Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77758.t1 | XP_013445246.1 | 93.6 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 3.00E-80 | 307.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77758.t1 | Q941R6 | 35.3 | 153 | 95 | 4 | 3 | 152 | 20 | 171 | 7.7e-21 | 101.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77758.t1 | I3SJ62 | 93.6 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 2.1e-80 | 307.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77758.t1 | MTR_8g045695 | 93.590 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 2.51e-106 | 300 |
| MS.gene77758.t1 | MTR_8g045735 | 85.065 | 154 | 23 | 0 | 1 | 154 | 1 | 154 | 5.55e-98 | 279 |
| MS.gene77758.t1 | MTR_8g045665 | 83.974 | 156 | 25 | 0 | 1 | 156 | 1 | 156 | 7.07e-96 | 274 |
| MS.gene77758.t1 | MTR_8g045640 | 82.051 | 156 | 28 | 0 | 1 | 156 | 1 | 156 | 1.76e-92 | 265 |
| MS.gene77758.t1 | MTR_8g045560 | 80.769 | 156 | 30 | 0 | 1 | 156 | 1 | 156 | 3.26e-91 | 262 |
| MS.gene77758.t1 | MTR_8g045520 | 76.433 | 157 | 36 | 1 | 1 | 156 | 1 | 157 | 2.48e-85 | 247 |
| MS.gene77758.t1 | MTR_8g045400 | 75.159 | 157 | 37 | 2 | 1 | 156 | 1 | 156 | 5.58e-85 | 246 |
| MS.gene77758.t1 | MTR_8g045490 | 72.611 | 157 | 41 | 2 | 1 | 156 | 1 | 156 | 2.06e-81 | 237 |
| MS.gene77758.t1 | MTR_8g045555 | 70.395 | 152 | 44 | 1 | 1 | 151 | 1 | 152 | 7.79e-77 | 225 |
| MS.gene77758.t1 | MTR_8g045570 | 69.079 | 152 | 46 | 1 | 1 | 151 | 1 | 152 | 5.92e-76 | 223 |
| MS.gene77758.t1 | MTR_8g045300 | 66.667 | 156 | 51 | 1 | 1 | 155 | 1 | 156 | 7.88e-76 | 223 |
| MS.gene77758.t1 | MTR_1g030810 | 45.098 | 153 | 80 | 3 | 1 | 150 | 1 | 152 | 2.41e-40 | 133 |
| MS.gene77758.t1 | MTR_1g030820 | 39.869 | 153 | 88 | 3 | 1 | 150 | 1 | 152 | 1.54e-37 | 126 |
| MS.gene77758.t1 | MTR_1g030840 | 40.385 | 156 | 84 | 5 | 1 | 148 | 1 | 155 | 1.04e-30 | 108 |
| MS.gene77758.t1 | MTR_8g012550 | 32.667 | 150 | 97 | 4 | 6 | 153 | 8 | 155 | 4.61e-25 | 94.4 |
| MS.gene77758.t1 | MTR_1g031640 | 38.514 | 148 | 81 | 6 | 7 | 151 | 7 | 147 | 5.45e-23 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77758.t1 | AT1G70840 | 35.294 | 153 | 95 | 4 | 3 | 152 | 20 | 171 | 1.90e-25 | 95.9 |
| MS.gene77758.t1 | AT5G28010 | 35.294 | 153 | 95 | 4 | 3 | 152 | 15 | 166 | 2.08e-25 | 95.5 |
| MS.gene77758.t1 | AT5G28010 | 35.294 | 153 | 95 | 4 | 3 | 152 | 15 | 166 | 2.08e-25 | 95.5 |
| MS.gene77758.t1 | AT1G70830 | 36.601 | 153 | 93 | 4 | 3 | 152 | 22 | 173 | 3.85e-25 | 95.1 |
| MS.gene77758.t1 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 5.88e-25 | 95.5 |
| MS.gene77758.t1 | AT1G70890 | 35.948 | 153 | 94 | 4 | 3 | 152 | 7 | 158 | 1.33e-24 | 93.2 |
| MS.gene77758.t1 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 4.26e-24 | 94.4 |
