Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016315.t1 | XP_013445246.1 | 93.6 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 3.00E-80 | 307.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016315.t1 | Q941R6 | 35.3 | 153 | 95 | 4 | 3 | 152 | 20 | 171 | 7.7e-21 | 101.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016315.t1 | I3SJ62 | 93.6 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 2.1e-80 | 307.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016315.t1 | MTR_8g045695 | 93.590 | 156 | 10 | 0 | 1 | 156 | 1 | 156 | 2.51e-106 | 300 |
MS.gene016315.t1 | MTR_8g045735 | 85.065 | 154 | 23 | 0 | 1 | 154 | 1 | 154 | 5.55e-98 | 279 |
MS.gene016315.t1 | MTR_8g045665 | 83.974 | 156 | 25 | 0 | 1 | 156 | 1 | 156 | 7.07e-96 | 274 |
MS.gene016315.t1 | MTR_8g045640 | 82.051 | 156 | 28 | 0 | 1 | 156 | 1 | 156 | 1.76e-92 | 265 |
MS.gene016315.t1 | MTR_8g045560 | 80.769 | 156 | 30 | 0 | 1 | 156 | 1 | 156 | 3.26e-91 | 262 |
MS.gene016315.t1 | MTR_8g045520 | 76.433 | 157 | 36 | 1 | 1 | 156 | 1 | 157 | 2.48e-85 | 247 |
MS.gene016315.t1 | MTR_8g045400 | 75.159 | 157 | 37 | 2 | 1 | 156 | 1 | 156 | 5.58e-85 | 246 |
MS.gene016315.t1 | MTR_8g045490 | 72.611 | 157 | 41 | 2 | 1 | 156 | 1 | 156 | 2.06e-81 | 237 |
MS.gene016315.t1 | MTR_8g045555 | 70.395 | 152 | 44 | 1 | 1 | 151 | 1 | 152 | 7.79e-77 | 225 |
MS.gene016315.t1 | MTR_8g045570 | 69.079 | 152 | 46 | 1 | 1 | 151 | 1 | 152 | 5.92e-76 | 223 |
MS.gene016315.t1 | MTR_8g045300 | 66.667 | 156 | 51 | 1 | 1 | 155 | 1 | 156 | 7.88e-76 | 223 |
MS.gene016315.t1 | MTR_1g030810 | 45.098 | 153 | 80 | 3 | 1 | 150 | 1 | 152 | 2.41e-40 | 133 |
MS.gene016315.t1 | MTR_1g030820 | 39.869 | 153 | 88 | 3 | 1 | 150 | 1 | 152 | 1.54e-37 | 126 |
MS.gene016315.t1 | MTR_1g030840 | 40.385 | 156 | 84 | 5 | 1 | 148 | 1 | 155 | 1.04e-30 | 108 |
MS.gene016315.t1 | MTR_8g012550 | 32.667 | 150 | 97 | 4 | 6 | 153 | 8 | 155 | 4.61e-25 | 94.4 |
MS.gene016315.t1 | MTR_1g031640 | 38.514 | 148 | 81 | 6 | 7 | 151 | 7 | 147 | 5.45e-23 | 89.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene016315.t1 | AT1G70840 | 35.294 | 153 | 95 | 4 | 3 | 152 | 20 | 171 | 1.90e-25 | 95.9 |
MS.gene016315.t1 | AT5G28010 | 35.294 | 153 | 95 | 4 | 3 | 152 | 15 | 166 | 2.08e-25 | 95.5 |
MS.gene016315.t1 | AT5G28010 | 35.294 | 153 | 95 | 4 | 3 | 152 | 15 | 166 | 2.08e-25 | 95.5 |
MS.gene016315.t1 | AT1G70830 | 36.601 | 153 | 93 | 4 | 3 | 152 | 22 | 173 | 3.85e-25 | 95.1 |
MS.gene016315.t1 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 5.88e-25 | 95.5 |
MS.gene016315.t1 | AT1G70890 | 35.948 | 153 | 94 | 4 | 3 | 152 | 7 | 158 | 1.33e-24 | 93.2 |
MS.gene016315.t1 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 4.26e-24 | 94.4 |
