Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74344.t1 | XP_013445245.1 | 90.4 | 156 | 15 | 0 | 1 | 156 | 1 | 156 | 9.50E-79 | 302.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74344.t1 | Q9SSK5 | 36.6 | 153 | 93 | 4 | 3 | 152 | 7 | 158 | 1.1e-19 | 97.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74344.t1 | A0A072TPY0 | 90.4 | 156 | 15 | 0 | 1 | 156 | 1 | 156 | 6.9e-79 | 302.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74344.t1 | MTR_8g045665 | 90.385 | 156 | 15 | 0 | 1 | 156 | 1 | 156 | 8.52e-104 | 294 |
| MS.gene74344.t1 | MTR_8g045695 | 91.026 | 156 | 14 | 0 | 1 | 156 | 1 | 156 | 9.61e-104 | 293 |
| MS.gene74344.t1 | MTR_8g045640 | 86.538 | 156 | 21 | 0 | 1 | 156 | 1 | 156 | 1.66e-98 | 280 |
| MS.gene74344.t1 | MTR_8g045735 | 85.161 | 155 | 23 | 0 | 1 | 155 | 1 | 155 | 2.26e-98 | 280 |
| MS.gene74344.t1 | MTR_8g045560 | 85.256 | 156 | 23 | 0 | 1 | 156 | 1 | 156 | 3.82e-97 | 277 |
| MS.gene74344.t1 | MTR_8g045520 | 77.070 | 157 | 35 | 1 | 1 | 156 | 1 | 157 | 2.96e-86 | 249 |
| MS.gene74344.t1 | MTR_8g045400 | 71.975 | 157 | 42 | 2 | 1 | 156 | 1 | 156 | 3.15e-80 | 234 |
| MS.gene74344.t1 | MTR_8g045490 | 71.895 | 153 | 42 | 1 | 1 | 152 | 1 | 153 | 1.38e-79 | 233 |
| MS.gene74344.t1 | MTR_8g045570 | 71.053 | 152 | 43 | 1 | 1 | 151 | 1 | 152 | 6.62e-78 | 228 |
| MS.gene74344.t1 | MTR_8g045555 | 68.421 | 152 | 47 | 1 | 1 | 151 | 1 | 152 | 8.22e-76 | 223 |
| MS.gene74344.t1 | MTR_8g045300 | 65.806 | 155 | 52 | 1 | 1 | 154 | 1 | 155 | 4.96e-74 | 218 |
| MS.gene74344.t1 | MTR_1g030810 | 43.137 | 153 | 83 | 3 | 1 | 150 | 1 | 152 | 3.00e-38 | 127 |
| MS.gene74344.t1 | MTR_1g030820 | 39.869 | 153 | 88 | 3 | 1 | 150 | 1 | 152 | 3.96e-37 | 125 |
| MS.gene74344.t1 | MTR_1g030840 | 39.744 | 156 | 85 | 5 | 1 | 148 | 1 | 155 | 9.57e-29 | 103 |
| MS.gene74344.t1 | MTR_8g012550 | 32.667 | 150 | 97 | 4 | 6 | 153 | 8 | 155 | 8.94e-26 | 96.3 |
| MS.gene74344.t1 | MTR_1g031640 | 38.514 | 148 | 81 | 6 | 7 | 151 | 7 | 147 | 8.76e-22 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74344.t1 | AT5G28010 | 34.641 | 153 | 96 | 4 | 3 | 152 | 15 | 166 | 4.76e-25 | 94.7 |
| MS.gene74344.t1 | AT5G28010 | 34.641 | 153 | 96 | 4 | 3 | 152 | 15 | 166 | 4.76e-25 | 94.7 |
| MS.gene74344.t1 | AT1G70890 | 36.601 | 153 | 93 | 4 | 3 | 152 | 7 | 158 | 4.58e-24 | 92.0 |
| MS.gene74344.t1 | AT1G70840 | 34.641 | 153 | 96 | 4 | 3 | 152 | 20 | 171 | 1.11e-23 | 91.3 |
| MS.gene74344.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 22 | 173 | 6.15e-23 | 89.4 |
| MS.gene74344.t1 | AT1G70830 | 35.065 | 154 | 96 | 4 | 3 | 153 | 22 | 174 | 7.78e-23 | 89.7 |
| MS.gene74344.t1 | AT5G28000 | 33.333 | 153 | 98 | 4 | 3 | 152 | 13 | 164 | 5.25e-22 | 86.7 |
| MS.gene74344.t1 | AT1G70830 | 35.065 | 154 | 96 | 4 | 3 | 153 | 22 | 174 | 5.42e-22 | 89.0 |
| MS.gene74344.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 137 | 288 | 7.68e-22 | 89.0 |
