Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59849.t1 | XP_003628202.1 | 94.9 | 157 | 8 | 0 | 1 | 157 | 1 | 157 | 1.80E-85 | 325.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59849.t1 | Q9SSK5 | 36.2 | 152 | 94 | 3 | 3 | 152 | 7 | 157 | 9.2e-22 | 104.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59849.t1 | B7FHH7 | 94.9 | 157 | 8 | 0 | 1 | 157 | 1 | 157 | 1.3e-85 | 325.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051648 | MS.gene59849 | 0.826682 | 2.37E-54 | -1.69E-46 |
MS.gene051718 | MS.gene59849 | 0.803969 | 2.71E-49 | -1.69E-46 |
MS.gene052150 | MS.gene59849 | 0.823309 | 1.48E-53 | -1.69E-46 |
MS.gene052151 | MS.gene59849 | 0.817892 | 2.60E-52 | -1.69E-46 |
MS.gene052708 | MS.gene59849 | 0.800681 | 1.29E-48 | -1.69E-46 |
MS.gene055251 | MS.gene59849 | 0.825549 | 4.41E-54 | -1.69E-46 |
MS.gene058382 | MS.gene59849 | 0.874997 | 4.36E-68 | -1.69E-46 |
MS.gene058386 | MS.gene59849 | 0.824295 | 8.72E-54 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59849.t1 | MTR_8g045520 | 94.904 | 157 | 8 | 0 | 1 | 157 | 1 | 157 | 1.55e-109 | 308 |
MS.gene59849.t1 | MTR_8g045490 | 81.529 | 157 | 28 | 1 | 1 | 157 | 1 | 156 | 1.94e-92 | 265 |
MS.gene59849.t1 | MTR_8g045400 | 80.255 | 157 | 30 | 1 | 1 | 157 | 1 | 156 | 7.89e-91 | 261 |
MS.gene59849.t1 | MTR_8g045695 | 79.618 | 157 | 31 | 1 | 1 | 157 | 1 | 156 | 9.00e-90 | 258 |
MS.gene59849.t1 | MTR_8g045555 | 76.821 | 151 | 35 | 0 | 1 | 151 | 1 | 151 | 5.99e-87 | 251 |
MS.gene59849.t1 | MTR_8g045300 | 75.641 | 156 | 38 | 0 | 1 | 156 | 1 | 156 | 1.96e-86 | 250 |
MS.gene59849.t1 | MTR_8g045665 | 76.433 | 157 | 36 | 1 | 1 | 157 | 1 | 156 | 3.04e-85 | 247 |
MS.gene59849.t1 | MTR_8g045570 | 76.159 | 151 | 36 | 0 | 1 | 151 | 1 | 151 | 3.90e-85 | 246 |
MS.gene59849.t1 | MTR_8g045640 | 75.159 | 157 | 38 | 1 | 1 | 157 | 1 | 156 | 7.39e-84 | 243 |
MS.gene59849.t1 | MTR_8g045735 | 74.194 | 155 | 39 | 1 | 1 | 155 | 1 | 154 | 1.98e-83 | 242 |
MS.gene59849.t1 | MTR_8g045560 | 72.611 | 157 | 42 | 1 | 1 | 157 | 1 | 156 | 1.12e-80 | 235 |
MS.gene59849.t1 | MTR_1g030810 | 42.208 | 154 | 86 | 2 | 1 | 152 | 1 | 153 | 4.02e-39 | 130 |
MS.gene59849.t1 | MTR_1g030820 | 38.312 | 154 | 92 | 2 | 1 | 152 | 1 | 153 | 1.16e-37 | 126 |
MS.gene59849.t1 | MTR_1g030840 | 36.538 | 156 | 91 | 4 | 1 | 149 | 1 | 155 | 5.89e-28 | 102 |
