Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066940.t1 | XP_013445249.1 | 96.1 | 154 | 6 | 0 | 1 | 154 | 1 | 154 | 4.90E-83 | 317 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066940.t1 | Q9SSK5 | 37.3 | 153 | 92 | 4 | 3 | 152 | 7 | 158 | 8.6e-20 | 98.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066940.t1 | I3T217 | 96.1 | 154 | 6 | 0 | 1 | 154 | 1 | 154 | 3.5e-83 | 317.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066940.t1 | MTR_8g045735 | 96.104 | 154 | 6 | 0 | 1 | 154 | 1 | 154 | 1.92e-109 | 308 |
| MS.gene066940.t1 | MTR_8g045695 | 90.385 | 156 | 15 | 0 | 1 | 156 | 1 | 156 | 1.11e-104 | 296 |
| MS.gene066940.t1 | MTR_8g045665 | 85.256 | 156 | 23 | 0 | 1 | 156 | 1 | 156 | 1.16e-97 | 278 |
| MS.gene066940.t1 | MTR_8g045640 | 83.333 | 156 | 26 | 0 | 1 | 156 | 1 | 156 | 2.70e-94 | 270 |
| MS.gene066940.t1 | MTR_8g045560 | 82.051 | 156 | 28 | 0 | 1 | 156 | 1 | 156 | 3.67e-93 | 267 |
| MS.gene066940.t1 | MTR_8g045520 | 75.159 | 157 | 38 | 1 | 1 | 156 | 1 | 157 | 1.77e-85 | 247 |
| MS.gene066940.t1 | MTR_8g045490 | 71.975 | 157 | 42 | 2 | 1 | 156 | 1 | 156 | 9.65e-82 | 238 |
| MS.gene066940.t1 | MTR_8g045400 | 71.338 | 157 | 43 | 2 | 1 | 156 | 1 | 156 | 1.99e-80 | 234 |
| MS.gene066940.t1 | MTR_8g045570 | 68.421 | 152 | 47 | 1 | 1 | 151 | 1 | 152 | 1.32e-76 | 225 |
| MS.gene066940.t1 | MTR_8g045555 | 69.079 | 152 | 46 | 1 | 1 | 151 | 1 | 152 | 1.35e-76 | 225 |
| MS.gene066940.t1 | MTR_8g045300 | 66.026 | 156 | 52 | 1 | 1 | 155 | 1 | 156 | 1.08e-75 | 223 |
| MS.gene066940.t1 | MTR_1g030810 | 41.830 | 153 | 85 | 3 | 1 | 150 | 1 | 152 | 4.14e-39 | 130 |
| MS.gene066940.t1 | MTR_1g030820 | 38.562 | 153 | 90 | 3 | 1 | 150 | 1 | 152 | 2.40e-37 | 125 |
| MS.gene066940.t1 | MTR_1g030840 | 37.821 | 156 | 88 | 5 | 1 | 148 | 1 | 155 | 4.49e-28 | 102 |
| MS.gene066940.t1 | MTR_8g012550 | 34.667 | 150 | 94 | 4 | 6 | 153 | 8 | 155 | 2.94e-26 | 97.4 |
| MS.gene066940.t1 | MTR_1g031640 | 37.838 | 148 | 82 | 6 | 7 | 151 | 7 | 147 | 4.69e-22 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066940.t1 | AT5G28010 | 35.948 | 153 | 94 | 4 | 3 | 152 | 15 | 166 | 4.12e-26 | 97.4 |
| MS.gene066940.t1 | AT5G28010 | 35.948 | 153 | 94 | 4 | 3 | 152 | 15 | 166 | 4.12e-26 | 97.4 |
| MS.gene066940.t1 | AT1G70890 | 37.255 | 153 | 92 | 4 | 3 | 152 | 7 | 158 | 2.23e-24 | 92.8 |
| MS.gene066940.t1 | AT1G70840 | 35.948 | 153 | 94 | 4 | 3 | 152 | 20 | 171 | 3.78e-24 | 92.4 |
| MS.gene066940.t1 | AT1G70830 | 36.538 | 156 | 89 | 5 | 3 | 152 | 22 | 173 | 2.93e-23 | 90.1 |
| MS.gene066940.t1 | AT1G70830 | 36.306 | 157 | 90 | 5 | 3 | 153 | 22 | 174 | 3.14e-23 | 90.9 |
