Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74353.t1 | XP_003628200.1 | 87.2 | 156 | 20 | 0 | 1 | 156 | 1 | 156 | 8.00E-78 | 299.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74353.t1 | Q9SSK5 | 34.0 | 153 | 98 | 3 | 3 | 153 | 7 | 158 | 9.5e-19 | 94.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74353.t1 | G7L7T5 | 87.2 | 156 | 20 | 0 | 1 | 156 | 1 | 156 | 5.8e-78 | 299.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74353.t1 | MTR_8g045490 | 87.179 | 156 | 20 | 0 | 1 | 156 | 1 | 156 | 4.78e-101 | 286 |
| MS.gene74353.t1 | MTR_8g045520 | 77.070 | 157 | 35 | 1 | 1 | 156 | 1 | 157 | 1.08e-88 | 256 |
| MS.gene74353.t1 | MTR_8g045400 | 76.159 | 151 | 35 | 1 | 1 | 151 | 1 | 150 | 1.07e-84 | 245 |
| MS.gene74353.t1 | MTR_8g045570 | 74.834 | 151 | 38 | 0 | 1 | 151 | 1 | 151 | 3.88e-84 | 244 |
| MS.gene74353.t1 | MTR_8g045695 | 72.611 | 157 | 41 | 2 | 1 | 156 | 1 | 156 | 5.34e-82 | 239 |
| MS.gene74353.t1 | MTR_8g045555 | 74.172 | 151 | 39 | 0 | 1 | 151 | 1 | 151 | 2.36e-80 | 234 |
| MS.gene74353.t1 | MTR_8g045300 | 71.053 | 152 | 44 | 0 | 1 | 152 | 1 | 152 | 2.86e-80 | 234 |
| MS.gene74353.t1 | MTR_8g045735 | 70.861 | 151 | 43 | 1 | 1 | 151 | 1 | 150 | 7.56e-78 | 228 |
| MS.gene74353.t1 | MTR_8g045665 | 70.199 | 151 | 44 | 1 | 1 | 151 | 1 | 150 | 1.00e-75 | 223 |
| MS.gene74353.t1 | MTR_8g045640 | 68.790 | 157 | 47 | 2 | 1 | 156 | 1 | 156 | 1.13e-75 | 223 |
| MS.gene74353.t1 | MTR_8g045560 | 68.212 | 151 | 47 | 1 | 1 | 151 | 1 | 150 | 2.54e-73 | 217 |
| MS.gene74353.t1 | MTR_1g030810 | 43.506 | 154 | 84 | 2 | 1 | 152 | 1 | 153 | 3.48e-39 | 130 |
| MS.gene74353.t1 | MTR_1g030820 | 38.961 | 154 | 91 | 2 | 1 | 152 | 1 | 153 | 1.26e-37 | 126 |
| MS.gene74353.t1 | MTR_1g030840 | 35.849 | 159 | 94 | 4 | 1 | 152 | 1 | 158 | 8.52e-26 | 96.7 |
| MS.gene74353.t1 | MTR_8g012550 | 31.757 | 148 | 98 | 3 | 6 | 152 | 8 | 153 | 3.68e-25 | 94.7 |
| MS.gene74353.t1 | MTR_1g031640 | 36.735 | 147 | 84 | 4 | 7 | 151 | 7 | 146 | 4.73e-23 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74353.t1 | AT5G28010 | 33.987 | 153 | 98 | 3 | 3 | 153 | 15 | 166 | 5.31e-24 | 92.0 |
| MS.gene74353.t1 | AT5G28010 | 33.987 | 153 | 98 | 3 | 3 | 153 | 15 | 166 | 5.31e-24 | 92.0 |
| MS.gene74353.t1 | AT1G70890 | 33.987 | 153 | 98 | 3 | 3 | 153 | 7 | 158 | 8.36e-22 | 86.3 |
| MS.gene74353.t1 | AT1G70840 | 31.579 | 152 | 101 | 3 | 3 | 152 | 20 | 170 | 3.48e-21 | 84.7 |
| MS.gene74353.t1 | AT5G28000 | 31.579 | 152 | 101 | 3 | 3 | 152 | 13 | 163 | 1.01e-20 | 83.6 |
| MS.gene74353.t1 | AT1G70830 | 32.026 | 153 | 101 | 3 | 3 | 153 | 22 | 173 | 2.08e-20 | 82.8 |
| MS.gene74353.t1 | AT1G23120 | 30.263 | 152 | 101 | 3 | 1 | 152 | 1 | 147 | 2.58e-20 | 82.0 |
| MS.gene74353.t1 | AT1G70830 | 32.026 | 153 | 101 | 3 | 3 | 153 | 22 | 173 | 3.93e-20 | 82.8 |
| MS.gene74353.t1 | AT1G23120 | 30.263 | 152 | 101 | 3 | 1 | 152 | 51 | 197 | 1.06e-19 | 81.6 |
| MS.gene74353.t1 | AT1G70830 | 32.026 | 153 | 101 | 3 | 3 | 153 | 22 | 173 | 1.31e-19 | 82.4 |
| MS.gene74353.t1 | AT1G23130 | 30.464 | 151 | 103 | 2 | 3 | 152 | 10 | 159 | 1.54e-19 | 80.5 |
| MS.gene74353.t1 | AT1G70830 | 32.026 | 153 | 101 | 3 | 3 | 153 | 22 | 173 | 2.52e-19 | 83.2 |
| MS.gene74353.t1 | AT1G70830 | 30.719 | 153 | 103 | 3 | 3 | 153 | 184 | 335 | 8.98e-18 | 78.6 |
