.4:55741395-55741414 | None:intergenic | 35.0% | |
| ! | GCGGATCTTGGAATAATTTT+TGG | + | chr8.4:55740300-55740319 | MS.gene74355:intron | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr8.4:55740892-55740911 | None:intergenic | 35.0% |
| ! | TCTTTTTCTTACTTAGGTCG+CGG | - | chr8.4:55740514-55740533 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr8.4:55740888-55740907 | None:intergenic | 35.0% |
| ! | TGTTTTTCTTACTTAGGTCG+CGG | - | chr8.4:55740539-55740558 | None:intergenic | 35.0% |
| !! | ACACTGATTCAGTTAAACAC+TGG | + | chr8.4:55739744-55739763 | MS.gene74355:CDS | 35.0% |
| !! | CTCCTTTTGACTATGTTGAA+CGG | + | chr8.4:55740244-55740263 | MS.gene74355:intron | 35.0% |
| !! | TCCTTTTGACTATGTTGAAC+GGG | + | chr8.4:55740245-55740264 | MS.gene74355:intron | 35.0% |
| !! | TGATGATTTGGTTATCGATC+AGG | - | chr8.4:55739808-55739827 | None:intergenic | 35.0% |
| AAATCAGGGGTAACCATGTT+TGG | - | chr8.4:55740162-55740181 | None:intergenic | 40.0% | |
| AGATTGTAGAACTTGTCAGC+GGG | - | chr8.4:55739641-55739660 | None:intergenic | 40.0% | |
| AGGACTTCTAGACAATGACA+TGG | + | chr8.4:55740093-55740112 | MS.gene74355:intron | 40.0% | |
| ATTCATAGGCTTCCATACAG+TGG | + | chr8.4:55740278-55740297 | MS.gene74355:intron | 40.0% | |
| ATTCCATGTAGCCATTTGGA+GGG | - | chr8.4:55741618-55741637 | None:intergenic | 40.0% | |
| GTTGTGAATTATGATGGCAC+GGG | - | chr8.4:55741394-55741413 | None:intergenic | 40.0% | |
| TATTCCATGTAGCCATTTGG+AGG | - | chr8.4:55741619-55741638 | None:intergenic | 40.0% | |
| TCAAATGGCAAATGCCGAAA+TGG | - | chr8.4:55740070-55740089 | None:intergenic | 40.0% | |
| TCCCGTTCAACATAGTCAAA+AGG | - | chr8.4:55740249-55740268 | None:intergenic | 40.0% | |
| TTGATTACAGGGTAAGGATG+CGG | + | chr8.4:55740408-55740427 | MS.gene74355:intron | 40.0% | |
| TTTCGCTTGATTACAGGGTA+AGG | + | chr8.4:55740402-55740421 | MS.gene74355:intron | 40.0% | |
| ! | CGGCATTTGCCATTTGAATT+AGG | + | chr8.4:55740073-55740092 | MS.gene74355:intron | 40.0% |
| ! | CTTTTTCTTACTTAGGTCGC+GGG | - | chr8.4:55740513-55740532 | None:intergenic | 40.0% |
| ! | GCGGGTTCTTTTTCTTACTT+AGG | - | chr8.4:55740520-55740539 | None:intergenic | 40.0% |
| ! | GGTAAGCTTAGTACTGAAGT+TGG | + | chr8.4:55739605-55739624 | MS.gene74355:CDS | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr8.4:55740889-55740908 | None:intergenic | 40.0% |
| ! | GTTTTTCTTACTTAGGTCGC+GGG | - | chr8.4:55740538-55740557 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr8.4:55741027-55741046 | MS.gene74355:intron | 40.0% |
| CATAGTCAAAAGGAGAAGGG+TGG | - | chr8.4:55740239-55740258 | None:intergenic | 45.0% | |
| CTATGGGGAATATGGAAGCA+GGG | - | chr8.4:55740675-55740694 | None:intergenic | 45.0% | |
| GAGGATATTGACCCTCCAAA+TGG | + | chr8.4:55741604-55741623 | MS.gene74355:CDS | 45.0% | |
| TAAACTCACACACAGCTGTG+AGG | + | chr8.4:55740006-55740025 | MS.gene74355:intron | 45.0% | |
| TATGGGGAATATGGAAGCAG+GGG | - | chr8.4:55740674-55740693 | None:intergenic | 45.0% | |
| TCTATGGGGAATATGGAAGC+AGG | - | chr8.4:55740676-55740695 | None:intergenic | 45.0% | |
