Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77770.t1 | XP_003628200.1 | 84.7 | 157 | 23 | 1 | 1 | 157 | 1 | 156 | 1.90E-74 | 288.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77770.t1 | Q9SSK5 | 34.7 | 150 | 95 | 3 | 3 | 150 | 7 | 155 | 3.0e-20 | 99.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77770.t1 | G7L7T5 | 84.7 | 157 | 23 | 1 | 1 | 157 | 1 | 156 | 1.3e-74 | 288.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058384 | MS.gene77770 | 0.861056 | 1.34E-63 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77770.t1 | MTR_8g045490 | 84.713 | 157 | 23 | 1 | 1 | 157 | 1 | 156 | 5.90e-98 | 279 |
| MS.gene77770.t1 | MTR_8g045400 | 80.892 | 157 | 29 | 1 | 1 | 157 | 1 | 156 | 2.36e-92 | 265 |
| MS.gene77770.t1 | MTR_8g045520 | 77.070 | 157 | 36 | 0 | 1 | 157 | 1 | 157 | 1.82e-90 | 260 |
| MS.gene77770.t1 | MTR_8g045570 | 73.684 | 152 | 40 | 0 | 1 | 152 | 1 | 152 | 6.98e-84 | 243 |
| MS.gene77770.t1 | MTR_8g045695 | 71.338 | 157 | 44 | 1 | 1 | 157 | 1 | 156 | 6.70e-83 | 241 |
| MS.gene77770.t1 | MTR_8g045300 | 69.872 | 156 | 47 | 0 | 1 | 156 | 1 | 156 | 8.06e-81 | 236 |
| MS.gene77770.t1 | MTR_8g045555 | 71.711 | 152 | 43 | 0 | 1 | 152 | 1 | 152 | 7.13e-80 | 233 |
| MS.gene77770.t1 | MTR_8g045735 | 69.032 | 155 | 47 | 1 | 1 | 155 | 1 | 154 | 1.12e-79 | 233 |
| MS.gene77770.t1 | MTR_8g045665 | 68.153 | 157 | 49 | 1 | 1 | 157 | 1 | 156 | 6.75e-78 | 228 |
| MS.gene77770.t1 | MTR_8g045640 | 68.790 | 157 | 48 | 1 | 1 | 157 | 1 | 156 | 1.79e-77 | 227 |
| MS.gene77770.t1 | MTR_8g045560 | 66.879 | 157 | 51 | 1 | 1 | 157 | 1 | 156 | 2.32e-75 | 222 |
| MS.gene77770.t1 | MTR_1g030810 | 44.444 | 153 | 82 | 2 | 1 | 151 | 1 | 152 | 1.11e-39 | 131 |
| MS.gene77770.t1 | MTR_1g030820 | 40.523 | 153 | 88 | 2 | 1 | 151 | 1 | 152 | 7.81e-39 | 129 |
| MS.gene77770.t1 | MTR_1g030840 | 39.103 | 156 | 87 | 4 | 1 | 149 | 1 | 155 | 4.08e-29 | 105 |
| MS.gene77770.t1 | MTR_1g031640 | 37.162 | 148 | 84 | 5 | 7 | 152 | 7 | 147 | 6.60e-25 | 94.0 |
| MS.gene77770.t1 | MTR_8g012550 | 33.103 | 145 | 94 | 3 | 6 | 149 | 8 | 150 | 6.95e-25 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77770.t1 | AT5G28010 | 33.333 | 150 | 97 | 3 | 3 | 150 | 15 | 163 | 7.57e-25 | 94.4 |
| MS.gene77770.t1 | AT5G28010 | 33.333 | 150 | 97 | 3 | 3 | 150 | 15 | 163 | 7.57e-25 | 94.4 |
| MS.gene77770.t1 | AT1G70890 | 34.667 | 150 | 95 | 3 | 3 | 150 | 7 | 155 | 3.18e-24 | 92.4 |
| MS.gene77770.t1 | AT1G70840 | 32.000 | 150 | 99 | 3 | 3 | 150 | 20 | 168 | 6.19e-22 | 87.0 |
| MS.gene77770.t1 | AT1G70830 | 32.667 | 150 | 98 | 3 | 3 | 150 | 22 | 170 | 8.76e-22 | 86.7 |
| MS.gene77770.t1 | AT1G70830 | 32.667 | 150 | 98 | 3 | 3 | 150 | 22 | 170 | 1.69e-21 | 86.7 |
| MS.gene77770.t1 | AT5G28000 | 31.333 | 150 | 100 | 3 | 3 | 150 | 13 | 161 | 4.87e-21 | 84.3 |
| MS.gene77770.t1 | AT1G70830 | 32.667 | 150 | 98 | 3 | 3 | 150 | 22 | 170 | 5.71e-21 | 86.3 |