| MS.gene74353.t1 | AT1G70870 | 43.750 | 96 | 53 | 1 | 56 | 151 | 44 | 138 | 3.19e-19 | 79.0 |
| MS.gene74353.t1 | AT1G70830 | 30.719 | 153 | 103 | 3 | 3 | 153 | 137 | 288 | 4.46e-18 | 79.0 |
| MS.gene74353.t1 | AT4G23670 | 32.895 | 152 | 99 | 3 | 1 | 151 | 1 | 150 | 8.69e-18 | 75.5 |
| MS.gene74353.t1 | AT1G70850 | 30.201 | 149 | 101 | 3 | 3 | 149 | 9 | 156 | 1.62e-17 | 76.6 |
| MS.gene74353.t1 | AT1G70850 | 30.201 | 149 | 101 | 3 | 3 | 149 | 9 | 156 | 2.94e-17 | 77.0 |
| MS.gene74353.t1 | AT1G70850 | 31.469 | 143 | 95 | 3 | 13 | 153 | 175 | 316 | 6.15e-17 | 76.3 |
| MS.gene74353.t1 | AT1G70850 | 30.201 | 149 | 101 | 3 | 3 | 149 | 9 | 156 | 2.94e-17 | 77.0 |
| MS.gene74353.t1 | AT1G70850 | 31.469 | 143 | 95 | 3 | 13 | 153 | 175 | 316 | 6.15e-17 | 76.3 |
| MS.gene74353.t1 | AT1G35260 | 29.452 | 146 | 99 | 3 | 6 | 149 | 5 | 148 | 6.53e-17 | 73.2 |
| MS.gene74353.t1 | AT1G70880 | 28.105 | 153 | 107 | 3 | 3 | 153 | 8 | 159 | 1.49e-16 | 72.4 |
| MS.gene74353.t1 | AT4G23680 | 29.605 | 152 | 104 | 3 | 1 | 151 | 1 | 150 | 2.16e-15 | 69.3 |
| MS.gene74353.t1 | AT2G01520 | 28.947 | 152 | 105 | 3 | 1 | 151 | 1 | 150 | 5.92e-15 | 68.2 |
| MS.gene74353.t1 | AT1G24020 | 31.410 | 156 | 105 | 2 | 1 | 155 | 1 | 155 | 1.49e-14 | 67.4 |
| MS.gene74353.t1 | AT1G24020 | 31.410 | 156 | 105 | 2 | 1 | 155 | 1 | 155 | 1.49e-14 | 67.4 |
| MS.gene74353.t1 | AT1G14930 | 30.189 | 159 | 94 | 5 | 1 | 151 | 1 | 150 | 2.32e-14 | 66.6 |
| MS.gene74353.t1 | AT1G35310 | 26.950 | 141 | 100 | 3 | 13 | 152 | 12 | 150 | 3.12e-14 | 66.2 |
| MS.gene74353.t1 | AT4G14060 | 29.605 | 152 | 104 | 3 | 1 | 151 | 1 | 150 | 5.36e-14 | 65.9 |
| MS.gene74353.t1 | AT2G01530 | 28.947 | 152 | 105 | 3 | 1 | 151 | 1 | 150 | 2.01e-13 | 64.3 |
| MS.gene74353.t1 | AT1G30990 | 29.630 | 135 | 92 | 3 | 1 | 134 | 1 | 133 | 8.38e-12 | 60.1 |
| MS.gene74353.t1 | AT1G14940 | 28.000 | 150 | 105 | 3 | 1 | 149 | 1 | 148 | 1.88e-11 | 58.9 |
| MS.gene74353.t1 | AT1G14950 | 26.623 | 154 | 110 | 3 | 1 | 153 | 1 | 152 | 4.43e-11 | 58.2 |
Find 23 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGGCTACATGGAACATTT+TGG | 0.264766 | 8.4:-55681055 | MS.gene74353:CDS |
| ATGGCACTGCTGCTGCTAAA+TGG | 0.314913 | 8.4:-55681120 | MS.gene74353:CDS |
| GTCTTCACCTTCATGAAGTT+TGG | 0.318017 | 8.4:+55685924 | None:intergenic |
| GGTGAGCTCAGTACTGAAAT+TGG | 0.365883 | 8.4:-55686033 | MS.gene74353:CDS |
| AAATGTTCCATGTAGCCATT+TGG | 0.413070 | 8.4:+55681058 | None:intergenic |
| AAACACTGGACTTATGTCAT+AGG | 0.490184 | 8.4:-55685880 | MS.gene74353:intron |
| AGATATTGATGAGCACTATA+AGG | 0.500590 | 8.4:-55681179 | MS.gene74353:CDS |
| TGACCCTCCAAATGGCTACA+TGG | 0.521176 | 8.4:-55681065 | MS.gene74353:CDS |
| GAGGATATTGACCCTCCAAA+TGG | 0.540200 | 8.4:-55681073 | MS.gene74353:CDS |
| TGTTCCATGTAGCCATTTGG+AGG | 0.542543 | 8.4:+55681061 | None:intergenic |
| AACACTTATAAGTTCTTCGG+TGG | 0.555536 | 8.4:-55681202 | MS.gene74353:CDS |
| TATGATGAACTCTTTCACAA+AGG | 0.564152 | 8.4:+55685947 | None:intergenic |
| AACTTCATGAAGGTGAAGAC+TGG | 0.571497 | 8.4:-55685921 | MS.gene74353:CDS |
| GAAGTAATTGATAAGAGTGA+TGG | 0.579637 | 8.4:-55681139 | MS.gene74353:CDS |
| ATAATTCATAACAGATGGCA+AGG | 0.593174 | 8.4:-55681275 | MS.gene74353:intron |
