Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74354.t1 | XP_003628200.1 | 84.7 | 157 | 23 | 1 | 1 | 157 | 1 | 156 | 1.90E-74 | 288.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74354.t1 | Q9SSK5 | 34.7 | 150 | 95 | 3 | 3 | 150 | 7 | 155 | 3.0e-20 | 99.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74354.t1 | G7L7T5 | 84.7 | 157 | 23 | 1 | 1 | 157 | 1 | 156 | 1.3e-74 | 288.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051664 | MS.gene74354 | 0.800113 | 1.68E-48 | -1.69E-46 |
| MS.gene056169 | MS.gene74354 | 0.814102 | 1.83E-51 | -1.69E-46 |
| MS.gene056228 | MS.gene74354 | 0.812713 | 3.69E-51 | -1.69E-46 |
| MS.gene058384 | MS.gene74354 | 0.845854 | 3.13E-59 | -1.69E-46 |
| MS.gene060519 | MS.gene74354 | 0.816357 | 5.77E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74354.t1 | MTR_8g045490 | 84.713 | 157 | 23 | 1 | 1 | 157 | 1 | 156 | 5.90e-98 | 279 |
| MS.gene74354.t1 | MTR_8g045400 | 80.892 | 157 | 29 | 1 | 1 | 157 | 1 | 156 | 2.36e-92 | 265 |
| MS.gene74354.t1 | MTR_8g045520 | 77.070 | 157 | 36 | 0 | 1 | 157 | 1 | 157 | 1.82e-90 | 260 |
| MS.gene74354.t1 | MTR_8g045570 | 73.684 | 152 | 40 | 0 | 1 | 152 | 1 | 152 | 6.98e-84 | 243 |
| MS.gene74354.t1 | MTR_8g045695 | 71.338 | 157 | 44 | 1 | 1 | 157 | 1 | 156 | 6.70e-83 | 241 |
| MS.gene74354.t1 | MTR_8g045300 | 69.872 | 156 | 47 | 0 | 1 | 156 | 1 | 156 | 8.06e-81 | 236 |
| MS.gene74354.t1 | MTR_8g045555 | 71.711 | 152 | 43 | 0 | 1 | 152 | 1 | 152 | 7.13e-80 | 233 |
| MS.gene74354.t1 | MTR_8g045735 | 69.032 | 155 | 47 | 1 | 1 | 155 | 1 | 154 | 1.12e-79 | 233 |
| MS.gene74354.t1 | MTR_8g045665 | 68.153 | 157 | 49 | 1 | 1 | 157 | 1 | 156 | 6.75e-78 | 228 |
| MS.gene74354.t1 | MTR_8g045640 | 68.790 | 157 | 48 | 1 | 1 | 157 | 1 | 156 | 1.79e-77 | 227 |
| MS.gene74354.t1 | MTR_8g045560 | 66.879 | 157 | 51 | 1 | 1 | 157 | 1 | 156 | 2.32e-75 | 222 |
| MS.gene74354.t1 | MTR_1g030810 | 44.444 | 153 | 82 | 2 | 1 | 151 | 1 | 152 | 1.11e-39 | 131 |
| MS.gene74354.t1 | MTR_1g030820 | 40.523 | 153 | 88 | 2 | 1 | 151 | 1 | 152 | 7.81e-39 | 129 |
| MS.gene74354.t1 | MTR_1g030840 | 39.103 | 156 | 87 | 4 | 1 | 149 | 1 | 155 | 4.08e-29 | 105 |
| MS.gene74354.t1 | MTR_1g031640 | 37.162 | 148 | 84 | 5 | 7 | 152 | 7 | 147 | 6.60e-25 | 94.0 |
| MS.gene74354.t1 | MTR_8g012550 | 33.103 | 145 | 94 | 3 | 6 | 149 | 8 | 150 | 6.95e-25 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74354.t1 | AT5G28010 | 33.333 | 150 | 97 | 3 | 3 | 150 | 15 | 163 | 7.57e-25 | 94.4 |
| MS.gene74354.t1 | AT5G28010 | 33.333 | 150 | 97 | 3 | 3 | 150 | 15 | 163 | 7.57e-25 | 94.4 |
| MS.gene74354.t1 | AT1G70890 | 34.667 | 150 | 95 | 3 | 3 | 150 | 7 | 155 | 3.18e-24 | 92.4 |
| MS.gene74354.t1 | AT1G70840 | 32.000 | 150 | 99 | 3 | 3 | 150 | 20 | 168 | 6.19e-22 | 87.0 |
| MS.gene74354.t1 | AT1G70830 | 32.667 | 150 | 98 | 3 | 3 | 150 | 22 | 170 | 8.76e-22 | 86.7 |
| MS.gene74354.t1 | AT1G70830 | 32.667 | 150 | 98 | 3 | 3 | 150 | 22 | 170 | 1.69e-21 | 86.7 |
