Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59859.t1 | XP_013445245.1 | 89.7 | 156 | 16 | 0 | 1 | 156 | 1 | 156 | 3.60E-78 | 300.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59859.t1 | Q9SSK5 | 35.9 | 153 | 94 | 4 | 3 | 152 | 7 | 158 | 1.9e-19 | 97.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59859.t1 | A0A072TPY0 | 89.7 | 156 | 16 | 0 | 1 | 156 | 1 | 156 | 2.6e-78 | 300.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59859.t1 | MTR_8g045665 | 89.744 | 156 | 16 | 0 | 1 | 156 | 1 | 156 | 3.62e-103 | 292 |
| MS.gene59859.t1 | MTR_8g045695 | 89.103 | 156 | 17 | 0 | 1 | 156 | 1 | 156 | 2.95e-102 | 290 |
| MS.gene59859.t1 | MTR_8g045640 | 85.897 | 156 | 22 | 0 | 1 | 156 | 1 | 156 | 1.00e-97 | 278 |
| MS.gene59859.t1 | MTR_8g045735 | 83.226 | 155 | 26 | 0 | 1 | 155 | 1 | 155 | 5.31e-97 | 276 |
| MS.gene59859.t1 | MTR_8g045560 | 84.615 | 156 | 24 | 0 | 1 | 156 | 1 | 156 | 2.28e-96 | 275 |
| MS.gene59859.t1 | MTR_8g045520 | 77.070 | 157 | 35 | 1 | 1 | 156 | 1 | 157 | 2.83e-86 | 249 |
| MS.gene59859.t1 | MTR_8g045400 | 71.975 | 157 | 42 | 2 | 1 | 156 | 1 | 156 | 2.85e-80 | 234 |
| MS.gene59859.t1 | MTR_8g045490 | 71.895 | 153 | 42 | 1 | 1 | 152 | 1 | 153 | 1.58e-79 | 232 |
| MS.gene59859.t1 | MTR_8g045570 | 71.053 | 152 | 43 | 1 | 1 | 151 | 1 | 152 | 7.07e-78 | 228 |
| MS.gene59859.t1 | MTR_8g045555 | 69.737 | 152 | 45 | 1 | 1 | 151 | 1 | 152 | 1.07e-76 | 225 |
| MS.gene59859.t1 | MTR_8g045300 | 65.806 | 155 | 52 | 1 | 1 | 154 | 1 | 155 | 4.64e-74 | 218 |
| MS.gene59859.t1 | MTR_1g030810 | 43.137 | 153 | 83 | 3 | 1 | 150 | 1 | 152 | 5.06e-38 | 127 |
| MS.gene59859.t1 | MTR_1g030820 | 39.869 | 153 | 88 | 3 | 1 | 150 | 1 | 152 | 7.28e-37 | 124 |
| MS.gene59859.t1 | MTR_1g030840 | 38.462 | 156 | 87 | 5 | 1 | 148 | 1 | 155 | 4.95e-28 | 102 |
| MS.gene59859.t1 | MTR_8g012550 | 32.667 | 150 | 97 | 4 | 6 | 153 | 8 | 155 | 1.12e-25 | 95.9 |
| MS.gene59859.t1 | MTR_1g031640 | 37.838 | 148 | 82 | 6 | 7 | 151 | 7 | 147 | 1.96e-21 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59859.t1 | AT5G28010 | 33.987 | 153 | 97 | 4 | 3 | 152 | 15 | 166 | 1.07e-24 | 94.0 |
| MS.gene59859.t1 | AT5G28010 | 33.987 | 153 | 97 | 4 | 3 | 152 | 15 | 166 | 1.07e-24 | 94.0 |
| MS.gene59859.t1 | AT1G70890 | 35.948 | 153 | 94 | 4 | 3 | 152 | 7 | 158 | 9.64e-24 | 91.3 |
| MS.gene59859.t1 | AT1G70840 | 33.987 | 153 | 97 | 4 | 3 | 152 | 20 | 171 | 2.65e-23 | 90.5 |
| MS.gene59859.t1 | AT1G70830 | 34.641 | 153 | 96 | 4 | 3 | 152 | 22 | 173 | 1.50e-22 | 88.6 |
| MS.gene59859.t1 | AT1G70830 | 34.416 | 154 | 97 | 4 | 3 | 153 | 22 | 174 | 1.93e-22 | 89.0 |
| MS.gene59859.t1 | AT1G70830 | 34.416 | 154 | 97 | 4 | 3 | 153 | 22 | 174 | 1.28e-21 | 87.8 |
| MS.gene59859.t1 | AT5G28000 | 32.680 | 153 | 99 | 4 | 3 | 152 | 13 | 164 | 1.58e-21 | 85.5 |
| MS.gene59859.t1 | AT1G70830 | 34.641 | 153 | 96 | 4 | 3 | 152 | 137 | 288 | 1.78e-21 | 88.2 |
| MS.gene59859.t1 | AT1G70830 | 31.959 | 97 | 64 | 2 | 59 | 153 | 31 | 127 | 3.07e-11 | 60.1 |
| MS.gene59859.t1 | AT1G70830 | 34.416 | 154 | 97 | 4 | 3 | 153 | 22 | 174 | 2.11e-21 | 88.6 |