| MS.gene77758.t1 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 7.52e-24 | 95.1 |
| MS.gene77758.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 184 | 335 | 2.42e-22 | 91.3 |
| MS.gene77758.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 137 | 288 | 7.36e-23 | 91.7 |
| MS.gene77758.t1 | AT5G28000 | 32.026 | 153 | 100 | 4 | 3 | 152 | 13 | 164 | 5.78e-22 | 86.7 |
| MS.gene77758.t1 | AT4G23670 | 34.641 | 153 | 96 | 4 | 1 | 151 | 1 | 151 | 8.91e-22 | 85.9 |
| MS.gene77758.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 2.31e-21 | 87.0 |
| MS.gene77758.t1 | AT1G14930 | 31.210 | 157 | 104 | 4 | 1 | 155 | 1 | 155 | 3.46e-21 | 84.3 |
| MS.gene77758.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 5.54e-21 | 87.4 |
| MS.gene77758.t1 | AT1G70850 | 35.664 | 143 | 88 | 4 | 13 | 152 | 175 | 316 | 9.08e-21 | 86.7 |
| MS.gene77758.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 5.54e-21 | 87.4 |
| MS.gene77758.t1 | AT1G70850 | 35.664 | 143 | 88 | 4 | 13 | 152 | 175 | 316 | 9.08e-21 | 86.7 |
| MS.gene77758.t1 | AT2G01520 | 31.373 | 153 | 101 | 4 | 1 | 151 | 1 | 151 | 1.36e-20 | 82.8 |
| MS.gene77758.t1 | AT2G01530 | 32.680 | 153 | 99 | 4 | 1 | 151 | 1 | 151 | 1.35e-19 | 80.1 |
| MS.gene77758.t1 | AT1G14940 | 29.299 | 157 | 107 | 4 | 1 | 155 | 1 | 155 | 1.39e-18 | 77.8 |
| MS.gene77758.t1 | AT1G70870 | 35.484 | 155 | 78 | 5 | 1 | 150 | 1 | 138 | 2.64e-18 | 76.6 |
| MS.gene77758.t1 | AT1G14950 | 29.936 | 157 | 106 | 4 | 1 | 155 | 1 | 155 | 9.03e-18 | 75.5 |
| MS.gene77758.t1 | AT4G14060 | 30.065 | 153 | 103 | 4 | 1 | 151 | 1 | 151 | 1.03e-17 | 75.5 |
| MS.gene77758.t1 | AT1G23130 | 28.188 | 149 | 104 | 3 | 3 | 149 | 10 | 157 | 1.98e-17 | 74.7 |
| MS.gene77758.t1 | AT4G23680 | 30.263 | 152 | 102 | 4 | 1 | 150 | 1 | 150 | 5.11e-17 | 73.6 |
| MS.gene77758.t1 | AT1G70880 | 28.758 | 153 | 105 | 4 | 3 | 152 | 8 | 159 | 8.31e-17 | 73.2 |
| MS.gene77758.t1 | AT1G35260 | 29.861 | 144 | 96 | 4 | 9 | 149 | 8 | 149 | 1.10e-16 | 72.8 |
| MS.gene77758.t1 | AT1G30990 | 29.801 | 151 | 101 | 5 | 1 | 149 | 1 | 148 | 8.49e-16 | 70.5 |
| MS.gene77758.t1 | AT1G23120 | 27.333 | 150 | 101 | 5 | 3 | 149 | 1 | 145 | 1.52e-15 | 69.7 |
| MS.gene77758.t1 | AT1G23120 | 26.241 | 141 | 98 | 4 | 10 | 149 | 60 | 195 | 3.80e-15 | 69.7 |
| MS.gene77758.t1 | AT1G14960 | 28.387 | 155 | 107 | 4 | 1 | 153 | 1 | 153 | 7.32e-15 | 68.2 |
| MS.gene77758.t1 | AT1G24020 | 30.968 | 155 | 98 | 4 | 1 | 150 | 1 | 151 | 5.07e-14 | 65.9 |
| MS.gene77758.t1 | AT1G24020 | 30.968 | 155 | 98 | 4 | 1 | 150 | 1 | 151 | 5.07e-14 | 65.9 |
| MS.gene77758.t1 | AT3G26460 | 26.797 | 153 | 109 | 3 | 1 | 151 | 1 | 152 | 1.31e-13 | 64.7 |
| MS.gene77758.t1 | AT1G35310 | 28.058 | 139 | 96 | 4 | 13 | 149 | 12 | 148 | 2.09e-13 | 63.9 |