| CATCATACCAAACTTCATGA+AGG | 0.595182 | 8.4:-55685931 | MS.gene74353:CDS |
| TATTGATGCTTATCTAGCCA+AGG | 0.607429 | 8.4:-55681017 | MS.gene74353:CDS |
| GTTCCATGTAGCCATTTGGA+GGG | 0.622662 | 8.4:+55681062 | None:intergenic |
| ACAGTGATTCAGTTAAACAC+TGG | 0.626084 | 8.4:-55685894 | MS.gene74353:CDS |
| CAGATTGTAGAACTTGTCAG+AGG | 0.636689 | 8.4:+55685999 | None:intergenic |
| TGAATATGAAAAGATCAATG+AGG | 0.646793 | 8.4:-55681092 | MS.gene74353:CDS |
| AGATTGTAGAACTTGTCAGA+GGG | 0.675294 | 8.4:+55686000 | None:intergenic |
| TTCTAAGAAATGGTGCTCTG+TGG | 0.703436 | 8.4:-55686054 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTGTCAAAAAAAAAA+GGG | + | chr8.4:55685325-55685344 | None:intergenic | 10.0% |
| !! | TTATATTTGTCAAAAAAAAA+AGG | + | chr8.4:55685326-55685345 | None:intergenic | 10.0% |
| !!! | CTTTTAGATTTTTTTATTTT+TGG | + | chr8.4:55681497-55681516 | None:intergenic | 10.0% |
| !!! | TTATTATTCAATTTTTTGTT+TGG | - | chr8.4:55685374-55685393 | MS.gene74353:intron | 10.0% |
| !! | AGTAAAATAATAAGATGATT+TGG | + | chr8.4:55681223-55681242 | None:intergenic | 15.0% |
| !! | ATATACATTGATGAATAATT+TGG | + | chr8.4:55683344-55683363 | None:intergenic | 15.0% |
| !! | ATATATAGATAGATAGATTA+GGG | - | chr8.4:55685018-55685037 | MS.gene74353:intron | 15.0% |
| !! | TATAGATAGATTAAACAAAT+TGG | - | chr8.4:55684672-55684691 | MS.gene74353:intron | 15.0% |
| !! | TATATATAGATAGATAGATT+AGG | - | chr8.4:55685017-55685036 | MS.gene74353:intron | 15.0% |
| !!! | AAATATTTTAAGGTAAACAA+CGG | + | chr8.4:55685356-55685375 | None:intergenic | 15.0% |
| !!! | AAATGTTGATCATTTTTAAT+TGG | - | chr8.4:55681288-55681307 | MS.gene74353:intron | 15.0% |
| !!! | AATCATCTTATTATTTTACT+TGG | - | chr8.4:55681223-55681242 | MS.gene74353:CDS | 15.0% |
| !!! | GATTCATATTTTTTTTTGAA+TGG | + | chr8.4:55685239-55685258 | None:intergenic | 15.0% |
| !!! | TAAAACAATATGACTTTTTT+AGG | - | chr8.4:55682519-55682538 | MS.gene74353:intron | 15.0% |
| !!! | TTAGCAAGTTTTATTTTTTT+TGG | - | chr8.4:55681550-55681569 | MS.gene74353:intron | 15.0% |
| !!! | TTATTACTTATCATGTTTTT+TGG | + | chr8.4:55683317-55683336 | None:intergenic | 15.0% |
| !! | AAAAACACTTATAAGTTCTT+CGG | - | chr8.4:55685840-55685859 | MS.gene74353:intron | 20.0% |
| !! | AAACAGTAAATTTAAGCATT+AGG | - | chr8.4:55683773-55683792 | MS.gene74353:intron | 20.0% |
| !! | AAATTTAAGCATTAGGATTT+AGG | - | chr8.4:55685051-55685070 | MS.gene74353:intron | 20.0% |
| !! | AACAGTAAATTTAAGCATTA+GGG | - | chr8.4:55683774-55683793 | MS.gene74353:intron | 20.0% |
| !! | AATAGATTAACGATTTAGTT+AGG | - | chr8.4:55683531-55683550 | MS.gene74353:intron | 20.0% |
| !! | AGGTTATTTGTAGAAAAAAA+AGG | - | chr8.4:55685663-55685682 | MS.gene74353:intron | 20.0% |
| !! | ATAGATTAACGATTTAGTTA+GGG | - | chr8.4:55683532-55683551 | MS.gene74353:intron | 20.0% |
| !! | GAAATAACAAAATAAGCTAT+TGG | + | chr8.4:55682122-55682141 | None:intergenic | 20.0% |
| !! | TAGAAAAATTAGGGTTAATA+GGG | - | chr8.4:55684421-55684440 | MS.gene74353:intron | 20.0% |
| !! | TATATAGATAGATAAGCTTT+CGG | - | chr8.4:55683491-55683510 | MS.gene74353:intron | 20.0% |
| !! | TTAAAATTAGGGCTAAAATA+AGG | - | chr8.4:55683803-55683822 | MS.gene74353:intron | 20.0% |
| !! | TTAGAAAAATTAGGGTTAAT+AGG | - | chr8.4:55684420-55684439 | MS.gene74353:intron | 20.0% |