MS.gene016315.t1 | AT1G70830 | 36.364 | 154 | 94 | 4 | 3 | 153 | 22 | 174 | 7.52e-24 | 95.1 |
MS.gene016315.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 184 | 335 | 2.42e-22 | 91.3 |
MS.gene016315.t1 | AT1G70830 | 35.294 | 153 | 95 | 4 | 3 | 152 | 137 | 288 | 7.36e-23 | 91.7 |
MS.gene016315.t1 | AT5G28000 | 32.026 | 153 | 100 | 4 | 3 | 152 | 13 | 164 | 5.78e-22 | 86.7 |
MS.gene016315.t1 | AT4G23670 | 34.641 | 153 | 96 | 4 | 1 | 151 | 1 | 151 | 8.91e-22 | 85.9 |
MS.gene016315.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 2.31e-21 | 87.0 |
MS.gene016315.t1 | AT1G14930 | 31.210 | 157 | 104 | 4 | 1 | 155 | 1 | 155 | 3.46e-21 | 84.3 |
MS.gene016315.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 5.54e-21 | 87.4 |
MS.gene016315.t1 | AT1G70850 | 35.664 | 143 | 88 | 4 | 13 | 152 | 175 | 316 | 9.08e-21 | 86.7 |
MS.gene016315.t1 | AT1G70850 | 34.000 | 150 | 95 | 4 | 3 | 149 | 9 | 157 | 5.54e-21 | 87.4 |
MS.gene016315.t1 | AT1G70850 | 35.664 | 143 | 88 | 4 | 13 | 152 | 175 | 316 | 9.08e-21 | 86.7 |
MS.gene016315.t1 | AT2G01520 | 31.373 | 153 | 101 | 4 | 1 | 151 | 1 | 151 | 1.36e-20 | 82.8 |
MS.gene016315.t1 | AT2G01530 | 32.680 | 153 | 99 | 4 | 1 | 151 | 1 | 151 | 1.35e-19 | 80.1 |
MS.gene016315.t1 | AT1G14940 | 29.299 | 157 | 107 | 4 | 1 | 155 | 1 | 155 | 1.39e-18 | 77.8 |
MS.gene016315.t1 | AT1G70870 | 35.484 | 155 | 78 | 5 | 1 | 150 | 1 | 138 | 2.64e-18 | 76.6 |
MS.gene016315.t1 | AT1G14950 | 29.936 | 157 | 106 | 4 | 1 | 155 | 1 | 155 | 9.03e-18 | 75.5 |
MS.gene016315.t1 | AT4G14060 | 30.065 | 153 | 103 | 4 | 1 | 151 | 1 | 151 | 1.03e-17 | 75.5 |
MS.gene016315.t1 | AT1G23130 | 28.188 | 149 | 104 | 3 | 3 | 149 | 10 | 157 | 1.98e-17 | 74.7 |
MS.gene016315.t1 | AT4G23680 | 30.263 | 152 | 102 | 4 | 1 | 150 | 1 | 150 | 5.11e-17 | 73.6 |
MS.gene016315.t1 | AT1G70880 | 28.758 | 153 | 105 | 4 | 3 | 152 | 8 | 159 | 8.31e-17 | 73.2 |
MS.gene016315.t1 | AT1G35260 | 29.861 | 144 | 96 | 4 | 9 | 149 | 8 | 149 | 1.10e-16 | 72.8 |
MS.gene016315.t1 | AT1G30990 | 29.801 | 151 | 101 | 5 | 1 | 149 | 1 | 148 | 8.49e-16 | 70.5 |
MS.gene016315.t1 | AT1G23120 | 27.333 | 150 | 101 | 5 | 3 | 149 | 1 | 145 | 1.52e-15 | 69.7 |
MS.gene016315.t1 | AT1G23120 | 26.241 | 141 | 98 | 4 | 10 | 149 | 60 | 195 | 3.80e-15 | 69.7 |
MS.gene016315.t1 | AT1G14960 | 28.387 | 155 | 107 | 4 | 1 | 153 | 1 | 153 | 7.32e-15 | 68.2 |
MS.gene016315.t1 | AT1G24020 | 30.968 | 155 | 98 | 4 | 1 | 150 | 1 | 151 | 5.07e-14 | 65.9 |
MS.gene016315.t1 | AT1G24020 | 30.968 | 155 | 98 | 4 | 1 | 150 | 1 | 151 | 5.07e-14 | 65.9 |
MS.gene016315.t1 | AT3G26460 | 26.797 | 153 | 109 | 3 | 1 | 151 | 1 | 152 | 1.31e-13 | 64.7 |
MS.gene016315.t1 | AT1G35310 | 28.058 | 139 | 96 | 4 | 13 | 149 | 12 | 148 | 2.09e-13 | 63.9 |