| MS.gene74344.t1 | AT1G70830 | 32.990 | 97 | 63 | 2 | 59 | 153 | 31 | 127 | 1.36e-11 | 61.2 |
| MS.gene74344.t1 | AT1G70830 | 35.065 | 154 | 96 | 4 | 3 | 153 | 22 | 174 | 9.49e-22 | 89.7 |
| MS.gene74344.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 184 | 335 | 2.36e-21 | 88.6 |
| MS.gene74344.t1 | AT1G70850 | 36.364 | 143 | 87 | 4 | 13 | 152 | 175 | 316 | 5.78e-21 | 87.0 |
| MS.gene74344.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 2.09e-20 | 85.9 |
| MS.gene74344.t1 | AT1G70850 | 36.364 | 143 | 87 | 4 | 13 | 152 | 175 | 316 | 5.78e-21 | 87.0 |
| MS.gene74344.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 2.09e-20 | 85.9 |
| MS.gene74344.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 1.05e-20 | 85.1 |
| MS.gene74344.t1 | AT4G23670 | 32.680 | 153 | 99 | 4 | 1 | 151 | 1 | 151 | 1.94e-20 | 82.4 |
| MS.gene74344.t1 | AT1G70870 | 43.750 | 96 | 52 | 2 | 56 | 150 | 44 | 138 | 6.80e-20 | 80.5 |
| MS.gene74344.t1 | AT1G14930 | 28.571 | 154 | 106 | 4 | 1 | 152 | 1 | 152 | 1.39e-18 | 77.8 |
| MS.gene74344.t1 | AT1G23120 | 30.000 | 150 | 99 | 4 | 1 | 149 | 1 | 145 | 2.45e-18 | 77.0 |
| MS.gene74344.t1 | AT1G23120 | 30.496 | 141 | 92 | 4 | 10 | 149 | 60 | 195 | 7.37e-18 | 77.0 |
| MS.gene74344.t1 | AT2G01520 | 28.105 | 153 | 106 | 4 | 1 | 151 | 1 | 151 | 8.33e-18 | 75.5 |
| MS.gene74344.t1 | AT1G24020 | 32.903 | 155 | 95 | 4 | 1 | 150 | 1 | 151 | 5.77e-17 | 73.6 |
| MS.gene74344.t1 | AT1G24020 | 32.903 | 155 | 95 | 4 | 1 | 150 | 1 | 151 | 5.77e-17 | 73.6 |
| MS.gene74344.t1 | AT1G23130 | 28.188 | 149 | 104 | 3 | 3 | 149 | 10 | 157 | 1.16e-16 | 72.8 |
| MS.gene74344.t1 | AT1G70880 | 30.719 | 153 | 102 | 4 | 3 | 152 | 8 | 159 | 1.30e-16 | 72.8 |
| MS.gene74344.t1 | AT1G14940 | 27.273 | 154 | 108 | 4 | 1 | 152 | 1 | 152 | 1.16e-15 | 70.1 |
| MS.gene74344.t1 | AT2G01530 | 28.105 | 153 | 106 | 4 | 1 | 151 | 1 | 151 | 1.55e-15 | 69.7 |
| MS.gene74344.t1 | AT4G14060 | 27.451 | 153 | 107 | 4 | 1 | 151 | 1 | 151 | 1.92e-15 | 69.3 |
| MS.gene74344.t1 | AT4G23680 | 27.632 | 152 | 106 | 4 | 1 | 150 | 1 | 150 | 1.94e-15 | 69.3 |
| MS.gene74344.t1 | AT1G14950 | 26.623 | 154 | 109 | 4 | 1 | 152 | 1 | 152 | 7.39e-15 | 68.2 |
| MS.gene74344.t1 | AT1G30990 | 28.477 | 151 | 103 | 5 | 1 | 149 | 1 | 148 | 7.97e-15 | 67.8 |
| MS.gene74344.t1 | AT3G26460 | 28.105 | 153 | 107 | 3 | 1 | 151 | 1 | 152 | 9.47e-14 | 65.1 |
| MS.gene74344.t1 | AT1G35310 | 28.777 | 139 | 95 | 4 | 13 | 149 | 12 | 148 | 3.51e-13 | 63.5 |
| MS.gene74344.t1 | AT1G14960 | 25.161 | 155 | 112 | 4 | 1 | 153 | 1 | 153 | 1.26e-12 | 62.0 |
| MS.gene74344.t1 | AT3G26450 | 25.325 | 154 | 110 | 5 | 1 | 151 | 1 | 152 | 2.27e-11 | 58.9 |
Find 29 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAGATATTGAAAACTATA+AGG | 0.391039 | 8.4:+55550731 | MS.gene74344:CDS |
| AAACATTGGACTTATGTCAT+AGG | 0.403651 | 8.4:+55547666 | MS.gene74344:CDS |
