Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77761.t1 | XP_013445245.1 | 89.1 | 156 | 17 | 0 | 1 | 156 | 1 | 156 | 3.10E-77 | 297.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77761.t1 | Q941R6 | 34.6 | 153 | 96 | 4 | 3 | 152 | 20 | 171 | 3.3e-19 | 96.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77761.t1 | A0A072TPY0 | 89.1 | 156 | 17 | 0 | 1 | 156 | 1 | 156 | 2.2e-77 | 297.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77761.t1 | MTR_8g045665 | 89.103 | 156 | 17 | 0 | 1 | 156 | 1 | 156 | 6.86e-102 | 289 |
| MS.gene77761.t1 | MTR_8g045695 | 89.744 | 156 | 16 | 0 | 1 | 156 | 1 | 156 | 9.96e-102 | 288 |
| MS.gene77761.t1 | MTR_8g045640 | 85.256 | 156 | 23 | 0 | 1 | 156 | 1 | 156 | 1.64e-96 | 275 |
| MS.gene77761.t1 | MTR_8g045735 | 83.871 | 155 | 25 | 0 | 1 | 155 | 1 | 155 | 1.72e-96 | 275 |
| MS.gene77761.t1 | MTR_8g045560 | 83.974 | 156 | 25 | 0 | 1 | 156 | 1 | 156 | 3.79e-95 | 272 |
| MS.gene77761.t1 | MTR_8g045520 | 77.070 | 157 | 35 | 1 | 1 | 156 | 1 | 157 | 2.13e-85 | 247 |
| MS.gene77761.t1 | MTR_8g045400 | 71.975 | 157 | 42 | 2 | 1 | 156 | 1 | 156 | 1.70e-79 | 232 |
| MS.gene77761.t1 | MTR_8g045490 | 71.895 | 153 | 42 | 1 | 1 | 152 | 1 | 153 | 6.86e-79 | 231 |
| MS.gene77761.t1 | MTR_8g045570 | 71.053 | 152 | 43 | 1 | 1 | 151 | 1 | 152 | 5.73e-77 | 226 |
| MS.gene77761.t1 | MTR_8g045555 | 67.763 | 152 | 48 | 1 | 1 | 151 | 1 | 152 | 1.62e-74 | 219 |
| MS.gene77761.t1 | MTR_8g045300 | 65.806 | 155 | 52 | 1 | 1 | 154 | 1 | 155 | 2.80e-73 | 216 |
| MS.gene77761.t1 | MTR_1g030810 | 42.484 | 153 | 84 | 3 | 1 | 150 | 1 | 152 | 4.92e-37 | 124 |
| MS.gene77761.t1 | MTR_1g030820 | 39.216 | 153 | 89 | 3 | 1 | 150 | 1 | 152 | 6.85e-36 | 122 |
| MS.gene77761.t1 | MTR_1g030840 | 40.385 | 156 | 84 | 5 | 1 | 148 | 1 | 155 | 8.59e-29 | 104 |
| MS.gene77761.t1 | MTR_8g012550 | 34.211 | 152 | 92 | 6 | 6 | 153 | 8 | 155 | 3.97e-25 | 94.7 |
| MS.gene77761.t1 | MTR_1g031640 | 37.838 | 148 | 82 | 6 | 7 | 151 | 7 | 147 | 7.60e-21 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77761.t1 | AT5G28010 | 34.641 | 153 | 96 | 4 | 3 | 152 | 15 | 166 | 1.37e-24 | 93.6 |
| MS.gene77761.t1 | AT5G28010 | 34.641 | 153 | 96 | 4 | 3 | 152 | 15 | 166 | 1.37e-24 | 93.6 |
| MS.gene77761.t1 | AT1G70840 | 34.641 | 153 | 96 | 4 | 3 | 152 | 20 | 171 | 3.18e-23 | 90.1 |
| MS.gene77761.t1 | AT1G70890 | 35.948 | 153 | 94 | 4 | 3 | 152 | 7 | 158 | 7.69e-23 | 89.0 |
| MS.gene77761.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 22 | 173 | 2.20e-22 | 88.2 |
| MS.gene77761.t1 | AT1G70830 | 35.065 | 154 | 96 | 4 | 3 | 153 | 22 | 174 | 3.11e-22 | 88.2 |
| MS.gene77761.t1 | AT5G28000 | 33.333 | 153 | 98 | 4 | 3 | 152 | 13 | 164 | 8.78e-22 | 86.3 |
| MS.gene77761.t1 | AT1G70830 | 35.065 | 154 | 96 | 4 | 3 | 153 | 22 | 174 | 1.76e-21 | 87.4 |
| MS.gene77761.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 137 | 288 | 2.49e-21 | 87.8 |
| MS.gene77761.t1 | AT1G70830 | 32.990 | 97 | 63 | 2 | 59 | 153 | 31 | 127 | 4.64e-11 | 59.7 |
| MS.gene77761.t1 | AT1G70830 | 35.065 | 154 | 96 | 4 | 3 | 153 | 22 | 174 | 3.18e-21 | 88.2 |