| !!! | AAATAATAAGATGATTTGGT+TGG | + | chr8.4:55681219-55681238 | None:intergenic | 20.0% |
| !!! | AATTTTTCTAAAACCCTAAT+GGG | + | chr8.4:55684411-55684430 | None:intergenic | 20.0% |
| !!! | ATGTTTTCTTATCCAAAAAA+GGG | + | chr8.4:55683083-55683102 | None:intergenic | 20.0% |
| !!! | ATTAGGGTTTTAGAAAAATT+AGG | - | chr8.4:55684411-55684430 | MS.gene74353:intron | 20.0% |
| !!! | TAATTTTTCTAAAACCCTAA+TGG | + | chr8.4:55684412-55684431 | None:intergenic | 20.0% |
| !!! | TAGGATTTAGGTTAAAATTA+GGG | - | chr8.4:55685063-55685082 | MS.gene74353:intron | 20.0% |
| !!! | TTAGGATTTAGGTTAAAATT+AGG | - | chr8.4:55685062-55685081 | MS.gene74353:intron | 20.0% |
| !!! | TTAGGGTTTTAGAAAAATTA+GGG | - | chr8.4:55684412-55684431 | MS.gene74353:intron | 20.0% |
| !!! | TTTTATTTGAATGTTTGCTT+TGG | - | chr8.4:55681371-55681390 | MS.gene74353:intron | 20.0% |
| ! | AAAAATTAGGGCTTCAAAAT+TGG | - | chr8.4:55683452-55683471 | MS.gene74353:intron | 25.0% |
| ! | AAATTTAAGCATTAGGGTTT+AGG | - | chr8.4:55683780-55683799 | MS.gene74353:intron | 25.0% |
| ! | ACAAATTGGAATTAAGCATT+AGG | - | chr8.4:55683746-55683765 | MS.gene74353:intron | 25.0% |
| ! | ATATAGATAGATAAGCTTTC+GGG | - | chr8.4:55683492-55683511 | MS.gene74353:intron | 25.0% |
| ! | CAAATTGGAATTAAGCATTA+GGG | - | chr8.4:55683747-55683766 | MS.gene74353:intron | 25.0% |
| ! | GTTAATAGGGTTAAACAAAT+TGG | - | chr8.4:55683732-55683751 | MS.gene74353:intron | 25.0% |
| ! | TACAACAGTCTAAATGAATT+CGG | - | chr8.4:55682838-55682857 | MS.gene74353:intron | 25.0% |
| ! | TACATTGATGAATAATTTGG+AGG | + | chr8.4:55683341-55683360 | None:intergenic | 25.0% |
| ! | TGAATATGAAAAGATCAATG+AGG | - | chr8.4:55685953-55685972 | MS.gene74353:CDS | 25.0% |
| ! | TGGAAAAATTAGGGTTAATA+GGG | - | chr8.4:55683719-55683738 | MS.gene74353:intron | 25.0% |
| ! | TTCACTATAAAAAATCACGT+GGG | - | chr8.4:55682483-55682502 | MS.gene74353:intron | 25.0% |
| ! | TTGGAAAAATTAGGGTTAAT+AGG | - | chr8.4:55683718-55683737 | MS.gene74353:intron | 25.0% |
| !! | AATTTTTCCAAAACCCTAAT+GGG | + | chr8.4:55683439-55683458 | None:intergenic | 25.0% |
| !! | CATGTTTTCTTATCCAAAAA+AGG | + | chr8.4:55683084-55683103 | None:intergenic | 25.0% |
| !! | TAATTTTTCCAAAACCCTAA+TGG | + | chr8.4:55683440-55683459 | None:intergenic | 25.0% |
| !! | TAGGGTTTAGGTTAAAATTA+GGG | - | chr8.4:55683792-55683811 | MS.gene74353:intron | 25.0% |
| !! | TCTAAGTTATAAGTTTTTGC+TGG | - | chr8.4:55681967-55681986 | MS.gene74353:intron | 25.0% |
| !! | TGTTTTCTTATCCAAAAAAG+GGG | + | chr8.4:55683082-55683101 | None:intergenic | 25.0% |
| !! | TTAGGGTTTAGGTTAAAATT+AGG | - | chr8.4:55683791-55683810 | MS.gene74353:intron | 25.0% |
| !! | TTGGTCTATATAAAGAGTTT+TGG | + | chr8.4:55681478-55681497 | None:intergenic | 25.0% |
| !!! | ATGAATTTTTTTAGTGGCTT+TGG | + | chr8.4:55682696-55682715 | None:intergenic | 25.0% |
| !!! | ATTAGGGTTTTGGAAAAATT+AGG | - | chr8.4:55683439-55683458 | MS.gene74353:intron | 25.0% |
| !!! | GTCTTGATGAATTTTTTTAG+TGG | + | chr8.4:55682702-55682721 | None:intergenic | 25.0% |
| !!! | GTTTTATTTTTTTTGGTGAC+CGG | - | chr8.4:55681557-55681576 | MS.gene74353:intron | 25.0% |
| !!! | TTAGGGTTTTGGAAAAATTA+GGG | - | chr8.4:55683440-55683459 | MS.gene74353:intron | 25.0% |