| CACAAACTTTGTGCACTTCG+TGG | 0.405990 | 8.4:-55547584 | None:intergenic |
| ATGGAAGTTCTGCTGTTAGA+TGG | 0.407851 | 8.4:+55550790 | MS.gene74344:CDS |
| AAGATCACTTACAAGCTGTT+TGG | 0.418393 | 8.4:+55550708 | MS.gene74344:CDS |
| ATCTTCACCTTCATGAAGCT+TGG | 0.441586 | 8.4:-55547622 | None:intergenic |
| GGGAAACTTATCACTGAACT+TGG | 0.445682 | 8.4:+55547513 | MS.gene74344:CDS |
| AGGTAGTCCATCCAGCCATT+TGG | 0.456227 | 8.4:-55550852 | None:intergenic |
| AAAAGCACTAGAGATATTGA+TGG | 0.477335 | 8.4:+55550879 | MS.gene74344:CDS |
| ATCACTTACAAGCTGTTTGG+TGG | 0.478540 | 8.4:+55550711 | MS.gene74344:CDS |
| TTTCCAAATATGGTGCTCGC+TGG | 0.484997 | 8.4:+55547492 | None:intergenic |
| AGCTTCATGAAGGTGAAGAT+TGG | 0.494334 | 8.4:+55547625 | MS.gene74344:CDS |
| TTCCAAATATGGTGCTCGCT+GGG | 0.503897 | 8.4:+55547493 | None:intergenic |
| GAGGATATTGATACTCCAAA+TGG | 0.508694 | 8.4:+55550837 | MS.gene74344:CDS |
| AGATTGGCATCACAATGATT+CGG | 0.515908 | 8.4:+55547641 | MS.gene74344:CDS |
| AGCAGAACTTCCATCAGCCT+TGG | 0.534921 | 8.4:-55550781 | None:intergenic |
| ACAATGATTCGGTTAAACAT+TGG | 0.540448 | 8.4:+55547652 | MS.gene74344:CDS |
| ATATTGATACTCCAAATGGC+TGG | 0.546067 | 8.4:+55550841 | MS.gene74344:CDS |
| GAACTTGGGATCAAATCACC+TGG | 0.553911 | 8.4:+55547528 | MS.gene74344:CDS |
| TGATACTCCAAATGGCTGGA+TGG | 0.568648 | 8.4:+55550845 | MS.gene74344:CDS |
| AACTTGGGATCAAATCACCT+GGG | 0.581574 | 8.4:+55547529 | MS.gene74344:CDS |
| CATCATGCCAAGCTTCATGA+AGG | 0.583004 | 8.4:+55547615 | MS.gene74344:CDS |
| GAAGTGCTTACCAAGGCTGA+TGG | 0.599893 | 8.4:+55550771 | MS.gene74344:CDS |
| GGAAACTTATCACTGAACTT+GGG | 0.624297 | 8.4:+55547514 | MS.gene74344:CDS |
| TGAATATGAGAAGAACAATG+AGG | 0.650125 | 8.4:+55550818 | MS.gene74344:CDS |
| GGTACACACATGCAATGAGA+AGG | 0.678141 | 8.4:+55550659 | MS.gene74344:CDS |
| GGACATAACAACAGACGGTG+AGG | 0.687195 | 8.4:+55550638 | MS.gene74344:intron |
| CATCTTAGAAGTGCTTACCA+AGG | 0.696732 | 8.4:+55550764 | MS.gene74344:CDS |
| ACTTGGGATCAAATCACCTG+GGG | 0.705917 | 8.4:+55547530 | MS.gene74344:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTATAATATTTAAAAA+GGG | + | chr8.4:55548239-55548258 | MS.gene74344:intron | 0.0% |
| !! | TTAATTTATAATATTTAAAA+AGG | + | chr8.4:55548238-55548257 | MS.gene74344:intron | 0.0% |
| !!! | TTTTATATAATTTTAATTTT+AGG | - | chr8.4:55548401-55548420 | None:intergenic | 0.0% |
| !! | AATAAAATCGATAAAATATT+TGG | + | chr8.4:55549419-55549438 | MS.gene74344:intron | 10.0% |
| !! | ATAAAAAAAAGATATTGATA+AGG | - | chr8.4:55550281-55550300 | None:intergenic | 10.0% |
| !! | ATTATAAATTAAGTGATTAT+AGG | - | chr8.4:55549167-55549186 | None:intergenic | 10.0% |
| !!! | CGTATTTAATATTTTTTTAA+AGG | + | chr8.4:55550577-55550596 | MS.gene74344:intron | 10.0% |
| !! | AATAATATAGATTAAGTTAG+TGG | - | chr8.4:55549788-55549807 | None:intergenic | 15.0% |
| !! | ATGTTATTGTATAAATAATG+GGG | - | chr8.4:55547781-55547800 | None:intergenic | 15.0% |
