AlfalfaGEDB | MS.gene52600

M. sativa cultivar XinJiangDaYe / MS.gene52600

KEGG: K02836
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005737 GO:0006415 GO:0008079 GO:0008135 GO:0008150 GO:0009987 GO:0016043 GO:0016149 GO:0022411 GO:0032984 GO:0043624 GO:0043933 GO:0045182 GO:0071840 GO:0090079 GO:0097159 GO:0110165 GO:1901363
PFAM: PF00472.23 PF03462.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52600.t1	XP_003624209.1	95.8	472	14	2	3	468	4	475	7.90E-246	859.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52600.t1	Q9LVY0	77.2	408	88	2	61	468	54	456	4.3e-176	619.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52600.t1	G7KSD8	95.8	472	14	2	3	468	4	475	5.7e-246	859.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene52600	0.832393	9.70E-56	-1.69E-46
MS.gene049150	MS.gene52600	0.801968	7.01E-49	-1.69E-46
MS.gene049346	MS.gene52600	0.808125	3.61E-50	-1.69E-46
MS.gene049351	MS.gene52600	0.890953	6.18E-74	-1.69E-46
MS.gene049356	MS.gene52600	0.838918	2.16E-57	-1.69E-46
MS.gene049369	MS.gene52600	0.801686	8.01E-49	-1.69E-46
MS.gene049389	MS.gene52600	0.814721	1.33E-51	-1.69E-46
MS.gene049427	MS.gene52600	0.836647	8.28E-57	-1.69E-46
MS.gene049491	MS.gene52600	0.840057	1.09E-57	-1.69E-46
MS.gene049661	MS.gene52600	0.878694	2.28E-69	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene004045	MS.gene52600	PPI
MS.gene021114	MS.gene52600	PPI
MS.gene026015	MS.gene52600	PPI
MS.gene050844	MS.gene52600	PPI
MS.gene052122	MS.gene52600	PPI
MS.gene071169	MS.gene52600	PPI
MS.gene071613	MS.gene52600	PPI
MS.gene072646	MS.gene52600	PPI
MS.gene22773	MS.gene52600	PPI
MS.gene30955	MS.gene52600	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52600.t1	MTR_7g080430	98.093	472	3	2	3	468	4	475	0.0	945
MS.gene52600.t1	MTR_1g041890	38.530	449	240	11	30	457	114	547	1.15e-84	270
MS.gene52600.t1	MTR_7g112100	40.625	352	205	2	104	454	116	464	1.86e-79	255
MS.gene52600.t1	MTR_7g110570	31.445	353	221	8	116	454	49	394	3.66e-40	150
MS.gene52600.t1	MTR_7g110570	31.092	357	211	8	116	454	49	388	7.69e-40	148
MS.gene52600.t1	MTR_7g108300	34.717	265	168	4	189	452	134	394	2.18e-38	144

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52600.t1	AT5G36170	77.037	405	89	1	64	468	56	456	0.0	655
MS.gene52600.t1	AT5G36170	77.228	404	88	1	65	468	56	455	0.0	655
MS.gene52600.t1	AT5G36170	75.410	305	71	1	64	368	56	356	1.04e-167	478
MS.gene52600.t1	AT5G36170	75.658	304	70	1	65	368	56	355	2.02e-167	477
MS.gene52600.t1	AT1G56350	37.500	384	225	3	71	454	103	471	7.54e-78	251
MS.gene52600.t1	AT3G57190	35.405	370	224	6	93	460	47	403	2.63e-68	224
MS.gene52600.t1	AT3G62910	31.629	313	209	4	141	452	89	397	5.15e-42	154
MS.gene52600.t1	AT2G47020	30.769	312	206	6	149	454	26	333	3.66e-33	129
MS.gene52600.t1	AT2G47020	30.769	312	206	6	149	454	91	398	7.61e-33	129
MS.gene52600.t1	AT2G47020	28.698	338	205	6	149	454	91	424	1.65e-29	120