| MS.gene066940.t1 | AT5G28000 | 33.987 | 153 | 97 | 4 | 3 | 152 | 13 | 164 | 3.74e-23 | 89.7 |
| MS.gene066940.t1 | AT1G70830 | 36.306 | 157 | 90 | 5 | 3 | 153 | 22 | 174 | 2.38e-22 | 89.7 |
| MS.gene066940.t1 | AT1G70830 | 36.538 | 156 | 89 | 5 | 3 | 152 | 137 | 288 | 3.71e-22 | 90.1 |
| MS.gene066940.t1 | AT1G70830 | 35.052 | 97 | 61 | 2 | 59 | 153 | 31 | 127 | 3.07e-12 | 63.2 |
| MS.gene066940.t1 | AT1G70830 | 36.306 | 157 | 90 | 5 | 3 | 153 | 22 | 174 | 4.40e-22 | 90.5 |
| MS.gene066940.t1 | AT1G70830 | 36.538 | 156 | 89 | 5 | 3 | 152 | 184 | 335 | 1.11e-21 | 89.4 |
| MS.gene066940.t1 | AT1G70850 | 37.671 | 146 | 81 | 5 | 13 | 152 | 175 | 316 | 1.38e-21 | 89.0 |
| MS.gene066940.t1 | AT1G70850 | 34.641 | 153 | 90 | 5 | 3 | 149 | 9 | 157 | 1.33e-20 | 86.3 |
| MS.gene066940.t1 | AT1G70850 | 37.671 | 146 | 81 | 5 | 13 | 152 | 175 | 316 | 1.38e-21 | 89.0 |
| MS.gene066940.t1 | AT1G70850 | 34.641 | 153 | 90 | 5 | 3 | 149 | 9 | 157 | 1.33e-20 | 86.3 |
| MS.gene066940.t1 | AT1G70850 | 34.416 | 154 | 91 | 5 | 3 | 150 | 9 | 158 | 5.15e-21 | 85.9 |
| MS.gene066940.t1 | AT1G70870 | 45.833 | 96 | 50 | 2 | 56 | 150 | 44 | 138 | 1.27e-20 | 82.4 |
| MS.gene066940.t1 | AT4G23670 | 33.750 | 160 | 88 | 6 | 1 | 151 | 1 | 151 | 3.47e-20 | 81.6 |
| MS.gene066940.t1 | AT1G14930 | 29.560 | 159 | 104 | 5 | 1 | 155 | 1 | 155 | 6.26e-20 | 81.3 |
| MS.gene066940.t1 | AT2G01520 | 29.677 | 155 | 101 | 5 | 1 | 151 | 1 | 151 | 1.10e-18 | 77.8 |
| MS.gene066940.t1 | AT1G23120 | 29.078 | 141 | 94 | 4 | 10 | 149 | 10 | 145 | 3.25e-17 | 73.9 |
| MS.gene066940.t1 | AT2G01530 | 30.323 | 155 | 100 | 5 | 1 | 151 | 1 | 151 | 6.53e-17 | 73.2 |
| MS.gene066940.t1 | AT1G23120 | 29.078 | 141 | 94 | 4 | 10 | 149 | 60 | 195 | 9.15e-17 | 73.9 |
| MS.gene066940.t1 | AT4G14060 | 29.677 | 155 | 101 | 5 | 1 | 151 | 1 | 151 | 9.78e-17 | 72.8 |
| MS.gene066940.t1 | AT4G23680 | 29.221 | 154 | 101 | 5 | 1 | 150 | 1 | 150 | 1.56e-16 | 72.4 |
| MS.gene066940.t1 | AT1G70880 | 30.065 | 153 | 103 | 4 | 3 | 152 | 8 | 159 | 1.71e-16 | 72.4 |
| MS.gene066940.t1 | AT1G14940 | 28.302 | 159 | 106 | 5 | 1 | 155 | 1 | 155 | 1.88e-16 | 72.0 |
| MS.gene066940.t1 | AT1G24020 | 30.921 | 152 | 102 | 3 | 1 | 150 | 1 | 151 | 2.16e-16 | 72.0 |
| MS.gene066940.t1 | AT1G24020 | 30.921 | 152 | 102 | 3 | 1 | 150 | 1 | 151 | 2.16e-16 | 72.0 |
| MS.gene066940.t1 | AT1G23130 | 27.517 | 149 | 105 | 3 | 3 | 149 | 10 | 157 | 2.03e-15 | 69.7 |
| MS.gene066940.t1 | AT1G14950 | 27.044 | 159 | 108 | 5 | 1 | 155 | 1 | 155 | 6.72e-15 | 68.2 |
| MS.gene066940.t1 | AT1G30990 | 27.815 | 151 | 104 | 5 | 1 | 149 | 1 | 148 | 1.32e-14 | 67.4 |