MS.gene016315.t1 | AT3G26450 | 25.325 | 154 | 110 | 5 | 1 | 151 | 1 | 152 | 1.10e-11 | 59.7 |
MS.gene016315.t1 | AT1G14940 | 26.115 | 157 | 96 | 4 | 1 | 155 | 1 | 139 | 1.39e-11 | 58.9 |
Find 29 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAATCACATACAAGCTATT+TGG | 0.273919 | 8.2:+56346528 | MS.gene016315:CDS |
GTCTTTAAGCTCATCTTAGA+AGG | 0.291250 | 8.2:+56346573 | MS.gene016315:CDS |
ATCTTCACCTTCATGAAGTT+TGG | 0.299460 | 8.2:-56345014 | None:intergenic |
AACATTAATGAAAGAGTTCA+TGG | 0.350725 | 8.2:+56344989 | MS.gene016315:CDS |
ATGGAAGTTCTGCTGTTAGA+TGG | 0.407851 | 8.2:+56346610 | MS.gene016315:CDS |
GGTAAGCTTATTACTGAACT+TGG | 0.435213 | 8.2:+56344905 | MS.gene016315:CDS |
TGGAGATATTGAAAACTATA+AGG | 0.439418 | 8.2:+56346551 | MS.gene016315:CDS |
AGGAAATCCATCCATCCATT+TGG | 0.440781 | 8.2:-56346672 | None:intergenic |
AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8.2:+56345058 | MS.gene016315:CDS |
AAAAGCACTAGAGATATTGA+TGG | 0.477335 | 8.2:+56346699 | MS.gene016315:CDS |
AACTTCATGAAGGTGAAGAT+TGG | 0.494334 | 8.2:+56345017 | MS.gene016315:CDS |
TCATCTTGTCAAAGGGGAAA+AGG | 0.504175 | 8.2:+56346722 | MS.gene016315:CDS |
AGATTGGCATCATACTGATT+CGG | 0.504369 | 8.2:+56345033 | MS.gene016315:CDS |
TTGATGGTCATCTTGTCAAA+GGG | 0.506740 | 8.2:+56346715 | MS.gene016315:CDS |
GAGGATATCGATACTCCAAA+TGG | 0.515854 | 8.2:+56346657 | MS.gene016315:CDS |
ATCACATACAAGCTATTTGG+TGG | 0.530005 | 8.2:+56346531 | MS.gene016315:CDS |
CGATACTCCAAATGGATGGA+TGG | 0.534738 | 8.2:+56346665 | MS.gene016315:CDS |
ATTGATGGTCATCTTGTCAA+AGG | 0.543582 | 8.2:+56346714 | MS.gene016315:CDS |
TCTTTAAGCTCATCTTAGAA+GGG | 0.545692 | 8.2:+56346574 | MS.gene016315:CDS |
GTAAGCTTATTACTGAACTT+GGG | 0.547162 | 8.2:+56344906 | MS.gene016315:CDS |
AGTTTGTAGAACTTGTCAGC+TGG | 0.569465 | 8.2:-56344938 | None:intergenic |
GAAGGGCTTAACAAGGCTGA+TGG | 0.584478 | 8.2:+56346591 | MS.gene016315:CDS |
ATATCGATACTCCAAATGGA+TGG | 0.593139 | 8.2:+56346661 | MS.gene016315:CDS |
ATACTGATTCGGTTAAACAC+TGG | 0.606046 | 8.2:+56345044 | MS.gene016315:CDS |
CATCTTAGAAGGGCTTAACA+AGG | 0.611102 | 8.2:+56346584 | MS.gene016315:CDS |
CATGGTGCCAAACTTCATGA+AGG | 0.632424 | 8.2:+56345007 | MS.gene016315:CDS |
TGATGGTCATCTTGTCAAAG+GGG | 0.652198 | 8.2:+56346716 | MS.gene016315:CDS |
TGACGTAATAACAGATGGCG+AGG | 0.668621 | 8.2:+56346458 | MS.gene016315:intron |
TGATTATGAGAAGAACAATG+AGG | 0.681814 | 8.2:+56346638 | MS.gene016315:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATATTATTCGAAAAAA+AGG | + | chr8.2:56345498-56345517 | MS.gene016315:intron | 10.0% |
!! | CTTAATTATCAAAAAAATAA+TGG | - | chr8.2:56345454-56345473 | None:intergenic | 10.0% |
!!! | ATTTTTAAAAAAATGTGAAA+GGG | + | chr8.2:56346085-56346104 | MS.gene016315:intron | 10.0% |