| MS.gene77770.t1 | AT1G70830 | 32.667 | 150 | 98 | 3 | 3 | 150 | 22 | 170 | 1.33e-20 | 86.7 |
| MS.gene77770.t1 | AT1G70830 | 31.333 | 150 | 100 | 3 | 3 | 150 | 184 | 332 | 4.37e-19 | 82.4 |
| MS.gene77770.t1 | AT1G70850 | 31.333 | 150 | 100 | 3 | 3 | 150 | 9 | 157 | 6.43e-20 | 83.2 |
| MS.gene77770.t1 | AT1G70870 | 41.667 | 96 | 55 | 1 | 56 | 151 | 44 | 138 | 1.38e-19 | 80.1 |
| MS.gene77770.t1 | AT1G70830 | 31.333 | 150 | 100 | 3 | 3 | 150 | 137 | 285 | 1.69e-19 | 82.8 |
| MS.gene77770.t1 | AT1G70850 | 31.333 | 150 | 100 | 3 | 3 | 150 | 9 | 157 | 1.69e-19 | 83.2 |
| MS.gene77770.t1 | AT1G70850 | 31.429 | 140 | 93 | 3 | 13 | 150 | 175 | 313 | 6.75e-18 | 79.0 |
| MS.gene77770.t1 | AT1G70850 | 31.333 | 150 | 100 | 3 | 3 | 150 | 9 | 157 | 1.69e-19 | 83.2 |
| MS.gene77770.t1 | AT1G70850 | 31.429 | 140 | 93 | 3 | 13 | 150 | 175 | 313 | 6.75e-18 | 79.0 |
| MS.gene77770.t1 | AT1G23120 | 29.167 | 144 | 97 | 3 | 7 | 150 | 7 | 145 | 1.81e-19 | 79.7 |
| MS.gene77770.t1 | AT1G23130 | 29.530 | 149 | 103 | 2 | 3 | 150 | 10 | 157 | 3.04e-19 | 79.7 |
| MS.gene77770.t1 | AT1G23120 | 29.167 | 144 | 97 | 3 | 7 | 150 | 57 | 195 | 4.01e-19 | 80.1 |
| MS.gene77770.t1 | AT1G70880 | 30.667 | 150 | 101 | 3 | 3 | 150 | 8 | 156 | 1.17e-18 | 78.2 |
| MS.gene77770.t1 | AT4G23670 | 32.680 | 153 | 100 | 3 | 1 | 152 | 1 | 151 | 2.23e-18 | 77.0 |
| MS.gene77770.t1 | AT1G14930 | 31.210 | 157 | 105 | 3 | 1 | 156 | 1 | 155 | 2.37e-18 | 77.0 |
| MS.gene77770.t1 | AT2G01520 | 30.065 | 153 | 104 | 3 | 1 | 152 | 1 | 151 | 1.14e-16 | 72.8 |
| MS.gene77770.t1 | AT4G23680 | 30.921 | 152 | 102 | 3 | 1 | 151 | 1 | 150 | 1.00e-15 | 70.1 |
| MS.gene77770.t1 | AT4G14060 | 30.065 | 153 | 104 | 3 | 1 | 152 | 1 | 151 | 3.51e-15 | 68.9 |
| MS.gene77770.t1 | AT1G14940 | 29.299 | 157 | 108 | 3 | 1 | 156 | 1 | 155 | 6.08e-15 | 68.2 |
| MS.gene77770.t1 | AT1G35260 | 25.166 | 151 | 109 | 3 | 2 | 150 | 1 | 149 | 6.48e-15 | 68.2 |
| MS.gene77770.t1 | AT2G01530 | 29.412 | 153 | 105 | 3 | 1 | 152 | 1 | 151 | 1.42e-14 | 67.4 |
| MS.gene77770.t1 | AT1G24020 | 30.263 | 152 | 104 | 2 | 1 | 151 | 1 | 151 | 5.84e-14 | 65.9 |
| MS.gene77770.t1 | AT1G24020 | 30.263 | 152 | 104 | 2 | 1 | 151 | 1 | 151 | 5.84e-14 | 65.9 |
| MS.gene77770.t1 | AT1G14950 | 28.025 | 157 | 110 | 3 | 1 | 156 | 1 | 155 | 3.98e-13 | 63.5 |
| MS.gene77770.t1 | AT1G30990 | 29.139 | 151 | 103 | 4 | 1 | 150 | 1 | 148 | 4.49e-13 | 63.2 |
| MS.gene77770.t1 | AT3G26460 | 28.205 | 156 | 104 | 5 | 1 | 152 | 1 | 152 | 1.56e-11 | 59.3 |
Find 29 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCATTATAGGGTCTTTA+AGG | 0.251134 | 8.1:+59920713 | MS.gene77770:CDS |
| GAGATATTGATGAGCATTAT+AGG | 0.261538 | 8.1:+59920703 | MS.gene77770:CDS |
| AATGGCTACATGGAACATTT+TGG | 0.264766 | 8.1:+59920828 | MS.gene77770:CDS |
| GGTAAGCTCAGTACTGAAAT+TGG | 0.267652 | 8.1:+59918302 | MS.gene77770:CDS |
| ATCTTCACCTTCATGAAGTT+TGG | 0.293563 | 8.1:-59918411 | None:intergenic |