| MS.gene77761.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 184 | 335 | 7.28e-21 | 87.0 |
| MS.gene77761.t1 | AT1G70850 | 36.364 | 143 | 87 | 4 | 13 | 152 | 175 | 316 | 1.75e-20 | 85.9 |
| MS.gene77761.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 7.14e-20 | 84.3 |
| MS.gene77761.t1 | AT1G70850 | 36.364 | 143 | 87 | 4 | 13 | 152 | 175 | 316 | 1.75e-20 | 85.9 |
| MS.gene77761.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 7.14e-20 | 84.3 |
| MS.gene77761.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 3.77e-20 | 83.6 |
| MS.gene77761.t1 | AT4G23670 | 32.680 | 153 | 99 | 4 | 1 | 151 | 1 | 151 | 7.59e-20 | 80.9 |
| MS.gene77761.t1 | AT1G70870 | 42.268 | 97 | 54 | 2 | 55 | 150 | 43 | 138 | 9.73e-19 | 77.8 |
| MS.gene77761.t1 | AT1G14930 | 28.571 | 154 | 106 | 4 | 1 | 152 | 1 | 152 | 2.88e-18 | 77.0 |
| MS.gene77761.t1 | AT1G23120 | 30.496 | 141 | 92 | 4 | 10 | 149 | 10 | 145 | 6.34e-18 | 75.9 |
| MS.gene77761.t1 | AT1G23120 | 30.496 | 141 | 92 | 4 | 10 | 149 | 60 | 195 | 1.95e-17 | 75.9 |
| MS.gene77761.t1 | AT2G01520 | 28.105 | 153 | 106 | 4 | 1 | 151 | 1 | 151 | 2.30e-17 | 74.3 |
| MS.gene77761.t1 | AT1G24020 | 32.903 | 155 | 95 | 4 | 1 | 150 | 1 | 151 | 7.29e-17 | 73.2 |
| MS.gene77761.t1 | AT1G24020 | 32.903 | 155 | 95 | 4 | 1 | 150 | 1 | 151 | 7.29e-17 | 73.2 |
| MS.gene77761.t1 | AT1G70880 | 30.719 | 153 | 102 | 4 | 3 | 152 | 8 | 159 | 3.72e-16 | 71.6 |
| MS.gene77761.t1 | AT1G23130 | 28.188 | 149 | 104 | 3 | 3 | 149 | 10 | 157 | 4.95e-16 | 71.2 |
| MS.gene77761.t1 | AT1G14940 | 27.273 | 154 | 108 | 4 | 1 | 152 | 1 | 152 | 2.88e-15 | 68.9 |
| MS.gene77761.t1 | AT4G14060 | 27.451 | 153 | 107 | 4 | 1 | 151 | 1 | 151 | 4.40e-15 | 68.6 |
| MS.gene77761.t1 | AT2G01530 | 28.105 | 153 | 106 | 4 | 1 | 151 | 1 | 151 | 4.54e-15 | 68.6 |
| MS.gene77761.t1 | AT4G23680 | 27.632 | 152 | 106 | 4 | 1 | 150 | 1 | 150 | 4.74e-15 | 68.6 |
| MS.gene77761.t1 | AT1G30990 | 28.477 | 151 | 103 | 5 | 1 | 149 | 1 | 148 | 2.09e-14 | 66.6 |
| MS.gene77761.t1 | AT1G14950 | 26.623 | 154 | 109 | 4 | 1 | 152 | 1 | 152 | 2.15e-14 | 66.6 |
| MS.gene77761.t1 | AT3G26460 | 28.105 | 153 | 107 | 3 | 1 | 151 | 1 | 152 | 1.67e-13 | 64.3 |
| MS.gene77761.t1 | AT1G35310 | 28.777 | 139 | 95 | 4 | 13 | 149 | 12 | 148 | 1.14e-12 | 62.0 |
| MS.gene77761.t1 | AT1G14960 | 25.161 | 155 | 112 | 4 | 1 | 153 | 1 | 153 | 2.48e-12 | 61.2 |
| MS.gene77761.t1 | AT3G26450 | 23.529 | 153 | 114 | 3 | 1 | 151 | 1 | 152 | 3.27e-11 | 58.5 |
Find 29 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACATTGGACTTATGTCAT+AGG | 0.403651 | 8.1:+59804018 | MS.gene77761:CDS |
| TGGAGATATTGAAAGCTATA+AGG | 0.405224 | 8.1:+59807340 | MS.gene77761:CDS |
| CACAAACTTTGTGCACTTCG+TGG | 0.405990 | 8.1:-59803936 | None:intergenic |
| ATGGAAGTTCTGCTGTTAGA+TGG | 0.407851 | 8.1:+59807399 | MS.gene77761:CDS |
| AAGATCACTTACAAGCTGTT+TGG | 0.418393 | 8.1:+59807317 | MS.gene77761:CDS |
| ATCTTCACCTTCATGAAGCT+TGG | 0.441586 | 8.1:-59803974 | None:intergenic |
| GGGAAACTTATCACTGAACT+TGG | 0.445682 | 8.1:+59803865 | MS.gene77761:CDS |
