Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026605.t1 | RHN77962.1 | 92.8 | 153 | 11 | 0 | 1 | 153 | 5 | 157 | 7.40E-76 | 293.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026605.t1 | Q9SSK5 | 38.3 | 154 | 91 | 3 | 2 | 153 | 6 | 157 | 1.6e-26 | 120.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026605.t1 | I3T9Y8 | 92.8 | 153 | 11 | 0 | 1 | 153 | 1 | 153 | 5.3e-76 | 293.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026605.t1 | MTR_1g030820 | 92.810 | 153 | 11 | 0 | 1 | 153 | 1 | 153 | 1.02e-101 | 288 |
MS.gene026605.t1 | MTR_1g030810 | 86.275 | 153 | 21 | 0 | 1 | 153 | 1 | 153 | 2.68e-96 | 275 |
MS.gene026605.t1 | MTR_1g030840 | 58.065 | 155 | 60 | 2 | 1 | 150 | 1 | 155 | 6.89e-61 | 185 |
MS.gene026605.t1 | MTR_8g045490 | 41.176 | 153 | 87 | 2 | 1 | 152 | 1 | 151 | 1.71e-38 | 128 |
MS.gene026605.t1 | MTR_8g045570 | 40.523 | 153 | 88 | 2 | 1 | 152 | 1 | 151 | 2.56e-38 | 127 |
MS.gene026605.t1 | MTR_8g045400 | 39.869 | 153 | 88 | 3 | 1 | 152 | 1 | 150 | 6.20e-37 | 124 |
MS.gene026605.t1 | MTR_8g045695 | 38.562 | 153 | 90 | 3 | 1 | 152 | 1 | 150 | 2.03e-36 | 123 |
MS.gene026605.t1 | MTR_8g045735 | 38.562 | 153 | 90 | 3 | 1 | 152 | 1 | 150 | 3.41e-36 | 122 |
MS.gene026605.t1 | MTR_8g045560 | 38.562 | 153 | 90 | 3 | 1 | 152 | 1 | 150 | 3.69e-36 | 122 |
MS.gene026605.t1 | MTR_8g045555 | 37.255 | 153 | 93 | 2 | 1 | 152 | 1 | 151 | 4.81e-36 | 122 |
MS.gene026605.t1 | MTR_8g045520 | 38.312 | 154 | 92 | 2 | 1 | 153 | 1 | 152 | 1.82e-35 | 120 |
MS.gene026605.t1 | MTR_8g045300 | 39.610 | 154 | 90 | 2 | 1 | 153 | 1 | 152 | 1.78e-34 | 118 |
MS.gene026605.t1 | MTR_8g045640 | 37.255 | 153 | 92 | 3 | 1 | 152 | 1 | 150 | 2.80e-34 | 117 |
MS.gene026605.t1 | MTR_8g045665 | 36.601 | 153 | 93 | 3 | 1 | 152 | 1 | 150 | 4.05e-34 | 117 |
MS.gene026605.t1 | MTR_8g012550 | 36.538 | 156 | 93 | 4 | 1 | 153 | 1 | 153 | 2.10e-28 | 102 |
MS.gene026605.t1 | MTR_1g031640 | 37.662 | 154 | 86 | 5 | 1 | 152 | 1 | 146 | 2.16e-27 | 100 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026605.t1 | AT1G70890 | 38.312 | 154 | 91 | 3 | 2 | 153 | 6 | 157 | 1.90e-32 | 113 |
MS.gene026605.t1 | AT5G28010 | 38.961 | 154 | 90 | 3 | 2 | 153 | 14 | 165 | 1.78e-31 | 110 |
MS.gene026605.t1 | AT5G28010 | 38.961 | 154 | 90 | 3 | 2 | 153 | 14 | 165 | 1.78e-31 | 110 |