| ATGGCACTGCTGCTGCTAAA+TGG | 0.310932 | 8.1:+59920763 | MS.gene77770:CDS |
| CACCCTTATCAATTACTTCA+AGG | 0.382574 | 8.1:-59920740 | None:intergenic |
| AAATGTTCCATGTAGCCATT+TGG | 0.413070 | 8.1:-59920825 | None:intergenic |
| CATCCTTGAAGTAATTGATA+AGG | 0.441221 | 8.1:+59920737 | MS.gene77770:CDS |
| CACCTTCATGAAGTTTGGTA+TGG | 0.456107 | 8.1:-59918406 | None:intergenic |
| AACACTTATAAGCTCTTTGG+TGG | 0.457999 | 8.1:+59920681 | MS.gene77770:CDS |
| TTCTAAGAAATGGTGCTCTC+TGG | 0.461766 | 8.1:+59918281 | None:intergenic |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8.1:+59918455 | MS.gene77770:CDS |
| AACTTCATGAAGGTGAAGAT+TGG | 0.483425 | 8.1:+59918414 | MS.gene77770:CDS |
| ATCCTTGAAGTAATTGATAA+GGG | 0.489024 | 8.1:+59920738 | MS.gene77770:CDS |
| AGATTGGCATCACTCTGATT+CGG | 0.512517 | 8.1:+59918430 | MS.gene77770:CDS |
| TGACCCTCCAAATGGCTACA+TGG | 0.521176 | 8.1:+59920818 | MS.gene77770:CDS |
| GAGGATATTGACCCTCCAAA+TGG | 0.540200 | 8.1:+59920810 | MS.gene77770:CDS |
| TGTTCCATGTAGCCATTTGG+AGG | 0.542543 | 8.1:-59920822 | None:intergenic |
| GAAGTAATTGATAAGGGTGA+TGG | 0.549119 | 8.1:+59920744 | MS.gene77770:CDS |
| AGATATTGATGAGCATTATA+GGG | 0.551405 | 8.1:+59920704 | MS.gene77770:CDS |
| GTTGATGCTCATCTTGTCAA+AGG | 0.600604 | 8.1:+59920867 | MS.gene77770:CDS |
| CACCATACCAAACTTCATGA+AGG | 0.601337 | 8.1:+59918404 | MS.gene77770:CDS |
| ATAATTCACACCAGATGGCA+AGG | 0.615701 | 8.1:+59920608 | MS.gene77770:intron |
| ACTCTGATTCGGTTAAACAC+TGG | 0.619526 | 8.1:+59918441 | MS.gene77770:CDS |
| GTTCCATGTAGCCATTTGGA+GGG | 0.622662 | 8.1:-59920821 | None:intergenic |
| TAGATTGTAGAACTTATCAG+AGG | 0.623153 | 8.1:-59918336 | None:intergenic |
| AGATTGTAGAACTTATCAGA+GGG | 0.653447 | 8.1:-59918335 | None:intergenic |
| TGAATATGAAAAGATCAATG+AGG | 0.667026 | 8.1:+59920791 | MS.gene77770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTATATGTTAAAAAAAT+AGG | + | chr8.1:59920515-59920534 | MS.gene77770:intron | 10.0% |
| !! | GTAAAAATTATGAATTATTT+GGG | + | chr8.1:59920356-59920375 | MS.gene77770:intron | 10.0% |
| !! | TATGAACAATAAATATTTAT+AGG | - | chr8.1:59920420-59920439 | None:intergenic | 10.0% |
| !! | TGTAAAAATTATGAATTATT+TGG | + | chr8.1:59920355-59920374 | MS.gene77770:intron | 10.0% |
| !!! | AATATAATAGTTTTCTTTTT+AGG | + | chr8.1:59920479-59920498 | MS.gene77770:intron | 10.0% |
| !!! | AGTTTTTTTTTTTTTTTTTG+TGG | - | chr8.1:59920115-59920134 | None:intergenic | 10.0% |
| !!! | GCTTTTAATATTTTTTTTTA+TGG | - | chr8.1:59920187-59920206 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAACTACACAA+CGG | + | chr8.1:59920121-59920140 | MS.gene77770:intron | 15.0% |
| !! | AATCATATAAAGAATATATG+TGG | + | chr8.1:59920390-59920409 | MS.gene77770:intron | 15.0% |
| !! | ATGATTACAAACTATTAAAA+TGG | - | chr8.1:59919129-59919148 | None:intergenic | 15.0% |
| !! | GTACAACATAAATAAAATTA+AGG | + | chr8.1:59919542-59919561 | MS.gene77770:intron | 15.0% |