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Find 118 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGATTAGAGAATCATC+TGG	0.520355	7.4:+25847929	MS.gene52600:CDS
AAAGATTCTTCTGGAAGAAG+AGG	0.527140	7.4:-25849634	None:intergenic
AAATCTCTTGGAGAAGAAGC+TGG	0.467752	7.4:+25849360	MS.gene52600:CDS
AAATGGAATCCGTTGATAAA+GGG	0.463579	7.4:+25848554	MS.gene52600:CDS
AACAATAGTTATGCTGACAG+AGG	0.660154	7.4:+25848531	MS.gene52600:CDS
AACTGAATAAGTCAATTGAT+CGG	0.574053	7.4:+25848608	MS.gene52600:CDS
AAGACCTTTGGAATTAAAAG+GGG	0.580978	7.4:-25849472	None:intergenic
AAGAGATTTCTCAACCACTC+TGG	0.542572	7.4:-25849346	None:intergenic
AAGCATCTTGTAGCTCCTTT+TGG	0.269602	7.4:+25847993	MS.gene52600:CDS
AAGGAACACATCGCATTGTT+CGG	0.481188	7.4:+25849445	MS.gene52600:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGATTAGAGAATCATC+TGG	+	chr7.4:25847929-25847948	MS.gene52600:CDS	30.0%
ACCTACATTCATTGTAATGA+AGG	-	chr7.4:25848499-25848518	None:intergenic	30.0%
ACTGAATTTAAACAGATTCG+AGG	+	chr7.4:25850169-25850188	MS.gene52600:CDS	30.0%
ATACTGCATCATAATGTATC+GGG	+	chr7.4:25847781-25847800	MS.gene52600:intron	30.0%
ATAGTCGCTAAAATCAATTC+CGG	+	chr7.4:25847819-25847838	MS.gene52600:intron	30.0%
ATCATCTGGTCTACAATTAT+TGG	+	chr7.4:25847943-25847962	MS.gene52600:CDS	30.0%
ATTACAATGAATGTAGGTTG+AGG	+	chr7.4:25848501-25848520	MS.gene52600:intron	30.0%
CTGAATTTAAACAGATTCGA+GGG	+	chr7.4:25850170-25850189	MS.gene52600:CDS	30.0%
CTGTCATAAGCATTTAAATC+TGG	+	chr7.4:25848997-25849016	MS.gene52600:intron	30.0%
GAAGAATAAAAACAGAGCAA+AGG	-	chr7.4:25849809-25849828	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	25846500	25850387	25846500	ID=MS.gene52600
chr7.4	mRNA	25846500	25850387	25846500	ID=MS.gene52600.t1;Parent=MS.gene52600
chr7.4	exon	25846500	25846686	25846500	ID=MS.gene52600.t1.exon1;Parent=MS.gene52600.t1
chr7.4	CDS	25846500	25846686	25846500	ID=cds.MS.gene52600.t1;Parent=MS.gene52600.t1
chr7.4	exon	25846783	25846869	25846783	ID=MS.gene52600.t1.exon2;Parent=MS.gene52600.t1
chr7.4	CDS	25846783	25846869	25846783	ID=cds.MS.gene52600.t1;Parent=MS.gene52600.t1
chr7.4	exon	25847882	25848102	25847882	ID=MS.gene52600.t1.exon3;Parent=MS.gene52600.t1
chr7.4	CDS	25847882	25848102	25847882	ID=cds.MS.gene52600.t1;Parent=MS.gene52600.t1
chr7.4	exon	25848517	25848720	25848517	ID=MS.gene52600.t1.exon4;Parent=MS.gene52600.t1
chr7.4	CDS	25848517	25848720	25848517	ID=cds.MS.gene52600.t1;Parent=MS.gene52600.t1
chr7.4	exon	25849285	25849500	25849285	ID=MS.gene52600.t1.exon5;Parent=MS.gene52600.t1
chr7.4	CDS	25849285	25849500	25849285	ID=cds.MS.gene52600.t1;Parent=MS.gene52600.t1
chr7.4	exon	25849607	25849793	25849607	ID=MS.gene52600.t1.exon6;Parent=MS.gene52600.t1
chr7.4	CDS	25849607	25849793	25849607	ID=cds.MS.gene52600.t1;Parent=MS.gene52600.t1
chr7.4	exon	25850083	25850387	25850083	ID=MS.gene52600.t1.exon7;Parent=MS.gene52600.t1
chr7.4	CDS	25850083	25850387	25850083	ID=cds.MS.gene52600.t1;Parent=MS.gene52600.t1