MS.gene026605.t1 | AT1G70840 | 35.065 | 154 | 96 | 3 | 2 | 153 | 19 | 170 | 5.96e-31 | 109 |
MS.gene026605.t1 | AT1G70830 | 37.013 | 154 | 93 | 3 | 2 | 153 | 21 | 172 | 2.11e-30 | 108 |
MS.gene026605.t1 | AT1G70830 | 37.013 | 154 | 93 | 3 | 2 | 153 | 21 | 172 | 4.18e-30 | 108 |
MS.gene026605.t1 | AT1G70830 | 37.013 | 154 | 93 | 3 | 2 | 153 | 21 | 172 | 2.02e-29 | 108 |
MS.gene026605.t1 | AT1G70830 | 37.013 | 154 | 93 | 3 | 2 | 153 | 21 | 172 | 7.79e-29 | 108 |
MS.gene026605.t1 | AT1G70830 | 36.364 | 154 | 94 | 3 | 2 | 153 | 183 | 334 | 1.74e-27 | 104 |
MS.gene026605.t1 | AT1G70830 | 36.364 | 154 | 94 | 3 | 2 | 153 | 136 | 287 | 5.08e-28 | 105 |
MS.gene026605.t1 | AT1G70830 | 36.458 | 96 | 58 | 2 | 59 | 153 | 32 | 125 | 4.92e-14 | 67.8 |
MS.gene026605.t1 | AT1G70850 | 34.211 | 152 | 96 | 3 | 2 | 151 | 8 | 157 | 6.43e-27 | 101 |
MS.gene026605.t1 | AT5G28000 | 34.416 | 154 | 97 | 3 | 2 | 153 | 12 | 163 | 2.07e-26 | 98.2 |
MS.gene026605.t1 | AT1G70850 | 34.211 | 152 | 96 | 3 | 2 | 151 | 8 | 157 | 3.06e-26 | 101 |
MS.gene026605.t1 | AT1G70850 | 35.664 | 143 | 88 | 3 | 13 | 153 | 175 | 315 | 2.55e-25 | 98.6 |
MS.gene026605.t1 | AT1G70850 | 34.211 | 152 | 96 | 3 | 2 | 151 | 8 | 157 | 3.06e-26 | 101 |
MS.gene026605.t1 | AT1G70850 | 35.664 | 143 | 88 | 3 | 13 | 153 | 175 | 315 | 2.55e-25 | 98.6 |
MS.gene026605.t1 | AT1G70880 | 32.468 | 154 | 100 | 3 | 2 | 153 | 7 | 158 | 2.15e-25 | 95.1 |
MS.gene026605.t1 | AT1G23130 | 27.451 | 153 | 108 | 2 | 2 | 153 | 9 | 159 | 8.15e-25 | 94.0 |
MS.gene026605.t1 | AT1G35260 | 31.293 | 147 | 96 | 3 | 7 | 151 | 6 | 149 | 1.76e-23 | 90.1 |
MS.gene026605.t1 | AT1G14930 | 35.948 | 153 | 94 | 3 | 1 | 152 | 1 | 150 | 3.22e-23 | 89.7 |
MS.gene026605.t1 | AT1G70870 | 36.842 | 152 | 82 | 5 | 1 | 152 | 1 | 138 | 8.51e-23 | 88.2 |
MS.gene026605.t1 | AT1G23120 | 32.026 | 153 | 98 | 3 | 1 | 153 | 1 | 147 | 2.31e-21 | 84.7 |
MS.gene026605.t1 | AT1G23120 | 32.026 | 153 | 98 | 3 | 1 | 153 | 51 | 197 | 7.14e-21 | 84.7 |
MS.gene026605.t1 | AT1G14950 | 30.719 | 153 | 102 | 3 | 1 | 152 | 1 | 150 | 1.27e-18 | 77.8 |
MS.gene026605.t1 | AT4G14060 | 30.719 | 153 | 102 | 3 | 1 | 152 | 1 | 150 | 2.70e-18 | 76.6 |
MS.gene026605.t1 | AT1G35310 | 30.282 | 142 | 95 | 3 | 13 | 153 | 12 | 150 | 3.42e-18 | 76.6 |
MS.gene026605.t1 | AT1G24020 | 36.420 | 162 | 84 | 7 | 1 | 153 | 1 | 152 | 9.40e-18 | 75.5 |
