Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59862.t1 | XP_013445246.1 | 93.6 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 3.00E-80 | 307.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59862.t1 | Q941R6 | 35.3 | 153 | 95 | 4 | 3 | 152 | 20 | 171 | 7.7e-21 | 101.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59862.t1 | I3SJ62 | 93.6 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 2.1e-80 | 307.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59862.t1 | MTR_8g045695 | 93.590 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 2.51e-106 | 300 |
| MS.gene59862.t1 | MTR_8g045735 | 85.065 | 154 | 23 | 0 | 1 | 154 | 1 | 154 | 5.55e-98 | 279 |
| MS.gene59862.t1 | MTR_8g045665 | 83.974 | 156 | 25 | 0 | 1 | 156 | 1 | 156 | 7.07e-96 | 274 |
| MS.gene59862.t1 | MTR_8g045640 | 82.051 | 156 | 28 | 0 | 1 | 156 | 1 | 156 | 1.76e-92 | 265 |
| MS.gene59862.t1 | MTR_8g045560 | 80.769 | 156 | 30 | 0 | 1 | 156 | 1 | 156 | 3.26e-91 | 262 |
| MS.gene59862.t1 | MTR_8g045520 | 76.433 | 157 | 36 | 1 | 1 | 156 | 1 | 157 | 2.48e-85 | 247 |
| MS.gene59862.t1 | MTR_8g045400 | 75.159 | 157 | 37 | 2 | 1 | 156 | 1 | 156 | 5.58e-85 | 246 |
| MS.gene59862.t1 | MTR_8g045490 | 72.611 | 157 | 41 | 2 | 1 | 156 | 1 | 156 | 2.06e-81 | 237 |
| MS.gene59862.t1 | MTR_8g045555 | 70.395 | 152 | 44 | 1 | 1 | 151 | 1 | 152 | 7.79e-77 | 225 |
| MS.gene59862.t1 | MTR_8g045570 | 69.079 | 152 | 46 | 1 | 1 | 151 | 1 | 152 | 5.92e-76 | 223 |
| MS.gene59862.t1 | MTR_8g045300 | 66.667 | 156 | 51 | 1 | 1 | 155 | 1 | 156 | 7.88e-76 | 223 |
| MS.gene59862.t1 | MTR_1g030810 | 45.098 | 153 | 80 | 3 | 1 | 150 | 1 | 152 | 2.41e-40 | 133 |
| MS.gene59862.t1 | MTR_1g030820 | 39.869 | 153 | 88 | 3 | 1 | 150 | 1 | 152 | 1.54e-37 | 126 |
| MS.gene59862.t1 | MTR_1g030840 | 40.385 | 156 | 84 | 5 | 1 | 148 | 1 | 155 | 1.04e-30 | 108 |
| MS.gene59862.t1 | MTR_8g012550 | 32.667 | 150 | 97 | 4 | 6 | 153 | 8 | 155 | 4.61e-25 | 94.4 |
| MS.gene59862.t1 | MTR_1g031640 | 38.514 | 148 | 81 | 6 | 7 | 151 | 7 | 147 | 5.45e-23 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59862.t1 | AT1G70840 | 35.294 | 153 | 95 | 4 | 3 | 152 | 20 | 171 | 1.90e-25 | 95.9 |
| MS.gene59862.t1 | AT5G28010 | 35.294 | 153 | 95 | 4 | 3 | 152 | 15 | 166 | 2.08e-25 | 95.5 |
| MS.gene59862.t1 | AT5G28010 | 35.294 | 153 | 95 | 4 | 3 | 152 | 15 | 166 | 2.08e-25 | 95.5 |
| MS.gene59862.t1 | AT1G70830 | 36.601 | 153 | 93 | 4 | 3 | 152 | 22 | 173 | 3.85e-25 | 95.1 |
| MS.gene59862.t1 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 5.88e-25 | 95.5 |
| MS.gene59862.t1 | AT1G70890 | 35.948 | 153 | 94 | 4 | 3 | 152 | 7 | 158 | 1.33e-24 | 93.2 |
| MS.gene59862.t1 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 4.26e-24 | 94.4 |
| MS.gene59862.t1 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 7.52e-24 | 95.1 |