| AGGTAGTCCATCCAGCCATT+TGG | 0.456227 | 8.1:-59807461 | None:intergenic |
| AAAAGCACTAGAGATATTGA+TGG | 0.477335 | 8.1:+59807488 | MS.gene77761:CDS |
| ATCACTTACAAGCTGTTTGG+TGG | 0.478540 | 8.1:+59807320 | MS.gene77761:CDS |
| TTTCCAAATATGGTGCTCGC+TGG | 0.484997 | 8.1:+59803844 | None:intergenic |
| AGCTTCATGAAGGTGAAGAT+TGG | 0.494334 | 8.1:+59803977 | MS.gene77761:CDS |
| TTCCAAATATGGTGCTCGCT+GGG | 0.503897 | 8.1:+59803845 | None:intergenic |
| GAGGATATTGATACTCCAAA+TGG | 0.508694 | 8.1:+59807446 | MS.gene77761:CDS |
| AGATTGGCATCACAATGATT+CGG | 0.515908 | 8.1:+59803993 | MS.gene77761:CDS |
| AGCAGAACTTCCATCAGCCT+TGG | 0.534921 | 8.1:-59807390 | None:intergenic |
| ACAATGATTCGGTTAAACAT+TGG | 0.540448 | 8.1:+59804004 | MS.gene77761:CDS |
| ATATTGATACTCCAAATGGC+TGG | 0.546067 | 8.1:+59807450 | MS.gene77761:CDS |
| GAACTTGGGATCAAATCACC+TGG | 0.553911 | 8.1:+59803880 | MS.gene77761:CDS |
| TGATACTCCAAATGGCTGGA+TGG | 0.568648 | 8.1:+59807454 | MS.gene77761:CDS |
| AACTTGGGATCAAATCACCT+GGG | 0.581574 | 8.1:+59803881 | MS.gene77761:CDS |
| CATCATGCCAAGCTTCATGA+AGG | 0.583004 | 8.1:+59803967 | MS.gene77761:CDS |
| GAAGTGCTTACCAAGGCTGA+TGG | 0.599893 | 8.1:+59807380 | MS.gene77761:CDS |
| GGAAACTTATCACTGAACTT+GGG | 0.624297 | 8.1:+59803866 | MS.gene77761:CDS |
| TGAATATGAGAAGAACAATG+AGG | 0.650125 | 8.1:+59807427 | MS.gene77761:CDS |
| GGTACACACATGCATTGAGA+AGG | 0.678141 | 8.1:+59807268 | MS.gene77761:CDS |
| GGACATAACAACAGACGGTG+AGG | 0.687195 | 8.1:+59807247 | MS.gene77761:intron |
| CATCTTAGAAGTGCTTACCA+AGG | 0.696732 | 8.1:+59807373 | MS.gene77761:CDS |
| ACTTGGGATCAAATCACCTG+GGG | 0.705917 | 8.1:+59803882 | MS.gene77761:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTATAATATTTAAAAA+GGG | + | chr8.1:59804574-59804593 | MS.gene77761:intron | 0.0% |
| !! | TTAATTTATAATATTTAAAA+AGG | + | chr8.1:59804573-59804592 | MS.gene77761:intron | 0.0% |
| !!! | TTTTATATAATTTTAATTTT+AGG | - | chr8.1:59804736-59804755 | None:intergenic | 0.0% |
| !! | ATTATAAATTAAGTGATTAT+AGG | - | chr8.1:59805497-59805516 | None:intergenic | 10.0% |
| !! | TAAAAAAAAAGATATTGATA+AGG | - | chr8.1:59806612-59806631 | None:intergenic | 10.0% |
| !!! | CGTATTTAATATTTTTTTAA+AGG | + | chr8.1:59807186-59807205 | MS.gene77761:intron | 10.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr8.1:59806861-59806880 | None:intergenic | 15.0% |
| !! | AATAATATAGATTAAGTTAG+TGG | - | chr8.1:59806119-59806138 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr8.1:59806860-59806879 | MS.gene77761:intron | 15.0% |
| !! | TAGAAACACAATTATTATTA+GGG | - | chr8.1:59804475-59804494 | None:intergenic | 15.0% |
| !! | TTAGAAACACAATTATTATT+AGG | - | chr8.1:59804476-59804495 | None:intergenic | 15.0% |
| !!! | AGTATATGGTTTTATTTTTA+AGG | - | chr8.1:59806681-59806700 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | - | chr8.1:59806734-59806753 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr8.1:59806837-59806856 | None:intergenic | 15.0% |
| !!! | TTAAATAGTCTTATACATTA+GGG | - | chr8.1:59806646-59806665 | None:intergenic | 15.0% |