| !! | TCATAAAATATGTCAATAAT+TGG | + | chr8.1:59919512-59919531 | MS.gene77770:intron | 15.0% |
| !!! | AATTTTATTTATGTTGTACT+GGG | - | chr8.1:59919541-59919560 | None:intergenic | 15.0% |
| !!! | TAATTTTATTTATGTTGTAC+TGG | - | chr8.1:59919542-59919561 | None:intergenic | 15.0% |
| !!! | TCTTTAGAAAAAATATTCAT+TGG | + | chr8.1:59920444-59920463 | MS.gene77770:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGTGG+TGG | - | chr8.1:59920112-59920131 | None:intergenic | 15.0% |
| !! | AATAATCCTCTATAGATATA+AGG | + | chr8.1:59919376-59919395 | MS.gene77770:intron | 20.0% |
| !! | AATCATATAAGATGATGATT+TGG | - | chr8.1:59918517-59918536 | None:intergenic | 20.0% |
| !! | CAAATGAATTCTATAAAGAT+TGG | + | chr8.1:59918624-59918643 | MS.gene77770:intron | 20.0% |
| !! | CAATCTTTATAGAATTCATT+TGG | - | chr8.1:59918626-59918645 | None:intergenic | 20.0% |
| !! | GAAATAAACTCAAAACTTAA+AGG | - | chr8.1:59919715-59919734 | None:intergenic | 20.0% |
| !! | TAGGTCTTCTATAAAATTAT+GGG | - | chr8.1:59918834-59918853 | None:intergenic | 20.0% |
| !! | TGTACACATCAATAAAAAAT+AGG | + | chr8.1:59919173-59919192 | MS.gene77770:intron | 20.0% |
| !! | TTAGGTCTTCTATAAAATTA+TGG | - | chr8.1:59918835-59918854 | None:intergenic | 20.0% |
| !!! | TTAAAGAGATTTGATTTTGT+AGG | + | chr8.1:59919068-59919087 | MS.gene77770:intron | 20.0% |
| !!! | TTTAAGTTTGAAGTTTGTTT+CGG | + | chr8.1:59919585-59919604 | MS.gene77770:intron | 20.0% |
| ! | AAAAACACTTATAAGCTCTT+TGG | + | chr8.1:59920678-59920697 | MS.gene77770:CDS | 25.0% |
| ! | AAAATAGGAAAATACTTGTG+TGG | + | chr8.1:59919188-59919207 | MS.gene77770:intron | 25.0% |
| ! | AAAATGTCGAAAATAATCCT+AGG | + | chr8.1:59919443-59919462 | MS.gene77770:intron | 25.0% |
| ! | AGATATTGATGAGCATTATA+GGG | + | chr8.1:59920704-59920723 | MS.gene77770:CDS | 25.0% |
| ! | ATCCTTGAAGTAATTGATAA+GGG | + | chr8.1:59920738-59920757 | MS.gene77770:CDS | 25.0% |
| ! | CAAACAAACTTCAAACTTAA+AGG | - | chr8.1:59919646-59919665 | None:intergenic | 25.0% |
| ! | CTATACTTCTAACAGAAAAA+AGG | + | chr8.1:59918580-59918599 | MS.gene77770:intron | 25.0% |
| ! | GAAACAAACTTCAAACTTAA+AGG | - | chr8.1:59919586-59919605 | None:intergenic | 25.0% |
| ! | TGAATATGAAAAGATCAATG+AGG | + | chr8.1:59920791-59920810 | MS.gene77770:CDS | 25.0% |
| ! | TTAATGTTACTGTAGTTGTT+AGG | - | chr8.1:59918853-59918872 | None:intergenic | 25.0% |
| !! | AGTTTGTTTGAAGTTTGTTT+CGG | + | chr8.1:59919656-59919675 | MS.gene77770:intron | 25.0% |
| !! | ATAAGTCCTTTAAGTTTCTA+AGG | - | chr8.1:59919866-59919885 | None:intergenic | 25.0% |
| !! | CTTTTCTATCAAATCAACTT+TGG | - | chr8.1:59919769-59919788 | None:intergenic | 25.0% |
| !! | CTTTTGATCTAAAAGATACA+AGG | + | chr8.1:59918901-59918920 | MS.gene77770:intron | 25.0% |
| !!! | GTTTTGAGTTTATTTCAGAT+AGG | + | chr8.1:59919719-59919738 | MS.gene77770:intron | 25.0% |
| !!! | TTTAAGTTTCGAGTTTGTTT+CGG | - | chr8.1:59919798-59919817 | None:intergenic | 25.0% |