!!! | TATCTTATTATAATATTTTC+TGG | + | chr8.2:56346366-56346385 | MS.gene016315:intron | 10.0% |
!! | AAATTCTAAATTATGTCAAT+AGG | - | chr8.2:56345286-56345305 | None:intergenic | 15.0% |
!! | AAATTTACTATGAAATAGTA+GGG | + | chr8.2:56345780-56345799 | MS.gene016315:intron | 15.0% |
!! | GAATAATATATATTATGAGT+GGG | - | chr8.2:56345491-56345510 | None:intergenic | 15.0% |
!! | TAAATTTACTATGAAATAGT+AGG | + | chr8.2:56345779-56345798 | MS.gene016315:intron | 15.0% |
!! | TATAGTAATAAAAAGAAGAT+TGG | + | chr8.2:56345172-56345191 | MS.gene016315:intron | 15.0% |
!!! | ATCTTTAAATAGTATTTTAG+AGG | + | chr8.2:56346177-56346196 | MS.gene016315:intron | 15.0% |
!!! | CATTTTTAAAAAAATGTGAA+AGG | + | chr8.2:56346084-56346103 | MS.gene016315:intron | 15.0% |
!!! | GGATTTATATTTTGTTTTTT+AGG | + | chr8.2:56345998-56346017 | MS.gene016315:intron | 15.0% |
!!! | GTTTTCTATTACAAATTTTT+TGG | + | chr8.2:56345141-56345160 | MS.gene016315:intron | 15.0% |
!! | CGAATAATATATATTATGAG+TGG | - | chr8.2:56345492-56345511 | None:intergenic | 20.0% |
!! | TGTAAAATGACAATTTATGT+TGG | - | chr8.2:56345967-56345986 | None:intergenic | 20.0% |
!!! | CAATAAAATACGTTTTTCAA+AGG | - | chr8.2:56346418-56346437 | None:intergenic | 20.0% |
!!! | CCTTAAAGTTTTTAGTAAAA+CGG | + | chr8.2:56345711-56345730 | MS.gene016315:intron | 20.0% |
!!! | GTATAATTTTTTCTTTACGA+TGG | + | chr8.2:56345605-56345624 | MS.gene016315:intron | 20.0% |
!!! | TATGTATTTGATTTATGCTT+AGG | + | chr8.2:56345810-56345829 | MS.gene016315:intron | 20.0% |
!!! | TTTTGTTTTTTAGGATACAA+AGG | + | chr8.2:56346007-56346026 | MS.gene016315:intron | 20.0% |
! | AAAAAATTATACTCGTACCA+AGG | - | chr8.2:56345597-56345616 | None:intergenic | 25.0% |
! | AAAATCACATACAAGCTATT+TGG | + | chr8.2:56346528-56346547 | MS.gene016315:CDS | 25.0% |
! | AACAATGCATAATATATGCA+AGG | + | chr8.2:56346241-56346260 | MS.gene016315:intron | 25.0% |
! | AACATTAATGAAAGAGTTCA+TGG | + | chr8.2:56344989-56345008 | MS.gene016315:CDS | 25.0% |
! | AGTATCATTTGTTTCCTTTA+AGG | - | chr8.2:56345556-56345575 | None:intergenic | 25.0% |
! | GTTTGTATAATATGATCCTT+CGG | + | chr8.2:56345670-56345689 | MS.gene016315:intron | 25.0% |
! | TGGAGATATTGAAAACTATA+AGG | + | chr8.2:56346551-56346570 | MS.gene016315:CDS | 25.0% |
! | TTATCTCTAGACAAAAAATC+TGG | - | chr8.2:56345642-56345661 | None:intergenic | 25.0% |
! | TTGTCTAGAGATAAAAAGTA+GGG | + | chr8.2:56345648-56345667 | MS.gene016315:intron | 25.0% |
! | TTTGTCTAGAGATAAAAAGT+AGG | + | chr8.2:56345647-56345666 | MS.gene016315:intron | 25.0% |
!! | CCGTTTTACTAAAAACTTTA+AGG | - | chr8.2:56345714-56345733 | None:intergenic | 25.0% |
!! | TCATTTTACAACAGTAATGT+GGG | + | chr8.2:56345977-56345996 | MS.gene016315:intron | 25.0% |