| MS.gene59862.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 184 | 335 | 2.42e-22 | 91.3 |
| MS.gene59862.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 137 | 288 | 7.36e-23 | 91.7 |
| MS.gene59862.t1 | AT5G28000 | 32.026 | 153 | 100 | 4 | 3 | 152 | 13 | 164 | 5.78e-22 | 86.7 |
| MS.gene59862.t1 | AT4G23670 | 34.641 | 153 | 96 | 4 | 1 | 151 | 1 | 151 | 8.91e-22 | 85.9 |
| MS.gene59862.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 2.31e-21 | 87.0 |
| MS.gene59862.t1 | AT1G14930 | 31.210 | 157 | 104 | 4 | 1 | 155 | 1 | 155 | 3.46e-21 | 84.3 |
| MS.gene59862.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 5.54e-21 | 87.4 |
| MS.gene59862.t1 | AT1G70850 | 35.664 | 143 | 88 | 4 | 13 | 152 | 175 | 316 | 9.08e-21 | 86.7 |
| MS.gene59862.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 5.54e-21 | 87.4 |
| MS.gene59862.t1 | AT1G70850 | 35.664 | 143 | 88 | 4 | 13 | 152 | 175 | 316 | 9.08e-21 | 86.7 |
| MS.gene59862.t1 | AT2G01520 | 31.373 | 153 | 101 | 4 | 1 | 151 | 1 | 151 | 1.36e-20 | 82.8 |
| MS.gene59862.t1 | AT2G01530 | 32.680 | 153 | 99 | 4 | 1 | 151 | 1 | 151 | 1.35e-19 | 80.1 |
| MS.gene59862.t1 | AT1G14940 | 29.299 | 157 | 107 | 4 | 1 | 155 | 1 | 155 | 1.39e-18 | 77.8 |
| MS.gene59862.t1 | AT1G70870 | 35.484 | 155 | 78 | 5 | 1 | 150 | 1 | 138 | 2.64e-18 | 76.6 |
| MS.gene59862.t1 | AT1G14950 | 29.936 | 157 | 106 | 4 | 1 | 155 | 1 | 155 | 9.03e-18 | 75.5 |
| MS.gene59862.t1 | AT4G14060 | 30.065 | 153 | 103 | 4 | 1 | 151 | 1 | 151 | 1.03e-17 | 75.5 |
| MS.gene59862.t1 | AT1G23130 | 28.188 | 149 | 104 | 3 | 3 | 149 | 10 | 157 | 1.98e-17 | 74.7 |
| MS.gene59862.t1 | AT4G23680 | 30.263 | 152 | 102 | 4 | 1 | 150 | 1 | 150 | 5.11e-17 | 73.6 |
| MS.gene59862.t1 | AT1G70880 | 28.758 | 153 | 105 | 4 | 3 | 152 | 8 | 159 | 8.31e-17 | 73.2 |
| MS.gene59862.t1 | AT1G35260 | 29.861 | 144 | 96 | 4 | 9 | 149 | 8 | 149 | 1.10e-16 | 72.8 |
| MS.gene59862.t1 | AT1G30990 | 29.801 | 151 | 101 | 5 | 1 | 149 | 1 | 148 | 8.49e-16 | 70.5 |
| MS.gene59862.t1 | AT1G23120 | 27.333 | 150 | 101 | 5 | 3 | 149 | 1 | 145 | 1.52e-15 | 69.7 |
| MS.gene59862.t1 | AT1G23120 | 26.241 | 141 | 98 | 4 | 10 | 149 | 60 | 195 | 3.80e-15 | 69.7 |
| MS.gene59862.t1 | AT1G14960 | 28.387 | 155 | 107 | 4 | 1 | 153 | 1 | 153 | 7.32e-15 | 68.2 |
| MS.gene59862.t1 | AT1G24020 | 30.968 | 155 | 98 | 4 | 1 | 150 | 1 | 151 | 5.07e-14 | 65.9 |
| MS.gene59862.t1 | AT1G24020 | 30.968 | 155 | 98 | 4 | 1 | 150 | 1 | 151 | 5.07e-14 | 65.9 |
| MS.gene59862.t1 | AT3G26460 | 26.797 | 153 | 109 | 3 | 1 | 151 | 1 | 152 | 1.31e-13 | 64.7 |
| MS.gene59862.t1 | AT1G35310 | 28.058 | 139 | 96 | 4 | 13 | 149 | 12 | 148 | 2.09e-13 | 63.9 |
| MS.gene59862.t1 | AT3G26450 | 25.325 | 154 | 110 | 5 | 1 | 151 | 1 | 152 | 1.10e-11 | 59.7 |