| MS.gene74354.t1 | AT5G28000 | 31.333 | 150 | 100 | 3 | 3 | 150 | 13 | 161 | 4.87e-21 | 84.3 |
| MS.gene74354.t1 | AT1G70830 | 32.667 | 150 | 98 | 3 | 3 | 150 | 22 | 170 | 5.71e-21 | 86.3 |
| MS.gene74354.t1 | AT1G70830 | 32.667 | 150 | 98 | 3 | 3 | 150 | 22 | 170 | 1.33e-20 | 86.7 |
| MS.gene74354.t1 | AT1G70830 | 31.333 | 150 | 100 | 3 | 3 | 150 | 184 | 332 | 4.37e-19 | 82.4 |
| MS.gene74354.t1 | AT1G70850 | 31.333 | 150 | 100 | 3 | 3 | 150 | 9 | 157 | 6.43e-20 | 83.2 |
| MS.gene74354.t1 | AT1G70870 | 41.667 | 96 | 55 | 1 | 56 | 151 | 44 | 138 | 1.38e-19 | 80.1 |
| MS.gene74354.t1 | AT1G70830 | 31.333 | 150 | 100 | 3 | 3 | 150 | 137 | 285 | 1.69e-19 | 82.8 |
| MS.gene74354.t1 | AT1G70850 | 31.333 | 150 | 100 | 3 | 3 | 150 | 9 | 157 | 1.69e-19 | 83.2 |
| MS.gene74354.t1 | AT1G70850 | 31.429 | 140 | 93 | 3 | 13 | 150 | 175 | 313 | 6.75e-18 | 79.0 |
| MS.gene74354.t1 | AT1G70850 | 31.333 | 150 | 100 | 3 | 3 | 150 | 9 | 157 | 1.69e-19 | 83.2 |
| MS.gene74354.t1 | AT1G70850 | 31.429 | 140 | 93 | 3 | 13 | 150 | 175 | 313 | 6.75e-18 | 79.0 |
| MS.gene74354.t1 | AT1G23120 | 29.167 | 144 | 97 | 3 | 7 | 150 | 7 | 145 | 1.81e-19 | 79.7 |
| MS.gene74354.t1 | AT1G23130 | 29.530 | 149 | 103 | 2 | 3 | 150 | 10 | 157 | 3.04e-19 | 79.7 |
| MS.gene74354.t1 | AT1G23120 | 29.167 | 144 | 97 | 3 | 7 | 150 | 57 | 195 | 4.01e-19 | 80.1 |
| MS.gene74354.t1 | AT1G70880 | 30.667 | 150 | 101 | 3 | 3 | 150 | 8 | 156 | 1.17e-18 | 78.2 |
| MS.gene74354.t1 | AT4G23670 | 32.680 | 153 | 100 | 3 | 1 | 152 | 1 | 151 | 2.23e-18 | 77.0 |
| MS.gene74354.t1 | AT1G14930 | 31.210 | 157 | 105 | 3 | 1 | 156 | 1 | 155 | 2.37e-18 | 77.0 |
| MS.gene74354.t1 | AT2G01520 | 30.065 | 153 | 104 | 3 | 1 | 152 | 1 | 151 | 1.14e-16 | 72.8 |
| MS.gene74354.t1 | AT4G23680 | 30.921 | 152 | 102 | 3 | 1 | 151 | 1 | 150 | 1.00e-15 | 70.1 |
| MS.gene74354.t1 | AT4G14060 | 30.065 | 153 | 104 | 3 | 1 | 152 | 1 | 151 | 3.51e-15 | 68.9 |
| MS.gene74354.t1 | AT1G14940 | 29.299 | 157 | 108 | 3 | 1 | 156 | 1 | 155 | 6.08e-15 | 68.2 |
| MS.gene74354.t1 | AT1G35260 | 25.166 | 151 | 109 | 3 | 2 | 150 | 1 | 149 | 6.48e-15 | 68.2 |
| MS.gene74354.t1 | AT2G01530 | 29.412 | 153 | 105 | 3 | 1 | 152 | 1 | 151 | 1.42e-14 | 67.4 |
| MS.gene74354.t1 | AT1G24020 | 30.263 | 152 | 104 | 2 | 1 | 151 | 1 | 151 | 5.84e-14 | 65.9 |
| MS.gene74354.t1 | AT1G24020 | 30.263 | 152 | 104 | 2 | 1 | 151 | 1 | 151 | 5.84e-14 | 65.9 |
| MS.gene74354.t1 | AT1G14950 | 28.025 | 157 | 110 | 3 | 1 | 156 | 1 | 155 | 3.98e-13 | 63.5 |
| MS.gene74354.t1 | AT1G30990 | 29.139 | 151 | 103 | 4 | 1 | 150 | 1 | 148 | 4.49e-13 | 63.2 |
| MS.gene74354.t1 | AT3G26460 | 28.205 | 156 | 104 | 5 | 1 | 152 | 1 | 152 | 1.56e-11 | 59.3 |
Find 29 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCATTATAGGGTCTTTA+AGG | 0.251134 | 8.4:+55708388 | MS.gene74354:CDS |
| GAGATATTGATGAGCATTAT+AGG | 0.261538 | 8.4:+55708378 | MS.gene74354:CDS |
| AATGGCTACATGGAACATTT+TGG | 0.264766 | 8.4:+55708503 | MS.gene74354:CDS |
