Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59863.t1 | XP_013445246.1 | 96.2 | 156 | 6 | 0 | 1 | 156 | 1 | 156 | 7.50E-84 | 319.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59863.t1 | Q941R6 | 35.3 | 153 | 95 | 4 | 3 | 152 | 20 | 171 | 6.6e-20 | 98.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59863.t1 | I3SJ62 | 96.2 | 156 | 6 | 0 | 1 | 156 | 1 | 156 | 5.4e-84 | 319.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060076 | MS.gene59863 | 0.803022 | 4.25E-49 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59863.t1 | MTR_8g045695 | 96.154 | 156 | 6 | 0 | 1 | 156 | 1 | 156 | 6.75e-111 | 311 |
MS.gene59863.t1 | MTR_8g045735 | 88.312 | 154 | 18 | 0 | 1 | 154 | 1 | 154 | 1.42e-101 | 288 |
MS.gene59863.t1 | MTR_8g045665 | 87.179 | 156 | 20 | 0 | 1 | 156 | 1 | 156 | 7.03e-100 | 284 |
MS.gene59863.t1 | MTR_8g045640 | 83.333 | 156 | 26 | 0 | 1 | 156 | 1 | 156 | 6.99e-96 | 274 |
MS.gene59863.t1 | MTR_8g045560 | 82.692 | 156 | 27 | 0 | 1 | 156 | 1 | 156 | 1.32e-94 | 270 |
MS.gene59863.t1 | MTR_8g045520 | 78.981 | 157 | 32 | 1 | 1 | 156 | 1 | 157 | 1.48e-89 | 258 |
MS.gene59863.t1 | MTR_8g045490 | 75.159 | 157 | 37 | 2 | 1 | 156 | 1 | 156 | 9.45e-86 | 248 |
MS.gene59863.t1 | MTR_8g045400 | 73.248 | 157 | 40 | 2 | 1 | 156 | 1 | 156 | 3.48e-83 | 241 |
MS.gene59863.t1 | MTR_8g045570 | 71.711 | 152 | 42 | 1 | 1 | 151 | 1 | 152 | 9.41e-81 | 235 |
MS.gene59863.t1 | MTR_8g045555 | 71.053 | 152 | 43 | 1 | 1 | 151 | 1 | 152 | 7.08e-80 | 233 |
MS.gene59863.t1 | MTR_8g045300 | 67.949 | 156 | 49 | 1 | 1 | 155 | 1 | 156 | 6.56e-79 | 231 |
MS.gene59863.t1 | MTR_1g030810 | 43.137 | 153 | 83 | 3 | 1 | 150 | 1 | 152 | 1.54e-39 | 131 |
MS.gene59863.t1 | MTR_1g030820 | 38.562 | 153 | 90 | 3 | 1 | 150 | 1 | 152 | 1.21e-37 | 126 |
MS.gene59863.t1 | MTR_1g030840 | 38.462 | 156 | 87 | 5 | 1 | 148 | 1 | 155 | 6.28e-29 | 104 |
MS.gene59863.t1 | MTR_8g012550 | 34.000 | 150 | 95 | 4 | 6 | 153 | 8 | 155 | 2.32e-26 | 97.8 |
MS.gene59863.t1 | MTR_1g031640 | 38.514 | 148 | 81 | 6 | 7 | 151 | 7 | 147 | 1.88e-22 | 87.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene59863.t1 | AT5G28010 | 35.948 | 153 | 94 | 4 | 3 | 152 | 15 | 166 | 1.27e-25 | 96.3 |
MS.gene59863.t1 | AT5G28010 | 35.948 | 153 | 94 | 4 | 3 | 152 | 15 | 166 | 1.27e-25 | 96.3 |
MS.gene59863.t1 | AT1G70840 | 35.294 | 153 | 95 | 4 | 3 | 152 | 20 | 171 | 9.76e-25 | 94.0 |
MS.gene59863.t1 | AT1G70830 | 36.601 | 153 | 93 | 4 | 3 | 152 | 22 | 173 | 2.61e-24 | 92.8 |
MS.gene59863.t1 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 3.83e-24 | 93.2 |
MS.gene59863.t1 | AT1G70890 | 35.948 | 153 | 94 | 4 | 3 | 152 | 7 | 158 | 6.07e-24 | 91.7 |
MS.gene59863.t1 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 1.70e-23 | 92.8 |
MS.gene59863.t1 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 4.34e-23 | 93.2 |