| MS.gene59862.t1 | AT1G14940 | 26.115 | 157 | 96 | 4 | 1 | 155 | 1 | 139 | 1.39e-11 | 58.9 |
Find 29 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCACTTACAAGCTATT+TGG | 0.220413 | 8.3:+53683219 | MS.gene59862:CDS |
| GTCTTTAAGCTCATCTTAGA+AGG | 0.291250 | 8.3:+53683264 | MS.gene59862:CDS |
| ATCTTCACCTTCGTGAAGTT+TGG | 0.302246 | 8.3:-53681715 | None:intergenic |
| AACATTAATGAAAGAGTTCA+TGG | 0.350725 | 8.3:+53681690 | MS.gene59862:CDS |
| ATGGAAGTTCTGCTGTTAGA+TGG | 0.407851 | 8.3:+53683301 | MS.gene59862:CDS |
| GGTAAACTTATTACTGAACT+TGG | 0.415223 | 8.3:+53681606 | MS.gene59862:CDS |
| TGGAGATATTGAAAACTATA+AGG | 0.439418 | 8.3:+53683242 | MS.gene59862:CDS |
| AGGAAATCCATCCATCCATT+TGG | 0.440781 | 8.3:-53683363 | None:intergenic |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8.3:+53681759 | MS.gene59862:CDS |
| ATCACTTACAAGCTATTTGG+TGG | 0.474679 | 8.3:+53683222 | MS.gene59862:CDS |
| AAAAGCACTAGAGATATTGA+TGG | 0.477335 | 8.3:+53683390 | MS.gene59862:CDS |
| AACTTCACGAAGGTGAAGAT+TGG | 0.498236 | 8.3:+53681718 | MS.gene59862:CDS |
| TCATCTTGTCAAAGGGGAAA+AGG | 0.504175 | 8.3:+53683413 | MS.gene59862:CDS |
| AGATTGGCATCATACTGATT+CGG | 0.504369 | 8.3:+53681734 | MS.gene59862:CDS |
| TTGATGGTCATCTTGTCAAA+GGG | 0.506740 | 8.3:+53683406 | MS.gene59862:CDS |
| GAGGATATCGATACTCCAAA+TGG | 0.515854 | 8.3:+53683348 | MS.gene59862:CDS |
| CGATACTCCAAATGGATGGA+TGG | 0.534738 | 8.3:+53683356 | MS.gene59862:CDS |
| GTAAACTTATTACTGAACTT+GGG | 0.542207 | 8.3:+53681607 | MS.gene59862:CDS |
| ATTGATGGTCATCTTGTCAA+AGG | 0.543582 | 8.3:+53683405 | MS.gene59862:CDS |
| TCTTTAAGCTCATCTTAGAA+GGG | 0.545692 | 8.3:+53683265 | MS.gene59862:CDS |
| AGTTTGTAGAACTTGTCAGC+TGG | 0.569465 | 8.3:-53681639 | None:intergenic |
| GAAGGGCTTAACAAGGCTGA+TGG | 0.584478 | 8.3:+53683282 | MS.gene59862:CDS |
| ATATCGATACTCCAAATGGA+TGG | 0.593139 | 8.3:+53683352 | MS.gene59862:CDS |
| ATACTGATTCGGTTAAACAC+TGG | 0.606046 | 8.3:+53681745 | MS.gene59862:CDS |
| CATCTTAGAAGGGCTTAACA+AGG | 0.611102 | 8.3:+53683275 | MS.gene59862:CDS |
| TGATGGTCATCTTGTCAAAG+GGG | 0.652198 | 8.3:+53683407 | MS.gene59862:CDS |
| TGACGTAATAACAGATGGCG+AGG | 0.668621 | 8.3:+53683149 | MS.gene59862:intron |
| TGATTATGAGAAGAACAATG+AGG | 0.681814 | 8.3:+53683329 | MS.gene59862:CDS |
| CATGGTGCCAAACTTCACGA+AGG | 0.732106 | 8.3:+53681708 | MS.gene59862:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAAAAAAATGTGAAA+GGG | + | chr8.3:53682778-53682797 | MS.gene59862:intron | 10.0% |
| !!! | TATCTTATTATAATATTTTC+TGG | + | chr8.3:53683057-53683076 | MS.gene59862:intron | 10.0% |
| !! | AAATTCTAAATTATGTCAAT+AGG | - | chr8.3:53681987-53682006 | None:intergenic | 15.0% |
| !! | AAATTTACTATGAAATTGTA+GGG | + | chr8.3:53682483-53682502 | MS.gene59862:intron | 15.0% |