MS.gene026605.t1 | AT1G24020 | 36.420 | 162 | 84 | 7 | 1 | 153 | 1 | 152 | 9.40e-18 | 75.5 |
MS.gene026605.t1 | AT2G01520 | 30.065 | 153 | 103 | 3 | 1 | 152 | 1 | 150 | 2.27e-17 | 74.3 |
MS.gene026605.t1 | AT1G14940 | 30.263 | 152 | 102 | 3 | 1 | 151 | 1 | 149 | 1.25e-16 | 72.4 |
MS.gene026605.t1 | AT1G30990 | 28.289 | 152 | 104 | 3 | 1 | 151 | 1 | 148 | 8.50e-16 | 70.5 |
MS.gene026605.t1 | AT2G01530 | 30.065 | 153 | 103 | 3 | 1 | 152 | 1 | 150 | 4.50e-15 | 68.6 |
MS.gene026605.t1 | AT1G14960 | 28.758 | 153 | 105 | 3 | 1 | 152 | 1 | 150 | 6.06e-15 | 68.2 |
MS.gene026605.t1 | AT3G26460 | 28.571 | 154 | 105 | 4 | 1 | 152 | 1 | 151 | 2.34e-13 | 63.9 |
MS.gene026605.t1 | AT3G26450 | 29.221 | 154 | 104 | 4 | 1 | 152 | 1 | 151 | 3.83e-13 | 63.5 |
MS.gene026605.t1 | AT4G23670 | 30.065 | 153 | 103 | 3 | 1 | 152 | 1 | 150 | 6.57e-13 | 62.8 |
Find 33 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGGCGGTGGGATTGTTAAA+TGG | 0.250474 | 1.1:+16396137 | MS.gene026605:CDS |
TGTACTTCTGTGGTGATATT+AGG | 0.304651 | 1.1:-16394767 | None:intergenic |
TGAGAGTTACAAGAGTTTAA+AGG | 0.313337 | 1.1:+16396087 | MS.gene026605:CDS |
GAAGGTGACTGGGAAAATAT+TGG | 0.418929 | 1.1:+16394806 | MS.gene026605:CDS |
AAGCTAAAGGAGGAAATTAC+AGG | 0.424947 | 1.1:+16396175 | MS.gene026605:CDS |
ATACTTGGACCTTGCTGTAA+AGG | 0.426075 | 1.1:+16396213 | MS.gene026605:CDS |
GCAAGGTCCAAGTATGAATC+AGG | 0.441032 | 1.1:-16396205 | None:intergenic |
TGGCGGTGGGATTGTTAAAT+GGG | 0.449282 | 1.1:+16396138 | MS.gene026605:CDS |
ATCATATATAGCATTTATGA+TGG | 0.503220 | 1.1:+16396055 | MS.gene026605:CDS |
AGCATTTATGATGGAGAAGT+GGG | 0.508881 | 1.1:+16396064 | MS.gene026605:CDS |
AGAAGAGACATGGCTTTAAG+TGG | 0.509760 | 1.1:+16394665 | None:intergenic |
TGTATCTCCTGATTCATACT+TGG | 0.511390 | 1.1:+16396198 | MS.gene026605:CDS |
CATGGCTTTAAGTGGGAAAG+TGG | 0.512659 | 1.1:+16394673 | None:intergenic |
GTAGAGTGCATGAAGGTGAC+TGG | 0.523294 | 1.1:+16394795 | MS.gene026605:CDS |
ATATTGGTTCTATCAAGCAC+TGG | 0.538736 | 1.1:+16394822 | MS.gene026605:CDS |
TAGCATTTATGATGGAGAAG+TGG | 0.547050 | 1.1:+16396063 | MS.gene026605:CDS |
ATTCATAAAGAACATGGCGG+TGG | 0.553991 | 1.1:+16396124 | MS.gene026605:CDS |
AATATCACCACAGAAGTACA+TGG | 0.570466 | 1.1:+16394770 | MS.gene026605:CDS |
TTCATAAAGAACATGGCGGT+GGG | 0.580916 | 1.1:+16396125 | MS.gene026605:CDS |
GAAGAGACATGGCTTTAAGT+GGG | 0.591992 | 1.1:+16394666 | None:intergenic |