MS.gene59849.t1 | MTR_8g012550 | 32.000 | 150 | 99 | 3 | 6 | 154 | 8 | 155 | 1.41e-25 | 95.9 |
MS.gene59849.t1 | MTR_1g031640 | 35.374 | 147 | 86 | 5 | 7 | 151 | 7 | 146 | 4.32e-24 | 91.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59849.t1 | AT5G28010 | 34.211 | 152 | 97 | 3 | 3 | 152 | 15 | 165 | 1.26e-26 | 99.0 |
MS.gene59849.t1 | AT5G28010 | 34.211 | 152 | 97 | 3 | 3 | 152 | 15 | 165 | 1.26e-26 | 99.0 |
MS.gene59849.t1 | AT1G70890 | 36.184 | 152 | 94 | 3 | 3 | 152 | 7 | 157 | 3.28e-26 | 97.4 |
MS.gene59849.t1 | AT1G70840 | 32.895 | 152 | 99 | 3 | 3 | 152 | 20 | 170 | 2.95e-24 | 92.8 |
MS.gene59849.t1 | AT1G70830 | 33.553 | 152 | 98 | 3 | 3 | 152 | 22 | 172 | 5.73e-24 | 92.0 |
MS.gene59849.t1 | AT1G70830 | 33.553 | 152 | 98 | 3 | 3 | 152 | 22 | 172 | 1.07e-23 | 92.0 |
MS.gene59849.t1 | AT1G23120 | 31.944 | 144 | 93 | 3 | 10 | 153 | 10 | 148 | 1.39e-23 | 90.5 |
MS.gene59849.t1 | AT1G70870 | 37.748 | 151 | 81 | 4 | 1 | 151 | 1 | 138 | 1.43e-23 | 90.1 |
MS.gene59849.t1 | AT1G70830 | 33.553 | 152 | 98 | 3 | 3 | 152 | 22 | 172 | 4.50e-23 | 91.7 |
MS.gene59849.t1 | AT1G23120 | 31.944 | 144 | 93 | 3 | 10 | 153 | 60 | 198 | 5.23e-23 | 90.5 |
MS.gene59849.t1 | AT1G70830 | 33.553 | 152 | 98 | 3 | 3 | 152 | 22 | 172 | 1.10e-22 | 92.0 |
MS.gene59849.t1 | AT1G70830 | 32.237 | 152 | 100 | 3 | 3 | 152 | 184 | 334 | 3.56e-21 | 88.2 |
MS.gene59849.t1 | AT5G28000 | 30.921 | 152 | 102 | 3 | 3 | 152 | 13 | 163 | 2.84e-22 | 87.4 |
MS.gene59849.t1 | AT1G70850 | 32.450 | 151 | 99 | 3 | 3 | 151 | 9 | 158 | 4.89e-22 | 88.6 |
MS.gene59849.t1 | AT1G70830 | 32.237 | 152 | 100 | 3 | 3 | 152 | 137 | 287 | 1.21e-21 | 88.6 |
MS.gene59849.t1 | AT1G70830 | 28.421 | 95 | 67 | 1 | 59 | 152 | 31 | 125 | 2.96e-11 | 60.5 |
MS.gene59849.t1 | AT1G70850 | 32.450 | 151 | 99 | 3 | 3 | 151 | 9 | 158 | 1.32e-21 | 89.0 |
MS.gene59849.t1 | AT1G70850 | 32.394 | 142 | 93 | 3 | 13 | 152 | 175 | 315 | 7.17e-21 | 87.0 |
MS.gene59849.t1 | AT1G70850 | 32.450 | 151 | 99 | 3 | 3 | 151 | 9 | 158 | 1.32e-21 | 89.0 |
MS.gene59849.t1 | AT1G70850 | 32.394 | 142 | 93 | 3 | 13 | 152 | 175 | 315 | 7.17e-21 | 87.0 |
MS.gene59849.t1 | AT1G24020 | 32.468 | 154 | 100 | 3 | 1 | 152 | 1 | 152 | 6.94e-19 | 78.6 |
MS.gene59849.t1 | AT1G24020 | 32.468 | 154 | 100 | 3 | 1 | 152 | 1 | 152 | 6.94e-19 | 78.6 |