| !!! | TTTAAAAAAACACTTTCTTT+TGG | - | chr8.1:59805226-59805245 | None:intergenic | 15.0% |
| !!! | TTTAAATAGTCTTATACATT+AGG | - | chr8.1:59806647-59806666 | None:intergenic | 15.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr8.1:59806851-59806870 | MS.gene77761:intron | 20.0% |
| !! | AAATTAGTTGTACTAGAAAT+GGG | - | chr8.1:59807016-59807035 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr8.1:59806774-59806793 | None:intergenic | 20.0% |
| !! | ATAATATTTAAAAAGGGAAG+AGG | + | chr8.1:59804580-59804599 | MS.gene77761:intron | 20.0% |
| !! | ATGCTTGTTCAATAAAATTA+GGG | + | chr8.1:59805660-59805679 | MS.gene77761:intron | 20.0% |
| !! | ATGTTATTGTATAAATAGTG+GGG | - | chr8.1:59804133-59804152 | None:intergenic | 20.0% |
| !! | GATGTTATTGTATAAATAGT+GGG | - | chr8.1:59804134-59804153 | None:intergenic | 20.0% |
| !! | TGATGTTATTGTATAAATAG+TGG | - | chr8.1:59804135-59804154 | None:intergenic | 20.0% |
| !! | TTAAACATAACTCTTCATTA+TGG | - | chr8.1:59804855-59804874 | None:intergenic | 20.0% |
| !! | TTATGTCATAGGTAATAATA+AGG | + | chr8.1:59804029-59804048 | MS.gene77761:intron | 20.0% |
| !!! | AACTAGTTTATTTTCTAGAT+AGG | - | chr8.1:59804990-59805009 | None:intergenic | 20.0% |
| !!! | CAAAAATATTTGGTTTTTTG+CGG | - | chr8.1:59805926-59805945 | None:intergenic | 20.0% |
| !!! | TAATATTTACTTTTACGGTT+TGG | - | chr8.1:59806022-59806041 | None:intergenic | 20.0% |
| !!! | TATTAAATACGTTTTCTCAA+AGG | - | chr8.1:59807177-59807196 | None:intergenic | 20.0% |
| !!! | TTATCGATTTTATTTCAGAT+TGG | - | chr8.1:59805743-59805762 | None:intergenic | 20.0% |
| !!! | TTCTTTTGGATCATTTTTTT+GGG | - | chr8.1:59805212-59805231 | None:intergenic | 20.0% |
| !!! | TTTCTTTTGGATCATTTTTT+TGG | - | chr8.1:59805213-59805232 | None:intergenic | 20.0% |
| !!! | TTTTGCAGTTTTCAATTTTT+TGG | + | chr8.1:59805775-59805794 | MS.gene77761:intron | 20.0% |
| ! | AAACAATAAAACTACCAAAC+CGG | - | chr8.1:59805607-59805626 | None:intergenic | 25.0% |
| ! | AAACTATTCAAACTCAACTA+GGG | - | chr8.1:59806322-59806341 | None:intergenic | 25.0% |
| ! | AATGATTAAGAGAAAGAGAA+TGG | - | chr8.1:59806894-59806913 | None:intergenic | 25.0% |
| ! | ATAATATTTAGAAAAGGGAG+AGG | + | chr8.1:59805512-59805531 | MS.gene77761:intron | 25.0% |
| ! | CAAATTAGTTGTACTAGAAA+TGG | - | chr8.1:59807017-59807036 | None:intergenic | 25.0% |
| ! | CAATCACATCCAAAAATATT+TGG | - | chr8.1:59805936-59805955 | None:intergenic | 25.0% |
| ! | CATGCTTGTTCAATAAAATT+AGG | + | chr8.1:59805659-59805678 | MS.gene77761:intron | 25.0% |
| ! | GATACTTAAAAACGTAAACT+CGG | + | chr8.1:59805385-59805404 | MS.gene77761:intron | 25.0% |
| ! | TAATAATGTTTGCAACATCT+TGG | - | chr8.1:59804339-59804358 | None:intergenic | 25.0% |
| ! | TTCGAAATAAAAATCACATG+TGG | - | chr8.1:59806257-59806276 | None:intergenic | 25.0% |
| !! | AGTGTGATTTTATAACTTCA+AGG | - | chr8.1:59806439-59806458 | None:intergenic | 25.0% |
| !! | CGCAAAAAACCAAATATTTT+TGG | + | chr8.1:59805924-59805943 | MS.gene77761:intron | 25.0% |
| !! | TGACTATTCTGAAAAATAGT+CGG | - | chr8.1:59806218-59806237 | None:intergenic | 25.0% |