TATTGGTTCTATCAAGCACT+GGG | 0.594586 | 1.1:+16394823 | MS.gene026605:CDS |
TCTACCTCCATGTACTTCTG+TGG | 0.594643 | 1.1:-16394777 | None:intergenic |
CAAGTGATTCATAAAGAACA+TGG | 0.599510 | 1.1:+16396118 | MS.gene026605:CDS |
TAGAGTGCATGAAGGTGACT+GGG | 0.605256 | 1.1:+16394796 | MS.gene026605:CDS |
TATTGATTCTCATCTTGTCA+AGG | 0.605627 | 1.1:+16396246 | MS.gene026605:CDS |
ATACGAATATGAGAAGCTAA+AGG | 0.610623 | 1.1:+16396162 | MS.gene026605:CDS |
AAGCACTGGGAATTTACAGT+AGG | 0.622307 | 1.1:+16394836 | MS.gene026605:CDS |
CGAATATGAGAAGCTAAAGG+AGG | 0.640547 | 1.1:+16396165 | MS.gene026605:CDS |
CATGGAGGTAGAGTGCATGA+AGG | 0.659264 | 1.1:+16394788 | MS.gene026605:CDS |
GAAGTAGAGATTCAAGCACC+TGG | 0.664321 | 1.1:+16394701 | MS.gene026605:CDS |
ATATTATAGAACTTAGCACC+AGG | 0.670745 | 1.1:-16394719 | None:intergenic |
ATCACCACAGAAGTACATGG+AGG | 0.776492 | 1.1:+16394773 | MS.gene026605:CDS |
GTGATTCATAAAGAACATGG+CGG | 0.779821 | 1.1:+16396121 | MS.gene026605:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAAAATTATTTTAAAATA+GGG | - | chr1.1:16395548-16395567 | None:intergenic | 0.0% |
!!! | TAAAAAAATTATTTTAAAAT+AGG | - | chr1.1:16395549-16395568 | None:intergenic | 0.0% |
!!! | ATATGAATTTATTTTAAAAG+AGG | + | chr1.1:16395799-16395818 | MS.gene026605:intron | 10.0% |
!!! | ATGAATTTTTATATTTTCTA+CGG | - | chr1.1:16395674-16395693 | None:intergenic | 10.0% |
!!! | TATGAATTTATTTTAAAAGA+GGG | + | chr1.1:16395800-16395819 | MS.gene026605:intron | 10.0% |
!!! | TTAAATATGTTTTTCTTTTA+CGG | + | chr1.1:16395391-16395410 | MS.gene026605:intron | 10.0% |
!! | ATTTGCTTATAAAAAAAACA+AGG | + | chr1.1:16395349-16395368 | MS.gene026605:intron | 15.0% |
!!! | AAATTTTCAATCACTATTTT+TGG | + | chr1.1:16395521-16395540 | MS.gene026605:intron | 15.0% |
!!! | ATAGTGATTGAAAATTTTAT+AGG | - | chr1.1:16395518-16395537 | None:intergenic | 15.0% |
!!! | TAGTGATTGAAAATTTTATA+GGG | - | chr1.1:16395517-16395536 | None:intergenic | 15.0% |
!!! | TTCATATTTAATTCATGTTT+TGG | + | chr1.1:16395689-16395708 | MS.gene026605:intron | 15.0% |
!!! | TTGTTTTTTTTATAAGCAAA+TGG | - | chr1.1:16395350-16395369 | None:intergenic | 15.0% |
!! | AAGTGTTATAAATGACAATT+TGG | - | chr1.1:16395207-16395226 | None:intergenic | 20.0% |
!! | AGGGAAAATAAATAAATAGA+AGG | - | chr1.1:16395934-16395953 | None:intergenic | 20.0% |