| MS.gene59859.t1 | AT1G70830 | 34.641 | 153 | 96 | 4 | 3 | 152 | 184 | 335 | 5.25e-21 | 87.4 |
| MS.gene59859.t1 | AT4G23670 | 33.333 | 153 | 98 | 4 | 1 | 151 | 1 | 151 | 4.42e-21 | 84.0 |
| MS.gene59859.t1 | AT1G70870 | 45.361 | 97 | 51 | 2 | 55 | 150 | 43 | 138 | 8.72e-21 | 82.8 |
| MS.gene59859.t1 | AT1G70850 | 35.664 | 143 | 88 | 4 | 13 | 152 | 175 | 316 | 1.43e-20 | 86.3 |
| MS.gene59859.t1 | AT1G70850 | 33.333 | 150 | 96 | 4 | 3 | 149 | 9 | 157 | 5.20e-20 | 84.7 |
| MS.gene59859.t1 | AT1G70850 | 35.664 | 143 | 88 | 4 | 13 | 152 | 175 | 316 | 1.43e-20 | 86.3 |
| MS.gene59859.t1 | AT1G70850 | 33.333 | 150 | 96 | 4 | 3 | 149 | 9 | 157 | 5.20e-20 | 84.7 |
| MS.gene59859.t1 | AT1G70850 | 33.333 | 150 | 96 | 4 | 3 | 149 | 9 | 157 | 2.61e-20 | 84.0 |
| MS.gene59859.t1 | AT1G14930 | 29.221 | 154 | 105 | 4 | 1 | 152 | 1 | 152 | 3.47e-19 | 79.3 |
| MS.gene59859.t1 | AT2G01520 | 28.758 | 153 | 105 | 4 | 1 | 151 | 1 | 151 | 2.21e-18 | 77.0 |
| MS.gene59859.t1 | AT1G23120 | 29.333 | 150 | 100 | 4 | 1 | 149 | 1 | 145 | 2.81e-18 | 76.6 |
| MS.gene59859.t1 | AT1G23120 | 29.787 | 141 | 93 | 4 | 10 | 149 | 60 | 195 | 8.10e-18 | 76.6 |
| MS.gene59859.t1 | AT1G24020 | 32.903 | 155 | 95 | 4 | 1 | 150 | 1 | 151 | 9.41e-17 | 72.8 |
| MS.gene59859.t1 | AT1G24020 | 32.903 | 155 | 95 | 4 | 1 | 150 | 1 | 151 | 9.41e-17 | 72.8 |
| MS.gene59859.t1 | AT1G23130 | 28.188 | 149 | 104 | 3 | 3 | 149 | 10 | 157 | 1.57e-16 | 72.4 |
| MS.gene59859.t1 | AT1G70880 | 30.065 | 153 | 103 | 4 | 3 | 152 | 8 | 159 | 2.65e-16 | 72.0 |
| MS.gene59859.t1 | AT1G14940 | 27.922 | 154 | 107 | 4 | 1 | 152 | 1 | 152 | 3.13e-16 | 71.6 |
| MS.gene59859.t1 | AT4G23680 | 28.289 | 152 | 105 | 4 | 1 | 150 | 1 | 150 | 3.99e-16 | 71.2 |
| MS.gene59859.t1 | AT4G14060 | 28.105 | 153 | 106 | 4 | 1 | 151 | 1 | 151 | 5.04e-16 | 70.9 |
| MS.gene59859.t1 | AT2G01530 | 28.105 | 153 | 106 | 4 | 1 | 151 | 1 | 151 | 8.58e-16 | 70.5 |
| MS.gene59859.t1 | AT1G30990 | 29.139 | 151 | 102 | 5 | 1 | 149 | 1 | 148 | 2.01e-15 | 69.3 |
| MS.gene59859.t1 | AT1G14950 | 26.623 | 154 | 109 | 4 | 1 | 152 | 1 | 152 | 2.23e-15 | 69.3 |
| MS.gene59859.t1 | AT3G26460 | 28.758 | 153 | 106 | 3 | 1 | 151 | 1 | 152 | 2.07e-14 | 66.6 |
| MS.gene59859.t1 | AT1G14960 | 25.806 | 155 | 111 | 4 | 1 | 153 | 1 | 153 | 3.08e-13 | 63.5 |
| MS.gene59859.t1 | AT1G35310 | 28.058 | 139 | 96 | 4 | 13 | 149 | 12 | 148 | 9.34e-13 | 62.4 |
| MS.gene59859.t1 | AT3G26450 | 25.974 | 154 | 109 | 5 | 1 | 151 | 1 | 152 | 5.06e-12 | 60.5 |
Find 29 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTACTTACAAGCTGTT+TGG | 0.370047 | 8.3:+53763299 | MS.gene59859:CDS |
| CACAAACTTTGTGCACTTCG+TGG | 0.405990 | 8.3:-53760191 | None:intergenic |
| ATGGAAGTTCTGCTGTTAGA+TGG | 0.407851 | 8.3:+53763381 | MS.gene59859:CDS |
| TGGTGATATTGAAAACTATA+AGG | 0.427258 | 8.3:+53763322 | MS.gene59859:CDS |
| ATCTTCACCTTCATGAAGCT+TGG | 0.441586 | 8.3:-53760229 | None:intergenic |
| AGGTAGTCCATCCAGCCATT+TGG | 0.456227 | 8.3:-53763443 | None:intergenic |
| AAAAGCACTAGAGATATTGA+TGG | 0.477335 | 8.3:+53763470 | MS.gene59859:CDS |