| !! | TTTACGATTCGATTTTACAT+AGG | - | chr8.1:59804686-59804705 | None:intergenic | 25.0% |
| !! | TTTTGCGGTTTTCAATTTTT+TGG | - | chr8.1:59805911-59805930 | None:intergenic | 25.0% |
| !!! | CAAATATTTTTGGATGTGAT+TGG | + | chr8.1:59805934-59805953 | MS.gene77761:intron | 25.0% |
| !!! | GAAGGTAAACTCATTTTTTT+TGG | - | chr8.1:59805349-59805368 | None:intergenic | 25.0% |
| !!! | GAGAGGTATATAATTTTACA+AGG | + | chr8.1:59805529-59805548 | MS.gene77761:intron | 25.0% |
| !!! | GGATCGATTTTATTTCAAAT+TGG | + | chr8.1:59805796-59805815 | MS.gene77761:intron | 25.0% |
| !!! | TGCTTTTTTGGATGATTTTT+TGG | - | chr8.1:59804937-59804956 | None:intergenic | 25.0% |
| !!! | TTTTTGGATGATTTTTTGGA+TGG | - | chr8.1:59804933-59804952 | None:intergenic | 25.0% |
| AAACATTGGACTTATGTCAT+AGG | + | chr8.1:59804018-59804037 | MS.gene77761:CDS | 30.0% | |
| AACATAACTCTTCATTATGG+TGG | - | chr8.1:59804852-59804871 | None:intergenic | 30.0% | |
| CAACATTAGAACCAAATACA+TGG | + | chr8.1:59805114-59805133 | MS.gene77761:intron | 30.0% | |
| CACCAAAAAAATTACTACCT+CGG | - | chr8.1:59807136-59807155 | None:intergenic | 30.0% | |
| CTAGTTAACAAGGTGAAATT+GGG | - | chr8.1:59805637-59805656 | None:intergenic | 30.0% | |
| GAAACTATTCAAACTCAACT+AGG | - | chr8.1:59806323-59806342 | None:intergenic | 30.0% | |
| GACATTAATTTCAGTACCTT+GGG | + | chr8.1:59805151-59805170 | MS.gene77761:intron | 30.0% | |
| TAAACGTAAACTCGTAAACA+CGG | + | chr8.1:59805242-59805261 | MS.gene77761:intron | 30.0% | |
| TACATAGGTAAAACAAGTTG+AGG | - | chr8.1:59804671-59804690 | None:intergenic | 30.0% | |
| TGAATATGAGAAGAACAATG+AGG | + | chr8.1:59807427-59807446 | MS.gene77761:CDS | 30.0% | |
| TGGAGATATTGAAAGCTATA+AGG | + | chr8.1:59807340-59807359 | MS.gene77761:CDS | 30.0% | |
| TGTACTAGAAATGGGTATAT+TGG | - | chr8.1:59807008-59807027 | None:intergenic | 30.0% | |
| TTATTATTAGGGAGCTTCTA+CGG | - | chr8.1:59804464-59804483 | None:intergenic | 30.0% | |
| ! | CTAGTACAACTAATTTGTCT+TGG | + | chr8.1:59807020-59807039 | MS.gene77761:intron | 30.0% |
| ! | GATGAATTGATGATACTATG+AGG | - | chr8.1:59804168-59804187 | None:intergenic | 30.0% |
| ! | GTAGAGAAGCACAAAATATA+TGG | - | chr8.1:59805581-59805600 | None:intergenic | 30.0% |
| ! | TAAAAAGCATGGGTTAACAT+GGG | - | chr8.1:59805849-59805868 | None:intergenic | 30.0% |
| ! | TGAACATCTCTAAAAAGCAT+GGG | - | chr8.1:59805859-59805878 | None:intergenic | 30.0% |
| ! | TGCGTTATTATGTTACTTGT+TGG | + | chr8.1:59806075-59806094 | MS.gene77761:intron | 30.0% |
| ! | TTGAACATCTCTAAAAAGCA+TGG | - | chr8.1:59805860-59805879 | None:intergenic | 30.0% |
| !! | AAAAGCACTAGAGATATTGA+TGG | + | chr8.1:59807488-59807507 | MS.gene77761:CDS | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr8.1:59806943-59806962 | MS.gene77761:intron | 30.0% |
| !! | ACAATGATTCGGTTAAACAT+TGG | + | chr8.1:59804004-59804023 | MS.gene77761:CDS | 30.0% |
| !! | ATTGATGGTCATCTTTTCAA+GGG | + | chr8.1:59807503-59807522 | MS.gene77761:CDS | 30.0% |
| !! | GGAACGATTTTATTTCAGAT+TGG | - | chr8.1:59805890-59805909 | None:intergenic | 30.0% |
| !! | GTTGTTTTGTAAAAACCGTT+AGG | + | chr8.1:59805959-59805978 | MS.gene77761:intron | 30.0% |