| !! | CAATAATATATATTATGAGT+GGG | - | chr8.3:53682193-53682212 | None:intergenic | 15.0% |
| !! | TAAATTTACTATGAAATTGT+AGG | + | chr8.3:53682482-53682501 | MS.gene59862:intron | 15.0% |
| !! | TATAGTAATAAAAAGAAGAT+TGG | + | chr8.3:53681873-53681892 | MS.gene59862:intron | 15.0% |
| !! | TCAATAATATATATTATGAG+TGG | - | chr8.3:53682194-53682213 | None:intergenic | 15.0% |
| !!! | ATCTTTAAATAGTATTTTAG+AGG | + | chr8.3:53682870-53682889 | MS.gene59862:intron | 15.0% |
| !!! | CATTTTTAAAAAAATGTGAA+AGG | + | chr8.3:53682777-53682796 | MS.gene59862:intron | 15.0% |
| !!! | GGATTTATATTTTGTTTTTT+AGG | + | chr8.3:53682691-53682710 | MS.gene59862:intron | 15.0% |
| !!! | GTTTTCTATTACAAATTTTT+TGG | + | chr8.3:53681842-53681861 | MS.gene59862:intron | 15.0% |
| !!! | CAATAAAATACGTTTTTCAA+AGG | - | chr8.3:53683109-53683128 | None:intergenic | 20.0% |
| !!! | CCTTAAAGTTTTTAGTAAAA+CGG | + | chr8.3:53682414-53682433 | MS.gene59862:intron | 20.0% |
| !!! | GTATAATTTTTTCTTTACGA+TGG | + | chr8.3:53682308-53682327 | MS.gene59862:intron | 20.0% |
| !!! | TTTTGTTTTTTAGGATACAA+AGG | + | chr8.3:53682700-53682719 | MS.gene59862:intron | 20.0% |
| ! | AAAAAATTATACTCGTACCA+AGG | - | chr8.3:53682300-53682319 | None:intergenic | 25.0% |
| ! | AAAATCACTTACAAGCTATT+TGG | + | chr8.3:53683219-53683238 | MS.gene59862:CDS | 25.0% |
| ! | AACATTAATGAAAGAGTTCA+TGG | + | chr8.3:53681690-53681709 | MS.gene59862:CDS | 25.0% |
| ! | ACAATGCATAATATATGCAA+AGG | + | chr8.3:53682935-53682954 | MS.gene59862:intron | 25.0% |
| ! | AGTATCATTTGTTTCCTTTA+AGG | - | chr8.3:53682259-53682278 | None:intergenic | 25.0% |
| ! | GTAAACTTATTACTGAACTT+GGG | + | chr8.3:53681607-53681626 | MS.gene59862:CDS | 25.0% |
| ! | GTTTGTATAATATGATCCTT+CGG | + | chr8.3:53682373-53682392 | MS.gene59862:intron | 25.0% |
| ! | TGGAGATATTGAAAACTATA+AGG | + | chr8.3:53683242-53683261 | MS.gene59862:CDS | 25.0% |
| ! | TTATCTCTAGACAAAAAATC+TGG | - | chr8.3:53682345-53682364 | None:intergenic | 25.0% |
| ! | TTGTCTAGAGATAAAAAGTA+GGG | + | chr8.3:53682351-53682370 | MS.gene59862:intron | 25.0% |
| ! | TTTGTCTAGAGATAAAAAGT+AGG | + | chr8.3:53682350-53682369 | MS.gene59862:intron | 25.0% |
| !! | CCGTTTTACTAAAAACTTTA+AGG | - | chr8.3:53682417-53682436 | None:intergenic | 25.0% |
| !! | TCATTTTACAACAGTAATGT+GGG | + | chr8.3:53682670-53682689 | MS.gene59862:intron | 25.0% |
| !!! | GTGCTTTATTTAAAGATCTA+AGG | - | chr8.3:53682815-53682834 | None:intergenic | 25.0% |
| AAAGCAACAAATGACCTTAA+AGG | + | chr8.3:53682242-53682261 | MS.gene59862:intron | 30.0% | |
| AAATGATACTCAACCATCTT+TGG | + | chr8.3:53682269-53682288 | MS.gene59862:intron | 30.0% | |
| AGCCATGAAATTACAAATCA+TGG | - | chr8.3:53682557-53682576 | None:intergenic | 30.0% | |
| CATAATATATGCAAAGGTTC+AGG | + | chr8.3:53682941-53682960 | MS.gene59862:intron | 30.0% | |