| AGATTGTAGAACTTATCAGA+GGG | - | chr8.1:59918338-59918357 | None:intergenic | 30.0% | |
| AGTCAACCTTATATCTATAG+AGG | - | chr8.1:59919385-59919404 | None:intergenic | 30.0% | |
| ATAGGTCCATTAAGTTTCTA+AGG | + | chr8.1:59919679-59919698 | MS.gene77770:intron | 30.0% | |
| ATCTGACCTTAGAAACTTAA+TGG | - | chr8.1:59919688-59919707 | None:intergenic | 30.0% | |
| CATCCTTGAAGTAATTGATA+AGG | + | chr8.1:59920737-59920756 | MS.gene77770:CDS | 30.0% | |
| CGAAAATAATCCTAGGTATA+AGG | + | chr8.1:59919450-59919469 | MS.gene77770:intron | 30.0% | |
| CGACATAATAACATTTGCAA+AGG | + | chr8.1:59919095-59919114 | MS.gene77770:intron | 30.0% | |
| CTGAAACCTTAGAAACTTAA+AGG | + | chr8.1:59919857-59919876 | MS.gene77770:intron | 30.0% | |
| CTGAAACCTTAGAAACTTAA+AGG | - | chr8.1:59919876-59919857 | None:intergenic | 30.0% | |
| GAAACAAACTCGAAACTTAA+AGG | + | chr8.1:59919797-59919816 | MS.gene77770:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr8.1:59920068-59920087 | MS.gene77770:intron | 30.0% | |
| GAGATATTGATGAGCATTAT+AGG | + | chr8.1:59920703-59920722 | MS.gene77770:CDS | 30.0% | |
| GATACAAACGTGAAACTTAA+AGG | + | chr8.1:59919888-59919907 | MS.gene77770:intron | 30.0% | |
| TAGATTGTAGAACTTATCAG+AGG | - | chr8.1:59918339-59918358 | None:intergenic | 30.0% | |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | + | chr8.1:59919608-59919627 | MS.gene77770:intron | 30.0% |
| ! | GTTTGTTGAATGTTAGTTTG+CGG | - | chr8.1:59919037-59919056 | None:intergenic | 30.0% |
| !! | AAGCCAGTGTTGTTAATTTT+AGG | - | chr8.1:59919932-59919951 | None:intergenic | 30.0% |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | + | chr8.1:59919619-59919638 | MS.gene77770:intron | 30.0% |
| !! | AAGTTTCTAAGGTTTCAGAT+TGG | - | chr8.1:59919638-59919619 | None:intergenic | 30.0% |
| !! | AGAGATTTGATTTTGTAGGA+AGG | + | chr8.1:59919072-59919091 | MS.gene77770:intron | 30.0% |
| !! | ATAGATATAAGGTTGACTTG+TGG | + | chr8.1:59919387-59919406 | MS.gene77770:intron | 30.0% |
| !! | TTAAGTTTCTAAGGTCAGAT+AGG | + | chr8.1:59919688-59919707 | MS.gene77770:intron | 30.0% |
| !! | TTTGTTGAATGTTAGTTTGC+GGG | - | chr8.1:59919036-59919055 | None:intergenic | 30.0% |
| !! | TTTTTAGAGAAAGACTTGTG+TGG | - | chr8.1:59919357-59919376 | None:intergenic | 30.0% |
| AAAAACTACACAACGGACAA+TGG | + | chr8.1:59920128-59920147 | MS.gene77770:intron | 35.0% | |
| AAAAGAGTCGAAAGAGAAAG+AGG | - | chr8.1:59918957-59918976 | None:intergenic | 35.0% | |
| AAACACTGGACTTATGTCAT+AGG | + | chr8.1:59918455-59918474 | MS.gene77770:CDS | 35.0% | |
| AAAGAGAAAGAGGTGATTGA+AGG | - | chr8.1:59918947-59918966 | None:intergenic | 35.0% | |
| AAATGTTCCATGTAGCCATT+TGG | - | chr8.1:59920828-59920847 | None:intergenic | 35.0% | |
| AACACTTATAAGCTCTTTGG+TGG | + | chr8.1:59920681-59920700 | MS.gene77770:CDS | 35.0% | |
| AACTTCAAACTTAAAGGACC+CGG | - | chr8.1:59919580-59919599 | None:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | chr8.1:59918414-59918433 | MS.gene77770:CDS | 35.0% | |