| !! | TATTGATGGTCATCTTTTCA+AGG | + | chr8.1:59807502-59807521 | MS.gene77761:CDS | 30.0% |
| !! | TATTTTTGTGTCAAGATGTG+AGG | - | chr8.1:59806508-59806527 | None:intergenic | 30.0% |
| !!! | AACTTGTGAACTTGCTTTTT+TGG | - | chr8.1:59804949-59804968 | None:intergenic | 30.0% |
| !!! | AGTCATGAGAATGACTTTTT+TGG | + | chr8.1:59804067-59804086 | MS.gene77761:intron | 30.0% |
| !!! | CAATTCTTTTTTTAAGCCCA+AGG | - | chr8.1:59805170-59805189 | None:intergenic | 30.0% |
| !!! | TACCGAGGTAGTAATTTTTT+TGG | + | chr8.1:59807131-59807150 | MS.gene77761:intron | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr8.1:59806942-59806961 | None:intergenic | 30.0% |
| !!! | TTTACTTTTACGGTTTGGTT+CGG | - | chr8.1:59806017-59806036 | None:intergenic | 30.0% |
| AAATCACATGTGGTTCAGTT+CGG | - | chr8.1:59806247-59806266 | None:intergenic | 35.0% | |
| AAGATCACTTACAAGCTGTT+TGG | + | chr8.1:59807317-59807336 | MS.gene77761:CDS | 35.0% | |
| AATAAAACTACCAAACCGGA+TGG | - | chr8.1:59805603-59805622 | None:intergenic | 35.0% | |
| ACTCTTGTAAAAAGTTACCG+AGG | + | chr8.1:59807116-59807135 | MS.gene77761:intron | 35.0% | |
| AGATTGGCATCACAATGATT+CGG | + | chr8.1:59803993-59804012 | MS.gene77761:CDS | 35.0% | |
| ATATTGATACTCCAAATGGC+TGG | + | chr8.1:59807450-59807469 | MS.gene77761:CDS | 35.0% | |
| CCAATTTCACCTTGTTAACT+AGG | + | chr8.1:59805635-59805654 | MS.gene77761:intron | 35.0% | |
| CCTAGTTAACAAGGTGAAAT+TGG | - | chr8.1:59805638-59805657 | None:intergenic | 35.0% | |
| CCTTAAGTGTTACACTTTGT+GGG | - | chr8.1:59804248-59804267 | None:intergenic | 35.0% | |
| CGAATTGTAAAACCTTGCTT+GGG | - | chr8.1:59804640-59804659 | None:intergenic | 35.0% | |
| CGACATTAATTTCAGTACCT+TGG | + | chr8.1:59805150-59805169 | MS.gene77761:intron | 35.0% | |
| CTTAAGTGTTACACTTTGTG+GGG | - | chr8.1:59804247-59804266 | None:intergenic | 35.0% | |
| GAAATTCGATCAGATCCTAA+CGG | - | chr8.1:59805977-59805996 | None:intergenic | 35.0% | |
| GAGGATATTGATACTCCAAA+TGG | + | chr8.1:59807446-59807465 | MS.gene77761:CDS | 35.0% | |
| GAGTTAACACGTGTTAAACT+CGG | - | chr8.1:59805297-59805316 | None:intergenic | 35.0% | |
| GAGTTTAACACGTGTTAACT+CGG | + | chr8.1:59805296-59805315 | MS.gene77761:intron | 35.0% | |
| GCTATTGATATGAATTGCCT+CGG | + | chr8.1:59807226-59807245 | MS.gene77761:intron | 35.0% | |
| GGAAACTTATCACTGAACTT+GGG | + | chr8.1:59803866-59803885 | MS.gene77761:CDS | 35.0% | |
| GTTGAAAACACTTTATCGTC+TGG | - | chr8.1:59805098-59805117 | None:intergenic | 35.0% | |
| TCAAAAACGTGTTAACTCGA+AGG | - | chr8.1:59805367-59805386 | None:intergenic | 35.0% | |
| TCGAATTGTAAAACCTTGCT+TGG | - | chr8.1:59804641-59804660 | None:intergenic | 35.0% | |
| ! | ACGAGTTAACACTTGATTTG+TGG | + | chr8.1:59805416-59805435 | MS.gene77761:intron | 35.0% |
| ! | CTAAAAAGCATGGGTTAACA+TGG | - | chr8.1:59805850-59805869 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr8.1:59806812-59806831 | None:intergenic | 35.0% |
| ! | GTTAACATGGGTTGAGTTTA+GGG | - | chr8.1:59805837-59805856 | None:intergenic | 35.0% |
| ! | TATCTCTAGTGCTTTTGCTA+AGG | - | chr8.1:59807484-59807503 | None:intergenic | 35.0% |