| MS.gene77758.t1 | AT3G26450 | 25.325 | 154 | 110 | 5 | 1 | 151 | 1 | 152 | 1.10e-11 | 59.7 |
| MS.gene77758.t1 | AT1G14940 | 26.115 | 157 | 96 | 4 | 1 | 155 | 1 | 139 | 1.39e-11 | 58.9 |
Find 29 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCACATACAAGCTATT+TGG | 0.273919 | 8.1:+59750473 | MS.gene77758:CDS |
| GTCTTTAAGCTCATCTTAGA+AGG | 0.291250 | 8.1:+59750518 | MS.gene77758:CDS |
| ATCTTCACCTTCATGAAGTT+TGG | 0.299460 | 8.1:-59748939 | None:intergenic |
| AACATTAATGAAAGAGTTCA+TGG | 0.350725 | 8.1:+59748914 | MS.gene77758:CDS |
| ATGGAAGTTCTGCTGTTAGA+TGG | 0.407851 | 8.1:+59750555 | MS.gene77758:CDS |
| GGTAAACTTATTACTGAACT+TGG | 0.415223 | 8.1:+59748830 | MS.gene77758:CDS |
| TGGAGATATTGAAAACTATA+AGG | 0.439418 | 8.1:+59750496 | MS.gene77758:CDS |
| AGGAAATCCATCCATCCATT+TGG | 0.440781 | 8.1:-59750617 | None:intergenic |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8.1:+59748983 | MS.gene77758:CDS |
| AAAAGCACTAGAGATATTGA+TGG | 0.477335 | 8.1:+59750644 | MS.gene77758:CDS |
| AACTTCATGAAGGTGAAGAT+TGG | 0.494334 | 8.1:+59748942 | MS.gene77758:CDS |
| TCATCTTGTCAAAGGGGAAA+AGG | 0.504175 | 8.1:+59750667 | MS.gene77758:CDS |
| AGATTGGCATCATACTGATT+CGG | 0.504369 | 8.1:+59748958 | MS.gene77758:CDS |
| TTGATGGTCATCTTGTCAAA+GGG | 0.506740 | 8.1:+59750660 | MS.gene77758:CDS |
| GAGGATATCGATACTCCAAA+TGG | 0.515854 | 8.1:+59750602 | MS.gene77758:CDS |
| ATCACATACAAGCTATTTGG+TGG | 0.530005 | 8.1:+59750476 | MS.gene77758:CDS |
| CGATACTCCAAATGGATGGA+TGG | 0.534738 | 8.1:+59750610 | MS.gene77758:CDS |
| GTAAACTTATTACTGAACTT+GGG | 0.542207 | 8.1:+59748831 | MS.gene77758:CDS |
| ATTGATGGTCATCTTGTCAA+AGG | 0.543582 | 8.1:+59750659 | MS.gene77758:CDS |
| TCTTTAAGCTCATCTTAGAA+GGG | 0.545692 | 8.1:+59750519 | MS.gene77758:CDS |
| AGTTTGTAGAACTTGTCAGC+TGG | 0.569465 | 8.1:-59748863 | None:intergenic |
| GAAGGGCTTAACAAGGCTGA+TGG | 0.584478 | 8.1:+59750536 | MS.gene77758:CDS |
| ATATCGATACTCCAAATGGA+TGG | 0.593139 | 8.1:+59750606 | MS.gene77758:CDS |
| ATACTGATTCGGTTAAACAC+TGG | 0.606046 | 8.1:+59748969 | MS.gene77758:CDS |
| CATCTTAGAAGGGCTTAACA+AGG | 0.611102 | 8.1:+59750529 | MS.gene77758:CDS |
| CATGGTGCCAAACTTCATGA+AGG | 0.632424 | 8.1:+59748932 | MS.gene77758:CDS |
| TGATGGTCATCTTGTCAAAG+GGG | 0.652198 | 8.1:+59750661 | MS.gene77758:CDS |
| TGACGTAATAACAGATGGCG+AGG | 0.668621 | 8.1:+59750403 | MS.gene77758:intron |
| TGATTATGAGAAGAACAATG+AGG | 0.681814 | 8.1:+59750583 | MS.gene77758:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATTATTCGAAAAAA+AGG | + | chr8.1:59749423-59749442 | MS.gene77758:intron | 10.0% |
| !! | CTTAATTATCAAAAAAATAA+TGG | - | chr8.1:59749379-59749398 | None:intergenic | 10.0% |
| !!! | ATTTTTAAAAAAATGTGAAA+GGG | + | chr8.1:59750030-59750049 | MS.gene77758:intron | 10.0% |