| GGTAAGCTCAGTACTGAAAT+TGG | 0.267652 | 8.4:+55705984 | MS.gene74354:CDS |
| ATCTTCACCTTCATGAAGTT+TGG | 0.293563 | 8.4:-55706093 | None:intergenic |
| ATGGCACTGCTGCTGCTAAA+TGG | 0.310932 | 8.4:+55708438 | MS.gene74354:CDS |
| CACCCTTATCAATTACTTCA+AGG | 0.382574 | 8.4:-55708415 | None:intergenic |
| AAATGTTCCATGTAGCCATT+TGG | 0.413070 | 8.4:-55708500 | None:intergenic |
| CATCCTTGAAGTAATTGATA+AGG | 0.441221 | 8.4:+55708412 | MS.gene74354:CDS |
| CACCTTCATGAAGTTTGGTA+TGG | 0.456107 | 8.4:-55706088 | None:intergenic |
| AACACTTATAAGCTCTTTGG+TGG | 0.457999 | 8.4:+55708356 | MS.gene74354:CDS |
| TTCTAAGAAATGGTGCTCTC+TGG | 0.461766 | 8.4:+55705963 | None:intergenic |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8.4:+55706137 | MS.gene74354:CDS |
| AACTTCATGAAGGTGAAGAT+TGG | 0.483425 | 8.4:+55706096 | MS.gene74354:CDS |
| ATCCTTGAAGTAATTGATAA+GGG | 0.489024 | 8.4:+55708413 | MS.gene74354:CDS |
| AGATTGGCATCACTCTGATT+CGG | 0.512517 | 8.4:+55706112 | MS.gene74354:CDS |
| TGACCCTCCAAATGGCTACA+TGG | 0.521176 | 8.4:+55708493 | MS.gene74354:CDS |
| GAGGATATTGACCCTCCAAA+TGG | 0.540200 | 8.4:+55708485 | MS.gene74354:CDS |
| TGTTCCATGTAGCCATTTGG+AGG | 0.542543 | 8.4:-55708497 | None:intergenic |
| GAAGTAATTGATAAGGGTGA+TGG | 0.549119 | 8.4:+55708419 | MS.gene74354:CDS |
| AGATATTGATGAGCATTATA+GGG | 0.551405 | 8.4:+55708379 | MS.gene74354:CDS |
| GTTGATGCTCATCTTGTCAA+AGG | 0.600604 | 8.4:+55708542 | MS.gene74354:CDS |
| CACCATACCAAACTTCATGA+AGG | 0.601337 | 8.4:+55706086 | MS.gene74354:CDS |
| ATAATTCACACCAGATGGCA+AGG | 0.615701 | 8.4:+55708283 | MS.gene74354:intron |
| ACTCTGATTCGGTTAAACAC+TGG | 0.619526 | 8.4:+55706123 | MS.gene74354:CDS |
| GTTCCATGTAGCCATTTGGA+GGG | 0.622662 | 8.4:-55708496 | None:intergenic |
| TAGATTGTAGAACTTATCAG+AGG | 0.623153 | 8.4:-55706018 | None:intergenic |
| AGATTGTAGAACTTATCAGA+GGG | 0.653447 | 8.4:-55706017 | None:intergenic |
| TGAATATGAAAAGATCAATG+AGG | 0.667026 | 8.4:+55708466 | MS.gene74354:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTATATGTTAAAAAAAT+AGG | + | chr8.4:55708190-55708209 | MS.gene74354:intron | 10.0% |
| !! | GTAAAAATTATGAATTATTT+GGG | + | chr8.4:55708031-55708050 | MS.gene74354:intron | 10.0% |
| !! | TATGAACAATAAATATTTAT+AGG | - | chr8.4:55708095-55708114 | None:intergenic | 10.0% |
| !! | TGTAAAAATTATGAATTATT+TGG | + | chr8.4:55708030-55708049 | MS.gene74354:intron | 10.0% |
| !!! | AATATAATAGTTTTCTTTTT+AGG | + | chr8.4:55708154-55708173 | MS.gene74354:intron | 10.0% |
| !!! | GCTTTTAATATTTTTTTTTA+TGG | - | chr8.4:55707862-55707881 | None:intergenic | 10.0% |
| !!! | GTTTTTTTTTTTTTTTTTTG+TGG | - | chr8.4:55707789-55707808 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAACTACACAA+CGG | + | chr8.4:55707796-55707815 | MS.gene74354:intron | 15.0% |
| !! | AATCATATAAAGAATATATG+TGG | + | chr8.4:55708065-55708084 | MS.gene74354:intron | 15.0% |
| !! | ATGATTACAAACTATTAAAA+TGG | - | chr8.4:55706811-55706830 | None:intergenic | 15.0% |