!! | ATCATATATAGCATTTATGA+TGG | + | chr1.1:16396055-16396074 | MS.gene026605:CDS | 20.0% |
!! | ATGTATCTAACATATAAATG+TGG | + | chr1.1:16395013-16395032 | MS.gene026605:intron | 20.0% |
!! | GGGAAAATAAATAAATAGAA+GGG | - | chr1.1:16395933-16395952 | None:intergenic | 20.0% |
!! | TAGTAAAACTATGAAACATA+AGG | - | chr1.1:16394872-16394891 | None:intergenic | 20.0% |
!!! | AAGTTGAAGAAATTTTTTAG+AGG | + | chr1.1:16395859-16395878 | MS.gene026605:intron | 20.0% |
!!! | AGTTGAAGAAATTTTTTAGA+GGG | + | chr1.1:16395860-16395879 | MS.gene026605:intron | 20.0% |
!!! | TTATTTATTTTCCCTAATCA+TGG | + | chr1.1:16395939-16395958 | MS.gene026605:intron | 20.0% |
! | ACGAAAAGTTGACATATTAT+AGG | + | chr1.1:16395889-16395908 | MS.gene026605:intron | 25.0% |
! | CGAAAAGTTGACATATTATA+GGG | + | chr1.1:16395890-16395909 | MS.gene026605:intron | 25.0% |
! | GAATTTACAGTAGGTAATTA+AGG | + | chr1.1:16394845-16394864 | MS.gene026605:intron | 25.0% |
! | TGGTCTCTAATTTCTATTTA+GGG | + | chr1.1:16395414-16395433 | MS.gene026605:intron | 25.0% |
!! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr1.1:16395489-16395508 | None:intergenic | 25.0% |
!! | AATATGTTTTTCTTTTACGG+TGG | + | chr1.1:16395394-16395413 | MS.gene026605:intron | 25.0% |
!! | ACTATTTTATAGCTCATGAA+AGG | + | chr1.1:16394888-16394907 | MS.gene026605:intron | 25.0% |
!! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr1.1:16395488-16395507 | None:intergenic | 25.0% |
!! | TAACATCAACAAAAGAGTTT+TGG | - | chr1.1:16395121-16395140 | None:intergenic | 25.0% |
!! | TTTTTGCTTATAAATGTGAC+CGG | + | chr1.1:16395074-16395093 | MS.gene026605:intron | 25.0% |
!! | TTTTTGCTTATAAATGTGAC+CGG | - | chr1.1:16395093-16395074 | None:intergenic | 25.0% |
!!! | AAGTGAAGATGGAAATTTTT+TGG | + | chr1.1:16395828-16395847 | MS.gene026605:intron | 25.0% |
!!! | TTTGTTTTTTTCCTTCTGTA+GGG | - | chr1.1:16395991-16396010 | None:intergenic | 25.0% |
AAAATCAGAGTTCCATGATT+AGG | - | chr1.1:16395954-16395973 | None:intergenic | 30.0% | |
AAATCAGAGTTCCATGATTA+GGG | - | chr1.1:16395953-16395972 | None:intergenic | 30.0% | |
ATACGAATATGAGAAGCTAA+AGG | + | chr1.1:16396162-16396181 | MS.gene026605:CDS | 30.0% | |
ATATTATAGAACTTAGCACC+AGG | - | chr1.1:16394722-16394741 | None:intergenic | 30.0% | |
ATCTAACATATAAATGTGGC+AGG | + | chr1.1:16395017-16395036 | MS.gene026605:intron | 30.0% | |
CAAGTGATTCATAAAGAACA+TGG | + | chr1.1:16396118-16396137 | MS.gene026605:CDS | 30.0% | |