MS.gene59849.t1 | AT4G23670 | 34.194 | 155 | 93 | 4 | 1 | 151 | 1 | 150 | 7.91e-19 | 78.2 |
MS.gene59849.t1 | AT1G23130 | 27.152 | 151 | 108 | 2 | 3 | 152 | 10 | 159 | 2.06e-18 | 77.4 |
MS.gene59849.t1 | AT1G70880 | 27.632 | 152 | 107 | 3 | 3 | 152 | 8 | 158 | 7.15e-18 | 75.9 |
MS.gene59849.t1 | AT1G14930 | 29.605 | 152 | 104 | 3 | 1 | 151 | 1 | 150 | 3.27e-17 | 74.3 |
MS.gene59849.t1 | AT1G35260 | 28.767 | 146 | 100 | 3 | 9 | 152 | 8 | 151 | 8.06e-17 | 73.2 |
MS.gene59849.t1 | AT2G01520 | 28.947 | 152 | 105 | 3 | 1 | 151 | 1 | 150 | 5.41e-16 | 70.9 |
MS.gene59849.t1 | AT4G23680 | 29.677 | 155 | 100 | 4 | 1 | 151 | 1 | 150 | 1.42e-15 | 69.7 |
MS.gene59849.t1 | AT2G01530 | 28.947 | 152 | 105 | 3 | 1 | 151 | 1 | 150 | 1.79e-14 | 67.0 |
MS.gene59849.t1 | AT4G14060 | 29.677 | 155 | 100 | 4 | 1 | 151 | 1 | 150 | 2.10e-14 | 66.6 |
MS.gene59849.t1 | AT1G14940 | 28.477 | 151 | 105 | 3 | 1 | 150 | 1 | 149 | 1.36e-13 | 64.7 |
MS.gene59849.t1 | AT1G14950 | 28.750 | 160 | 105 | 4 | 1 | 156 | 1 | 155 | 1.85e-13 | 64.3 |
MS.gene59849.t1 | AT1G30990 | 29.801 | 151 | 102 | 4 | 1 | 150 | 1 | 148 | 3.95e-13 | 63.5 |
MS.gene59849.t1 | AT3G26460 | 30.380 | 158 | 96 | 6 | 1 | 151 | 1 | 151 | 4.00e-11 | 58.2 |
Find 34 sgRNAs with CRISPR-Local
Find 54 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGGTACTTACAAGCTCTT+TGG | 0.306715 | 8.3:+53869126 | MS.gene59849:CDS |
ATGGCACTGCTGCTGCTAAA+TGG | 0.310932 | 8.3:+53869211 | MS.gene59849:CDS |
AAGGTACTTACAAGCTCTTT+GGG | 0.349654 | 8.3:+53869127 | MS.gene59849:CDS |
CACCCTTATCAATTACTTCA+AGG | 0.382574 | 8.3:-53869188 | None:intergenic |
TATCCTTGAAGTAATTGATA+AGG | 0.405951 | 8.3:+53869185 | MS.gene59849:CDS |
AGATATTGATGAGCACTATA+AGG | 0.414096 | 8.3:+53869152 | MS.gene59849:CDS |
GGTAAACTTATTACTGAACT+TGG | 0.415223 | 8.3:+53868259 | MS.gene59849:CDS |
ATCCTTGAAGTAATTGATAA+GGG | 0.432462 | 8.3:+53869186 | MS.gene59849:CDS |
ATCTTCACCCTCATGCAGCT+TGG | 0.445602 | 8.3:-53868368 | None:intergenic |
AAGTAGTCCATCCAGCCATT+TGG | 0.456227 | 8.3:-53869273 | None:intergenic |
AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8.3:+53868412 | MS.gene59849:CDS |
TGAAATAACAACAGATGGTA+AGG | 0.489687 | 8.3:+53869056 | MS.gene59849:intron |
AGCTGCATGAGGGTGAAGAT+TGG | 0.493681 | 8.3:+53868371 | MS.gene59849:CDS |
TATGACTTATAGAGCAACCT+TGG | 0.515175 | 8.3:-53869340 | None:intergenic |