| ! | TCGGTAACTTTTTACAAGAG+TGG | - | chr8.1:59807117-59807136 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr8.1:59806808-59806827 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr8.1:59806708-59806727 | None:intergenic | 35.0% |
| !! | ACACTTGATTTGTGGAAAAC+TGG | + | chr8.1:59805424-59805443 | MS.gene77761:intron | 35.0% |
| !! | ATTATAGGTTCTAAACCCAG+AGG | - | chr8.1:59805482-59805501 | None:intergenic | 35.0% |
| !! | GACTCTGATGGATTAAACTT+GGG | - | chr8.1:59805451-59805470 | None:intergenic | 35.0% |
| !! | TGACTCTGATGGATTAAACT+TGG | - | chr8.1:59805452-59805471 | None:intergenic | 35.0% |
| !! | TTATAGGTTCTAAACCCAGA+GGG | - | chr8.1:59805481-59805500 | None:intergenic | 35.0% |
| !! | TTGATGGTCATCTTTTCAAG+GGG | + | chr8.1:59807504-59807523 | MS.gene77761:CDS | 35.0% |
| AACTTGGGATCAAATCACCT+GGG | + | chr8.1:59803881-59803900 | MS.gene77761:CDS | 40.0% | |
| AGCTTCATGAAGGTGAAGAT+TGG | + | chr8.1:59803977-59803996 | MS.gene77761:CDS | 40.0% | |
| AGTTTGAAAAACTTCTCCCC+AGG | - | chr8.1:59803901-59803920 | None:intergenic | 40.0% | |
| ATCACTTACAAGCTGTTTGG+TGG | + | chr8.1:59807320-59807339 | MS.gene77761:CDS | 40.0% | |
| ATCTTCACCTTCATGAAGCT+TGG | - | chr8.1:59803977-59803996 | None:intergenic | 40.0% | |
| ATGGAAGTTCTGCTGTTAGA+TGG | + | chr8.1:59807399-59807418 | MS.gene77761:CDS | 40.0% | |
| CAAGCATGTCCTAGTTAACA+AGG | - | chr8.1:59805647-59805666 | None:intergenic | 40.0% | |
| CACTAGAGAAGACCACATTA+TGG | + | chr8.1:59804611-59804630 | MS.gene77761:intron | 40.0% | |
| CCCACAAAGTGTAACACTTA+AGG | + | chr8.1:59804245-59804264 | MS.gene77761:intron | 40.0% | |
| GCCTTAAGTGTTACACTTTG+TGG | - | chr8.1:59804249-59804268 | None:intergenic | 40.0% | |
| GGGAAACTTATCACTGAACT+TGG | + | chr8.1:59803865-59803884 | MS.gene77761:CDS | 40.0% | |
| GTGAGTTCAAGCCATGTATT+TGG | - | chr8.1:59805128-59805147 | None:intergenic | 40.0% | |
| TCGGTAAACTCGTGTAAACT+CGG | - | chr8.1:59805278-59805297 | None:intergenic | 40.0% | |
| TTGCAACATCTTGGACTTAC+AGG | - | chr8.1:59804330-59804349 | None:intergenic | 40.0% | |
| ! | GGTTAACATGGGTTGAGTTT+AGG | - | chr8.1:59805838-59805857 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr8.1:59806809-59806828 | None:intergenic | 40.0% |
| ! | TTTGAAACGGAGGGAGTATA+TGG | - | chr8.1:59806695-59806714 | None:intergenic | 40.0% |
| ! | TTTTGTGCTTCTCTACCATC+CGG | + | chr8.1:59805585-59805604 | MS.gene77761:intron | 40.0% |
| !! | CATCTTAGAAGTGCTTACCA+AGG | + | chr8.1:59807373-59807392 | MS.gene77761:CDS | 40.0% |
| !! | TCATCTTTTCAAGGGGGAAA+AGG | + | chr8.1:59807511-59807530 | MS.gene77761:CDS | 40.0% |
| !! | TGATGGTCATCTTTTCAAGG+GGG | + | chr8.1:59807505-59807524 | MS.gene77761:CDS | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr8.1:59806947-59806966 | MS.gene77761:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr8.1:59806966-59806947 | None:intergenic | 40.0% |
| ACATGTGGTTCAGTTCGGTT+TGG | - | chr8.1:59806242-59806261 | None:intergenic | 45.0% | |
| ACATTATGGAGTCCCAAGCA+AGG | + | chr8.1:59804625-59804644 | MS.gene77761:intron | 45.0% | |