| !!! | TATCTTATTATAATATTTTC+TGG | + | chr8.1:59750311-59750330 | MS.gene77758:intron | 10.0% |
| !! | AAATTCTAAATTATGTCAAT+AGG | - | chr8.1:59749211-59749230 | None:intergenic | 15.0% |
| !! | AAATTTACTATGAAATAGTA+GGG | + | chr8.1:59749705-59749724 | MS.gene77758:intron | 15.0% |
| !! | GAATAATATATATTATGAGT+GGG | - | chr8.1:59749416-59749435 | None:intergenic | 15.0% |
| !! | TAAATTTACTATGAAATAGT+AGG | + | chr8.1:59749704-59749723 | MS.gene77758:intron | 15.0% |
| !! | TATAGTAATAAAAAGAAGAT+TGG | + | chr8.1:59749097-59749116 | MS.gene77758:intron | 15.0% |
| !!! | ATCTTTAAATAGTATTTTAG+AGG | + | chr8.1:59750122-59750141 | MS.gene77758:intron | 15.0% |
| !!! | CATTTTTAAAAAAATGTGAA+AGG | + | chr8.1:59750029-59750048 | MS.gene77758:intron | 15.0% |
| !!! | GGATTTATATTTTGTTTTTT+AGG | + | chr8.1:59749945-59749964 | MS.gene77758:intron | 15.0% |
| !!! | GTTTTCTATTACAAATTTTT+TGG | + | chr8.1:59749066-59749085 | MS.gene77758:intron | 15.0% |
| !! | CGAATAATATATATTATGAG+TGG | - | chr8.1:59749417-59749436 | None:intergenic | 20.0% |
| !!! | CAATAAAATACGTTTTTCAA+AGG | - | chr8.1:59750363-59750382 | None:intergenic | 20.0% |
| !!! | CCTTAAAGTTTTTAGTAAAA+CGG | + | chr8.1:59749636-59749655 | MS.gene77758:intron | 20.0% |
| !!! | GTATAATTTTTTCTTTACGA+TGG | + | chr8.1:59749530-59749549 | MS.gene77758:intron | 20.0% |
| !!! | TATGTATTTGATTTATGCTT+AGG | + | chr8.1:59749735-59749754 | MS.gene77758:intron | 20.0% |
| !!! | TTTTGTTTTTTAGGATACAA+AGG | + | chr8.1:59749954-59749973 | MS.gene77758:intron | 20.0% |
| ! | AAAATCACATACAAGCTATT+TGG | + | chr8.1:59750473-59750492 | MS.gene77758:CDS | 25.0% |
| ! | AACAATGCATAATATATGCA+AGG | + | chr8.1:59750186-59750205 | MS.gene77758:intron | 25.0% |
| ! | AACATTAATGAAAGAGTTCA+TGG | + | chr8.1:59748914-59748933 | MS.gene77758:CDS | 25.0% |
| ! | AGTATCATTTGTTTCCTTTA+AGG | - | chr8.1:59749481-59749500 | None:intergenic | 25.0% |
| ! | GTAAACTTATTACTGAACTT+GGG | + | chr8.1:59748831-59748850 | MS.gene77758:CDS | 25.0% |
| ! | GTTTGTATAATATGATCCTT+CGG | + | chr8.1:59749595-59749614 | MS.gene77758:intron | 25.0% |
| ! | TGGAGATATTGAAAACTATA+AGG | + | chr8.1:59750496-59750515 | MS.gene77758:CDS | 25.0% |
| ! | TTATCTCTAGACAAAAAATC+TGG | - | chr8.1:59749567-59749586 | None:intergenic | 25.0% |
| ! | TTGTCTAGAGATAAAAAGTA+GGG | + | chr8.1:59749573-59749592 | MS.gene77758:intron | 25.0% |
| ! | TTTGTCTAGAGATAAAAAGT+AGG | + | chr8.1:59749572-59749591 | MS.gene77758:intron | 25.0% |
| !! | CCGTTTTACTAAAAACTTTA+AGG | - | chr8.1:59749639-59749658 | None:intergenic | 25.0% |
| !! | TCATTTTACAACAGTAATGT+GGG | + | chr8.1:59749924-59749943 | MS.gene77758:intron | 25.0% |
| !!! | GTGCTTTATTTAAAGATCTA+AGG | - | chr8.1:59750067-59750086 | None:intergenic | 25.0% |
| AAAGCAACAAATGACCTTAA+AGG | + | chr8.1:59749464-59749483 | MS.gene77758:intron | 30.0% | |