| TTTCCAAATATGGTGCTCGC+TGG | 0.484997 | 8.3:+53760099 | None:intergenic |
| AAACACTGGACTTATGTCAT+AGG | 0.490184 | 8.3:+53760273 | MS.gene59859:CDS |
| AGCTTCATGAAGGTGAAGAT+TGG | 0.494334 | 8.3:+53760232 | MS.gene59859:CDS |
| TTCCAAATATGGTGCTCGCT+GGG | 0.503897 | 8.3:+53760100 | None:intergenic |
| GGGAAACTTATCACTGAACT+AGG | 0.505963 | 8.3:+53760120 | MS.gene59859:CDS |
| ATATTGATGCTCCAAATGGC+TGG | 0.510199 | 8.3:+53763432 | MS.gene59859:CDS |
| ATTACTTACAAGCTGTTTGG+TGG | 0.516217 | 8.3:+53763302 | MS.gene59859:CDS |
| GAATTGATTACCAAGGCTGA+TGG | 0.534521 | 8.3:+53763362 | MS.gene59859:CDS |
| AGCAGAACTTCCATCAGCCT+TGG | 0.534921 | 8.3:-53763372 | None:intergenic |
| TGATGCTCCAAATGGCTGGA+TGG | 0.556128 | 8.3:+53763436 | MS.gene59859:CDS |
| GAGGATATTGATGCTCCAAA+TGG | 0.569211 | 8.3:+53763428 | MS.gene59859:CDS |
| CATCATGCCAAGCTTCATGA+AGG | 0.583004 | 8.3:+53760222 | MS.gene59859:CDS |
| AACTAGGGATCAAATCACCT+GGG | 0.586497 | 8.3:+53760136 | MS.gene59859:CDS |
| GAACTAGGGATCAAATCACC+TGG | 0.587711 | 8.3:+53760135 | MS.gene59859:CDS |
| ACAATGATTCAGTTAAACAC+TGG | 0.601945 | 8.3:+53760259 | MS.gene59859:CDS |
| AGTTTGAAGAACTTCTCCCC+AGG | 0.610513 | 8.3:-53760153 | None:intergenic |
| CATCTTAGAATTGATTACCA+AGG | 0.611750 | 8.3:+53763355 | MS.gene59859:CDS |
| GGAAACTTATCACTGAACTA+GGG | 0.628522 | 8.3:+53760121 | MS.gene59859:CDS |
| TGAATATGAGAAGAACAATG+AGG | 0.650125 | 8.3:+53763409 | MS.gene59859:CDS |
| GGTACACACATGCAATGAGA+AGG | 0.678141 | 8.3:+53763250 | MS.gene59859:CDS |
| TGACATAACAACAGACGGTG+AGG | 0.679179 | 8.3:+53763229 | MS.gene59859:intron |
| ACTAGGGATCAAATCACCTG+GGG | 0.728384 | 8.3:+53760137 | MS.gene59859:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTATAATATTTAAAAA+GGG | + | chr8.3:53760411-53760430 | MS.gene59859:intron | 0.0% |
| !! | TTAATTTATAATATTTAAAA+AGG | + | chr8.3:53760410-53760429 | MS.gene59859:intron | 0.0% |
| !! | ATAAAAAAAAGATATTGATA+AGG | - | chr8.3:53762908-53762927 | None:intergenic | 10.0% |
| !! | ATTATAAATTAAGTGATTAT+AGG | - | chr8.3:53761315-53761334 | None:intergenic | 10.0% |
| !!! | ATAAAATATTTGATTTTTTG+CGG | + | chr8.3:53762150-53762169 | MS.gene59859:intron | 10.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr8.3:53761849-53761868 | MS.gene59859:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr8.3:53761868-53761849 | None:intergenic | 15.0% |
| !! | AATAATATAGATTAAGTTAG+TGG | - | chr8.3:53762439-53762458 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr8.3:53761850-53761869 | MS.gene59859:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr8.3:53761869-53761850 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr8.3:53761628-53761647 | None:intergenic | 15.0% |
| !! | ATAACAAATTTATTTCAGAT+TGG | - | chr8.3:53762092-53762111 | None:intergenic | 15.0% |
| !! | TTAAATATAACTCTTCATTA+TGG | - | chr8.3:53760683-53760702 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | + | chr8.3:53761759-53761778 | MS.gene59859:intron | 15.0% |
| !!! | AACTAGTTTATTTTTTAGAT+AGG | - | chr8.3:53760818-53760837 | None:intergenic | 15.0% |