!!! | GTGCTTTATTTAAAGATCTA+AGG | - | chr8.2:56346122-56346141 | None:intergenic | 25.0% |
AAAGCAACAAATGACCTTAA+AGG | + | chr8.2:56345539-56345558 | MS.gene016315:intron | 30.0% | |
AAATGATACTCAACCATCTT+TGG | + | chr8.2:56345566-56345585 | MS.gene016315:intron | 30.0% | |
AGCCATGAAATTACAAATCA+TGG | - | chr8.2:56345886-56345905 | None:intergenic | 30.0% | |
GTAAGCTTATTACTGAACTT+GGG | + | chr8.2:56344906-56344925 | MS.gene016315:CDS | 30.0% | |
TAATTTCATGGCTCTTTCTT+GGG | + | chr8.2:56345893-56345912 | MS.gene016315:intron | 30.0% | |
TCTTCGTTATAGATCTCATT+TGG | - | chr8.2:56345212-56345231 | None:intergenic | 30.0% | |
TCTTTAAGCTCATCTTAGAA+GGG | + | chr8.2:56346574-56346593 | MS.gene016315:CDS | 30.0% | |
TGATTATGAGAAGAACAATG+AGG | + | chr8.2:56346638-56346657 | MS.gene016315:CDS | 30.0% | |
! | TGCCATGATTTGTAATTTCA+TGG | + | chr8.2:56345881-56345900 | MS.gene016315:intron | 30.0% |
!! | AAAAGCACTAGAGATATTGA+TGG | + | chr8.2:56346699-56346718 | MS.gene016315:CDS | 30.0% |
!! | GTCATTTTACAACAGTAATG+TGG | + | chr8.2:56345976-56345995 | MS.gene016315:intron | 30.0% |
!!! | GAATGTCTCTTTCTTTTTTG+TGG | - | chr8.2:56346288-56346307 | None:intergenic | 30.0% |
AAACACTGGACTTATGTCAT+AGG | + | chr8.2:56345058-56345077 | MS.gene016315:CDS | 35.0% | |
AACTTCATGAAGGTGAAGAT+TGG | + | chr8.2:56345017-56345036 | MS.gene016315:CDS | 35.0% | |
ATATCGATACTCCAAATGGA+TGG | + | chr8.2:56346661-56346680 | MS.gene016315:CDS | 35.0% | |
ATCACATACAAGCTATTTGG+TGG | + | chr8.2:56346531-56346550 | MS.gene016315:CDS | 35.0% | |
ATCTTCACCTTCATGAAGTT+TGG | - | chr8.2:56345017-56345036 | None:intergenic | 35.0% | |
GGTAAGCTTATTACTGAACT+TGG | + | chr8.2:56344905-56344924 | MS.gene016315:CDS | 35.0% | |
GTAATTTCATGGCTCTTTCT+TGG | + | chr8.2:56345892-56345911 | MS.gene016315:intron | 35.0% | |
GTCTTTAAGCTCATCTTAGA+AGG | + | chr8.2:56346573-56346592 | MS.gene016315:CDS | 35.0% | |
TGATTTATGCTTAGGTGTTC+AGG | + | chr8.2:56345818-56345837 | MS.gene016315:intron | 35.0% | |
! | AGATTGGCATCATACTGATT+CGG | + | chr8.2:56345033-56345052 | MS.gene016315:CDS | 35.0% |
! | ATTGATGGTCATCTTGTCAA+AGG | + | chr8.2:56346714-56346733 | MS.gene016315:CDS | 35.0% |
! | TATCTCTAGTGCTTTTGCTA+AGG | - | chr8.2:56346695-56346714 | None:intergenic | 35.0% |
! | TTGATGGTCATCTTGTCAAA+GGG | + | chr8.2:56346715-56346734 | MS.gene016315:CDS | 35.0% |
!! | ATACTGATTCGGTTAAACAC+TGG | + | chr8.2:56345044-56345063 | MS.gene016315:CDS | 35.0% |
!!! | TGTCTCTTTCTTTTTTGTGG+TGG | - | chr8.2:56346285-56346304 | None:intergenic | 35.0% |
AACCATCTTTGGATTCACCT+TGG | + | chr8.2:56345577-56345596 | MS.gene016315:intron | 40.0% | |
AGGAAATCCATCCATCCATT+TGG | - | chr8.2:56346675-56346694 | None:intergenic | 40.0% | |
AGTTTGTAGAACTTGTCAGC+TGG | - | chr8.2:56344941-56344960 | None:intergenic | 40.0% | |