| MS.gene066940.t1 | AT1G35260 | 29.932 | 147 | 92 | 5 | 9 | 149 | 8 | 149 | 1.60e-14 | 67.0 |
| MS.gene066940.t1 | AT3G26460 | 29.677 | 155 | 102 | 4 | 1 | 151 | 1 | 152 | 3.33e-14 | 66.2 |
| MS.gene066940.t1 | AT1G14960 | 25.161 | 155 | 112 | 4 | 1 | 153 | 1 | 153 | 2.23e-12 | 61.6 |
| MS.gene066940.t1 | AT3G26450 | 26.923 | 156 | 105 | 6 | 1 | 151 | 1 | 152 | 9.02e-12 | 59.7 |
Find 31 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATGACCATCAATATCTT+TGG | 0.335693 | 8.4:-55336965 | None:intergenic |
| AAGATAACTTTCAAGCTGTT+TGG | 0.342098 | 8.4:+55336787 | MS.gene066940:CDS |
| ATGGAAGTTCTGCTGTTAGA+TGG | 0.407851 | 8.4:+55336869 | MS.gene066940:CDS |
| TATCTTTGGTTCCTTTGCTC+AGG | 0.433031 | 8.4:-55336951 | None:intergenic |
| TGGAGATATTGAAAACTATA+AGG | 0.439418 | 8.4:+55336810 | MS.gene066940:CDS |
| AGGTAGTCCATCCAGCCATT+TGG | 0.459022 | 8.4:-55336931 | None:intergenic |
| AAAGGAACCAAAGATATTGA+TGG | 0.479926 | 8.4:+55336958 | MS.gene066940:CDS |
| ATAACTTTCAAGCTGTTTGG+TGG | 0.481618 | 8.4:+55336790 | MS.gene066940:CDS |
| TAAACATTGGACTTATGTCA+TGG | 0.493433 | 8.4:+55335151 | MS.gene066940:CDS |
| GGTAAACTTATCACTGAACT+TGG | 0.495374 | 8.4:+55334999 | MS.gene066940:CDS |
| AGATTGGCATCACACTGATT+CGG | 0.509801 | 8.4:+55335127 | MS.gene066940:CDS |
| TAACATAACAACAGATGGTA+AGG | 0.518649 | 8.4:+55336717 | MS.gene066940:intron |
| AGCTTCATGAAGGAGAAGAT+TGG | 0.532439 | 8.4:+55335111 | MS.gene066940:CDS |
| ACACTGATTCGGTTAAACAT+TGG | 0.558454 | 8.4:+55335138 | MS.gene066940:CDS |
| CATCATACTAAGCTTCATGA+AGG | 0.577072 | 8.4:+55335101 | MS.gene066940:CDS |
| ATGTTGATACTCCAAATGGC+TGG | 0.578150 | 8.4:+55336920 | MS.gene066940:CDS |
| GAAGTGCTTAACAAGGCTGA+TGG | 0.580204 | 8.4:+55336850 | MS.gene066940:CDS |
| ATTGATGGTCATCTTGTCAA+GGG | 0.586933 | 8.4:+55336973 | MS.gene066940:CDS |
| TGATACTCCAAATGGCTGGA+TGG | 0.587093 | 8.4:+55336924 | MS.gene066940:CDS |
| AAACATTGGACTTATGTCAT+GGG | 0.587276 | 8.4:+55335152 | MS.gene066940:CDS |
| TATTGATGGTCATCTTGTCA+AGG | 0.589389 | 8.4:+55336972 | MS.gene066940:CDS |
| GAGGATGTTGATACTCCAAA+TGG | 0.593330 | 8.4:+55336916 | MS.gene066940:CDS |
| GTAAACTTATCACTGAACTT+GGG | 0.617151 | 8.4:+55335000 | MS.gene066940:CDS |
| AGGTACACACATGCAATGAG+AGG | 0.626711 | 8.4:+55336737 | MS.gene066940:CDS |
| TGGATGGACTACCTGAGCAA+AGG | 0.638104 | 8.4:+55336940 | MS.gene066940:CDS |
| CATCTTAGAAGTGCTTAACA+AGG | 0.644958 | 8.4:+55336843 | MS.gene066940:CDS |
| TTGATGGTCATCTTGTCAAG+GGG | 0.646397 | 8.4:+55336974 | MS.gene066940:CDS |
| GAACTTGGGATCAAAACACC+CGG | 0.651017 | 8.4:+55335014 | MS.gene066940:CDS |
| GGTACACACATGCAATGAGA+GGG | 0.691358 | 8.4:+55336738 | MS.gene066940:CDS |