| !! | GATGTTATTGTATAAATAAT+GGG | - | chr8.4:55547782-55547801 | None:intergenic | 15.0% |
| !! | TAGAAACACAATTATTATTA+GGG | - | chr8.4:55548124-55548143 | None:intergenic | 15.0% |
| !! | TGATGTTATTGTATAAATAA+TGG | - | chr8.4:55547783-55547802 | None:intergenic | 15.0% |
| !! | TTAGAAACACAATTATTATT+AGG | - | chr8.4:55548125-55548144 | None:intergenic | 15.0% |
| !!! | TGTATATGGTTTTATTTTTA+AGG | - | chr8.4:55550349-55550368 | None:intergenic | 15.0% |
| !!! | TTAAATAGTCTTATACATTA+GGG | - | chr8.4:55550314-55550333 | None:intergenic | 15.0% |
| !!! | TTTAAAAAAACACTTTCTTT+TGG | - | chr8.4:55548891-55548910 | None:intergenic | 15.0% |
| !!! | TTTAAATAGTCTTATACATT+AGG | - | chr8.4:55550315-55550334 | None:intergenic | 15.0% |
| !! | AAATTAGTTGTACTAGAAAT+GGG | - | chr8.4:55550408-55550427 | None:intergenic | 20.0% |
| !! | ATAATATTTAAAAAGGGAAG+AGG | + | chr8.4:55548245-55548264 | MS.gene74344:intron | 20.0% |
| !! | ATGCTTGTTCAATAAAATTA+GGG | + | chr8.4:55549330-55549349 | MS.gene74344:intron | 20.0% |
| !! | TGCATATAAGAATTTGTATA+TGG | - | chr8.4:55550363-55550382 | None:intergenic | 20.0% |
| !! | TTAAACATAACTCTTCATTA+TGG | - | chr8.4:55548520-55548539 | None:intergenic | 20.0% |
| !! | TTATGTCATAGGTAATAATA+AGG | + | chr8.4:55547677-55547696 | MS.gene74344:intron | 20.0% |
| !!! | AACTAGTTTATTTTCTAGAT+AGG | - | chr8.4:55548655-55548674 | None:intergenic | 20.0% |
| !!! | AAGGTAAACTCTTTTTTTTT+TGG | - | chr8.4:55549018-55549037 | None:intergenic | 20.0% |
| !!! | CAAAAATATTTGGTTTTTTG+CGG | - | chr8.4:55549595-55549614 | None:intergenic | 20.0% |
| !!! | TAATATTTACTTTTACGGTT+TGG | - | chr8.4:55549691-55549710 | None:intergenic | 20.0% |
| !!! | TATTAAATACGTTTTCTCAA+AGG | - | chr8.4:55550568-55550587 | None:intergenic | 20.0% |
| !!! | TTATCGATTTTATTTCAGAT+TGG | - | chr8.4:55549413-55549432 | None:intergenic | 20.0% |
| !!! | TTTGAAATAAAAATCACATG+TGG | - | chr8.4:55549926-55549945 | None:intergenic | 20.0% |
| !!! | TTTTGCAGTTTTCAATTTTT+TGG | + | chr8.4:55549444-55549463 | MS.gene74344:intron | 20.0% |
| ! | AAACAATAAAACTACCAAAC+CGG | - | chr8.4:55549277-55549296 | None:intergenic | 25.0% |
| ! | AAACTATTCAAACTCAACTA+GGG | - | chr8.4:55549991-55550010 | None:intergenic | 25.0% |
| ! | ATAATATTTAGAAAAGGGAG+AGG | + | chr8.4:55549182-55549201 | MS.gene74344:intron | 25.0% |
| ! | CAAACACATCCAAAAATATT+TGG | - | chr8.4:55549605-55549624 | None:intergenic | 25.0% |
| ! | CAAATTAGTTGTACTAGAAA+TGG | - | chr8.4:55550409-55550428 | None:intergenic | 25.0% |
| ! | CATGCTTGTTCAATAAAATT+AGG | + | chr8.4:55549329-55549348 | MS.gene74344:intron | 25.0% |
| ! | GATACTTAAAAACGTAAACT+CGG | + | chr8.4:55549055-55549074 | MS.gene74344:intron | 25.0% |
| ! | TAACACGTGTTAATTAAACT+CGG | - | chr8.4:55548962-55548981 | None:intergenic | 25.0% |
| ! | TAATAATGTTTGCAACATCT+TGG | - | chr8.4:55547987-55548006 | None:intergenic | 25.0% |