| !!! | AATTTTGCGATAATTTTTTA+CGG | - | chr8.3:53761593-53761612 | None:intergenic | 15.0% |
| !!! | CTCTTATATTATTTTAAGTA+GGG | - | chr8.3:53761924-53761943 | None:intergenic | 15.0% |
| !!! | TAAAAAAAAACACTTTCTTT+TGG | - | chr8.3:53761051-53761070 | None:intergenic | 15.0% |
| !!! | TCTCTTATATTATTTTAAGT+AGG | - | chr8.3:53761925-53761944 | None:intergenic | 15.0% |
| !!! | TGTATATGGTTTTATTTTTA+AGG | - | chr8.3:53762977-53762996 | None:intergenic | 15.0% |
| !!! | TTTAATAGTCTTATACATTA+GGG | - | chr8.3:53762941-53762960 | None:intergenic | 15.0% |
| !!! | TTTTAATAGTCTTATACATT+AGG | - | chr8.3:53762942-53762961 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTAAACGTAAACT+CGG | + | chr8.3:53761061-53761080 | MS.gene59859:intron | 15.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | - | chr8.3:53761498-53761517 | None:intergenic | 20.0% |
| !! | AAATTAGTTGTACTAGAAAT+GGG | - | chr8.3:53763036-53763055 | None:intergenic | 20.0% |
| !! | AATATTGAAAACACTTTATC+TGG | - | chr8.3:53760926-53760945 | None:intergenic | 20.0% |
| !! | ATAATATTTAAAAAGGGAAG+AGG | + | chr8.3:53760417-53760436 | MS.gene59859:intron | 20.0% |
| !! | ATGCTTGTTCAATAAAATTA+GGG | + | chr8.3:53762051-53762070 | MS.gene59859:intron | 20.0% |
| !! | GCTAATATAATATTGCAAAT+AGG | + | chr8.3:53760609-53760628 | MS.gene59859:intron | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | - | chr8.3:53761499-53761518 | None:intergenic | 20.0% |
| !! | TGCATATAAGAATTTGTATA+TGG | - | chr8.3:53762991-53763010 | None:intergenic | 20.0% |
| !!! | CAAAAATATTTGGTTTTTTC+CGG | - | chr8.3:53762316-53762335 | None:intergenic | 20.0% |
| !!! | TGACTATTCTGAAAAATAAT+CGG | - | chr8.3:53762538-53762557 | None:intergenic | 20.0% |
| !!! | TTATCGATTTTATTTCAGAT+TGG | - | chr8.3:53762134-53762153 | None:intergenic | 20.0% |
| !!! | TTTACGATTCAATTTTACAT+AGG | - | chr8.3:53760527-53760546 | None:intergenic | 20.0% |
| ! | AAAATTACTTACAAGCTGTT+TGG | + | chr8.3:53763299-53763318 | MS.gene59859:CDS | 25.0% |
| ! | AAACTATTCAAACTCTACTA+GGG | - | chr8.3:53762647-53762666 | None:intergenic | 25.0% |
| ! | AATATAACTCTTCATTATGG+TGG | - | chr8.3:53760680-53760699 | None:intergenic | 25.0% |
| ! | AGAAAATCAACCCAAAAAAA+TGG | + | chr8.3:53761024-53761043 | MS.gene59859:intron | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | - | chr8.3:53761465-53761484 | None:intergenic | 25.0% |
| ! | ATAATATTTAGAAAAGGGAG+AGG | + | chr8.3:53761330-53761349 | MS.gene59859:intron | 25.0% |
| ! | CAAACACATCCAAAAATATT+TGG | - | chr8.3:53762326-53762345 | None:intergenic | 25.0% |
| ! | CAAATTAGTTGTACTAGAAA+TGG | - | chr8.3:53763037-53763056 | None:intergenic | 25.0% |
| ! | CAATATTAGAACCAAATACA+TGG | + | chr8.3:53760939-53760958 | MS.gene59859:intron | 25.0% |
| ! | CATAAACAATAAAAGCCTAA+GGG | - | chr8.3:53762001-53762020 | None:intergenic | 25.0% |
| ! | CATGCTTGTTCAATAAAATT+AGG | + | chr8.3:53762050-53762069 | MS.gene59859:intron | 25.0% |
| ! | GATACTTAAAAACGTAAACT+CGG | + | chr8.3:53761203-53761222 | MS.gene59859:intron | 25.0% |