| TGATTATGAGAAGAACAATG+AGG | 0.694185 | 8.4:+55336897 | MS.gene066940:CDS |
| TGATGGTCATCTTGTCAAGG+GGG | 0.696400 | 8.4:+55336975 | MS.gene066940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTAATAAACGTATTA+TGG | - | chr8.4:55335519-55335538 | None:intergenic | 10.0% |
| !!! | AAAATGTTTTTTATTGTTTT+TGG | + | chr8.4:55336681-55336700 | MS.gene066940:intron | 10.0% |
| !! | AATGTTGAATATTTGAAAAT+GGG | + | chr8.4:55335566-55335585 | MS.gene066940:intron | 15.0% |
| !! | ATTATAAATGAAGTCAATAT+AGG | - | chr8.4:55335434-55335453 | None:intergenic | 15.0% |
| !! | GGGTAAAATTAAATAAAAAA+AGG | + | chr8.4:55335586-55335605 | MS.gene066940:intron | 15.0% |
| !!! | AAGAAAAATTATACTTTTCA+AGG | + | chr8.4:55335310-55335329 | MS.gene066940:intron | 15.0% |
| !!! | TAAGATAAAGTTTTTACTTT+TGG | + | chr8.4:55336596-55336615 | MS.gene066940:intron | 15.0% |
| !!! | TATTAAAGTCAAACTTTTAT+CGG | + | chr8.4:55336334-55336353 | MS.gene066940:intron | 15.0% |
| !! | ATCAAAAATCAAATATCACA+AGG | - | chr8.4:55336305-55336324 | None:intergenic | 20.0% |
| !! | ATCATAAAAACCTAATGATA+AGG | - | chr8.4:55336432-55336451 | None:intergenic | 20.0% |
| !! | ATTTATCTTTCTAGATCTAA+TGG | + | chr8.4:55335737-55335756 | MS.gene066940:intron | 20.0% |
| !! | GAATGTTGAATATTTGAAAA+TGG | + | chr8.4:55335565-55335584 | MS.gene066940:intron | 20.0% |
| !! | TATTACATACAACTCATATA+GGG | - | chr8.4:55335681-55335700 | None:intergenic | 20.0% |
| !!! | ATTATTGTATTTTCTCTCTT+TGG | - | chr8.4:55336112-55336131 | None:intergenic | 20.0% |
| !!! | TGGTGAAACTAATATTTTTA+AGG | + | chr8.4:55336457-55336476 | MS.gene066940:intron | 20.0% |
| !!! | TTAGGTTTTTATGATTTCTT+TGG | + | chr8.4:55336437-55336456 | MS.gene066940:intron | 20.0% |
| !!! | TTATTGTATTTTCTCTCTTT+GGG | - | chr8.4:55336111-55336130 | None:intergenic | 20.0% |
| ! | AATGCTAACAAATGTTCTTA+AGG | - | chr8.4:55336636-55336655 | None:intergenic | 25.0% |
| ! | ATAAAATTGCAGAATGATAG+AGG | + | chr8.4:55335975-55335994 | MS.gene066940:intron | 25.0% |
| ! | ATAGAGGGAAATTATTGTTA+AGG | + | chr8.4:55335991-55336010 | MS.gene066940:intron | 25.0% |
| ! | ATTACATACAACTCATATAG+GGG | - | chr8.4:55335680-55335699 | None:intergenic | 25.0% |
| ! | ATTGCCTTTATAAGTTCTTT+AGG | - | chr8.4:55335348-55335367 | None:intergenic | 25.0% |
| ! | CAAATCAAATTGTGTTCAAA+TGG | - | chr8.4:55336164-55336183 | None:intergenic | 25.0% |
| ! | CTATTACATACAACTCATAT+AGG | - | chr8.4:55335682-55335701 | None:intergenic | 25.0% |
| ! | TAAAATTGCAGAATGATAGA+GGG | + | chr8.4:55335976-55335995 | MS.gene066940:intron | 25.0% |
| ! | TGGAGATATTGAAAACTATA+AGG | + | chr8.4:55336810-55336829 | MS.gene066940:CDS | 25.0% |