ATGGAAGTTCTGCTGTTAGA+TGG | + | chr8.2:56346610-56346629 | MS.gene016315:CDS | 40.0% | |
CAAGGTTCAGATTCAAATCC+CGG | + | chr8.2:56346259-56346278 | MS.gene016315:intron | 40.0% | |
CATCTTAGAAGGGCTTAACA+AGG | + | chr8.2:56346584-56346603 | MS.gene016315:CDS | 40.0% | |
CGAGACTGATCTAACAATGA+AGG | + | chr8.2:56345249-56345268 | MS.gene016315:intron | 40.0% | |
GAGGATATCGATACTCCAAA+TGG | + | chr8.2:56346657-56346676 | MS.gene016315:CDS | 40.0% | |
TACCAAGGTGAATCCAAAGA+TGG | - | chr8.2:56345582-56345601 | None:intergenic | 40.0% | |
TATCGAAATCATTGCACACG+AGG | + | chr8.2:56345389-56345408 | MS.gene016315:intron | 40.0% | |
TCATCTTGTCAAAGGGGAAA+AGG | + | chr8.2:56346722-56346741 | MS.gene016315:CDS | 40.0% | |
TGATGGTCATCTTGTCAAAG+GGG | + | chr8.2:56346716-56346735 | MS.gene016315:CDS | 40.0% | |
! | CGTCTTTAGACATTTTCCGA+AGG | - | chr8.2:56345689-56345708 | None:intergenic | 40.0% |
!!! | TCTTTCTTTTTTGTGGTGGC+CGG | - | chr8.2:56346281-56346300 | None:intergenic | 40.0% |
CGATACTCCAAATGGATGGA+TGG | + | chr8.2:56346665-56346684 | MS.gene016315:CDS | 45.0% | |
CTTGGGTGCAATGTATGCTT+GGG | + | chr8.2:56345910-56345929 | MS.gene016315:intron | 45.0% | |
GCCATCTGTTATTACGTCAG+AGG | - | chr8.2:56346457-56346476 | None:intergenic | 45.0% | |
GCCTCTGACGTAATAACAGA+TGG | + | chr8.2:56346453-56346472 | MS.gene016315:intron | 45.0% | |
TCTTGGGTGCAATGTATGCT+TGG | + | chr8.2:56345909-56345928 | MS.gene016315:intron | 45.0% | |
TGACGTAATAACAGATGGCG+AGG | + | chr8.2:56346458-56346477 | MS.gene016315:intron | 45.0% | |
! | CATGGTGCCAAACTTCATGA+AGG | + | chr8.2:56345007-56345026 | MS.gene016315:CDS | 45.0% |
!!! | CTTTCTTTTTTGTGGTGGCC+GGG | - | chr8.2:56346280-56346299 | None:intergenic | 45.0% |
!! | TAATAAGATAATAATAATAA+AGG | - | chr8.2:56346356-56346375 | None:intergenic | 5.0% |
!!! | TAATTTAGAATTTTTTTAAT+TGG | + | chr8.2:56345293-56345312 | MS.gene016315:intron | 5.0% |
CTTCGTGTGCTTAGCTCAGT+TGG | + | chr8.2:56346214-56346233 | MS.gene016315:intron | 50.0% | |
GAAGGGCTTAACAAGGCTGA+TGG | + | chr8.2:56346591-56346610 | MS.gene016315:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 56344893 | 56346755 | 56344893 | ID=MS.gene016315 |
chr8.2 | mRNA | 56344893 | 56346755 | 56344893 | ID=MS.gene016315.t1;Parent=MS.gene016315 |
chr8.2 | exon | 56344893 | 56345079 | 56344893 | ID=MS.gene016315.t1.exon1;Parent=MS.gene016315.t1 |
chr8.2 | CDS | 56344893 | 56345079 | 56344893 | ID=cds.MS.gene016315.t1;Parent=MS.gene016315.t1 |
chr8.2 | exon | 56346472 | 56346755 | 56346472 | ID=MS.gene016315.t1.exon2;Parent=MS.gene016315.t1 |
chr8.2 | CDS | 56346472 | 56346755 | 56346472 | ID=cds.MS.gene016315.t1;Parent=MS.gene016315.t1 |
Gene Sequence |
Protein sequence |