GTGGTCTCTAATTTCTATTT+AGG | + | chr1.1:16395413-16395432 | MS.gene026605:intron | 30.0% | |
TAACACTTGTTCAACAATGT+TGG | + | chr1.1:16395219-16395238 | MS.gene026605:intron | 30.0% | |
TGAGAGTTACAAGAGTTTAA+AGG | + | chr1.1:16396087-16396106 | MS.gene026605:CDS | 30.0% | |
TTATAGGGACTAAAAGTTGA+AGG | - | chr1.1:16395502-16395521 | None:intergenic | 30.0% | |
!! | ATATTAAAAAGTACTCCCTC+CGG | + | chr1.1:16394943-16394962 | MS.gene026605:intron | 30.0% |
!! | ATCAACAAAAGAGTTTTGGT+AGG | - | chr1.1:16395117-16395136 | None:intergenic | 30.0% |
!! | TATTGATTCTCATCTTGTCA+AGG | + | chr1.1:16396246-16396265 | MS.gene026605:CDS | 30.0% |
!! | TCAACAAAAGAGTTTTGGTA+GGG | - | chr1.1:16395116-16395135 | None:intergenic | 30.0% |
!!! | CTTTGTTTTTTTCCTTCTGT+AGG | - | chr1.1:16395992-16396011 | None:intergenic | 30.0% |
!!! | TGAAGATGGAAATTTTTTGG+AGG | + | chr1.1:16395831-16395850 | MS.gene026605:intron | 30.0% |
AAGCTAAAGGAGGAAATTAC+AGG | + | chr1.1:16396175-16396194 | MS.gene026605:CDS | 35.0% | |
GTGATTCATAAAGAACATGG+CGG | + | chr1.1:16396121-16396140 | MS.gene026605:CDS | 35.0% | |
TGTACTTCTGTGGTGATATT+AGG | - | chr1.1:16394770-16394789 | None:intergenic | 35.0% | |
TGTATCTCCTGATTCATACT+TGG | + | chr1.1:16396198-16396217 | MS.gene026605:CDS | 35.0% | |
! | AATATCACCACAGAAGTACA+TGG | + | chr1.1:16394770-16394789 | MS.gene026605:CDS | 35.0% |
! | AGCATTTATGATGGAGAAGT+GGG | + | chr1.1:16396064-16396083 | MS.gene026605:CDS | 35.0% |
! | TAGCATTTATGATGGAGAAG+TGG | + | chr1.1:16396063-16396082 | MS.gene026605:CDS | 35.0% |
!! | ATATTGGTTCTATCAAGCAC+TGG | + | chr1.1:16394822-16394841 | MS.gene026605:CDS | 35.0% |
!! | TATTGGTTCTATCAAGCACT+GGG | + | chr1.1:16394823-16394842 | MS.gene026605:CDS | 35.0% |
AGAGGGACTAAAAGTGAAGA+TGG | + | chr1.1:16395817-16395836 | MS.gene026605:intron | 40.0% | |
ATTCATAAAGAACATGGCGG+TGG | + | chr1.1:16396124-16396143 | MS.gene026605:CDS | 40.0% | |
CGAATATGAGAAGCTAAAGG+AGG | + | chr1.1:16396165-16396184 | MS.gene026605:CDS | 40.0% | |
GAAGGTGACTGGGAAAATAT+TGG | + | chr1.1:16394806-16394825 | MS.gene026605:CDS | 40.0% | |
TACTTGTGAAACCCTACAGA+AGG | + | chr1.1:16395977-16395996 | MS.gene026605:intron | 40.0% | |
TGCTTATAAATGTGACCGGA+GGG | + | chr1.1:16395078-16395097 | MS.gene026605:intron | 40.0% | |
TGCTTATAAATGTGACCGGA+GGG | - | chr1.1:16395097-16395078 | None:intergenic | 40.0% | |