| ! | TTCTTAGACAAATTGTAGTA+CGG | - | chr8.4:55335295-55335314 | None:intergenic | 25.0% |
| !!! | AACTTGTTCACTTTTTGTTT+TGG | - | chr8.4:55336223-55336242 | None:intergenic | 25.0% |
| !!! | AATTTTTCGATCTAGTGTAA+TGG | + | chr8.4:55335845-55335864 | MS.gene066940:intron | 25.0% |
| !!! | ATTTTACTAATGAAGAGTAC+AGG | + | chr8.4:55336072-55336091 | MS.gene066940:intron | 25.0% |
| !!! | CTGTTTAGGTTATTTTGATT+AGG | - | chr8.4:55336194-55336213 | None:intergenic | 25.0% |
| !!! | TACTTTTCAAGGCAATAATA+TGG | + | chr8.4:55335321-55335340 | MS.gene066940:intron | 25.0% |
| !!! | TATTTGATTTTTGATCCTTG+TGG | + | chr8.4:55336310-55336329 | MS.gene066940:intron | 25.0% |
| AAACATTGGACTTATGTCAT+GGG | + | chr8.4:55335152-55335171 | MS.gene066940:CDS | 30.0% | |
| AAAGGAACCAAAGATATTGA+TGG | + | chr8.4:55336958-55336977 | MS.gene066940:CDS | 30.0% | |
| AACAGAGATAATGTGCTTTA+TGG | + | chr8.4:55336263-55336282 | MS.gene066940:intron | 30.0% | |
| AAGATAACTTTCAAGCTGTT+TGG | + | chr8.4:55336787-55336806 | MS.gene066940:CDS | 30.0% | |
| AAGATGACCATCAATATCTT+TGG | - | chr8.4:55336968-55336987 | None:intergenic | 30.0% | |
| AATCAAACAAGATGATGACT+TGG | - | chr8.4:55335209-55335228 | None:intergenic | 30.0% | |
| CATTGTATGGATTTATGCTT+AGG | + | chr8.4:55335645-55335664 | MS.gene066940:intron | 30.0% | |
| CTTAGGGTTAATAAAACGTA+TGG | + | chr8.4:55336029-55336048 | MS.gene066940:intron | 30.0% | |
| GCTACAAAGTTAATCTCTTA+GGG | + | chr8.4:55336013-55336032 | MS.gene066940:intron | 30.0% | |
| GTAAACTTATCACTGAACTT+GGG | + | chr8.4:55335000-55335019 | MS.gene066940:CDS | 30.0% | |
| TAAACATTGGACTTATGTCA+TGG | + | chr8.4:55335151-55335170 | MS.gene066940:CDS | 30.0% | |
| TAACATAACAACAGATGGTA+AGG | + | chr8.4:55336717-55336736 | MS.gene066940:intron | 30.0% | |
| TAATTACATGGCACATATCT+AGG | + | chr8.4:55335873-55335892 | MS.gene066940:intron | 30.0% | |
| TGATTATGAGAAGAACAATG+AGG | + | chr8.4:55336897-55336916 | MS.gene066940:CDS | 30.0% | |
| TGGACCTAAAGAACTTATAA+AGG | + | chr8.4:55335341-55335360 | MS.gene066940:intron | 30.0% | |
| ! | GTAATGGAGAAGTAATTACA+TGG | + | chr8.4:55335861-55335880 | MS.gene066940:intron | 30.0% |
| ! | GTTTGACTTTAATAACCACA+AGG | - | chr8.4:55336328-55336347 | None:intergenic | 30.0% |
| ! | TAGTTTGAAGAACTTTTCAC+CGG | - | chr8.4:55335036-55335055 | None:intergenic | 30.0% |
| ! | TGATTTTAAACTATCCTGTG+AGG | + | chr8.4:55335925-55335944 | MS.gene066940:intron | 30.0% |
| !! | GTTGTATGTAATAGTTCTAG+TGG | + | chr8.4:55335688-55335707 | MS.gene066940:intron | 30.0% |
| !!! | TTGTTCACTTTTTGTTTTGG+TGG | - | chr8.4:55336220-55336239 | None:intergenic | 30.0% |