| !!! | TTTTATTTTTTTTGGTGACC+GGG | - | chr8.4:55681558-55681577 | MS.gene74353:intron | 25.0% |
| AAACAGTAATTGTACCCATT+AGG | - | chr8.4:55683692-55683711 | MS.gene74353:intron | 30.0% | |
| AAACAGTAATTGTAGCCATT+AGG | - | chr8.4:55683422-55683441 | MS.gene74353:intron | 30.0% | |
| AACAGTAATTGTACCCATTA+GGG | - | chr8.4:55683693-55683712 | MS.gene74353:intron | 30.0% | |
| AACAGTAATTGTAGCCATTA+GGG | - | chr8.4:55683423-55683442 | MS.gene74353:intron | 30.0% | |
| AACCATACTACTAGACTATT+AGG | + | chr8.4:55685591-55685610 | None:intergenic | 30.0% | |
| AAGCATCATTCTCATAGTTA+GGG | - | chr8.4:55683393-55683412 | MS.gene74353:intron | 30.0% | |
| AGATATTGATGAGCACTATA+AGG | - | chr8.4:55685866-55685885 | MS.gene74353:intron | 30.0% | |
| AGTATTCAACACCAATAAGT+TGG | - | chr8.4:55682624-55682643 | MS.gene74353:intron | 30.0% | |
| ATAATTCATAACAGATGGCA+AGG | - | chr8.4:55685770-55685789 | MS.gene74353:intron | 30.0% | |
| ATACTCAACAAACTATACAG+AGG | - | chr8.4:55682759-55682778 | MS.gene74353:intron | 30.0% | |
| CCATCATAATTCATAACAGA+TGG | - | chr8.4:55685765-55685784 | MS.gene74353:intron | 30.0% | |
| CCATCTGTTATGAATTATGA+TGG | + | chr8.4:55685768-55685787 | None:intergenic | 30.0% | |
| CTTCACTATAAAAAATCACG+TGG | - | chr8.4:55682482-55682501 | MS.gene74353:intron | 30.0% | |
| GAAGTAATTGATAAGAGTGA+TGG | - | chr8.4:55685906-55685925 | MS.gene74353:CDS | 30.0% | |
| GATCAAGTTTCTTTCAATTG+AGG | + | chr8.4:55682735-55682754 | None:intergenic | 30.0% | |
| TAGAGACAGACAATAACTTA+TGG | - | chr8.4:55685559-55685578 | MS.gene74353:intron | 30.0% | |
| TAGGTATGTTCCTAATCAAT+TGG | + | chr8.4:55682324-55682343 | None:intergenic | 30.0% | |
| TATGATGAACTCTTTCACAA+AGG | + | chr8.4:55681101-55681120 | None:intergenic | 30.0% | |
| TGATATATGCATACTGTTTC+AGG | + | chr8.4:55682960-55682979 | None:intergenic | 30.0% | |
| TGTTATGAATTATGATGGCA+CGG | + | chr8.4:55685763-55685782 | None:intergenic | 30.0% | |
| TTAGGGCTAAAATAAGCTTT+CGG | - | chr8.4:55683809-55683828 | MS.gene74353:intron | 30.0% | |
| TTAGGGCTAAAATAAGGTTT+CGG | - | chr8.4:55685080-55685099 | MS.gene74353:intron | 30.0% | |
| ! | AACTACAGGTTTTGCATATT+AGG | + | chr8.4:55682343-55682362 | None:intergenic | 30.0% |
| ! | ACAACTTTTCAAAATTGGCT+TGG | - | chr8.4:55684636-55684655 | MS.gene74353:intron | 30.0% |
| ! | AGGAAAAGATAGCTCTATAA+TGG | - | chr8.4:55686048-55686067 | MS.gene74353:CDS | 30.0% |
| ! | AGTTATAAGTTTTTGCTGGA+TGG | - | chr8.4:55681971-55681990 | MS.gene74353:intron | 30.0% |
| ! | GTTATAAGTTTTTGCTGGAT+GGG | - | chr8.4:55681972-55681991 | MS.gene74353:intron | 30.0% |
| ! | TAAAAGTGTGCCAATTGATT+AGG | - | chr8.4:55682311-55682330 | MS.gene74353:intron | 30.0% |
| ! | TCATTAACCTATTTGCTACA+TGG | - | chr8.4:55685610-55685629 | MS.gene74353:intron | 30.0% |
| ! | TCCAAGTTTTCAAAAACTAC+AGG | + | chr8.4:55682357-55682376 | None:intergenic | 30.0% |
| ! | TTATAAGTTTTTGCTGGATG+GGG | - | chr8.4:55681973-55681992 | MS.gene74353:intron | 30.0% |
| ! | TTATAGAGCTATCTTTTCCT+TGG | + | chr8.4:55686048-55686067 | None:intergenic | 30.0% |
| ! | TTGGGACAACTTTTCAAAAT+TGG | - | chr8.4:55684631-55684650 | MS.gene74353:intron | 30.0% |
| !! | ACCTGTAGTTTTTGAAAACT+TGG | - | chr8.4:55682353-55682372 | MS.gene74353:intron | 30.0% |