MS.gene59863.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 184 | 335 | 1.52e-21 | 89.0 |
MS.gene59863.t1 | AT5G28000 | 32.680 | 153 | 99 | 4 | 3 | 152 | 13 | 164 | 2.82e-22 | 87.4 |
MS.gene59863.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 137 | 288 | 5.28e-22 | 89.7 |
MS.gene59863.t1 | AT1G70830 | 32.990 | 97 | 63 | 2 | 59 | 153 | 31 | 127 | 3.56e-11 | 60.1 |
MS.gene59863.t1 | AT1G70850 | 34.667 | 150 | 94 | 4 | 3 | 149 | 9 | 157 | 1.04e-21 | 87.8 |
MS.gene59863.t1 | AT1G70850 | 34.667 | 150 | 94 | 4 | 3 | 149 | 9 | 157 | 2.33e-21 | 88.2 |
MS.gene59863.t1 | AT1G70850 | 35.664 | 143 | 88 | 4 | 13 | 152 | 175 | 316 | 7.32e-21 | 87.0 |
MS.gene59863.t1 | AT1G70850 | 34.667 | 150 | 94 | 4 | 3 | 149 | 9 | 157 | 2.33e-21 | 88.2 |
MS.gene59863.t1 | AT1G70850 | 35.664 | 143 | 88 | 4 | 13 | 152 | 175 | 316 | 7.32e-21 | 87.0 |
MS.gene59863.t1 | AT4G23670 | 32.680 | 153 | 99 | 4 | 1 | 151 | 1 | 151 | 1.99e-20 | 82.4 |
MS.gene59863.t1 | AT1G14930 | 29.299 | 157 | 107 | 4 | 1 | 155 | 1 | 155 | 2.63e-19 | 79.7 |
MS.gene59863.t1 | AT1G70870 | 34.839 | 155 | 79 | 5 | 1 | 150 | 1 | 138 | 6.98e-19 | 78.2 |
MS.gene59863.t1 | AT2G01520 | 29.412 | 153 | 104 | 4 | 1 | 151 | 1 | 151 | 1.07e-18 | 77.8 |
MS.gene59863.t1 | AT2G01530 | 30.719 | 153 | 102 | 4 | 1 | 151 | 1 | 151 | 9.47e-18 | 75.5 |
MS.gene59863.t1 | AT1G70880 | 29.412 | 153 | 104 | 4 | 3 | 152 | 8 | 159 | 3.86e-17 | 73.9 |
MS.gene59863.t1 | AT1G14940 | 28.662 | 157 | 108 | 4 | 1 | 155 | 1 | 155 | 5.89e-17 | 73.6 |
MS.gene59863.t1 | AT1G35260 | 30.612 | 147 | 91 | 5 | 9 | 149 | 8 | 149 | 2.25e-16 | 72.0 |
MS.gene59863.t1 | AT4G14060 | 28.758 | 153 | 105 | 4 | 1 | 151 | 1 | 151 | 2.29e-16 | 72.0 |
MS.gene59863.t1 | AT4G23680 | 28.947 | 152 | 104 | 4 | 1 | 150 | 1 | 150 | 2.93e-16 | 71.6 |
MS.gene59863.t1 | AT1G23130 | 28.188 | 149 | 104 | 3 | 3 | 149 | 10 | 157 | 4.69e-16 | 71.2 |
MS.gene59863.t1 | AT1G24020 | 30.968 | 155 | 98 | 4 | 1 | 150 | 1 | 151 | 4.89e-16 | 71.2 |
MS.gene59863.t1 | AT1G24020 | 30.968 | 155 | 98 | 4 | 1 | 150 | 1 | 151 | 4.89e-16 | 71.2 |
MS.gene59863.t1 | AT1G14950 | 28.025 | 157 | 109 | 4 | 1 | 155 | 1 | 155 | 7.89e-16 | 70.5 |
MS.gene59863.t1 | AT1G23120 | 28.667 | 150 | 99 | 5 | 3 | 149 | 1 | 145 | 1.71e-15 | 69.3 |
MS.gene59863.t1 | AT1G23120 | 27.660 | 141 | 96 | 4 | 10 | 149 | 60 | 195 | 4.49e-15 | 69.7 |
MS.gene59863.t1 | AT1G30990 | 27.815 | 151 | 104 | 5 | 1 | 149 | 1 | 148 | 1.52e-13 | 64.3 |
MS.gene59863.t1 | AT1G14960 | 26.452 | 155 | 110 | 4 | 1 | 153 | 1 | 153 | 8.47e-13 | 62.4 |
MS.gene59863.t1 | AT1G35310 | 27.338 | 139 | 97 | 4 | 13 | 149 | 12 | 148 | 1.56e-12 | 62.0 |
MS.gene59863.t1 | AT3G26460 | 26.797 | 153 | 109 | 3 | 1 | 151 | 1 | 152 | 2.21e-12 | 61.6 |