| AAGAGAGAAGAGAGAGAAAA+TGG | + | chr8.1:59919269-59919288 | MS.gene77770:intron | 35.0% | |
| ACATCATAATTCACACCAGA+TGG | + | chr8.1:59920603-59920622 | MS.gene77770:intron | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | - | chr8.1:59918414-59918433 | None:intergenic | 35.0% | |
| CACCCTTATCAATTACTTCA+AGG | - | chr8.1:59920743-59920762 | None:intergenic | 35.0% | |
| CTTGAAAATCTCATGCCAAA+TGG | + | chr8.1:59919009-59919028 | MS.gene77770:intron | 35.0% | |
| GAAGTAATTGATAAGGGTGA+TGG | + | chr8.1:59920744-59920763 | MS.gene77770:CDS | 35.0% | |
| GATACATTGAGACTAACCTA+AGG | + | chr8.1:59918646-59918665 | MS.gene77770:intron | 35.0% | |
| TGAGCATTATAGGGTCTTTA+AGG | + | chr8.1:59920713-59920732 | MS.gene77770:CDS | 35.0% | |
| TGCATAATATATGCAAGGTC+TGG | + | chr8.1:59920073-59920092 | MS.gene77770:intron | 35.0% | |
| TGGCCTAAAATTAACAACAC+TGG | + | chr8.1:59919926-59919945 | MS.gene77770:intron | 35.0% | |
| TGGTGTGAATTATGATGTCA+CGG | - | chr8.1:59920601-59920620 | None:intergenic | 35.0% | |
| ! | AATCAACTTTGGCTTAACAG+AGG | - | chr8.1:59919758-59919777 | None:intergenic | 35.0% |
| ! | AATGGCTACATGGAACATTT+TGG | + | chr8.1:59920828-59920847 | MS.gene77770:CDS | 35.0% |
| ! | GTTTGAAGTTTGTTTCGGAT+AGG | + | chr8.1:59919590-59919609 | MS.gene77770:intron | 35.0% |
| ! | TAAGCTTAACTCAGTTGGTA+TGG | + | chr8.1:59920046-59920065 | MS.gene77770:intron | 35.0% |
| ! | TCTCTTTCGACTCTTTTGAA+CGG | + | chr8.1:59918960-59918979 | MS.gene77770:intron | 35.0% |
| !! | CTTAACAGAGGTTGATAGAA+AGG | - | chr8.1:59919746-59919765 | None:intergenic | 35.0% |
| !! | GTTTCGAGTTTGTTTCAGAT+TGG | - | chr8.1:59919793-59919812 | None:intergenic | 35.0% |
| !! | TGATGATTTGGTTATCGATC+AGG | - | chr8.1:59918505-59918524 | None:intergenic | 35.0% |
| !! | TTTGGCATGAGATTTTCAAG+TGG | - | chr8.1:59919009-59919028 | None:intergenic | 35.0% |
| ACTCGTAAGCTTAACTCAGT+TGG | + | chr8.1:59920041-59920060 | MS.gene77770:intron | 40.0% | |
| ACTTCAAACTTAAAGGACCC+GGG | - | chr8.1:59919579-59919598 | None:intergenic | 40.0% | |
| AGAAAGAGGTGATTGAAGGA+GGG | - | chr8.1:59918943-59918962 | None:intergenic | 40.0% | |
| AGATTGGCATCACTCTGATT+CGG | + | chr8.1:59918430-59918449 | MS.gene77770:CDS | 40.0% | |
| ATAATTCACACCAGATGGCA+AGG | + | chr8.1:59920608-59920627 | MS.gene77770:intron | 40.0% | |
| ATACTTCAGTGCCATAGCAA+TGG | - | chr8.1:59918808-59918827 | None:intergenic | 40.0% | |
| ATTAAGGTCAAATACCTCCC+CGG | + | chr8.1:59919558-59919577 | MS.gene77770:intron | 40.0% | |
| CACCATACCAAACTTCATGA+AGG | + | chr8.1:59918404-59918423 | MS.gene77770:CDS | 40.0% | |
| CACCTTCATGAAGTTTGGTA+TGG | - | chr8.1:59918409-59918428 | None:intergenic | 40.0% | |
| GAAAATACTTGTGTGGACCA+AGG | + | chr8.1:59919195-59919214 | MS.gene77770:intron | 40.0% | |
| GAAACTTAAAGGACTCACGA+AGG | + | chr8.1:59919899-59919918 | MS.gene77770:intron | 40.0% | |
| GGTGTGAATTATGATGTCAC+GGG | - | chr8.1:59920600-59920619 | None:intergenic | 40.0% | |