| AATCCTTAACTAGTGCTCTA+AGG | - | chr8.4:55336499-55336518 | None:intergenic | 35.0% | |
| ACCATCTGTTGTTATGTTAG+AGG | - | chr8.4:55336716-55336735 | None:intergenic | 35.0% | |
| ATAACTTTCAAGCTGTTTGG+TGG | + | chr8.4:55336790-55336809 | MS.gene066940:CDS | 35.0% | |
| ATCCTTAACTAGTGCTCTAA+GGG | - | chr8.4:55336498-55336517 | None:intergenic | 35.0% | |
| CATCATACTAAGCTTCATGA+AGG | + | chr8.4:55335101-55335120 | MS.gene066940:CDS | 35.0% | |
| GATTAACTTTGTAACCTCAC+AGG | - | chr8.4:55335942-55335961 | None:intergenic | 35.0% | |
| GGCTACAAAGTTAATCTCTT+AGG | + | chr8.4:55336012-55336031 | MS.gene066940:intron | 35.0% | |
| GGTAAACTTATCACTGAACT+TGG | + | chr8.4:55334999-55335018 | MS.gene066940:CDS | 35.0% | |
| TGGCACATATCTAGGTAAAA+CGG | + | chr8.4:55335881-55335900 | MS.gene066940:intron | 35.0% | |
| TGTGTTCAAATGGAACTTTG+TGG | - | chr8.4:55336154-55336173 | None:intergenic | 35.0% | |
| ! | AATTCAAGTTCGAGTTCAAC+TGG | + | chr8.4:55335796-55335815 | MS.gene066940:intron | 35.0% |
| ! | AGTTTGAAGAACTTTTCACC+GGG | - | chr8.4:55335035-55335054 | None:intergenic | 35.0% |
| ! | ATTGATGGTCATCTTGTCAA+GGG | + | chr8.4:55336973-55336992 | MS.gene066940:CDS | 35.0% |
| ! | GCATCGATATCCTTATCATT+AGG | + | chr8.4:55336419-55336438 | MS.gene066940:intron | 35.0% |
| ! | TATTGATGGTCATCTTGTCA+AGG | + | chr8.4:55336972-55336991 | MS.gene066940:CDS | 35.0% |
| !! | ACACTGATTCGGTTAAACAT+TGG | + | chr8.4:55335138-55335157 | MS.gene066940:CDS | 35.0% |
| !! | CATCTTAGAAGTGCTTAACA+AGG | + | chr8.4:55336843-55336862 | MS.gene066940:CDS | 35.0% |
| !! | TGCTACTTTAGTGCATTGTA+TGG | + | chr8.4:55335632-55335651 | MS.gene066940:intron | 35.0% |
| AGCTTCATGAAGGAGAAGAT+TGG | + | chr8.4:55335111-55335130 | MS.gene066940:CDS | 40.0% | |
| ATGGAACTTTGTGGTCGTAA+TGG | - | chr8.4:55336145-55336164 | None:intergenic | 40.0% | |
| ATGGAAGTTCTGCTGTTAGA+TGG | + | chr8.4:55336869-55336888 | MS.gene066940:CDS | 40.0% | |
| ATGTTGATACTCCAAATGGC+TGG | + | chr8.4:55336920-55336939 | MS.gene066940:CDS | 40.0% | |
| CTATACCAAGCAACTCATGT+GGG | + | chr8.4:55335772-55335791 | MS.gene066940:intron | 40.0% | |
| GAGGATGTTGATACTCCAAA+TGG | + | chr8.4:55336916-55336935 | MS.gene066940:CDS | 40.0% | |
| GCCTCTAACATAACAACAGA+TGG | + | chr8.4:55336712-55336731 | MS.gene066940:intron | 40.0% | |
| TATACCAAGCAACTCATGTG+GGG | + | chr8.4:55335773-55335792 | MS.gene066940:intron | 40.0% | |
| ! | AGATTGGCATCACACTGATT+CGG | + | chr8.4:55335127-55335146 | MS.gene066940:CDS | 40.0% |
| ! | TATCTTTGGTTCCTTTGCTC+AGG | - | chr8.4:55336954-55336973 | None:intergenic | 40.0% |
| ! | TTCCCTTAGAGCACTAGTTA+AGG | + | chr8.4:55336493-55336512 | MS.gene066940:intron | 40.0% |