MS.gene59863.t1 | AT3G26450 | 24.675 | 154 | 111 | 5 | 1 | 151 | 1 | 152 | 4.16e-11 | 58.2 |
Find 28 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGGAAATTCTGCTGTTAGA+TGG | 0.411619 | 8.3:+53668768 | MS.gene59863:CDS |
GGTAAACTTATTACTGAACT+TGG | 0.415223 | 8.3:+53667476 | MS.gene59863:CDS |
AAAATCACATACAAGCTGTT+TGG | 0.429054 | 8.3:+53668686 | MS.gene59863:CDS |
TGGAGATATTGAAAACTATA+AGG | 0.439418 | 8.3:+53668709 | MS.gene59863:CDS |
AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8.3:+53667629 | MS.gene59863:CDS |
AGGTAGTCCATCCATCCATT+TGG | 0.478602 | 8.3:-53668830 | None:intergenic |
AGCTTCATGAGGGTGAAGAT+TGG | 0.493681 | 8.3:+53667588 | MS.gene59863:CDS |
TCATCTTGTCAAAGGGGAAA+AGG | 0.504175 | 8.3:+53668880 | MS.gene59863:CDS |
AGATTGGCATCATACTGATT+CGG | 0.504369 | 8.3:+53667604 | MS.gene59863:CDS |
AAGAGCACTAGAGATATTGA+TGG | 0.505384 | 8.3:+53668857 | MS.gene59863:CDS |
TTGATGGTCATCTTGTCAAA+GGG | 0.506740 | 8.3:+53668873 | MS.gene59863:CDS |
ATCACATACAAGCTGTTTGG+TGG | 0.517987 | 8.3:+53668689 | MS.gene59863:CDS |
ATCTTCACCCTCATGAAGCT+TGG | 0.519812 | 8.3:-53667585 | None:intergenic |
GTAAACTTATTACTGAACTT+GGG | 0.542207 | 8.3:+53667477 | MS.gene59863:CDS |
ATTGATGGTCATCTTGTCAA+AGG | 0.543582 | 8.3:+53668872 | MS.gene59863:CDS |
GAGGATGTTGATACTCCAAA+TGG | 0.546873 | 8.3:+53668815 | MS.gene59863:CDS |
AGTTTGTAGAACTTGTCAGC+TGG | 0.569465 | 8.3:-53667509 | None:intergenic |
TATCTCTAGTGCTCTTGCTA+AGG | 0.569595 | 8.3:-53668850 | None:intergenic |
GAAGTGCTTAACAAGGCTGA+TGG | 0.573383 | 8.3:+53668749 | MS.gene59863:CDS |
TGATACTCCAAATGGATGGA+TGG | 0.602025 | 8.3:+53668823 | MS.gene59863:CDS |
ATACTGATTCGGTTAAACAC+TGG | 0.606046 | 8.3:+53667615 | MS.gene59863:CDS |
TCATCATACCAAGCTTCATG+AGG | 0.610699 | 8.3:+53667577 | MS.gene59863:CDS |
ATGTTGATACTCCAAATGGA+TGG | 0.627228 | 8.3:+53668819 | MS.gene59863:CDS |
CATCATACCAAGCTTCATGA+GGG | 0.642119 | 8.3:+53667578 | MS.gene59863:CDS |
CATCTTAGAAGTGCTTAACA+AGG | 0.644958 | 8.3:+53668742 | MS.gene59863:CDS |
TGATGGTCATCTTGTCAAAG+GGG | 0.652198 | 8.3:+53668874 | MS.gene59863:CDS |
TGACATAACAACAGATGGCG+AGG | 0.663434 | 8.3:+53668616 | MS.gene59863:intron |
TGATTATGAGAAGAACAATG+AGG | 0.694185 | 8.3:+53668796 | MS.gene59863:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTTACTATAAAATAGTA+AGG | + | chr8.3:53668386-53668405 | MS.gene59863:intron | 10.0% |
!! | TTATCTTATTATAATATTTC+TGG | + | chr8.3:53668524-53668543 | MS.gene59863:intron | 10.0% |
!!! | AAAACTTATTTTATTCTTTT+TGG | + | chr8.3:53668580-53668599 | MS.gene59863:intron | 10.0% |
!!! | TTATTTTACTAAAAACTTTA+AGG | - | chr8.3:53668291-53668310 | None:intergenic | 10.0% |
!! | AGATAATCTATATAAAAAGT+AGG | + | chr8.3:53668224-53668243 | MS.gene59863:intron | 15.0% |
!! | GATAATCTATATAAAAAGTA+GGG | + | chr8.3:53668225-53668244 | MS.gene59863:intron | 15.0% |