| TCTTACCACAGCTACTCAGT+TGG | - | chr8.4:55740580-55740599 | None:intergenic | 45.0% | |
| TGATTACAGGGTAAGGATGC+GGG | + | chr8.4:55740409-55740428 | MS.gene74355:intron | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr8.4:55741026-55741045 | MS.gene74355:intron | 45.0% |
| AATGCCGAAATGGCAAAGGC+CGG | - | chr8.4:55740060-55740079 | None:intergenic | 50.0% | |
| ATGGCACTGCTGCTGCTAAA+TGG | + | chr8.4:55741557-55741576 | MS.gene74355:CDS | 50.0% | |
| CATAGGCTTCCATACAGTGG+CGG | + | chr8.4:55740281-55740300 | MS.gene74355:intron | 50.0% | |
| GGCAAATGCCGAAATGGCAA+AGG | - | chr8.4:55740064-55740083 | None:intergenic | 50.0% | |
| TGACCCTCCAAATGGCTACA+TGG | + | chr8.4:55741612-55741631 | MS.gene74355:CDS | 50.0% | |
| TTCCAAGATCCGCCACTGTA+TGG | - | chr8.4:55740293-55740312 | None:intergenic | 50.0% | |
| !! | AGAAAAGTTGGGGGGTACCA+TGG | + | chr8.4:55740622-55740641 | MS.gene74355:intron | 50.0% |
| !! | TTCCATACAGTGGCGGATCT+TGG | + | chr8.4:55740288-55740307 | MS.gene74355:intron | 50.0% |
| AAGCAGGGGCGGATCTTCTT+AGG | - | chr8.4:55740660-55740679 | None:intergenic | 55.0% | |
| ACACACAGCTGTGAGGTCTC+GGG | + | chr8.4:55740013-55740032 | MS.gene74355:intron | 55.0% | |
| AGCAGGGGCGGATCTTCTTA+GGG | - | chr8.4:55740659-55740678 | None:intergenic | 55.0% | |
| CACACACAGCTGTGAGGTCT+CGG | + | chr8.4:55740012-55740031 | MS.gene74355:intron | 55.0% | |
| GGATCTTCTTAGGGACCTGC+AGG | - | chr8.4:55740650-55740669 | None:intergenic | 55.0% | |
| ! | ACGTCCGGCCTTTGCCATTT+CGG | + | chr8.4:55740053-55740072 | MS.gene74355:intron | 55.0% |
| AAAGGCCGGACGTCGTGACT+CGG | - | chr8.4:55740046-55740065 | None:intergenic | 60.0% | |
| CAAACCCGAGTCACGACGTC+CGG | + | chr8.4:55740038-55740057 | MS.gene74355:intron | 60.0% | |
| CAGCTACTCAGTTGGCGCAG+TGG | - | chr8.4:55740572-55740591 | None:intergenic | 60.0% | |
| CTGCGCCAACTGAGTAGCTG+TGG | + | chr8.4:55740572-55740591 | MS.gene74355:intron | 60.0% | |
| GCGGGTTCGAATCTCTACGC+AGG | + | chr8.4:55740427-55740446 | MS.gene74355:intron | 60.0% | |
| GGGGAATATGGAAGCAGGGG+CGG | - | chr8.4:55740671-55740690 | None:intergenic | 60.0% | |
| TTAGGGACCTGCAGGTGCCA+TGG | - | chr8.4:55740642-55740661 | None:intergenic | 60.0% | |
| AAGGCCGGACGTCGTGACTC+GGG | - | chr8.4:55740045-55740064 | None:intergenic | 65.0% | |
| !! | GGGGGTACCATGGCACCTGC+AGG | + | chr8.4:55740632-55740651 | MS.gene74355:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 55739593 | 55741699 | 55739593 | ID=MS.gene74355 |
| chr8.4 | mRNA | 55739593 | 55741699 | 55739593 | ID=MS.gene74355.t1;Parent=MS.gene74355 |
| chr8.4 | exon | 55739593 | 55739779 | 55739593 | ID=MS.gene74355.t1.exon1;Parent=MS.gene74355.t1 |
| chr8.4 | CDS | 55739593 | 55739779 | 55739593 | ID=cds.MS.gene74355.t1;Parent=MS.gene74355.t1 |
| chr8.4 | exon | 55741416 | 55741699 | 55741416 | ID=MS.gene74355.t1.exon2;Parent=MS.gene74355.t1 |
| chr8.4 | CDS | 55741416 | 55741699 | 55741416 | ID=cds.MS.gene74355.t1;Parent=MS.gene74355.t1 |
| Gene Sequence |
| Protein sequence |