| !! | GTACAACATAAATAAAATTA+AGG | + | chr8.4:55707224-55707243 | MS.gene74354:intron | 15.0% |
| !! | TCATAAAATATGTCAATAAT+TGG | + | chr8.4:55707194-55707213 | MS.gene74354:intron | 15.0% |
| !!! | AATTTTATTTATGTTGTACT+GGG | - | chr8.4:55707223-55707242 | None:intergenic | 15.0% |
| !!! | TAATTTTATTTATGTTGTAC+TGG | - | chr8.4:55707224-55707243 | None:intergenic | 15.0% |
| !!! | TCTTTAGAAAAAATATTCAT+TGG | + | chr8.4:55708119-55708138 | MS.gene74354:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGTGG+TGG | - | chr8.4:55707786-55707805 | None:intergenic | 15.0% |
| !! | AATAATCCTCTATAGATATA+AGG | + | chr8.4:55707058-55707077 | MS.gene74354:intron | 20.0% |
| !! | AATCATATAAGATGATGATT+TGG | - | chr8.4:55706199-55706218 | None:intergenic | 20.0% |
| !! | CAAATGAATTCTATAAAGAT+TGG | + | chr8.4:55706306-55706325 | MS.gene74354:intron | 20.0% |
| !! | CAATCTTTATAGAATTCATT+TGG | - | chr8.4:55706308-55706327 | None:intergenic | 20.0% |
| !! | GAAATAAACTCAAAACTTAA+AGG | - | chr8.4:55707397-55707416 | None:intergenic | 20.0% |
| !! | TAGGTCTTCTATAAAATTAT+GGG | - | chr8.4:55706516-55706535 | None:intergenic | 20.0% |
| !! | TGTACACATCAATAAAAAAT+AGG | + | chr8.4:55706855-55706874 | MS.gene74354:intron | 20.0% |
| !! | TTAGGTCTTCTATAAAATTA+TGG | - | chr8.4:55706517-55706536 | None:intergenic | 20.0% |
| !!! | TTAAAGAGATTTGATTTTGT+AGG | + | chr8.4:55706750-55706769 | MS.gene74354:intron | 20.0% |
| !!! | TTTAAGTTTGAAGTTTGTTT+CGG | + | chr8.4:55707267-55707286 | MS.gene74354:intron | 20.0% |
| ! | AAAAACACTTATAAGCTCTT+TGG | + | chr8.4:55708353-55708372 | MS.gene74354:CDS | 25.0% |
| ! | AAAATAGGAAAATACTTGTG+TGG | + | chr8.4:55706870-55706889 | MS.gene74354:intron | 25.0% |
| ! | AAAATGTCGAAAATAATCCT+AGG | + | chr8.4:55707125-55707144 | MS.gene74354:intron | 25.0% |
| ! | AGATATTGATGAGCATTATA+GGG | + | chr8.4:55708379-55708398 | MS.gene74354:CDS | 25.0% |
| ! | ATCCTTGAAGTAATTGATAA+GGG | + | chr8.4:55708413-55708432 | MS.gene74354:CDS | 25.0% |
| ! | CAAACAAACTTCAAACTTAA+AGG | - | chr8.4:55707328-55707347 | None:intergenic | 25.0% |
| ! | CTATACTTCTAACAGAAAAA+AGG | + | chr8.4:55706262-55706281 | MS.gene74354:intron | 25.0% |
| ! | GAAACAAACTTCAAACTTAA+AGG | - | chr8.4:55707268-55707287 | None:intergenic | 25.0% |
| ! | TGAATATGAAAAGATCAATG+AGG | + | chr8.4:55708466-55708485 | MS.gene74354:CDS | 25.0% |
| ! | TTAATGTTACTGTAGTTGTT+AGG | - | chr8.4:55706535-55706554 | None:intergenic | 25.0% |
| !! | AGTTTGTTTGAAGTTTGTTT+CGG | + | chr8.4:55707338-55707357 | MS.gene74354:intron | 25.0% |
| !! | CTTTTGATCTAAAAGATACA+AGG | + | chr8.4:55706583-55706602 | MS.gene74354:intron | 25.0% |
| !!! | GTTTTGAGTTTATTTCAGAT+AGG | + | chr8.4:55707401-55707420 | MS.gene74354:intron | 25.0% |
| !!! | TTTAAGTTTCGAGTTTGTTT+CGG | - | chr8.4:55707480-55707499 | None:intergenic | 25.0% |
| AGATTGTAGAACTTATCAGA+GGG | - | chr8.4:55706020-55706039 | None:intergenic | 30.0% | |
| AGTCAACCTTATATCTATAG+AGG | - | chr8.4:55707067-55707086 | None:intergenic | 30.0% | |