| ACTTGGGATCAAATCACCTG+GGG | + | chr8.1:59803882-59803901 | MS.gene77761:CDS | 45.0% | |
| CACAAACTTTGTGCACTTCG+TGG | - | chr8.1:59803939-59803958 | None:intergenic | 45.0% | |
| CATCATGCCAAGCTTCATGA+AGG | + | chr8.1:59803967-59803986 | MS.gene77761:CDS | 45.0% | |
| CGGTAAACTCGTGTAAACTC+GGG | - | chr8.1:59805277-59805296 | None:intergenic | 45.0% | |
| GAACTTGGGATCAAATCACC+TGG | + | chr8.1:59803880-59803899 | MS.gene77761:CDS | 45.0% | |
| GGTACACACATGCATTGAGA+AGG | + | chr8.1:59807268-59807287 | MS.gene77761:CDS | 45.0% | |
| TGATACTCCAAATGGCTGGA+TGG | + | chr8.1:59807454-59807473 | MS.gene77761:CDS | 45.0% | |
| TTGCTTGGGACTCCATAATG+TGG | - | chr8.1:59804626-59804645 | None:intergenic | 45.0% | |
| ! | GGGGTGTTACGCTTATAACA+AGG | - | chr8.1:59804228-59804247 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr8.1:59806946-59806965 | MS.gene77761:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr8.1:59806965-59806946 | None:intergenic | 45.0% |
| !! | AATTTATAATATTTAGAAAA+GGG | + | chr8.1:59805507-59805526 | MS.gene77761:intron | 5.0% |
| !! | TAATTTATAATATTTAGAAA+AGG | + | chr8.1:59805506-59805525 | MS.gene77761:intron | 5.0% |
| !!! | ATAAAAAATTTATTTTAGAT+TGG | - | chr8.1:59805701-59805720 | None:intergenic | 5.0% |
| !!! | ATTATTAATATTTACTTTTA+CGG | - | chr8.1:59806027-59806046 | None:intergenic | 5.0% |
| !!! | TTTTTTGTTTTTTTTTTAAT+CGG | - | chr8.1:59806358-59806377 | None:intergenic | 5.0% |
| ACCGTCTGTTGTTATGTCCG+AGG | - | chr8.1:59807246-59807265 | None:intergenic | 50.0% | |
| AGCAGAACTTCCATCAGCCT+TGG | - | chr8.1:59807393-59807412 | None:intergenic | 50.0% | |
| AGGTAGTCCATCCAGCCATT+TGG | - | chr8.1:59807464-59807483 | None:intergenic | 50.0% | |
| CAGAGTCAGACAAACCCTCT+GGG | + | chr8.1:59805464-59805483 | MS.gene77761:intron | 50.0% | |
| GAGGGTTTGTCTGACTCTGA+TGG | - | chr8.1:59805463-59805482 | None:intergenic | 50.0% | |
| GCCTCGGACATAACAACAGA+CGG | + | chr8.1:59807242-59807261 | MS.gene77761:intron | 50.0% | |
| GGACATAACAACAGACGGTG+AGG | + | chr8.1:59807247-59807266 | MS.gene77761:intron | 50.0% | |
| TCAGAGTCAGACAAACCCTC+TGG | + | chr8.1:59805463-59805482 | MS.gene77761:intron | 50.0% | |
| TGCTTCTCTACCATCCGGTT+TGG | + | chr8.1:59805590-59805609 | MS.gene77761:intron | 50.0% | |
| ! | CAACTAGGGTGTTCGCGATT+TGG | - | chr8.1:59806308-59806327 | None:intergenic | 50.0% |
| ! | GAAGTGCTTACCAAGGCTGA+TGG | + | chr8.1:59807380-59807399 | MS.gene77761:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 59803853 | 59807544 | 59803853 | ID=MS.gene77761 |
| chr8.1 | mRNA | 59803853 | 59807544 | 59803853 | ID=MS.gene77761.t1;Parent=MS.gene77761 |
| chr8.1 | exon | 59803853 | 59804039 | 59803853 | ID=MS.gene77761.t1.exon1;Parent=MS.gene77761.t1 |
| chr8.1 | CDS | 59803853 | 59804039 | 59803853 | ID=cds.MS.gene77761.t1;Parent=MS.gene77761.t1 |
| chr8.1 | exon | 59807261 | 59807544 | 59807261 | ID=MS.gene77761.t1.exon2;Parent=MS.gene77761.t1 |
| chr8.1 | CDS | 59807261 | 59807544 | 59807261 | ID=cds.MS.gene77761.t1;Parent=MS.gene77761.t1 |
| Gene Sequence |
| Protein sequence |