| AAATGATACTCAACCATCTT+TGG | + | chr8.1:59749491-59749510 | MS.gene77758:intron | 30.0% | |
| AGCCATGAAATTACAAATCA+TGG | - | chr8.1:59749811-59749830 | None:intergenic | 30.0% | |
| GGTAAACTTATTACTGAACT+TGG | + | chr8.1:59748830-59748849 | MS.gene77758:CDS | 30.0% | |
| TAATTTCATGGCTCTTTCTT+GGG | + | chr8.1:59749818-59749837 | MS.gene77758:intron | 30.0% | |
| TCTTCGTTATAGATCTCATT+TGG | - | chr8.1:59749137-59749156 | None:intergenic | 30.0% | |
| TCTTTAAGCTCATCTTAGAA+GGG | + | chr8.1:59750519-59750538 | MS.gene77758:CDS | 30.0% | |
| TGATTATGAGAAGAACAATG+AGG | + | chr8.1:59750583-59750602 | MS.gene77758:CDS | 30.0% | |
| ! | TGCCATGATTTGTAATTTCA+TGG | + | chr8.1:59749806-59749825 | MS.gene77758:intron | 30.0% |
| !! | AAAAGCACTAGAGATATTGA+TGG | + | chr8.1:59750644-59750663 | MS.gene77758:CDS | 30.0% |
| !! | GTCATTTTACAACAGTAATG+TGG | + | chr8.1:59749923-59749942 | MS.gene77758:intron | 30.0% |
| !!! | GAATGTCTCTTTCTTTTTTG+TGG | - | chr8.1:59750233-59750252 | None:intergenic | 30.0% |
| AAACACTGGACTTATGTCAT+AGG | + | chr8.1:59748983-59749002 | MS.gene77758:CDS | 35.0% | |
| AACCATCTTTGGATTCACAT+TGG | + | chr8.1:59749502-59749521 | MS.gene77758:intron | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | chr8.1:59748942-59748961 | MS.gene77758:CDS | 35.0% | |
| ATATCGATACTCCAAATGGA+TGG | + | chr8.1:59750606-59750625 | MS.gene77758:CDS | 35.0% | |
| ATCACATACAAGCTATTTGG+TGG | + | chr8.1:59750476-59750495 | MS.gene77758:CDS | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | - | chr8.1:59748942-59748961 | None:intergenic | 35.0% | |
| GTAATTTCATGGCTCTTTCT+TGG | + | chr8.1:59749817-59749836 | MS.gene77758:intron | 35.0% | |
| GTCTTTAAGCTCATCTTAGA+AGG | + | chr8.1:59750518-59750537 | MS.gene77758:CDS | 35.0% | |
| TACCAATGTGAATCCAAAGA+TGG | - | chr8.1:59749507-59749526 | None:intergenic | 35.0% | |
| TGATTTATGCTTAGGTGTTC+AGG | + | chr8.1:59749743-59749762 | MS.gene77758:intron | 35.0% | |
| ! | AGATTGGCATCATACTGATT+CGG | + | chr8.1:59748958-59748977 | MS.gene77758:CDS | 35.0% |
| ! | ATTGATGGTCATCTTGTCAA+AGG | + | chr8.1:59750659-59750678 | MS.gene77758:CDS | 35.0% |
| ! | TATCTCTAGTGCTTTTGCTA+AGG | - | chr8.1:59750640-59750659 | None:intergenic | 35.0% |
| ! | TTGATGGTCATCTTGTCAAA+GGG | + | chr8.1:59750660-59750679 | MS.gene77758:CDS | 35.0% |
| !! | ATACTGATTCGGTTAAACAC+TGG | + | chr8.1:59748969-59748988 | MS.gene77758:CDS | 35.0% |
| !!! | TGTCTCTTTCTTTTTTGTGG+TGG | - | chr8.1:59750230-59750249 | None:intergenic | 35.0% |
| AGGAAATCCATCCATCCATT+TGG | - | chr8.1:59750620-59750639 | None:intergenic | 40.0% | |
| AGTTTGTAGAACTTGTCAGC+TGG | - | chr8.1:59748866-59748885 | None:intergenic | 40.0% | |
| ATGGAAGTTCTGCTGTTAGA+TGG | + | chr8.1:59750555-59750574 | MS.gene77758:CDS | 40.0% | |