| ATAGGTCCATTAAGTTTCTA+AGG | + | chr8.4:55707361-55707380 | MS.gene74354:intron | 30.0% | |
| ATCTGACCTTAGAAACTTAA+TGG | - | chr8.4:55707370-55707389 | None:intergenic | 30.0% | |
| CATCCTTGAAGTAATTGATA+AGG | + | chr8.4:55708412-55708431 | MS.gene74354:CDS | 30.0% | |
| CCTTTCTATCAAATCAACTT+TGG | - | chr8.4:55707451-55707470 | None:intergenic | 30.0% | |
| CGAAAATAATCCTAGGTATA+AGG | + | chr8.4:55707132-55707151 | MS.gene74354:intron | 30.0% | |
| CGACATAATAACATTTGCAA+AGG | + | chr8.4:55706777-55706796 | MS.gene74354:intron | 30.0% | |
| CTGAAACCTTAGAAACTTAA+AGG | + | chr8.4:55707539-55707558 | MS.gene74354:intron | 30.0% | |
| CTGAAACCTTAGAAACTTAA+AGG | - | chr8.4:55707558-55707539 | None:intergenic | 30.0% | |
| GAAACAAACTCGAAACTTAA+AGG | + | chr8.4:55707479-55707498 | MS.gene74354:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr8.4:55707742-55707761 | MS.gene74354:intron | 30.0% | |
| GAGATATTGATGAGCATTAT+AGG | + | chr8.4:55708378-55708397 | MS.gene74354:CDS | 30.0% | |
| GATACAAACGTGAAACTTAA+AGG | + | chr8.4:55707570-55707589 | MS.gene74354:intron | 30.0% | |
| TAGATTGTAGAACTTATCAG+AGG | - | chr8.4:55706021-55706040 | None:intergenic | 30.0% | |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | + | chr8.4:55707290-55707309 | MS.gene74354:intron | 30.0% |
| ! | ATAGGTCCTTTAAGTTTCTA+AGG | - | chr8.4:55707309-55707290 | None:intergenic | 30.0% |
| ! | GTTTGTTGAATGTTAGTTTG+CGG | - | chr8.4:55706719-55706738 | None:intergenic | 30.0% |
| !! | AAGCCAGTGTTGTTAATTTT+AGG | - | chr8.4:55707614-55707633 | None:intergenic | 30.0% |
| !! | AAGTTTCTAAGGTTTCAGAT+AGG | + | chr8.4:55707301-55707320 | MS.gene74354:intron | 30.0% |
| !! | AAGTTTCTAAGGTTTCAGAT+TGG | - | chr8.4:55707320-55707301 | None:intergenic | 30.0% |
| !! | AGAGATTTGATTTTGTAGGA+AGG | + | chr8.4:55706754-55706773 | MS.gene74354:intron | 30.0% |
| !! | ATAGATATAAGGTTGACTTG+TGG | + | chr8.4:55707069-55707088 | MS.gene74354:intron | 30.0% |
| !! | CCAAAGTTGATTTGATAGAA+AGG | + | chr8.4:55707448-55707467 | MS.gene74354:intron | 30.0% |
| !! | TTAAGTTTCTAAGGTCAGAT+AGG | + | chr8.4:55707370-55707389 | MS.gene74354:intron | 30.0% |
| !! | TTTGTTGAATGTTAGTTTGC+GGG | - | chr8.4:55706718-55706737 | None:intergenic | 30.0% |
| !! | TTTTTAGAGAAAGACTTGTG+TGG | - | chr8.4:55707039-55707058 | None:intergenic | 30.0% |
| AAAAACTACACAACGGACAA+TGG | + | chr8.4:55707803-55707822 | MS.gene74354:intron | 35.0% | |
| AAAAGAGTCGAAAGAGAAAG+AGG | - | chr8.4:55706639-55706658 | None:intergenic | 35.0% | |
| AAACACTGGACTTATGTCAT+AGG | + | chr8.4:55706137-55706156 | MS.gene74354:CDS | 35.0% | |
| AAAGAGAAAGAGGTGATTGA+AGG | - | chr8.4:55706629-55706648 | None:intergenic | 35.0% | |
| AAATGTTCCATGTAGCCATT+TGG | - | chr8.4:55708503-55708522 | None:intergenic | 35.0% | |
| AACACTTATAAGCTCTTTGG+TGG | + | chr8.4:55708356-55708375 | MS.gene74354:CDS | 35.0% | |
| AACTTCAAACTTAAAGGACC+CGG | - | chr8.4:55707262-55707281 | None:intergenic | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | + | chr8.4:55706096-55706115 | MS.gene74354:CDS | 35.0% | |