| GGTAAACTTATTACTGAACT+TGG | + | chr8.3:53681606-53681625 | MS.gene59862:CDS | 30.0% | |
| TAATTTCATGGCTCTTTCTT+GGG | + | chr8.3:53682564-53682583 | MS.gene59862:intron | 30.0% | |
| TCTTCGTTATAGATCTCATT+TGG | - | chr8.3:53681913-53681932 | None:intergenic | 30.0% | |
| TCTTTAAGCTCATCTTAGAA+GGG | + | chr8.3:53683265-53683284 | MS.gene59862:CDS | 30.0% | |
| TGATTATGAGAAGAACAATG+AGG | + | chr8.3:53683329-53683348 | MS.gene59862:CDS | 30.0% | |
| ! | TGCCATGATTTGTAATTTCA+TGG | + | chr8.3:53682552-53682571 | MS.gene59862:intron | 30.0% |
| !! | AAAAGCACTAGAGATATTGA+TGG | + | chr8.3:53683390-53683409 | MS.gene59862:CDS | 30.0% |
| !! | GTCATTTTACAACAGTAATG+TGG | + | chr8.3:53682669-53682688 | MS.gene59862:intron | 30.0% |
| AAACACTGGACTTATGTCAT+AGG | + | chr8.3:53681759-53681778 | MS.gene59862:CDS | 35.0% | |
| ACTATGAAATTGTAGGGTTC+AGG | + | chr8.3:53682489-53682508 | MS.gene59862:intron | 35.0% | |
| ATATCGATACTCCAAATGGA+TGG | + | chr8.3:53683352-53683371 | MS.gene59862:CDS | 35.0% | |
| ATCACTTACAAGCTATTTGG+TGG | + | chr8.3:53683222-53683241 | MS.gene59862:CDS | 35.0% | |
| GTAATTTCATGGCTCTTTCT+TGG | + | chr8.3:53682563-53682582 | MS.gene59862:intron | 35.0% | |
| GTCTTTAAGCTCATCTTAGA+AGG | + | chr8.3:53683264-53683283 | MS.gene59862:CDS | 35.0% | |
| ! | AGATTGGCATCATACTGATT+CGG | + | chr8.3:53681734-53681753 | MS.gene59862:CDS | 35.0% |
| ! | ATTGATGGTCATCTTGTCAA+AGG | + | chr8.3:53683405-53683424 | MS.gene59862:CDS | 35.0% |
| ! | TATCTCTAGTGCTTTTGCTA+AGG | - | chr8.3:53683386-53683405 | None:intergenic | 35.0% |
| ! | TTGATGGTCATCTTGTCAAA+GGG | + | chr8.3:53683406-53683425 | MS.gene59862:CDS | 35.0% |
| !! | ATACTGATTCGGTTAAACAC+TGG | + | chr8.3:53681745-53681764 | MS.gene59862:CDS | 35.0% |
| !!! | GAATGCCTCTTTCTTTTTTG+TGG | - | chr8.3:53682982-53683001 | None:intergenic | 35.0% |
| AACCATCTTTGGATTCACCT+TGG | + | chr8.3:53682280-53682299 | MS.gene59862:intron | 40.0% | |
| AACTTCACGAAGGTGAAGAT+TGG | + | chr8.3:53681718-53681737 | MS.gene59862:CDS | 40.0% | |
| AGGAAATCCATCCATCCATT+TGG | - | chr8.3:53683366-53683385 | None:intergenic | 40.0% | |
| AGTTTGTAGAACTTGTCAGC+TGG | - | chr8.3:53681642-53681661 | None:intergenic | 40.0% | |
| ATCTTCACCTTCGTGAAGTT+TGG | - | chr8.3:53681718-53681737 | None:intergenic | 40.0% | |
| ATGGAAGTTCTGCTGTTAGA+TGG | + | chr8.3:53683301-53683320 | MS.gene59862:CDS | 40.0% | |
| CATCTTAGAAGGGCTTAACA+AGG | + | chr8.3:53683275-53683294 | MS.gene59862:CDS | 40.0% | |
| CGAGACTGATCTAACAATGA+AGG | + | chr8.3:53681950-53681969 | MS.gene59862:intron | 40.0% | |
| GAGGATATCGATACTCCAAA+TGG | + | chr8.3:53683348-53683367 | MS.gene59862:CDS | 40.0% | |
| TACCAAGGTGAATCCAAAGA+TGG | - | chr8.3:53682285-53682304 | None:intergenic | 40.0% | |
| TATCGAAATCATTGCACACG+AGG | + | chr8.3:53682090-53682109 | MS.gene59862:intron | 40.0% | |