| CAAGGTTCAGATTCAAATCC+CGG | + | chr8.1:59750204-59750223 | MS.gene77758:intron | 40.0% | |
| CATCTTAGAAGGGCTTAACA+AGG | + | chr8.1:59750529-59750548 | MS.gene77758:CDS | 40.0% | |
| CGAGACTGATCTAACAATGA+AGG | + | chr8.1:59749174-59749193 | MS.gene77758:intron | 40.0% | |
| GAGGATATCGATACTCCAAA+TGG | + | chr8.1:59750602-59750621 | MS.gene77758:CDS | 40.0% | |
| TATCGAAATCATTGCACACG+AGG | + | chr8.1:59749314-59749333 | MS.gene77758:intron | 40.0% | |
| TCATCTTGTCAAAGGGGAAA+AGG | + | chr8.1:59750667-59750686 | MS.gene77758:CDS | 40.0% | |
| TGATGGTCATCTTGTCAAAG+GGG | + | chr8.1:59750661-59750680 | MS.gene77758:CDS | 40.0% | |
| ! | CGTCTTTAGACATTTTCCGA+AGG | - | chr8.1:59749614-59749633 | None:intergenic | 40.0% |
| !!! | TCTTTCTTTTTTGTGGTGGC+CGG | - | chr8.1:59750226-59750245 | None:intergenic | 40.0% |
| CGATACTCCAAATGGATGGA+TGG | + | chr8.1:59750610-59750629 | MS.gene77758:CDS | 45.0% | |
| CTTGGGTGCAATGTATGCTT+GGG | + | chr8.1:59749835-59749854 | MS.gene77758:intron | 45.0% | |
| GCCATCTGTTATTACGTCAG+AGG | - | chr8.1:59750402-59750421 | None:intergenic | 45.0% | |
| GCCTCTGACGTAATAACAGA+TGG | + | chr8.1:59750398-59750417 | MS.gene77758:intron | 45.0% | |
| TCTTGGGTGCAATGTATGCT+TGG | + | chr8.1:59749834-59749853 | MS.gene77758:intron | 45.0% | |
| TGACGTAATAACAGATGGCG+AGG | + | chr8.1:59750403-59750422 | MS.gene77758:intron | 45.0% | |
| ! | CATGGTGCCAAACTTCATGA+AGG | + | chr8.1:59748932-59748951 | MS.gene77758:CDS | 45.0% |
| !!! | CTTTCTTTTTTGTGGTGGCC+GGG | - | chr8.1:59750225-59750244 | None:intergenic | 45.0% |
| !! | TAATAAGATAATAATAATAA+AGG | - | chr8.1:59750301-59750320 | None:intergenic | 5.0% |
| !!! | CTATTATTATTTTATTTTTT+TGG | - | chr8.1:59749892-59749911 | None:intergenic | 5.0% |
| !!! | TAATTTAGAATTTTTTTAAT+TGG | + | chr8.1:59749218-59749237 | MS.gene77758:intron | 5.0% |
| !!! | TATTATATATTTTTTTAATG+CGG | + | chr8.1:59750264-59750283 | MS.gene77758:intron | 5.0% |
| CTTCGTGTGCTTAGCTCAGT+TGG | + | chr8.1:59750159-59750178 | MS.gene77758:intron | 50.0% | |
| GAAGGGCTTAACAAGGCTGA+TGG | + | chr8.1:59750536-59750555 | MS.gene77758:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 59748818 | 59750700 | 59748818 | ID=MS.gene77758 |
| chr8.1 | mRNA | 59748818 | 59750700 | 59748818 | ID=MS.gene77758.t1;Parent=MS.gene77758 |
| chr8.1 | exon | 59748818 | 59749004 | 59748818 | ID=MS.gene77758.t1.exon1;Parent=MS.gene77758.t1 |
| chr8.1 | CDS | 59748818 | 59749004 | 59748818 | ID=cds.MS.gene77758.t1;Parent=MS.gene77758.t1 |
| chr8.1 | exon | 59750417 | 59750700 | 59750417 | ID=MS.gene77758.t1.exon2;Parent=MS.gene77758.t1 |
| chr8.1 | CDS | 59750417 | 59750700 | 59750417 | ID=cds.MS.gene77758.t1;Parent=MS.gene77758.t1 |
| Gene Sequence |
| Protein sequence |