| AAGAGAGAAGAGAGAGAAAA+TGG | + | chr8.4:55706951-55706970 | MS.gene74354:intron | 35.0% | |
| ACATCATAATTCACACCAGA+TGG | + | chr8.4:55708278-55708297 | MS.gene74354:intron | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | - | chr8.4:55706096-55706115 | None:intergenic | 35.0% | |
| CACCCTTATCAATTACTTCA+AGG | - | chr8.4:55708418-55708437 | None:intergenic | 35.0% | |
| CTTGAAAATCTCATGCCAAA+TGG | + | chr8.4:55706691-55706710 | MS.gene74354:intron | 35.0% | |
| GAAGTAATTGATAAGGGTGA+TGG | + | chr8.4:55708419-55708438 | MS.gene74354:CDS | 35.0% | |
| GATACATTGAGACTAACCTA+AGG | + | chr8.4:55706328-55706347 | MS.gene74354:intron | 35.0% | |
| GTTTCACGTTTGTATCAGAT+AGG | - | chr8.4:55707566-55707585 | None:intergenic | 35.0% | |
| TGAGCATTATAGGGTCTTTA+AGG | + | chr8.4:55708388-55708407 | MS.gene74354:CDS | 35.0% | |
| TGCATAATATATGCAAGGTC+TGG | + | chr8.4:55707747-55707766 | MS.gene74354:intron | 35.0% | |
| TGGCCTAAAATTAACAACAC+TGG | + | chr8.4:55707608-55707627 | MS.gene74354:intron | 35.0% | |
| TGGTGTGAATTATGATGTCA+CGG | - | chr8.4:55708276-55708295 | None:intergenic | 35.0% | |
| ! | AATCAACTTTGGCTTAACAG+AGG | - | chr8.4:55707440-55707459 | None:intergenic | 35.0% |
| ! | AATGGCTACATGGAACATTT+TGG | + | chr8.4:55708503-55708522 | MS.gene74354:CDS | 35.0% |
| ! | GTTTGAAGTTTGTTTCGGAT+AGG | + | chr8.4:55707272-55707291 | MS.gene74354:intron | 35.0% |
| ! | TAAGCTTAACTCAGTTGGTA+TGG | + | chr8.4:55707720-55707739 | MS.gene74354:intron | 35.0% |
| ! | TCTCTTTCGACTCTTTTGAA+CGG | + | chr8.4:55706642-55706661 | MS.gene74354:intron | 35.0% |
| !! | CTTAACAGAGGTTGATAGAA+AGG | - | chr8.4:55707428-55707447 | None:intergenic | 35.0% |
| !! | GTTTCGAGTTTGTTTCAGAT+TGG | - | chr8.4:55707475-55707494 | None:intergenic | 35.0% |
| !! | TGATGATTTGGTTATCGATC+AGG | - | chr8.4:55706187-55706206 | None:intergenic | 35.0% |
| !! | TTTGGCATGAGATTTTCAAG+TGG | - | chr8.4:55706691-55706710 | None:intergenic | 35.0% |
| ACTCGTAAGCTTAACTCAGT+TGG | + | chr8.4:55707715-55707734 | MS.gene74354:intron | 40.0% | |
| ACTTCAAACTTAAAGGACCC+GGG | - | chr8.4:55707261-55707280 | None:intergenic | 40.0% | |
| AGAAAGAGGTGATTGAAGGA+GGG | - | chr8.4:55706625-55706644 | None:intergenic | 40.0% | |
| AGATTGGCATCACTCTGATT+CGG | + | chr8.4:55706112-55706131 | MS.gene74354:CDS | 40.0% | |
| ATAATTCACACCAGATGGCA+AGG | + | chr8.4:55708283-55708302 | MS.gene74354:intron | 40.0% | |
| ATACTTCAGTGCCATAGCAA+TGG | - | chr8.4:55706490-55706509 | None:intergenic | 40.0% | |
| ATTAAGGTCAAATACCTCCC+CGG | + | chr8.4:55707240-55707259 | MS.gene74354:intron | 40.0% | |
| CACCATACCAAACTTCATGA+AGG | + | chr8.4:55706086-55706105 | MS.gene74354:CDS | 40.0% | |
| CACCTTCATGAAGTTTGGTA+TGG | - | chr8.4:55706091-55706110 | None:intergenic | 40.0% | |
| GAAAATACTTGTGTGGACCA+AGG | + | chr8.4:55706877-55706896 | MS.gene74354:intron | 40.0% | |