| ! | TGGAGATATTGAAAACTATA+AGG | + | chr8.4:55550731-55550750 | MS.gene74344:CDS | 25.0% |
| ! | TTAATTAACACGTGTTAACT+CGG | + | chr8.4:55548965-55548984 | MS.gene74344:intron | 25.0% |
| !! | AGTGTGATTTTATAACTTCA+AGG | - | chr8.4:55550107-55550126 | None:intergenic | 25.0% |
| !! | CGCAAAAAACCAAATATTTT+TGG | + | chr8.4:55549593-55549612 | MS.gene74344:intron | 25.0% |
| !! | TGACTATTCTGAAAAATAGT+CGG | - | chr8.4:55549887-55549906 | None:intergenic | 25.0% |
| !! | TTTACGATTCGATTTTACAT+AGG | - | chr8.4:55548351-55548370 | None:intergenic | 25.0% |
| !! | TTTTGCGGTTTTCAATTTTT+TGG | - | chr8.4:55549580-55549599 | None:intergenic | 25.0% |
| !!! | CAAATATTTTTGGATGTGTT+TGG | + | chr8.4:55549603-55549622 | MS.gene74344:intron | 25.0% |
| !!! | GAGAGGTATATAATTTTACA+AGG | + | chr8.4:55549199-55549218 | MS.gene74344:intron | 25.0% |
| !!! | TGCTTTTTTGGATGATTTTT+TGG | - | chr8.4:55548602-55548621 | None:intergenic | 25.0% |
| !!! | TTCTTTTGGACCATTTTTTT+GGG | - | chr8.4:55548877-55548896 | None:intergenic | 25.0% |
| !!! | TTTCTTTTGGACCATTTTTT+TGG | - | chr8.4:55548878-55548897 | None:intergenic | 25.0% |
| !!! | TTTTTGGATGATTTTTTGGA+TGG | - | chr8.4:55548598-55548617 | None:intergenic | 25.0% |
| AAACATTGGACTTATGTCAT+AGG | + | chr8.4:55547666-55547685 | MS.gene74344:CDS | 30.0% | |
| AACATAACTCTTCATTATGG+TGG | - | chr8.4:55548517-55548536 | None:intergenic | 30.0% | |
| AGAAAATCGACCCAAAAAAA+TGG | + | chr8.4:55548864-55548883 | MS.gene74344:intron | 30.0% | |
| CAACATTAGAACCAAATACA+TGG | + | chr8.4:55548779-55548798 | MS.gene74344:intron | 30.0% | |
| CACCAAAAAAATTACTACCT+CGG | - | chr8.4:55550527-55550546 | None:intergenic | 30.0% | |
| CTAGTTAACAAGGTGAAATT+GGG | - | chr8.4:55549307-55549326 | None:intergenic | 30.0% | |
| GAAACTATTCAAACTCAACT+AGG | - | chr8.4:55549992-55550011 | None:intergenic | 30.0% | |
| GACATTAATTTCAGTACCTT+GGG | + | chr8.4:55548816-55548835 | MS.gene74344:intron | 30.0% | |
| GCTATTGATATTAATTGCCT+CGG | + | chr8.4:55550617-55550636 | MS.gene74344:intron | 30.0% | |
| TAAACGTAAACTCGTAAACA+CGG | + | chr8.4:55548907-55548926 | MS.gene74344:intron | 30.0% | |
| TACATAGGTAAAACAAGTTG+AGG | - | chr8.4:55548336-55548355 | None:intergenic | 30.0% | |
| TGAATATGAGAAGAACAATG+AGG | + | chr8.4:55550818-55550837 | MS.gene74344:CDS | 30.0% | |
| TGTACTAGAAATGGGTATAT+TGG | - | chr8.4:55550400-55550419 | None:intergenic | 30.0% | |
| TTATTATTAGGGAGCTTCTA+CGG | - | chr8.4:55548113-55548132 | None:intergenic | 30.0% | |
| ! | CTAGTACAACTAATTTGTCT+TGG | + | chr8.4:55550412-55550431 | MS.gene74344:intron | 30.0% |
| ! | GTAGAGAAGCACAAAATATA+TGG | - | chr8.4:55549251-55549270 | None:intergenic | 30.0% |
| ! | TGCGTTATTATGTTACTTGT+TGG | + | chr8.4:55549744-55549763 | MS.gene74344:intron | 30.0% |
| !! | AAAAGCACTAGAGATATTGA+TGG | + | chr8.4:55550879-55550898 | MS.gene74344:CDS | 30.0% |
| !! | ACAATGATTCGGTTAAACAT+TGG | + | chr8.4:55547652-55547671 | MS.gene74344:CDS | 30.0% |