| !! | CAACTTTTCAAAATTGGCTT+GGG | - | chr8.4:55684637-55684656 | MS.gene74353:intron | 30.0% |
| !!! | GACTTTTTTAGGAGAATTGA+TGG | - | chr8.4:55682530-55682549 | MS.gene74353:intron | 30.0% |
| !!! | TTTATTTTTTTTGGTGACCG+GGG | - | chr8.4:55681559-55681578 | MS.gene74353:intron | 30.0% |
| AAACACTGGACTTATGTCAT+AGG | - | chr8.4:55681165-55681184 | MS.gene74353:CDS | 35.0% | |
| AAACAGGAATTGTAGCCATT+AGG | - | chr8.4:55683557-55683576 | MS.gene74353:intron | 35.0% | |
| AAACAGTGATTGTAGCCATT+AGG | - | chr8.4:55684124-55684143 | MS.gene74353:intron | 35.0% | |
| AAATGTTCCATGTAGCCATT+TGG | + | chr8.4:55685990-55686009 | None:intergenic | 35.0% | |
| AACACTTATAAGTTCTTCGG+TGG | - | chr8.4:55685843-55685862 | MS.gene74353:intron | 35.0% | |
| AACAGGAATTGTAGCCATTA+GGG | - | chr8.4:55683558-55683577 | MS.gene74353:intron | 35.0% | |
| AACAGTGATTGTAGCCATTA+GGG | - | chr8.4:55684125-55684144 | MS.gene74353:intron | 35.0% | |
| AATAGAGAGAAGAAGAGAGA+AGG | - | chr8.4:55685465-55685484 | MS.gene74353:intron | 35.0% | |
| ACAACTTCCAAAATTCCTAC+AGG | - | chr8.4:55683289-55683308 | MS.gene74353:intron | 35.0% | |
| ACAGTGATTCAGTTAAACAC+TGG | - | chr8.4:55681151-55681170 | MS.gene74353:CDS | 35.0% | |
| AGAGGAAACAATCAAACATG+TGG | + | chr8.4:55682069-55682088 | None:intergenic | 35.0% | |
| AGATTGTAGAACTTGTCAGA+GGG | + | chr8.4:55681048-55681067 | None:intergenic | 35.0% | |
| AGCCTAATAGTCTAGTAGTA+TGG | - | chr8.4:55685586-55685605 | MS.gene74353:intron | 35.0% | |
| ATAGTGAAGTGATGTCATCT+TGG | + | chr8.4:55682471-55682490 | None:intergenic | 35.0% | |
| ATCGAGACATGAAAAACTCA+GGG | - | chr8.4:55683240-55683259 | MS.gene74353:intron | 35.0% | |
| CAAGCATCATTCTCATAGTT+AGG | - | chr8.4:55683392-55683411 | MS.gene74353:intron | 35.0% | |
| CAAGCTGAAAAACAGTGATA+TGG | - | chr8.4:55682861-55682880 | MS.gene74353:intron | 35.0% | |
| CATCATACCAAACTTCATGA+AGG | - | chr8.4:55681114-55681133 | MS.gene74353:CDS | 35.0% | |
| CGATTTAGTTAGGGTAAAAC+AGG | - | chr8.4:55683541-55683560 | MS.gene74353:intron | 35.0% | |
| GAAGTCAAGTCATGATAGTT+TGG | + | chr8.4:55683060-55683079 | None:intergenic | 35.0% | |
| GACTTACACCATTACAATGT+GGG | - | chr8.4:55682652-55682671 | MS.gene74353:intron | 35.0% | |
| GTATAGAGAGTGAACTGAAT+TGG | + | chr8.4:55682097-55682116 | None:intergenic | 35.0% | |
| GTTATGAATTATGATGGCAC+GGG | + | chr8.4:55685762-55685781 | None:intergenic | 35.0% | |
| TAGGGCTAAAATAAGCTTTC+GGG | - | chr8.4:55683810-55683829 | MS.gene74353:intron | 35.0% | |
| TAGGGCTAAAATAAGGTTTC+GGG | - | chr8.4:55685081-55685100 | MS.gene74353:intron | 35.0% | |
| TATCGAGACATGAAAAACTC+AGG | - | chr8.4:55683239-55683258 | MS.gene74353:intron | 35.0% | |
| TATTGATGCTTATCTAGCCA+AGG | - | chr8.4:55686028-55686047 | MS.gene74353:CDS | 35.0% | |
| TGCTGTATTGTATCTTCAGT+GGG | + | chr8.4:55682929-55682948 | None:intergenic | 35.0% | |
| TGGCTTTCACACTCTTATAA+GGG | + | chr8.4:55682443-55682462 | None:intergenic | 35.0% | |
| TTGCTGTATTGTATCTTCAG+TGG | + | chr8.4:55682930-55682949 | None:intergenic | 35.0% | |
| ! | AATGGCTACATGGAACATTT+TGG | - | chr8.4:55685990-55686009 | MS.gene74353:CDS | 35.0% |
| ! | AATTGTACCCATTAGGGTTT+TGG | - | chr8.4:55683699-55683718 | MS.gene74353:intron | 35.0% |
| ! | AATTGTAGCCATTAGGGTTT+TGG | - | chr8.4:55683429-55683448 | MS.gene74353:intron | 35.0% |