| GAAACTTAAAGGACTCACGA+AGG | + | chr8.4:55707581-55707600 | MS.gene74354:intron | 40.0% | |
| GGTGTGAATTATGATGTCAC+GGG | - | chr8.4:55708275-55708294 | None:intergenic | 40.0% | |
| GTTGATGCTCATCTTGTCAA+AGG | + | chr8.4:55708542-55708561 | MS.gene74354:CDS | 40.0% | |
| TCTCTTCTCTCCCATTTCTT+TGG | - | chr8.4:55706928-55706947 | None:intergenic | 40.0% | |
| TGTGACCAAACTCAATTGTG+TGG | + | chr8.4:55707006-55707025 | MS.gene74354:intron | 40.0% | |
| ! | ACAAGTCAAGCCTTATACCT+AGG | - | chr8.4:55707145-55707164 | None:intergenic | 40.0% |
| ! | GGTAAGCTCAGTACTGAAAT+TGG | + | chr8.4:55705984-55706003 | MS.gene74354:CDS | 40.0% |
| ! | TAGGTATAAGGCTTGACTTG+TGG | + | chr8.4:55707144-55707163 | MS.gene74354:intron | 40.0% |
| !! | AAAGGACTCACGAAGGTATT+TGG | + | chr8.4:55707588-55707607 | MS.gene74354:intron | 40.0% |
| !! | ACTCTGATTCGGTTAAACAC+TGG | + | chr8.4:55706123-55706142 | MS.gene74354:CDS | 40.0% |
| !! | GTTTCGAGTTTGTTTCGGAT+AGG | - | chr8.4:55707506-55707525 | None:intergenic | 40.0% |
| !! | TATAAGGCTTGACTTGTGGT+TGG | + | chr8.4:55707148-55707167 | MS.gene74354:intron | 40.0% |
| !!! | AGATTTTCAAGTGGAAGGCT+GGG | - | chr8.4:55706682-55706701 | None:intergenic | 40.0% |
| !!! | GCATGAGATTTTCAAGTGGA+AGG | - | chr8.4:55706687-55706706 | None:intergenic | 40.0% |
| CACACATCCACACACATCAA+CGG | + | chr8.4:55706435-55706454 | MS.gene74354:intron | 45.0% | |
| CAGGACCACACAATTGAGTT+TGG | - | chr8.4:55707014-55707033 | None:intergenic | 45.0% | |
| CTAACCTAAGGACTCCACTT+TGG | + | chr8.4:55706340-55706359 | MS.gene74354:intron | 45.0% | |
| CTTCAAACTTAAAGGACCCG+GGG | - | chr8.4:55707260-55707279 | None:intergenic | 45.0% | |
| GAGAAAGACTTGTGTGGATC+AGG | - | chr8.4:55707033-55707052 | None:intergenic | 45.0% | |
| GAGAAAGAGGTGATTGAAGG+AGG | - | chr8.4:55706626-55706645 | None:intergenic | 45.0% | |
| GAGGATATTGACCCTCCAAA+TGG | + | chr8.4:55708485-55708504 | MS.gene74354:CDS | 45.0% | |
| GTGGTCGCAACCAAAGAAAT+GGG | + | chr8.4:55706915-55706934 | MS.gene74354:intron | 45.0% | |
| GTTCCATGTAGCCATTTGGA+GGG | - | chr8.4:55708499-55708518 | None:intergenic | 45.0% | |
| TGATGTGTGTGGATGTGTGT+GGG | - | chr8.4:55706434-55706453 | None:intergenic | 45.0% | |
| TGCCATTAATGGCACCAAAG+TGG | - | chr8.4:55706357-55706376 | None:intergenic | 45.0% | |
| TGTGGTCGCAACCAAAGAAA+TGG | + | chr8.4:55706914-55706933 | MS.gene74354:intron | 45.0% | |
| TGTTCCATGTAGCCATTTGG+AGG | - | chr8.4:55708500-55708519 | None:intergenic | 45.0% | |
| TTAAGGTCAAATACCTCCCC+GGG | + | chr8.4:55707241-55707260 | MS.gene74354:intron | 45.0% | |
| TTGATGTGTGTGGATGTGTG+TGG | - | chr8.4:55706435-55706454 | None:intergenic | 45.0% | |
| TTTGGTTGCGACCACACAAT+GGG | - | chr8.4:55706910-55706929 | None:intergenic | 45.0% | |
| !! | ATGCAATGGTATGGTGCCAT+TGG | - | chr8.4:55706380-55706399 | None:intergenic | 45.0% |
| !! | CTCCACTTTGGTGCCATTAA+TGG | + | chr8.4:55706352-55706371 | MS.gene74354:intron | 45.0% |
| !! | GATTGGTTCTATGGCACCAA+TGG | + | chr8.4:55706462-55706481 | MS.gene74354:intron | 45.0% |