| GTGGTCACAACCAAAGAAAT+GGG | + | chr8.1:59919233-59919252 | MS.gene77770:intron | 40.0% | |
| GTTGATGCTCATCTTGTCAA+AGG | + | chr8.1:59920867-59920886 | MS.gene77770:CDS | 40.0% | |
| TCTCTTCTCTCCCATTTCTT+TGG | - | chr8.1:59919246-59919265 | None:intergenic | 40.0% | |
| TGTGACCAAACTCAATTGTG+TGG | + | chr8.1:59919324-59919343 | MS.gene77770:intron | 40.0% | |
| TGTGGTCACAACCAAAGAAA+TGG | + | chr8.1:59919232-59919251 | MS.gene77770:intron | 40.0% | |
| TTTGGTTGTGACCACACAAT+GGG | - | chr8.1:59919228-59919247 | None:intergenic | 40.0% | |
| ! | ACAAGTCAAGCCTTATACCT+AGG | - | chr8.1:59919463-59919482 | None:intergenic | 40.0% |
| ! | GGTAAGCTCAGTACTGAAAT+TGG | + | chr8.1:59918302-59918321 | MS.gene77770:CDS | 40.0% |
| ! | TAGGTATAAGGCTTGACTTG+TGG | + | chr8.1:59919462-59919481 | MS.gene77770:intron | 40.0% |
| !! | AAAGGACTCACGAAGGTATT+TGG | + | chr8.1:59919906-59919925 | MS.gene77770:intron | 40.0% |
| !! | ACTCTGATTCGGTTAAACAC+TGG | + | chr8.1:59918441-59918460 | MS.gene77770:CDS | 40.0% |
| !! | GTTTCGAGTTTGTTTCGGAT+AGG | - | chr8.1:59919824-59919843 | None:intergenic | 40.0% |
| !! | TATAAGGCTTGACTTGTGGT+TGG | + | chr8.1:59919466-59919485 | MS.gene77770:intron | 40.0% |
| !!! | AGATTTTCAAGTGGAAGGCT+GGG | - | chr8.1:59919000-59919019 | None:intergenic | 40.0% |
| !!! | GCATGAGATTTTCAAGTGGA+AGG | - | chr8.1:59919005-59919024 | None:intergenic | 40.0% |
| CACACATCCACACACATCAA+CGG | + | chr8.1:59918753-59918772 | MS.gene77770:intron | 45.0% | |
| CAGGACCACACAATTGAGTT+TGG | - | chr8.1:59919332-59919351 | None:intergenic | 45.0% | |
| CTAACCTAAGGACTCCACTT+TGG | + | chr8.1:59918658-59918677 | MS.gene77770:intron | 45.0% | |
| CTTCAAACTTAAAGGACCCG+GGG | - | chr8.1:59919578-59919597 | None:intergenic | 45.0% | |
| CTTTGGTTGTGACCACACAA+TGG | - | chr8.1:59919229-59919248 | None:intergenic | 45.0% | |
| GAGAAAGACTTGTGTGGATC+AGG | - | chr8.1:59919351-59919370 | None:intergenic | 45.0% | |
| GAGAAAGAGGTGATTGAAGG+AGG | - | chr8.1:59918944-59918963 | None:intergenic | 45.0% | |
| GAGGATATTGACCCTCCAAA+TGG | + | chr8.1:59920810-59920829 | MS.gene77770:CDS | 45.0% | |
| GTTCCATGTAGCCATTTGGA+GGG | - | chr8.1:59920824-59920843 | None:intergenic | 45.0% | |
| TGATGTGTGTGGATGTGTGT+GGG | - | chr8.1:59918752-59918771 | None:intergenic | 45.0% | |
| TGCCATTAATGGCACCAAAG+TGG | - | chr8.1:59918675-59918694 | None:intergenic | 45.0% | |
| TGTTCCATGTAGCCATTTGG+AGG | - | chr8.1:59920825-59920844 | None:intergenic | 45.0% | |
| TTAAGGTCAAATACCTCCCC+GGG | + | chr8.1:59919559-59919578 | MS.gene77770:intron | 45.0% | |
| TTGATGTGTGTGGATGTGTG+TGG | - | chr8.1:59918753-59918772 | None:intergenic | 45.0% | |
| TTGGTTGTGACCACACAATG+GGG | - | chr8.1:59919227-59919246 | None:intergenic | 45.0% | |
| !! | ATGCAATGGTATGGTGCCAT+TGG | - | chr8.1:59918698-59918717 | None:intergenic | 45.0% |
| !! | CTCCACTTTGGTGCCATTAA+TGG | + | chr8.1:59918670-59918689 | MS.gene77770:intron | 45.0% |