TGATGCTCATCTTGTCAAGC+AGG | 0.523708 | 8.3:+53869317 | MS.gene59849:CDS |
ATATTGACCCTCCAAATGGC+TGG | 0.527845 | 8.3:+53869262 | MS.gene59849:CDS |
GGATCAAAACACCTGCTGAC+AGG | 0.537625 | 8.3:+53868281 | MS.gene59849:CDS |
GAGGATATTGACCCTCCAAA+TGG | 0.539495 | 8.3:+53869258 | MS.gene59849:CDS |
GTAAACTTATTACTGAACTT+GGG | 0.542207 | 8.3:+53868260 | MS.gene59849:CDS |
AGATTGGCATCACACTGATT+CGG | 0.545548 | 8.3:+53868387 | MS.gene59849:CDS |
ATTGATGAACAAAACAAGAA+AGG | 0.549109 | 8.3:+53869108 | MS.gene59849:CDS |
GAAGTAATTGATAAGGGTGA+TGG | 0.549119 | 8.3:+53869192 | MS.gene59849:CDS |
TAGTCCATCCAGCCATTTGG+AGG | 0.551025 | 8.3:-53869270 | None:intergenic |
ACACTGATTCGGTCAAACAC+TGG | 0.556043 | 8.3:+53868398 | MS.gene59849:CDS |
TGACCCTCCAAATGGCTGGA+TGG | 0.557517 | 8.3:+53869266 | MS.gene59849:CDS |
AGTTTGAAGAACCTGTCAGC+AGG | 0.558598 | 8.3:-53868292 | None:intergenic |
TCATCTTGTCAAGCAGGCCA+AGG | 0.591246 | 8.3:+53869323 | MS.gene59849:CDS |
TCATGAAACCAAGCTGCATG+AGG | 0.602712 | 8.3:+53868360 | MS.gene59849:CDS |
AGGTACTTACAAGCTCTTTG+GGG | 0.621914 | 8.3:+53869128 | MS.gene59849:CDS |
CATGAAACCAAGCTGCATGA+GGG | 0.630684 | 8.3:+53868361 | MS.gene59849:CDS |
GGTACTTACAAGCTCTTTGG+GGG | 0.640678 | 8.3:+53869129 | MS.gene59849:CDS |
GGTACACACATGTCATGAGA+AGG | 0.648648 | 8.3:+53869077 | MS.gene59849:CDS |
AGTCCATCCAGCCATTTGGA+GGG | 0.649199 | 8.3:-53869269 | None:intergenic |
TGAATATGAGAAGATCAATG+AGG | 0.699788 | 8.3:+53869239 | MS.gene59849:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATAATATTTGTCTAATA+TGG | + | chr8.3:53868870-53868889 | MS.gene59849:intron | 10.0% |
!! | AATCTTACTAAAAAATGTTA+AGG | - | chr8.3:53868993-53869012 | None:intergenic | 15.0% |
!! | TAGACAAATATTATTATTGA+TGG | - | chr8.3:53868867-53868886 | None:intergenic | 15.0% |
!!! | TATTTTATTGAAAATAGCAA+CGG | - | chr8.3:53868584-53868603 | None:intergenic | 15.0% |
!! | AACAAAAAATTGTACAATAC+TGG | - | chr8.3:53868828-53868847 | None:intergenic | 20.0% |
!! | ACAAATATTATTATTGATGG+TGG | - | chr8.3:53868864-53868883 | None:intergenic | 20.0% |
!!! | GATCTCTAAAAAATGTTTAA+GGG | + | chr8.3:53868892-53868911 | MS.gene59849:intron | 20.0% |
!!! | TAAACTGCTGTTATTTTTTT+TGG | + | chr8.3:53869020-53869039 | MS.gene59849:intron | 20.0% |
! | AATTAAAGAGATGTACAGAA+AGG | + | chr8.3:53868962-53868981 | MS.gene59849:intron | 25.0% |