!! | TATAGTAATAAAAAGAAGAT+TGG | + | chr8.3:53667739-53667758 | MS.gene59863:intron | 15.0% |
!!! | GAATAAAATAAGTTTTTCAA+AGG | - | chr8.3:53668576-53668595 | None:intergenic | 15.0% |
!! | CATCATATAAGATCTTTAAA+AGG | + | chr8.3:53668427-53668446 | MS.gene59863:intron | 20.0% |
! | AAAAAATTATACTCGTACCA+TGG | - | chr8.3:53668165-53668184 | None:intergenic | 25.0% |
! | AGTAATAAAAAGAAGATTGG+TGG | + | chr8.3:53667742-53667761 | MS.gene59863:intron | 25.0% |
! | GTAAACTTATTACTGAACTT+GGG | + | chr8.3:53667477-53667496 | MS.gene59863:CDS | 25.0% |
! | GTAATAAAAAGAAGATTGGT+GGG | + | chr8.3:53667743-53667762 | MS.gene59863:intron | 25.0% |
! | TATCAAACAAGATGATGATT+TGG | - | chr8.3:53667681-53667700 | None:intergenic | 25.0% |
! | TCTTCGTTATAGAATTCATT+TGG | - | chr8.3:53667779-53667798 | None:intergenic | 25.0% |
! | TGGAGATATTGAAAACTATA+AGG | + | chr8.3:53668709-53668728 | MS.gene59863:CDS | 25.0% |
! | TTATCTCTAGACAAAAAATC+TGG | - | chr8.3:53668210-53668229 | None:intergenic | 25.0% |
!!! | ATCTTTAAAAGGTGTTTTAG+AGG | + | chr8.3:53668438-53668457 | MS.gene59863:intron | 25.0% |
AAAATCACATACAAGCTGTT+TGG | + | chr8.3:53668686-53668705 | MS.gene59863:CDS | 30.0% | |
GGTAAACTTATTACTGAACT+TGG | + | chr8.3:53667476-53667495 | MS.gene59863:CDS | 30.0% | |
GTTTGTATGATATGATCCTT+CGG | + | chr8.3:53668247-53668266 | MS.gene59863:intron | 30.0% | |
TATCGAAATCATTGTACACA+AGG | + | chr8.3:53667957-53667976 | MS.gene59863:intron | 30.0% | |
TGATTATGAGAAGAACAATG+AGG | + | chr8.3:53668796-53668815 | MS.gene59863:CDS | 30.0% | |
AAACACTGGACTTATGTCAT+AGG | + | chr8.3:53667629-53667648 | MS.gene59863:CDS | 35.0% | |
AAAGCAACAAATGACCCTAA+AGG | + | chr8.3:53668107-53668126 | MS.gene59863:intron | 35.0% | |
AGTAGCATCTCTTTCCTTTA+GGG | - | chr8.3:53668124-53668143 | None:intergenic | 35.0% | |
ATGGAAATTCTGCTGTTAGA+TGG | + | chr8.3:53668768-53668787 | MS.gene59863:CDS | 35.0% | |
ATGTTGATACTCCAAATGGA+TGG | + | chr8.3:53668819-53668838 | MS.gene59863:CDS | 35.0% | |
! | AGATTGGCATCATACTGATT+CGG | + | chr8.3:53667604-53667623 | MS.gene59863:CDS | 35.0% |
! | ATTGATGGTCATCTTGTCAA+AGG | + | chr8.3:53668872-53668891 | MS.gene59863:CDS | 35.0% |
! | TTGATGGTCATCTTGTCAAA+GGG | + | chr8.3:53668873-53668892 | MS.gene59863:CDS | 35.0% |
!! | AAGAGCACTAGAGATATTGA+TGG | + | chr8.3:53668857-53668876 | MS.gene59863:CDS | 35.0% |
!! | ATACTGATTCGGTTAAACAC+TGG | + | chr8.3:53667615-53667634 | MS.gene59863:CDS | 35.0% |
!! | CATCTTAGAAGTGCTTAACA+AGG | + | chr8.3:53668742-53668761 | MS.gene59863:CDS | 35.0% |
AACCACCTTTGTATTCACCA+TGG | + | chr8.3:53668145-53668164 | MS.gene59863:intron | 40.0% | |
AGTTTGTAGAACTTGTCAGC+TGG | - | chr8.3:53667512-53667531 | None:intergenic | 40.0% | |
ATCACATACAAGCTGTTTGG+TGG | + | chr8.3:53668689-53668708 | MS.gene59863:CDS | 40.0% | |