| ! | TCATAAGAAAACTACCAAAA+CGG | - | chr8.3:53761978-53761997 | None:intergenic | 25.0% |
| ! | TGGTGATATTGAAAACTATA+AGG | + | chr8.3:53763322-53763341 | MS.gene59859:CDS | 25.0% |
| ! | TTACAAGGCTTTACTTAAAA+GGG | + | chr8.3:53761362-53761381 | MS.gene59859:intron | 25.0% |
| ! | TTCGAAATAAAAATCACATG+CGG | - | chr8.3:53762577-53762596 | None:intergenic | 25.0% |
| ! | TTTACAAGGCTTTACTTAAA+AGG | + | chr8.3:53761361-53761380 | MS.gene59859:intron | 25.0% |
| !! | AGTGTGATTTTATAACTTCA+AGG | - | chr8.3:53762768-53762787 | None:intergenic | 25.0% |
| !! | CGGAAAAAACCAAATATTTT+TGG | + | chr8.3:53762314-53762333 | MS.gene59859:intron | 25.0% |
| !! | TTTTCCGGTTTTCAATTTTT+TGG | - | chr8.3:53762301-53762320 | None:intergenic | 25.0% |
| !! | TTTTGCGGTTTTCAATTTTT+TGG | + | chr8.3:53762165-53762184 | MS.gene59859:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | + | chr8.3:53761788-53761807 | MS.gene59859:intron | 25.0% |
| !!! | CAAATATTTTTGGATGTGTT+TGG | + | chr8.3:53762324-53762343 | MS.gene59859:intron | 25.0% |
| !!! | CAATCTTTTTAAAGTACTCT+TGG | + | chr8.3:53763168-53763187 | MS.gene59859:intron | 25.0% |
| !!! | GAAGGTAAACTCATTTTTTT+GGG | - | chr8.3:53761167-53761186 | None:intergenic | 25.0% |
| !!! | GAGAGGTATATAATTTTACA+AGG | + | chr8.3:53761347-53761366 | MS.gene59859:intron | 25.0% |
| !!! | GGATCGATTTTATTTTAGAT+TGG | + | chr8.3:53762186-53762205 | MS.gene59859:intron | 25.0% |
| !!! | GTTGTTTTGTAAAAACAGTT+AGG | + | chr8.3:53762349-53762368 | MS.gene59859:intron | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | + | chr8.3:53761787-53761806 | MS.gene59859:intron | 25.0% |
| !!! | TTCTTTTGGACCATTTTTTT+GGG | - | chr8.3:53761037-53761056 | None:intergenic | 25.0% |
| !!! | TTTCTTTTGGACCATTTTTT+TGG | - | chr8.3:53761038-53761057 | None:intergenic | 25.0% |
| ACAATGATTCAGTTAAACAC+TGG | + | chr8.3:53760259-53760278 | MS.gene59859:CDS | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | - | chr8.3:53761725-53761744 | None:intergenic | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | - | chr8.3:53761466-53761485 | None:intergenic | 30.0% | |
| CATCTTAGAATTGATTACCA+AGG | + | chr8.3:53763355-53763374 | MS.gene59859:CDS | 30.0% | |
| CGATCCAAAAAATTGAAAAC+CGG | + | chr8.3:53762294-53762313 | MS.gene59859:intron | 30.0% | |
| GAAACTATTCAAACTCTACT+AGG | - | chr8.3:53762648-53762667 | None:intergenic | 30.0% | |
| GACATTAATTTCAGTACCTT+GGG | + | chr8.3:53760976-53760995 | MS.gene59859:intron | 30.0% | |
| GCATAAACAATAAAAGCCTA+AGG | - | chr8.3:53762002-53762021 | None:intergenic | 30.0% | |
| TGAATATGAGAAGAACAATG+AGG | + | chr8.3:53763409-53763428 | MS.gene59859:CDS | 30.0% | |
| TGTACTAGAAATGGGTATAT+TGG | - | chr8.3:53763028-53763047 | None:intergenic | 30.0% | |
| ! | GCAAGAAATAAGAAAAGTGT+TGG | - | chr8.3:53763149-53763168 | None:intergenic | 30.0% |
| ! | TGCGTTATTATGTTACTTGT+TGG | + | chr8.3:53762395-53762414 | MS.gene59859:intron | 30.0% |
| !! | AAAAGCACTAGAGATATTGA+TGG | + | chr8.3:53763470-53763489 | MS.gene59859:CDS | 30.0% |
| !! | ATTGATGGTCATCTTTTCAA+GGG | + | chr8.3:53763485-53763504 | MS.gene59859:CDS | 30.0% |