! | ATCCTTGAAGTAATTGATAA+GGG | + | chr8.3:53869186-53869205 | MS.gene59849:CDS | 25.0% |
! | ATTGATGAACAAAACAAGAA+AGG | + | chr8.3:53869108-53869127 | MS.gene59849:CDS | 25.0% |
! | GATCCTTATTAAAAATGGAA+AGG | - | chr8.3:53868806-53868825 | None:intergenic | 25.0% |
! | GTAAACTTATTACTGAACTT+GGG | + | chr8.3:53868260-53868279 | MS.gene59849:CDS | 25.0% |
! | TACTGGATCCTTATTAAAAA+TGG | - | chr8.3:53868811-53868830 | None:intergenic | 25.0% |
! | TATCCTTGAAGTAATTGATA+AGG | + | chr8.3:53869185-53869204 | MS.gene59849:CDS | 25.0% |
! | TGTTGTACTACAAATGATAA+CGG | - | chr8.3:53868922-53868941 | None:intergenic | 25.0% |
!! | GGATCTCTAAAAAATGTTTA+AGG | + | chr8.3:53868891-53868910 | MS.gene59849:intron | 25.0% |
!!! | GATCCTTTCCATTTTTAATA+AGG | + | chr8.3:53868800-53868819 | MS.gene59849:intron | 25.0% |
AGATATTGATGAGCACTATA+AGG | + | chr8.3:53869152-53869171 | MS.gene59849:CDS | 30.0% | |
GGTAAACTTATTACTGAACT+TGG | + | chr8.3:53868259-53868278 | MS.gene59849:CDS | 30.0% | |
TGAAATAACAACAGATGGTA+AGG | + | chr8.3:53869056-53869075 | MS.gene59849:intron | 30.0% | |
TGAATATGAGAAGATCAATG+AGG | + | chr8.3:53869239-53869258 | MS.gene59849:CDS | 30.0% | |
TGTTGGCAAGTTAAATTAGT+TGG | - | chr8.3:53868449-53868468 | None:intergenic | 30.0% | |
!! | ACCATCTGTTGTTATTTCAT+GGG | - | chr8.3:53869055-53869074 | None:intergenic | 30.0% |
!! | TACCATCTGTTGTTATTTCA+TGG | - | chr8.3:53869056-53869075 | None:intergenic | 30.0% |
AAACACTGGACTTATGTCAT+AGG | + | chr8.3:53868412-53868431 | MS.gene59849:CDS | 35.0% | |
CAAAATCATCTTGTTGGACT+TGG | + | chr8.3:53868467-53868486 | MS.gene59849:intron | 35.0% | |
CACCCTTATCAATTACTTCA+AGG | - | chr8.3:53869191-53869210 | None:intergenic | 35.0% | |
GAAGTAATTGATAAGGGTGA+TGG | + | chr8.3:53869192-53869211 | MS.gene59849:CDS | 35.0% | |
TGCCAACAAAATCATCTTGT+TGG | + | chr8.3:53868461-53868480 | MS.gene59849:intron | 35.0% | |
! | AAGGTACTTACAAGCTCTTT+GGG | + | chr8.3:53869127-53869146 | MS.gene59849:CDS | 35.0% |
! | GTCCAACAAGATGATTTTGT+TGG | - | chr8.3:53868466-53868485 | None:intergenic | 35.0% |
!! | AAAGGTACTTACAAGCTCTT+TGG | + | chr8.3:53869126-53869145 | MS.gene59849:CDS | 35.0% |
AGGTACTTACAAGCTCTTTG+GGG | + | chr8.3:53869128-53869147 | MS.gene59849:CDS | 40.0% | |
GCCCATGAAATAACAACAGA+TGG | + | chr8.3:53869051-53869070 | MS.gene59849:intron | 40.0% | |