CATCATACCAAGCTTCATGA+GGG | + | chr8.3:53667578-53667597 | MS.gene59863:CDS | 40.0% | |
GAGGATGTTGATACTCCAAA+TGG | + | chr8.3:53668815-53668834 | MS.gene59863:CDS | 40.0% | |
GAGTAGCATCTCTTTCCTTT+AGG | - | chr8.3:53668125-53668144 | None:intergenic | 40.0% | |
TACCATGGTGAATACAAAGG+TGG | - | chr8.3:53668150-53668169 | None:intergenic | 40.0% | |
TATCTCTAGTGCTCTTGCTA+AGG | - | chr8.3:53668853-53668872 | None:intergenic | 40.0% | |
TCATCATACCAAGCTTCATG+AGG | + | chr8.3:53667577-53667596 | MS.gene59863:CDS | 40.0% | |
TCATCTTGTCAAAGGGGAAA+AGG | + | chr8.3:53668880-53668899 | MS.gene59863:CDS | 40.0% | |
TCGTACCATGGTGAATACAA+AGG | - | chr8.3:53668153-53668172 | None:intergenic | 40.0% | |
TGAGACTGATCTAACAACGA+AGG | + | chr8.3:53667816-53667835 | MS.gene59863:intron | 40.0% | |
TGATACTCCAAATGGATGGA+TGG | + | chr8.3:53668823-53668842 | MS.gene59863:CDS | 40.0% | |
TGATGGTCATCTTGTCAAAG+GGG | + | chr8.3:53668874-53668893 | MS.gene59863:CDS | 40.0% | |
TTGTACACAAGGTGAAGTAC+TGG | + | chr8.3:53667968-53667987 | MS.gene59863:intron | 40.0% | |
! | CGTCTTTAGACATTTTCCGA+AGG | - | chr8.3:53668266-53668285 | None:intergenic | 40.0% |
AGCTTCATGAGGGTGAAGAT+TGG | + | chr8.3:53667588-53667607 | MS.gene59863:CDS | 45.0% | |
AGGTAGTCCATCCATCCATT+TGG | - | chr8.3:53668833-53668852 | None:intergenic | 45.0% | |
ATCTTCACCCTCATGAAGCT+TGG | - | chr8.3:53667588-53667607 | None:intergenic | 45.0% | |
GCCATCTGTTGTTATGTCAG+AGG | - | chr8.3:53668615-53668634 | None:intergenic | 45.0% | |
GCCTCTGACATAACAACAGA+TGG | + | chr8.3:53668611-53668630 | MS.gene59863:intron | 45.0% | |
TGACATAACAACAGATGGCG+AGG | + | chr8.3:53668616-53668635 | MS.gene59863:intron | 45.0% | |
! | GAAGTGCTTAACAAGGCTGA+TGG | + | chr8.3:53668749-53668768 | MS.gene59863:CDS | 45.0% |
!! | AAATAATATATATTATGAAT+GGG | - | chr8.3:53668062-53668081 | None:intergenic | 5.0% |
!! | AATATATATTATTTAGAAAA+AGG | + | chr8.3:53668068-53668087 | MS.gene59863:intron | 5.0% |
!! | AATTAATAAAAAAAAAGTAA+CGG | - | chr8.3:53668022-53668041 | None:intergenic | 5.0% |
!! | TAAATAATATATATTATGAA+TGG | - | chr8.3:53668063-53668082 | None:intergenic | 5.0% |
!!! | TAATTTAGAATTTTTTTAAT+TGG | + | chr8.3:53667860-53667879 | MS.gene59863:intron | 5.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 53667464 | 53668913 | 53667464 | ID=MS.gene59863 |
chr8.3 | mRNA | 53667464 | 53668913 | 53667464 | ID=MS.gene59863.t1;Parent=MS.gene59863 |
chr8.3 | exon | 53667464 | 53667650 | 53667464 | ID=MS.gene59863.t1.exon1;Parent=MS.gene59863.t1 |
chr8.3 | CDS | 53667464 | 53667650 | 53667464 | ID=cds.MS.gene59863.t1;Parent=MS.gene59863.t1 |
chr8.3 | exon | 53668630 | 53668913 | 53668630 | ID=MS.gene59863.t1.exon2;Parent=MS.gene59863.t1 |
chr8.3 | CDS | 53668630 | 53668913 | 53668630 | ID=cds.MS.gene59863.t1;Parent=MS.gene59863.t1 |
Gene Sequence |
Protein sequence |