| !! | GGATCGATTTTATTTCAGAT+TGG | - | chr8.3:53762280-53762299 | None:intergenic | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr8.3:53761881-53761900 | MS.gene59859:intron | 30.0% |
| !! | TATTGATGGTCATCTTTTCA+AGG | + | chr8.3:53763484-53763503 | MS.gene59859:CDS | 30.0% |
| !! | TATTTTTGTGTCAAGATGTG+AGG | - | chr8.3:53762804-53762823 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr8.3:53761880-53761899 | MS.gene59859:intron | 30.0% |
| !! | TTTTTGGATGGTTTTTTGGA+TGG | - | chr8.3:53760761-53760780 | None:intergenic | 30.0% |
| !!! | AACTTGTGAACTTGCTTTTT+TGG | - | chr8.3:53760777-53760796 | None:intergenic | 30.0% |
| !!! | CAATTCTTTTTTTAAGCCCA+AGG | - | chr8.3:53760995-53761014 | None:intergenic | 30.0% |
| !!! | CGAAGGTAAACTCATTTTTT+TGG | - | chr8.3:53761168-53761187 | None:intergenic | 30.0% |
| !!! | TGCTTTTTTGGATGGTTTTT+TGG | - | chr8.3:53760765-53760784 | None:intergenic | 30.0% |
| AAACACTGGACTTATGTCAT+AGG | + | chr8.3:53760273-53760292 | MS.gene59859:CDS | 35.0% | |
| AAGAAAACTACCAAAACGGA+TGG | - | chr8.3:53761974-53761993 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr8.3:53761865-53761884 | MS.gene59859:intron | 35.0% | |
| ATTACTTACAAGCTGTTTGG+TGG | + | chr8.3:53763302-53763321 | MS.gene59859:CDS | 35.0% | |
| CGACATTAATTTCAGTACCT+TGG | + | chr8.3:53760975-53760994 | MS.gene59859:intron | 35.0% | |
| CTAAGTTCACCTTGTTAACT+AGG | + | chr8.3:53762026-53762045 | MS.gene59859:intron | 35.0% | |
| CTAGTTAACAAGGTGAACTT+AGG | - | chr8.3:53762028-53762047 | None:intergenic | 35.0% | |
| GAGTTTAACACGTGTTAACT+CGG | + | chr8.3:53761114-53761133 | MS.gene59859:intron | 35.0% | |
| GGAAACTTATCACTGAACTA+GGG | + | chr8.3:53760121-53760140 | MS.gene59859:CDS | 35.0% | |
| GGAGTAGAATTTGATGAAGT+GGG | - | chr8.3:53760905-53760924 | None:intergenic | 35.0% | |
| GTGTTAAACTCGTGTAAACT+CGG | - | chr8.3:53761105-53761124 | None:intergenic | 35.0% | |
| TCAAAAACGTGTTAACTCGA+AGG | - | chr8.3:53761185-53761204 | None:intergenic | 35.0% | |
| TGGAGTAGAATTTGATGAAG+TGG | - | chr8.3:53760906-53760925 | None:intergenic | 35.0% | |
| TGTTAAACTCGTGTAAACTC+GGG | - | chr8.3:53761104-53761123 | None:intergenic | 35.0% | |
| ! | ACGAGTTAACACTTGATTTG+TGG | + | chr8.3:53761234-53761253 | MS.gene59859:intron | 35.0% |
| ! | ATGTTAACCCATGCTTGTTA+GGG | + | chr8.3:53762239-53762258 | MS.gene59859:intron | 35.0% |
| ! | GTAGTTTTCTTATGACCCTT+AGG | + | chr8.3:53761983-53762002 | MS.gene59859:intron | 35.0% |
| ! | GTTAACATGGGTTGAGTTTA+GGG | - | chr8.3:53762227-53762246 | None:intergenic | 35.0% |
| ! | TAACAAGCATGGGTTAACAT+GGG | - | chr8.3:53762239-53762258 | None:intergenic | 35.0% |
| ! | TATCTCTAGTGCTTTTGCTA+AGG | - | chr8.3:53763466-53763485 | None:intergenic | 35.0% |
| !! | ACACTTGATTTGTGGAAAAC+TGG | + | chr8.3:53761242-53761261 | MS.gene59859:intron | 35.0% |
| !! | ATTATAGGTTCTAAACCCAG+AGG | - | chr8.3:53761300-53761319 | None:intergenic | 35.0% |
| !! | GACTCTGATGGATTAAACTT+GGG | - | chr8.3:53761269-53761288 | None:intergenic | 35.0% |
| !! | TGACTCTGATGGATTAAACT+TGG | - | chr8.3:53761270-53761289 | None:intergenic | 35.0% |