| !! | TGTTAGTTTGCGGGACCATT+TGG | - | chr8.4:55706709-55706728 | None:intergenic | 45.0% |
| !!! | GAGATTTTCAAGTGGAAGGC+TGG | - | chr8.4:55706683-55706702 | None:intergenic | 45.0% |
| AAGGACCAAACCCCATTGTG+TGG | + | chr8.4:55706896-55706915 | MS.gene74354:intron | 50.0% | |
| ATGGCACTGCTGCTGCTAAA+TGG | + | chr8.4:55708438-55708457 | MS.gene74354:CDS | 50.0% | |
| CACCAATGGCACCATTGCTA+TGG | + | chr8.4:55706476-55706495 | MS.gene74354:intron | 50.0% | |
| CATGTGTGTACCTTGCCATC+TGG | - | chr8.4:55708296-55708315 | None:intergenic | 50.0% | |
| CTTTGGTTGCGACCACACAA+TGG | - | chr8.4:55706911-55706930 | None:intergenic | 50.0% | |
| GATGTGTGTGGATGTGTGTG+GGG | - | chr8.4:55706433-55706452 | None:intergenic | 50.0% | |
| GTGTGTGTGATGTGTGTGTG+TGG | - | chr8.4:55706408-55706427 | None:intergenic | 50.0% | |
| TGACCCTCCAAATGGCTACA+TGG | + | chr8.4:55708493-55708512 | MS.gene74354:CDS | 50.0% | |
| TGTGTGATGTGTGTGTGTGG+TGG | - | chr8.4:55706405-55706424 | None:intergenic | 50.0% | |
| TTGGTTGCGACCACACAATG+GGG | - | chr8.4:55706909-55706928 | None:intergenic | 50.0% | |
| ! | ACACAATGGGGTTTGGTCCT+TGG | - | chr8.4:55706897-55706916 | None:intergenic | 50.0% |
| ! | GTGGTGGAGATGCAATGGTA+TGG | - | chr8.4:55706389-55706408 | None:intergenic | 50.0% |
| ! | TGTGTGTGGTGGAGATGCAA+TGG | - | chr8.4:55706394-55706413 | None:intergenic | 50.0% |
| !! | AACGGCCAGGATTGGTTCTA+TGG | + | chr8.4:55706453-55706472 | MS.gene74354:intron | 50.0% |
| !! | GGTGCCATTAATGGCACCAA+TGG | + | chr8.4:55706361-55706380 | MS.gene74354:intron | 50.0% |
| !! | GGTGCCATTGGTGCCATTAA+TGG | - | chr8.4:55706368-55706387 | None:intergenic | 50.0% |
| !! | TGCCATAGCAATGGTGCCAT+TGG | - | chr8.4:55706481-55706500 | None:intergenic | 50.0% |
| !! | TGGTGCCATAGAACCAATCC+TGG | - | chr8.4:55706461-55706480 | None:intergenic | 50.0% |
| ATCCACACACATCAACGGCC+AGG | + | chr8.4:55706440-55706459 | MS.gene74354:intron | 55.0% | |
| ATCCTGGCCGTTGATGTGTG+TGG | - | chr8.4:55706445-55706464 | None:intergenic | 55.0% | |
| CAAACTTAAAGGACCCGGGG+AGG | - | chr8.4:55707257-55707276 | None:intergenic | 55.0% | |
| CACACATCAACGGCCAGGAT+TGG | + | chr8.4:55706445-55706464 | MS.gene74354:intron | 55.0% | |
| GGCACCAAAGTGGAGTCCTT+AGG | - | chr8.4:55706347-55706366 | None:intergenic | 55.0% | |
| TGCGACCACACAATGGGGTT+TGG | - | chr8.4:55706904-55706923 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 55705972 | 55708583 | 55705972 | ID=MS.gene74354 |
| chr8.4 | mRNA | 55705972 | 55708583 | 55705972 | ID=MS.gene74354.t1;Parent=MS.gene74354 |
| chr8.4 | exon | 55705972 | 55706158 | 55705972 | ID=MS.gene74354.t1.exon1;Parent=MS.gene74354.t1 |
| chr8.4 | CDS | 55705972 | 55706158 | 55705972 | ID=cds.MS.gene74354.t1;Parent=MS.gene74354.t1 |
| chr8.4 | exon | 55708297 | 55708583 | 55708297 | ID=MS.gene74354.t1.exon2;Parent=MS.gene74354.t1 |
| chr8.4 | CDS | 55708297 | 55708583 | 55708297 | ID=cds.MS.gene74354.t1;Parent=MS.gene74354.t1 |
| Gene Sequence |
| Protein sequence |