| ! | AGACTGTTGTATTTTGTGAG+AGG | + | chr8.4:55682829-55682848 | None:intergenic | 35.0% |
| ! | AGTTAGGGTAAAACAGGTTT+TGG | - | chr8.4:55683865-55683884 | MS.gene74353:intron | 35.0% |
| ! | CTCTTTTTCCCACATTGTAA+TGG | + | chr8.4:55682663-55682682 | None:intergenic | 35.0% |
| ! | TAACATTTTGCCTATGTAGG+TGG | + | chr8.4:55681455-55681474 | None:intergenic | 35.0% |
| ! | TGCATACTGTTTCAGGATTT+TGG | + | chr8.4:55682953-55682972 | None:intergenic | 35.0% |
| ! | TGGTAACATTTTGCCTATGT+AGG | + | chr8.4:55681458-55681477 | None:intergenic | 35.0% |
| !! | TTTGGTTCCTGTAGGAATTT+TGG | + | chr8.4:55683299-55683318 | None:intergenic | 35.0% |
| !!! | GTTTTGGTTGTGATATGTCA+GGG | - | chr8.4:55683179-55683198 | MS.gene74353:intron | 35.0% |
| !!! | TCATGTTTTTTGGTTCCTGT+AGG | + | chr8.4:55683307-55683326 | None:intergenic | 35.0% |
| AACCAAAACCTGGCATAATG+TGG | + | chr8.4:55683168-55683187 | None:intergenic | 40.0% | |
| AACTTCATGAAGGTGAAGAC+TGG | - | chr8.4:55681124-55681143 | MS.gene74353:CDS | 40.0% | |
| AAGGAGAGGAAGAGAGAATA+GGG | - | chr8.4:55685484-55685503 | MS.gene74353:intron | 40.0% | |
| ACACAAAAGACCACCTACAT+AGG | - | chr8.4:55681442-55681461 | MS.gene74353:intron | 40.0% | |
| CAGATTGTAGAACTTGTCAG+AGG | + | chr8.4:55681049-55681068 | None:intergenic | 40.0% | |
| GACATATCACAACCAAAACC+TGG | + | chr8.4:55683178-55683197 | None:intergenic | 40.0% | |
| GCATGAGTTGCACAGTTATA+AGG | - | chr8.4:55682801-55682820 | MS.gene74353:intron | 40.0% | |
| GCTGTATTGTATCTTCAGTG+GGG | + | chr8.4:55682928-55682947 | None:intergenic | 40.0% | |
| GGAAACAATCAAACATGTGG+AGG | + | chr8.4:55682066-55682085 | None:intergenic | 40.0% | |
| GGACTTACACCATTACAATG+TGG | - | chr8.4:55682651-55682670 | MS.gene74353:intron | 40.0% | |
| GTCTTCACCTTCATGAAGTT+TGG | + | chr8.4:55681124-55681143 | None:intergenic | 40.0% | |
| GTGACATAAACACACTTCAG+TGG | - | chr8.4:55682247-55682266 | MS.gene74353:intron | 40.0% | |
| GTGGCTTTCACACTCTTATA+AGG | + | chr8.4:55682444-55682463 | None:intergenic | 40.0% | |
| TAAGTCCGTGACCAACTTAT+TGG | + | chr8.4:55682638-55682657 | None:intergenic | 40.0% | |
| TCGAAGACAGGCTAAATCAA+AGG | - | chr8.4:55683026-55683045 | MS.gene74353:intron | 40.0% | |
| TGAACTGAATTGGATCACAG+AGG | + | chr8.4:55682087-55682106 | None:intergenic | 40.0% | |
| TGGATGTCCATGTAGCAAAT+AGG | + | chr8.4:55685620-55685639 | None:intergenic | 40.0% | |
| TTAGGGCTTCAAAATTGGCT+TGG | - | chr8.4:55683457-55683476 | MS.gene74353:intron | 40.0% | |
| TTAGTTGACCACATTATGCC+AGG | - | chr8.4:55683157-55683176 | MS.gene74353:intron | 40.0% | |
| ! | ACACTTTTGCGACAAGCTAT+TGG | + | chr8.4:55682159-55682178 | None:intergenic | 40.0% |
| ! | GATTGTAGCCATTAGGGTTT+TGG | - | chr8.4:55684131-55684150 | MS.gene74353:intron | 40.0% |
| ! | TAGGGCTTCAAAATTGGCTT+GGG | - | chr8.4:55683458-55683477 | MS.gene74353:intron | 40.0% |
| ! | TGAGCTTAACTCAGTTGGTA+GGG | + | chr8.4:55681595-55681614 | None:intergenic | 40.0% |
| ! | TTTTTGCTGGATGGGGTAAT+AGG | - | chr8.4:55681980-55681999 | MS.gene74353:intron | 40.0% |
| !! | CAACACCAATAAGTTGGTCA+CGG | - | chr8.4:55682630-55682649 | MS.gene74353:intron | 40.0% |
| !!! | GGTTTTGGTTGTGATATGTC+AGG | - | chr8.4:55683178-55683197 | MS.gene74353:intron | 40.0% |