! | AGATTGGCATCACACTGATT+CGG | + | chr8.3:53868387-53868406 | MS.gene59849:CDS | 40.0% |
AAGTAGTCCATCCAGCCATT+TGG | - | chr8.3:53869276-53869295 | None:intergenic | 45.0% | |
AGTTTGAAGAACCTGTCAGC+AGG | - | chr8.3:53868295-53868314 | None:intergenic | 45.0% | |
ATATTGACCCTCCAAATGGC+TGG | + | chr8.3:53869262-53869281 | MS.gene59849:CDS | 45.0% | |
CATGAAACCAAGCTGCATGA+GGG | + | chr8.3:53868361-53868380 | MS.gene59849:CDS | 45.0% | |
GAGGATATTGACCCTCCAAA+TGG | + | chr8.3:53869258-53869277 | MS.gene59849:CDS | 45.0% | |
GGTACACACATGTCATGAGA+AGG | + | chr8.3:53869077-53869096 | MS.gene59849:CDS | 45.0% | |
GGTACTTACAAGCTCTTTGG+GGG | + | chr8.3:53869129-53869148 | MS.gene59849:CDS | 45.0% | |
TCATGAAACCAAGCTGCATG+AGG | + | chr8.3:53868360-53868379 | MS.gene59849:CDS | 45.0% | |
TGATGCTCATCTTGTCAAGC+AGG | + | chr8.3:53869317-53869336 | MS.gene59849:CDS | 45.0% | |
!! | ACACTGATTCGGTCAAACAC+TGG | + | chr8.3:53868398-53868417 | MS.gene59849:CDS | 45.0% |
AGCTGCATGAGGGTGAAGAT+TGG | + | chr8.3:53868371-53868390 | MS.gene59849:CDS | 50.0% | |
AGTCCATCCAGCCATTTGGA+GGG | - | chr8.3:53869272-53869291 | None:intergenic | 50.0% | |
ATCTTCACCCTCATGCAGCT+TGG | - | chr8.3:53868371-53868390 | None:intergenic | 50.0% | |
ATGGCACTGCTGCTGCTAAA+TGG | + | chr8.3:53869211-53869230 | MS.gene59849:CDS | 50.0% | |
GGATCAAAACACCTGCTGAC+AGG | + | chr8.3:53868281-53868300 | MS.gene59849:CDS | 50.0% | |
TAGTCCATCCAGCCATTTGG+AGG | - | chr8.3:53869273-53869292 | None:intergenic | 50.0% | |
TCATCTTGTCAAGCAGGCCA+AGG | + | chr8.3:53869323-53869342 | MS.gene59849:CDS | 50.0% | |
TGACCCTCCAAATGGCTGGA+TGG | + | chr8.3:53869266-53869285 | MS.gene59849:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 53868247 | 53869356 | 53868247 | ID=MS.gene59849 |
chr8.3 | mRNA | 53868247 | 53869356 | 53868247 | ID=MS.gene59849.t1;Parent=MS.gene59849 |
chr8.3 | exon | 53868247 | 53868433 | 53868247 | ID=MS.gene59849.t1.exon1;Parent=MS.gene59849.t1 |
chr8.3 | CDS | 53868247 | 53868433 | 53868247 | ID=cds.MS.gene59849.t1;Parent=MS.gene59849.t1 |
chr8.3 | exon | 53869070 | 53869356 | 53869070 | ID=MS.gene59849.t1.exon2;Parent=MS.gene59849.t1 |
chr8.3 | CDS | 53869070 | 53869356 | 53869070 | ID=cds.MS.gene59849.t1;Parent=MS.gene59849.t1 |
Gene Sequence |
Protein sequence |