| !! | TGCAAGGTCGCTATTTTATA+GGG | - | chr8.3:53761405-53761424 | None:intergenic | 35.0% |
| !! | TTATAGGTTCTAAACCCAGA+GGG | - | chr8.3:53761299-53761318 | None:intergenic | 35.0% |
| !! | TTGATGGTCATCTTTTCAAG+GGG | + | chr8.3:53763486-53763505 | MS.gene59859:CDS | 35.0% |
| !! | TTGCAAGGTCGCTATTTTAT+AGG | - | chr8.3:53761406-53761425 | None:intergenic | 35.0% |
| !!! | TGTGAACTTGCTTTTTTGGA+TGG | - | chr8.3:53760773-53760792 | None:intergenic | 35.0% |
| AAATCACATGCGGTTCAGTT+TGG | - | chr8.3:53762567-53762586 | None:intergenic | 40.0% | |
| AACTAGGGATCAAATCACCT+GGG | + | chr8.3:53760136-53760155 | MS.gene59859:CDS | 40.0% | |
| AAGTAGGGACTAAACTTGCA+AGG | - | chr8.3:53761421-53761440 | None:intergenic | 40.0% | |
| ACCGTCTGTTGTTATGTCAA+AGG | - | chr8.3:53763228-53763247 | None:intergenic | 40.0% | |
| AGCTTCATGAAGGTGAAGAT+TGG | + | chr8.3:53760232-53760251 | MS.gene59859:CDS | 40.0% | |
| ATATTGATGCTCCAAATGGC+TGG | + | chr8.3:53763432-53763451 | MS.gene59859:CDS | 40.0% | |
| ATCTTCACCTTCATGAAGCT+TGG | - | chr8.3:53760232-53760251 | None:intergenic | 40.0% | |
| ATGGAAGTTCTGCTGTTAGA+TGG | + | chr8.3:53763381-53763400 | MS.gene59859:CDS | 40.0% | |
| CAAGCATGTCCTAGTTAACA+AGG | - | chr8.3:53762038-53762057 | None:intergenic | 40.0% | |
| CACTAGAGAAGACCACATTA+TGG | + | chr8.3:53760448-53760467 | MS.gene59859:intron | 40.0% | |
| CATGTTAACCCATGCTTGTT+AGG | + | chr8.3:53762238-53762257 | MS.gene59859:intron | 40.0% | |
| CGAGTTGTAAAACCTTGCTT+GGG | - | chr8.3:53760477-53760496 | None:intergenic | 40.0% | |
| GAATTGATTACCAAGGCTGA+TGG | + | chr8.3:53763362-53763381 | MS.gene59859:CDS | 40.0% | |
| GAGGATATTGATGCTCCAAA+TGG | + | chr8.3:53763428-53763447 | MS.gene59859:CDS | 40.0% | |
| GCCTTTGACATAACAACAGA+CGG | + | chr8.3:53763224-53763243 | MS.gene59859:intron | 40.0% | |
| GGGAAACTTATCACTGAACT+AGG | + | chr8.3:53760120-53760139 | MS.gene59859:CDS | 40.0% | |
| GTGAGTTCAAGCCATGTATT+TGG | - | chr8.3:53760953-53760972 | None:intergenic | 40.0% | |
| TAGGTACGTAAAACGAGTTG+AGG | - | chr8.3:53760508-53760527 | None:intergenic | 40.0% | |
| TGAACATCCCTAACAAGCAT+GGG | - | chr8.3:53762249-53762268 | None:intergenic | 40.0% | |
| TTGAACATCCCTAACAAGCA+TGG | - | chr8.3:53762250-53762269 | None:intergenic | 40.0% | |
| ! | CAAGCAAGGTTTTACAACTC+GGG | + | chr8.3:53760476-53760495 | MS.gene59859:intron | 40.0% |
| ! | CCAAGCAAGGTTTTACAACT+CGG | + | chr8.3:53760475-53760494 | MS.gene59859:intron | 40.0% |
| ! | CTAACAAGCATGGGTTAACA+TGG | - | chr8.3:53762240-53762259 | None:intergenic | 40.0% |
| ! | GGTTAACATGGGTTGAGTTT+AGG | - | chr8.3:53762228-53762247 | None:intergenic | 40.0% |
| ! | GTAGAGAAGCACAACATACA+TGG | - | chr8.3:53761952-53761971 | None:intergenic | 40.0% |
| !! | AAAGTGTTGGAGCAACAAAG+TGG | - | chr8.3:53763136-53763155 | None:intergenic | 40.0% |
| !! | TCATCTTTTCAAGGGGGAAA+AGG | + | chr8.3:53763493-53763512 | MS.gene59859:CDS | 40.0% |
| !! | TGATGGTCATCTTTTCAAGG+GGG | + | chr8.3:53763487-53763506 | MS.gene59859:CDS | 40.0% |