| !!! | TGACTTGACTTCCCCTTTTT+TGG | - | chr8.4:55683068-55683087 | MS.gene74353:intron | 40.0% |
| AACAACTCCAACTCGAAGAC+AGG | - | chr8.4:55683014-55683033 | MS.gene74353:intron | 45.0% | |
| AGAGAAGAAGAGAGAAGGAG+AGG | - | chr8.4:55685470-55685489 | MS.gene74353:intron | 45.0% | |
| CCAACTGAGTTAAGCTCACA+AGG | - | chr8.4:55681597-55681616 | MS.gene74353:intron | 45.0% | |
| CCTTGTGAGCTTAACTCAGT+TGG | + | chr8.4:55681600-55681619 | None:intergenic | 45.0% | |
| GAAGGAGAGGAAGAGAGAAT+AGG | - | chr8.4:55685483-55685502 | MS.gene74353:intron | 45.0% | |
| GAGGATATTGACCCTCCAAA+TGG | - | chr8.4:55685972-55685991 | MS.gene74353:CDS | 45.0% | |
| GATTTAGCCTGTCTTCGAGT+TGG | + | chr8.4:55683024-55683043 | None:intergenic | 45.0% | |
| GTGAGCTTAACTCAGTTGGT+AGG | + | chr8.4:55681596-55681615 | None:intergenic | 45.0% | |
| GTGATGTCATCTTGGATCAG+TGG | + | chr8.4:55682463-55682482 | None:intergenic | 45.0% | |
| GTTCCATGTAGCCATTTGGA+GGG | + | chr8.4:55685986-55686005 | None:intergenic | 45.0% | |
| TGTTCCATGTAGCCATTTGG+AGG | + | chr8.4:55685987-55686006 | None:intergenic | 45.0% | |
| ! | CTTGTCGCAAAAGTGTGTCT+AGG | - | chr8.4:55682163-55682182 | MS.gene74353:intron | 45.0% |
| ! | GACCACATTATGCCAGGTTT+TGG | - | chr8.4:55683163-55683182 | MS.gene74353:intron | 45.0% |
| ! | GGTGAGCTCAGTACTGAAAT+TGG | - | chr8.4:55681012-55681031 | MS.gene74353:CDS | 45.0% |
| !! | ATAAAAAATTATGAATTATT+TGG | - | chr8.4:55685270-55685289 | MS.gene74353:intron | 5.0% |
| !! | ATAATATTCATAAAAATAAT+AGG | - | chr8.4:55685643-55685662 | MS.gene74353:intron | 5.0% |
| !! | TAAAAAATTATGAATTATTT+GGG | - | chr8.4:55685271-55685290 | MS.gene74353:intron | 5.0% |
| !!! | ATTGAATAATAAATATTTTA+AGG | + | chr8.4:55685366-55685385 | None:intergenic | 5.0% |
| !!! | ATTTTTATGAATATTATAAA+TGG | + | chr8.4:55685640-55685659 | None:intergenic | 5.0% |
| ATGGCACTGCTGCTGCTAAA+TGG | - | chr8.4:55685925-55685944 | MS.gene74353:CDS | 50.0% | |
| GGTAGGGACAATGTAAACCC+CGG | + | chr8.4:55681579-55681598 | None:intergenic | 50.0% | |
| GTGCAACTCATGCTTCTCTG+TGG | + | chr8.4:55682794-55682813 | None:intergenic | 50.0% | |
| TGACCCTCCAAATGGCTACA+TGG | - | chr8.4:55685980-55685999 | MS.gene74353:CDS | 50.0% | |
| ! | TTTTCACCCGTGCTATCGCA+CGG | - | chr8.4:55681770-55681789 | MS.gene74353:intron | 50.0% |
| !! | AAATCACGTGGGAGTGCTCT+TGG | - | chr8.4:55682494-55682513 | MS.gene74353:intron | 50.0% |
| ATCAGACCCGTGCGATAGCA+CGG | + | chr8.4:55681780-55681799 | None:intergenic | 55.0% | |
| TTTCACCCGTGCTATCGCAC+GGG | - | chr8.4:55681771-55681790 | MS.gene74353:intron | 55.0% | |
| TCAGACCCGTGCGATAGCAC+GGG | + | chr8.4:55681779-55681798 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 55681000 | 55686067 | 55681000 | ID=MS.gene74353 |
| chr8.4 | mRNA | 55681000 | 55686067 | 55681000 | ID=MS.gene74353.t1;Parent=MS.gene74353 |
| chr8.4 | exon | 55685881 | 55686067 | 55685881 | ID=MS.gene74353.t1.exon1;Parent=MS.gene74353.t1 |
| chr8.4 | CDS | 55685881 | 55686067 | 55685881 | ID=cds.MS.gene74353.t1;Parent=MS.gene74353.t1 |
| chr8.4 | exon | 55681000 | 55681283 | 55681000 | ID=MS.gene74353.t1.exon2;Parent=MS.gene74353.t1 |
| chr8.4 | CDS | 55681000 | 55681283 | 55681000 | ID=cds.MS.gene74353.t1;Parent=MS.gene74353.t1 |
| Gene Sequence |
| Protein sequence |