| !! | ATTGATGGTCATCTTTTCAA+GGG | + | chr8.4:55550894-55550913 | MS.gene74344:CDS | 30.0% |
| !! | GGAACGATTTTATTTCAGAT+TGG | - | chr8.4:55549559-55549578 | None:intergenic | 30.0% |
| !! | GTTGTTTTGTAAAAACCGTT+AGG | + | chr8.4:55549628-55549647 | MS.gene74344:intron | 30.0% |
| !! | TATTGATGGTCATCTTTTCA+AGG | + | chr8.4:55550893-55550912 | MS.gene74344:CDS | 30.0% |
| !! | TATTTTTGTGTCAAGATGTG+AGG | - | chr8.4:55550177-55550196 | None:intergenic | 30.0% |
| !!! | AACTTGTGAACTTGCTTTTT+TGG | - | chr8.4:55548614-55548633 | None:intergenic | 30.0% |
| !!! | AGTCATGAGAATGACTTTTT+TGG | + | chr8.4:55547715-55547734 | MS.gene74344:intron | 30.0% |
| !!! | CAATTCTTTTTTTAAGCCCA+AGG | - | chr8.4:55548835-55548854 | None:intergenic | 30.0% |
| !!! | TACCGAGGTAGTAATTTTTT+TGG | + | chr8.4:55550522-55550541 | MS.gene74344:intron | 30.0% |
| !!! | TTTACTTTTACGGTTTGGTT+CGG | - | chr8.4:55549686-55549705 | None:intergenic | 30.0% |
| AAATCACATGTGGTTCAGTT+CGG | - | chr8.4:55549916-55549935 | None:intergenic | 35.0% | |
| AAGATCACTTACAAGCTGTT+TGG | + | chr8.4:55550708-55550727 | MS.gene74344:CDS | 35.0% | |
| AATAAAACTACCAAACCGGA+TGG | - | chr8.4:55549273-55549292 | None:intergenic | 35.0% | |
| ACTCTTGTAAAAAGTTACCG+AGG | + | chr8.4:55550507-55550526 | MS.gene74344:intron | 35.0% | |
| AGATTGGCATCACAATGATT+CGG | + | chr8.4:55547641-55547660 | MS.gene74344:CDS | 35.0% | |
| ATATTGATACTCCAAATGGC+TGG | + | chr8.4:55550841-55550860 | MS.gene74344:CDS | 35.0% | |
| CCAATTTCACCTTGTTAACT+AGG | + | chr8.4:55549305-55549324 | MS.gene74344:intron | 35.0% | |
| CCTAGTTAACAAGGTGAAAT+TGG | - | chr8.4:55549308-55549327 | None:intergenic | 35.0% | |
| CCTTAAGTGTTACACTTTGT+GGG | - | chr8.4:55547896-55547915 | None:intergenic | 35.0% | |
| CGACATTAATTTCAGTACCT+TGG | + | chr8.4:55548815-55548834 | MS.gene74344:intron | 35.0% | |
| CTTAAGTGTTACACTTTGTG+GGG | - | chr8.4:55547895-55547914 | None:intergenic | 35.0% | |
| GAAATTCGATCAGATCCTAA+CGG | - | chr8.4:55549646-55549665 | None:intergenic | 35.0% | |
| GAGGATATTGATACTCCAAA+TGG | + | chr8.4:55550837-55550856 | MS.gene74344:CDS | 35.0% | |
| GGAAACTTATCACTGAACTT+GGG | + | chr8.4:55547514-55547533 | MS.gene74344:CDS | 35.0% | |
| GTTGAAAACACTTTATCGTC+TGG | - | chr8.4:55548763-55548782 | None:intergenic | 35.0% | |
| TCAAAAACGTGTTAACTCGA+AGG | - | chr8.4:55549037-55549056 | None:intergenic | 35.0% | |
| ! | ACGAGTTAACACTTGATTTG+TGG | + | chr8.4:55549086-55549105 | MS.gene74344:intron | 35.0% |
| ! | ATGTTAACCCATGCTTGTTA+GGG | + | chr8.4:55549518-55549537 | MS.gene74344:intron | 35.0% |
| ! | GTTAACATGGGTTGAGTTTA+GGG | - | chr8.4:55549506-55549525 | None:intergenic | 35.0% |
| ! | TAACAAGCATGGGTTAACAT+GGG | - | chr8.4:55549518-55549537 | None:intergenic | 35.0% |
| ! | TATCTCTAGTGCTTTTGCTA+AGG | - | chr8.4:55550875-55550894 | None:intergenic | 35.0% |