| TCATCTTGTCAAAGGGGAAA+AGG | + | chr8.3:53683413-53683432 | MS.gene59862:CDS | 40.0% | |
| TGATGGTCATCTTGTCAAAG+GGG | + | chr8.3:53683407-53683426 | MS.gene59862:CDS | 40.0% | |
| ! | AAAGGTTCAGGTTCAAATCC+CGG | + | chr8.3:53682953-53682972 | MS.gene59862:intron | 40.0% |
| ! | CGTCTTTAGACATTTTCCGA+AGG | - | chr8.3:53682392-53682411 | None:intergenic | 40.0% |
| !!! | TCTTTCTTTTTTGTGGTGGC+CGG | - | chr8.3:53682975-53682994 | None:intergenic | 40.0% |
| !!! | TGCCTCTTTCTTTTTTGTGG+TGG | - | chr8.3:53682979-53682998 | None:intergenic | 40.0% |
| CGATACTCCAAATGGATGGA+TGG | + | chr8.3:53683356-53683375 | MS.gene59862:CDS | 45.0% | |
| CTTGGGTGCAATGTATGCTT+GGG | + | chr8.3:53682581-53682600 | MS.gene59862:intron | 45.0% | |
| GCCATCTGTTATTACGTCAG+AGG | - | chr8.3:53683148-53683167 | None:intergenic | 45.0% | |
| GCCTCTGACGTAATAACAGA+TGG | + | chr8.3:53683144-53683163 | MS.gene59862:intron | 45.0% | |
| GGCCACCACAAAAAAGAAAG+AGG | + | chr8.3:53682974-53682993 | MS.gene59862:intron | 45.0% | |
| TCTTGGGTGCAATGTATGCT+TGG | + | chr8.3:53682580-53682599 | MS.gene59862:intron | 45.0% | |
| TGACGTAATAACAGATGGCG+AGG | + | chr8.3:53683149-53683168 | MS.gene59862:intron | 45.0% | |
| !!! | CTTTCTTTTTTGTGGTGGCC+GGG | - | chr8.3:53682974-53682993 | None:intergenic | 45.0% |
| !! | ATATATATTATTGAAAAAAA+AGG | + | chr8.3:53682200-53682219 | MS.gene59862:intron | 5.0% |
| !! | TTAATTATCAAAAAAAATAA+TGG | - | chr8.3:53682155-53682174 | None:intergenic | 5.0% |
| !! | TTATAATAAGATAATAATAA+AGG | - | chr8.3:53683050-53683069 | None:intergenic | 5.0% |
| !!! | CTATTATTATTTTATTTTTT+TGG | - | chr8.3:53682638-53682657 | None:intergenic | 5.0% |
| !!! | TAATTTAGAATTTTTTTAAT+TGG | + | chr8.3:53681994-53682013 | MS.gene59862:intron | 5.0% |
| !!! | TATTATATATTTTTTTAATG+CGG | + | chr8.3:53683013-53683032 | MS.gene59862:intron | 5.0% |
| CTTCGTGTGCTTAGCTCAGT+TGG | + | chr8.3:53682907-53682926 | MS.gene59862:intron | 50.0% | |
| GAAGGGCTTAACAAGGCTGA+TGG | + | chr8.3:53683282-53683301 | MS.gene59862:CDS | 50.0% | |
| ! | CATGGTGCCAAACTTCACGA+AGG | + | chr8.3:53681708-53681727 | MS.gene59862:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 53681594 | 53683446 | 53681594 | ID=MS.gene59862 |
| chr8.3 | mRNA | 53681594 | 53683446 | 53681594 | ID=MS.gene59862.t1;Parent=MS.gene59862 |
| chr8.3 | exon | 53681594 | 53681780 | 53681594 | ID=MS.gene59862.t1.exon1;Parent=MS.gene59862.t1 |
| chr8.3 | CDS | 53681594 | 53681780 | 53681594 | ID=cds.MS.gene59862.t1;Parent=MS.gene59862.t1 |
| chr8.3 | exon | 53683163 | 53683446 | 53683163 | ID=MS.gene59862.t1.exon2;Parent=MS.gene59862.t1 |
| chr8.3 | CDS | 53683163 | 53683446 | 53683163 | ID=cds.MS.gene59862.t1;Parent=MS.gene59862.t1 |
| Gene Sequence |
| Protein sequence |