| ACATGCGGTTCAGTTTGGTT+TGG | - | chr8.3:53762562-53762581 | None:intergenic | 45.0% | |
| ACATTATGGAGTCCCAAGCA+AGG | + | chr8.3:53760462-53760481 | MS.gene59859:intron | 45.0% | |
| ACTAGGGATCAAATCACCTG+GGG | + | chr8.3:53760137-53760156 | MS.gene59859:CDS | 45.0% | |
| AGTTTGAAGAACTTCTCCCC+AGG | - | chr8.3:53760156-53760175 | None:intergenic | 45.0% | |
| CACAAACTTTGTGCACTTCG+TGG | - | chr8.3:53760194-53760213 | None:intergenic | 45.0% | |
| CATCATGCCAAGCTTCATGA+AGG | + | chr8.3:53760222-53760241 | MS.gene59859:CDS | 45.0% | |
| CCGAGTTGTAAAACCTTGCT+TGG | - | chr8.3:53760478-53760497 | None:intergenic | 45.0% | |
| GAACTAGGGATCAAATCACC+TGG | + | chr8.3:53760135-53760154 | MS.gene59859:CDS | 45.0% | |
| GGTACACACATGCAATGAGA+AGG | + | chr8.3:53763250-53763269 | MS.gene59859:CDS | 45.0% | |
| GTTCGCGATGTGGTTTGAAT+TGG | - | chr8.3:53762623-53762642 | None:intergenic | 45.0% | |
| TGACATAACAACAGACGGTG+AGG | + | chr8.3:53763229-53763248 | MS.gene59859:intron | 45.0% | |
| TTGCTTGGGACTCCATAATG+TGG | - | chr8.3:53760463-53760482 | None:intergenic | 45.0% | |
| ! | TGCTTCTCTACCATCCGTTT+TGG | + | chr8.3:53761961-53761980 | MS.gene59859:intron | 45.0% |
| !! | AATTTATAATATTTAGAAAA+GGG | + | chr8.3:53761325-53761344 | MS.gene59859:intron | 5.0% |
| !! | TAATTTATAATATTTAGAAA+AGG | + | chr8.3:53761324-53761343 | MS.gene59859:intron | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | + | chr8.3:53761820-53761839 | MS.gene59859:intron | 5.0% |
| !!! | ATTTTTAATATTTTATAATG+AGG | + | chr8.3:53760385-53760404 | MS.gene59859:intron | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | + | chr8.3:53761821-53761840 | MS.gene59859:intron | 5.0% |
| !!! | TTTTATATAATTTTAATCTT+AGG | - | chr8.3:53760564-53760583 | None:intergenic | 5.0% |
| !!! | TTTTTTTGTTTTTTTTAAAT+CGG | - | chr8.3:53762683-53762702 | None:intergenic | 5.0% |
| AGCAGAACTTCCATCAGCCT+TGG | - | chr8.3:53763375-53763394 | None:intergenic | 50.0% | |
| AGGTAGTCCATCCAGCCATT+TGG | - | chr8.3:53763446-53763465 | None:intergenic | 50.0% | |
| CAGAGTCAGACAAACCCTCT+GGG | + | chr8.3:53761282-53761301 | MS.gene59859:intron | 50.0% | |
| GAGGGTTTGTCTGACTCTGA+TGG | - | chr8.3:53761281-53761300 | None:intergenic | 50.0% | |
| TCAGAGTCAGACAAACCCTC+TGG | + | chr8.3:53761281-53761300 | MS.gene59859:intron | 50.0% | |
| TGATGCTCCAAATGGCTGGA+TGG | + | chr8.3:53763436-53763455 | MS.gene59859:CDS | 50.0% | |
| ! | CTACTAGGGTGTTCGCGATG+TGG | - | chr8.3:53762633-53762652 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 53760108 | 53763526 | 53760108 | ID=MS.gene59859 |
| chr8.3 | mRNA | 53760108 | 53763526 | 53760108 | ID=MS.gene59859.t1;Parent=MS.gene59859 |
| chr8.3 | exon | 53760108 | 53760294 | 53760108 | ID=MS.gene59859.t1.exon1;Parent=MS.gene59859.t1 |
| chr8.3 | CDS | 53760108 | 53760294 | 53760108 | ID=cds.MS.gene59859.t1;Parent=MS.gene59859.t1 |
| chr8.3 | exon | 53763243 | 53763526 | 53763243 | ID=MS.gene59859.t1.exon2;Parent=MS.gene59859.t1 |
| chr8.3 | CDS | 53763243 | 53763526 | 53763243 | ID=cds.MS.gene59859.t1;Parent=MS.gene59859.t1 |
| Gene Sequence |
| Protein sequence |