| ! | TCGGTAACTTTTTACAAGAG+TGG | - | chr8.4:55550508-55550527 | None:intergenic | 35.0% |
| !! | ACACTTGATTTGTGGAAAAC+TGG | + | chr8.4:55549094-55549113 | MS.gene74344:intron | 35.0% |
| !! | ATTATAGGTTCTAAACCCAG+AGG | - | chr8.4:55549152-55549171 | None:intergenic | 35.0% |
| !! | GACTCTGATGGATTAAACTT+GGG | - | chr8.4:55549121-55549140 | None:intergenic | 35.0% |
| !! | TGACTCTGATGGATTAAACT+TGG | - | chr8.4:55549122-55549141 | None:intergenic | 35.0% |
| !! | TTATAGGTTCTAAACCCAGA+GGG | - | chr8.4:55549151-55549170 | None:intergenic | 35.0% |
| !! | TTGATGGTCATCTTTTCAAG+GGG | + | chr8.4:55550895-55550914 | MS.gene74344:CDS | 35.0% |
| AACTTGGGATCAAATCACCT+GGG | + | chr8.4:55547529-55547548 | MS.gene74344:CDS | 40.0% | |
| AGCTTCATGAAGGTGAAGAT+TGG | + | chr8.4:55547625-55547644 | MS.gene74344:CDS | 40.0% | |
| AGTTTGAAAAACTTCTCCCC+AGG | - | chr8.4:55547549-55547568 | None:intergenic | 40.0% | |
| ATCACTTACAAGCTGTTTGG+TGG | + | chr8.4:55550711-55550730 | MS.gene74344:CDS | 40.0% | |
| ATCTTCACCTTCATGAAGCT+TGG | - | chr8.4:55547625-55547644 | None:intergenic | 40.0% | |
| ATGGAAGTTCTGCTGTTAGA+TGG | + | chr8.4:55550790-55550809 | MS.gene74344:CDS | 40.0% | |
| CAAGCATGTCCTAGTTAACA+AGG | - | chr8.4:55549317-55549336 | None:intergenic | 40.0% | |
| CACTAGAGAAGACCACATTA+TGG | + | chr8.4:55548276-55548295 | MS.gene74344:intron | 40.0% | |
| CATGTTAACCCATGCTTGTT+AGG | + | chr8.4:55549517-55549536 | MS.gene74344:intron | 40.0% | |
| CCCACAAAGTGTAACACTTA+AGG | + | chr8.4:55547893-55547912 | MS.gene74344:intron | 40.0% | |
| CGAGTTGTAAAACCTTGCTT+GGG | - | chr8.4:55548305-55548324 | None:intergenic | 40.0% | |
| GCCTTAAGTGTTACACTTTG+TGG | - | chr8.4:55547897-55547916 | None:intergenic | 40.0% | |
| GGGAAACTTATCACTGAACT+TGG | + | chr8.4:55547513-55547532 | MS.gene74344:CDS | 40.0% | |
| GTGAGTTCAAGCCATGTATT+TGG | - | chr8.4:55548793-55548812 | None:intergenic | 40.0% | |
| TCGGTAAACTCGTGTAAACT+CGG | - | chr8.4:55548943-55548962 | None:intergenic | 40.0% | |
| TGAACATCCCTAACAAGCAT+GGG | - | chr8.4:55549528-55549547 | None:intergenic | 40.0% | |
| TTGAACATCCCTAACAAGCA+TGG | - | chr8.4:55549529-55549548 | None:intergenic | 40.0% | |
| ! | CTAACAAGCATGGGTTAACA+TGG | - | chr8.4:55549519-55549538 | None:intergenic | 40.0% |
| ! | GGTTAACATGGGTTGAGTTT+AGG | - | chr8.4:55549507-55549526 | None:intergenic | 40.0% |
| ! | TCGAGTTGTAAAACCTTGCT+TGG | - | chr8.4:55548306-55548325 | None:intergenic | 40.0% |
| ! | TTTTGTGCTTCTCTACCATC+CGG | + | chr8.4:55549255-55549274 | MS.gene74344:intron | 40.0% |
| !! | CATCTTAGAAGTGCTTACCA+AGG | + | chr8.4:55550764-55550783 | MS.gene74344:CDS | 40.0% |
| !! | TCATCTTTTCAAGGGGGAAA+AGG | + | chr8.4:55550902-55550921 | MS.gene74344:CDS | 40.0% |
| !! | TGATGGTCATCTTTTCAAGG+GGG | + | chr8.4:55550896-55550915 | MS.gene74344:CDS | 40.0% |
| ACATGTGGTTCAGTTCGGTT+TGG | - | chr8.4:55549911-55549930 | None:intergenic | 45.0% | |