| ! | TTGATGGTCATCTTGTCAAG+GGG | + | chr8.4:55336974-55336993 | MS.gene066940:CDS | 40.0% |
| !!! | TGTTTTGGTGGCAACTGTTT+AGG | - | chr8.4:55336208-55336227 | None:intergenic | 40.0% |
| AATTCCCCACATGAGTTGCT+TGG | - | chr8.4:55335780-55335799 | None:intergenic | 45.0% | |
| AGGTACACACATGCAATGAG+AGG | + | chr8.4:55336737-55336756 | MS.gene066940:CDS | 45.0% | |
| AGTTCAACTGGATGGTTGAG+GGG | + | chr8.4:55335808-55335827 | MS.gene066940:intron | 45.0% | |
| CATGAGTTGCTTGGTATAGC+AGG | - | chr8.4:55335771-55335790 | None:intergenic | 45.0% | |
| GAACTTGGGATCAAAACACC+CGG | + | chr8.4:55335014-55335033 | MS.gene066940:CDS | 45.0% | |
| GAGTTCAACTGGATGGTTGA+GGG | + | chr8.4:55335807-55335826 | MS.gene066940:intron | 45.0% | |
| GCTATACCAAGCAACTCATG+TGG | + | chr8.4:55335771-55335790 | MS.gene066940:intron | 45.0% | |
| GGTACACACATGCAATGAGA+GGG | + | chr8.4:55336738-55336757 | MS.gene066940:CDS | 45.0% | |
| TCATCTTGTCAAGGGGGAAA+AGG | + | chr8.4:55336981-55337000 | MS.gene066940:CDS | 45.0% | |
| TGATACTCCAAATGGCTGGA+TGG | + | chr8.4:55336924-55336943 | MS.gene066940:CDS | 45.0% | |
| TGATGGTCATCTTGTCAAGG+GGG | + | chr8.4:55336975-55336994 | MS.gene066940:CDS | 45.0% | |
| TTGCTTGGTATAGCAGGTGT+GGG | - | chr8.4:55335765-55335784 | None:intergenic | 45.0% | |
| ! | CAAGTTCGAGTTCAACTGGA+TGG | + | chr8.4:55335800-55335819 | MS.gene066940:intron | 45.0% |
| ! | GAAGTGCTTAACAAGGCTGA+TGG | + | chr8.4:55336850-55336869 | MS.gene066940:CDS | 45.0% |
| !! | TTAAAGTAATATTAAAAATA+AGG | - | chr8.4:55336660-55336679 | None:intergenic | 5.0% |
| AGGTAGTCCATCCAGCCATT+TGG | - | chr8.4:55336934-55336953 | None:intergenic | 50.0% | |
| CGAGTTCAACTGGATGGTTG+AGG | + | chr8.4:55335806-55335825 | MS.gene066940:intron | 50.0% | |
| GTTGCTTGGTATAGCAGGTG+TGG | - | chr8.4:55335766-55335785 | None:intergenic | 50.0% | |
| ! | GTTGAGGGGTAGTCTTGACT+TGG | + | chr8.4:55335822-55335841 | MS.gene066940:intron | 50.0% |
| !! | TGGATGGACTACCTGAGCAA+AGG | + | chr8.4:55336940-55336959 | MS.gene066940:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 55334987 | 55337014 | 55334987 | ID=MS.gene066940 |
| chr8.4 | mRNA | 55334987 | 55337014 | 55334987 | ID=MS.gene066940.t1;Parent=MS.gene066940 |
| chr8.4 | exon | 55334987 | 55335173 | 55334987 | ID=MS.gene066940.t1.exon1;Parent=MS.gene066940.t1 |
| chr8.4 | CDS | 55334987 | 55335173 | 55334987 | ID=cds.MS.gene066940.t1;Parent=MS.gene066940.t1 |
| chr8.4 | exon | 55336731 | 55337014 | 55336731 | ID=MS.gene066940.t1.exon2;Parent=MS.gene066940.t1 |
| chr8.4 | CDS | 55336731 | 55337014 | 55336731 | ID=cds.MS.gene066940.t1;Parent=MS.gene066940.t1 |
| Gene Sequence |
| Protein sequence |