| !! | GATTGGTTCTATGGCACCAA+TGG | + | chr8.1:59918780-59918799 | MS.gene77770:intron | 45.0% |
| !! | TGTTAGTTTGCGGGACCATT+TGG | - | chr8.1:59919027-59919046 | None:intergenic | 45.0% |
| !!! | GAGATTTTCAAGTGGAAGGC+TGG | - | chr8.1:59919001-59919020 | None:intergenic | 45.0% |
| AAGGACCAAACCCCATTGTG+TGG | + | chr8.1:59919214-59919233 | MS.gene77770:intron | 50.0% | |
| ATGGCACTGCTGCTGCTAAA+TGG | + | chr8.1:59920763-59920782 | MS.gene77770:CDS | 50.0% | |
| CACCAATGGCACCATTGCTA+TGG | + | chr8.1:59918794-59918813 | MS.gene77770:intron | 50.0% | |
| CATGTGTGTACCTTGCCATC+TGG | - | chr8.1:59920621-59920640 | None:intergenic | 50.0% | |
| GATGTGTGTGGATGTGTGTG+GGG | - | chr8.1:59918751-59918770 | None:intergenic | 50.0% | |
| GTGTGTGTGATGTGTGTGTG+TGG | - | chr8.1:59918726-59918745 | None:intergenic | 50.0% | |
| TGACCCTCCAAATGGCTACA+TGG | + | chr8.1:59920818-59920837 | MS.gene77770:CDS | 50.0% | |
| TGTGACCACACAATGGGGTT+TGG | - | chr8.1:59919222-59919241 | None:intergenic | 50.0% | |
| TGTGTGATGTGTGTGTGTGG+TGG | - | chr8.1:59918723-59918742 | None:intergenic | 50.0% | |
| ! | ACACAATGGGGTTTGGTCCT+TGG | - | chr8.1:59919215-59919234 | None:intergenic | 50.0% |
| ! | GTGGTGGAGATGCAATGGTA+TGG | - | chr8.1:59918707-59918726 | None:intergenic | 50.0% |
| ! | TGTGTGTGGTGGAGATGCAA+TGG | - | chr8.1:59918712-59918731 | None:intergenic | 50.0% |
| !! | AACGGCCAGGATTGGTTCTA+TGG | + | chr8.1:59918771-59918790 | MS.gene77770:intron | 50.0% |
| !! | GGTGCCATTAATGGCACCAA+TGG | + | chr8.1:59918679-59918698 | MS.gene77770:intron | 50.0% |
| !! | GGTGCCATTGGTGCCATTAA+TGG | - | chr8.1:59918686-59918705 | None:intergenic | 50.0% |
| !! | TGCCATAGCAATGGTGCCAT+TGG | - | chr8.1:59918799-59918818 | None:intergenic | 50.0% |
| !! | TGGTGCCATAGAACCAATCC+TGG | - | chr8.1:59918779-59918798 | None:intergenic | 50.0% |
| ATCCACACACATCAACGGCC+AGG | + | chr8.1:59918758-59918777 | MS.gene77770:intron | 55.0% | |
| ATCCTGGCCGTTGATGTGTG+TGG | - | chr8.1:59918763-59918782 | None:intergenic | 55.0% | |
| CAAACTTAAAGGACCCGGGG+AGG | - | chr8.1:59919575-59919594 | None:intergenic | 55.0% | |
| CACACATCAACGGCCAGGAT+TGG | + | chr8.1:59918763-59918782 | MS.gene77770:intron | 55.0% | |
| GGCACCAAAGTGGAGTCCTT+AGG | - | chr8.1:59918665-59918684 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 59918290 | 59920908 | 59918290 | ID=MS.gene77770 |
| chr8.1 | mRNA | 59918290 | 59920908 | 59918290 | ID=MS.gene77770.t1;Parent=MS.gene77770 |
| chr8.1 | exon | 59918290 | 59918476 | 59918290 | ID=MS.gene77770.t1.exon1;Parent=MS.gene77770.t1 |
| chr8.1 | CDS | 59918290 | 59918476 | 59918290 | ID=cds.MS.gene77770.t1;Parent=MS.gene77770.t1 |
| chr8.1 | exon | 59920622 | 59920908 | 59920622 | ID=MS.gene77770.t1.exon2;Parent=MS.gene77770.t1 |
| chr8.1 | CDS | 59920622 | 59920908 | 59920622 | ID=cds.MS.gene77770.t1;Parent=MS.gene77770.t1 |
| Gene Sequence |
| Protein sequence |