| ACATTATGGAGTCCCAAGCA+AGG | + | chr8.4:55548290-55548309 | MS.gene74344:intron | 45.0% | |
| ACTTGGGATCAAATCACCTG+GGG | + | chr8.4:55547530-55547549 | MS.gene74344:CDS | 45.0% | |
| CACAAACTTTGTGCACTTCG+TGG | - | chr8.4:55547587-55547606 | None:intergenic | 45.0% | |
| CATCATGCCAAGCTTCATGA+AGG | + | chr8.4:55547615-55547634 | MS.gene74344:CDS | 45.0% | |
| CGGTAAACTCGTGTAAACTC+GGG | - | chr8.4:55548942-55548961 | None:intergenic | 45.0% | |
| GAACTTGGGATCAAATCACC+TGG | + | chr8.4:55547528-55547547 | MS.gene74344:CDS | 45.0% | |
| GGTACACACATGCAATGAGA+AGG | + | chr8.4:55550659-55550678 | MS.gene74344:CDS | 45.0% | |
| TGATACTCCAAATGGCTGGA+TGG | + | chr8.4:55550845-55550864 | MS.gene74344:CDS | 45.0% | |
| TTGCTTGGGACTCCATAATG+TGG | - | chr8.4:55548291-55548310 | None:intergenic | 45.0% | |
| ! | GGGGTGTTACGCTTATAACA+AGG | - | chr8.4:55547876-55547895 | None:intergenic | 45.0% |
| !! | AATTTATAATATTTAGAAAA+GGG | + | chr8.4:55549177-55549196 | MS.gene74344:intron | 5.0% |
| !! | TAATTTATAATATTTAGAAA+AGG | + | chr8.4:55549176-55549195 | MS.gene74344:intron | 5.0% |
| !!! | ATAAAAAATTTATTTTAGAT+TGG | - | chr8.4:55549371-55549390 | None:intergenic | 5.0% |
| !!! | ATTATTAATATTTACTTTTA+CGG | - | chr8.4:55549696-55549715 | None:intergenic | 5.0% |
| ACCGTCTGTTGTTATGTCCG+AGG | - | chr8.4:55550637-55550656 | None:intergenic | 50.0% | |
| AGCAGAACTTCCATCAGCCT+TGG | - | chr8.4:55550784-55550803 | None:intergenic | 50.0% | |
| AGGTAGTCCATCCAGCCATT+TGG | - | chr8.4:55550855-55550874 | None:intergenic | 50.0% | |
| CAGAGTCAGACAAACCCTCT+GGG | + | chr8.4:55549134-55549153 | MS.gene74344:intron | 50.0% | |
| GAGGGTTTGTCTGACTCTGA+TGG | - | chr8.4:55549133-55549152 | None:intergenic | 50.0% | |
| GCCTCGGACATAACAACAGA+CGG | + | chr8.4:55550633-55550652 | MS.gene74344:intron | 50.0% | |
| GGACATAACAACAGACGGTG+AGG | + | chr8.4:55550638-55550657 | MS.gene74344:intron | 50.0% | |
| TCAGAGTCAGACAAACCCTC+TGG | + | chr8.4:55549133-55549152 | MS.gene74344:intron | 50.0% | |
| TGCTTCTCTACCATCCGGTT+TGG | + | chr8.4:55549260-55549279 | MS.gene74344:intron | 50.0% | |
| ! | CAACTAGGGTGTTCGCGATT+TGG | - | chr8.4:55549977-55549996 | None:intergenic | 50.0% |
| ! | GAAGTGCTTACCAAGGCTGA+TGG | + | chr8.4:55550771-55550790 | MS.gene74344:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 55547501 | 55550935 | 55547501 | ID=MS.gene74344 |
| chr8.4 | mRNA | 55547501 | 55550935 | 55547501 | ID=MS.gene74344.t1;Parent=MS.gene74344 |
| chr8.4 | exon | 55547501 | 55547687 | 55547501 | ID=MS.gene74344.t1.exon1;Parent=MS.gene74344.t1 |
| chr8.4 | CDS | 55547501 | 55547687 | 55547501 | ID=cds.MS.gene74344.t1;Parent=MS.gene74344.t1 |
| chr8.4 | exon | 55550652 | 55550935 | 55550652 | ID=MS.gene74344.t1.exon2;Parent=MS.gene74344.t1 |
| chr8.4 | CDS | 55550652 | 55550935 | 55550652 | ID=cds.MS.gene74344.t1;Parent=MS.gene74344.t1 |
| Gene Sequence |
| Protein sequence |