TTCATAAAGAACATGGCGGT+GGG | + | chr1.1:16396125-16396144 | MS.gene026605:CDS | 40.0% | |
TTGCTTATAAATGTGACCGG+AGG | + | chr1.1:16395077-16395096 | MS.gene026605:intron | 40.0% | |
TTGCTTATAAATGTGACCGG+AGG | - | chr1.1:16395096-16395077 | None:intergenic | 40.0% | |
! | ATACTTGGACCTTGCTGTAA+AGG | + | chr1.1:16396213-16396232 | MS.gene026605:CDS | 40.0% |
! | CTTTTGTGACCTTTACAGCA+AGG | - | chr1.1:16396225-16396244 | None:intergenic | 40.0% |
!! | AAGCACTGGGAATTTACAGT+AGG | + | chr1.1:16394836-16394855 | MS.gene026605:CDS | 40.0% |
ATGGCGGTGGGATTGTTAAA+TGG | + | chr1.1:16396137-16396156 | MS.gene026605:CDS | 45.0% | |
GAAGTAGAGATTCAAGCACC+TGG | + | chr1.1:16394701-16394720 | MS.gene026605:CDS | 45.0% | |
GCAAGGTCCAAGTATGAATC+AGG | - | chr1.1:16396208-16396227 | None:intergenic | 45.0% | |
TAGAGTGCATGAAGGTGACT+GGG | + | chr1.1:16394796-16394815 | MS.gene026605:CDS | 45.0% | |
TCTACCTCCATGTACTTCTG+TGG | - | chr1.1:16394780-16394799 | None:intergenic | 45.0% | |
TGGCGGTGGGATTGTTAAAT+GGG | + | chr1.1:16396138-16396157 | MS.gene026605:CDS | 45.0% | |
! | ATCACCACAGAAGTACATGG+AGG | + | chr1.1:16394773-16394792 | MS.gene026605:CDS | 45.0% |
!! | GAAAAATTTATAATATTATA+AGG | - | chr1.1:16395747-16395766 | None:intergenic | 5.0% |
!!! | AAAATTCTAATTTTTTTTTT+TGG | + | chr1.1:16395715-16395734 | MS.gene026605:intron | 5.0% |
!!! | TAAAAAATTCTAATATTTTT+TGG | - | chr1.1:16395621-16395640 | None:intergenic | 5.0% |
CATGGAGGTAGAGTGCATGA+AGG | + | chr1.1:16394788-16394807 | MS.gene026605:CDS | 50.0% | |
GGGTTCATTAACACTCCCTC+CGG | - | chr1.1:16395096-16395115 | None:intergenic | 50.0% | |
GTAGAGTGCATGAAGGTGAC+TGG | + | chr1.1:16394795-16394814 | MS.gene026605:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 16394674 | 16396273 | 16394674 | ID=MS.gene026605 |
chr1.1 | mRNA | 16394674 | 16396273 | 16394674 | ID=MS.gene026605.t1;Parent=MS.gene026605 |
chr1.1 | exon | 16394674 | 16394857 | 16394674 | ID=MS.gene026605.t1.exon1;Parent=MS.gene026605.t1 |
chr1.1 | CDS | 16394674 | 16394857 | 16394674 | ID=cds.MS.gene026605.t1;Parent=MS.gene026605.t1 |
chr1.1 | exon | 16395996 | 16396273 | 16395996 | ID=MS.gene026605.t1.exon2;Parent=MS.gene026605.t1 |
chr1.1 | CDS | 16395996 | 16396273 | 16395996 | ID=cds.MS.gene026605.t1;Parent=MS.gene026605.t1 |
Gene Sequence |
Protein sequence |