Gene Sequence

>MS.gene52600

ATGGAGGTTGTTTCACACCCTCTGTGCTGCTACTACACCACTGTAACCGCCAAAACCTTTAGGTCTTATAAACAACCATTTCTCATTCCACAATTTCCCTCTTCTTCTTCTTCACCACATTTTTCTTTCTTATCTTTCCGCACCACCACTCTCTCTCATCGTCCTTCTCCTTTTCCTCTATCACCTGGTACTGTTTCGATTCTATTTATTTTCAATTCTCATGTTTACTACTTCATTTATTTCATAATGTTTTTTTTTTTTTTTGTGTTAATGGCTTTCACAGTAGTTCTGTTTGCGACGCCGGAGAATCAATTGAGCAGCGTTGGGGAAGGGGAGGAGGATACACACACAAGCGATTCCGCACTTCAAGGTAACTGCTTGCTTACTTAATGTTATATTCCTACTTTATTTGAGATCTTTTTCTATAATTCAGACAAAATTGTGTCACATTTTCATTCATACACCAATCATAGCCGGTGATGTTATGATATTAGTATTTAGAATAAAGTTAAAATGTGTGTAACTCCAGAATGTGAACGAATCAATATTGTTCCACAATACACTGTTCAGTACAAAATTTTAAAATAGCAGCTATAGTAGCGCTATAGCACTCTTGTATAGCAGATTTTGAACAAGACAGTGTGTTTTTACCACGATCGACAGAACCGTCCTCAGTGCAAGTGCACGTGCACGTAAAACCCTTGTAGGGAGTCTAATGTGCATAATTTAAAGCGGCCCTTGATTTTCAGCTTTAAAATAAGTCGTCATGACTGGAATATGCACTCATCAGTTACCAAATGTTTTATTGTATCAATTTTTTTTTTTCAACTATGGGGAAGCACTTAAGGGTGTGTTTGGATTGAGTTTAGGAGGGGAATGGAAGGGAGGACTAACTTTTCTTTTTTAAATCACGGATGATATAAAATGTTTTTTTAAAATAAATAAAGTGTGATTGAAGTATTATATGTTATTATTTCATTTTTTTATAAAACATTTTCTAGTGTCCGTAATTTAAAAAAAAAGTAAGCACTCCCTTCCCTTTGCCTCCTAAATCCTCCATCCAAACACACCCTTAAGGAATGATATAGACCACAACACCGAGAGACTATAGGGCAGTATCTTATTAACATTTTGTTGTTTGTAATTTTTTTCTATTCCAAATGATTGCAATTTATTTTCTAATTGAATAAGTAGATTTGCACATTGGTGTTATCATGAGGACTTCTTTAGATTTAAGTCATTCGGTACTTTCCTGTTTCTCTCTCCCTTTTGTATAAGCATATACTGCATCATAATGTATCGGGTGAATCAATTAGAGGATAGTCGCTAAAATCAATTCCGGATTGGTTTGTTTTGAAGTATCACTTGGCATTGTGTTGCAGATTTTTATTCGCTGAGGAAGGATGTTGAAATTGCATCACAGCGTGTCAAAGAGATTAGAGAATCATCTGGTCTACAATTATTGGAGCAAGAACTTGCCAAGTTGGAAGAGGAAGCATCTTGTAGCTCCTTTTGGGACGACCGAGCCAAAGCTCAACAGACTCTTTCGACATTGGCTGATGTCAAAGAAAAGATAAAATTGCTCAATGACTACAAAACTCAGGTTAGATATAATTCTGAATATTTTAGGAGCAATTACATGAAGACCGACATGCAGTAATATCTATACTAATAAATAAATTGGATTTCAAGTTTCATTGCTAACTTTTAAATGCCTTAAGAACTGGCCGTAAAGATTTAGAAACAAAAATTAATGAAGGTAATTTTGTAAAATTGACACAAAAGTTATTTATCTCCTGCTAATTAAGTGCAAGAAAGATAAAAAAAAATGATAAAAGCCAAATAAAAATAGCCACCCGCAGACTTATAAACATGGCTATCAATGTTCACGATGCTTCCACGGTGTACAACAAATCTATCTCTCTTTTAAGGACTCGTGTTGTGTTGAGTGTCTCTACTTCTTCACTTATACCAATCTAATCATGTGCCACTATGGCCTTCATTACAATGAATGTAGGTTGAGGATGCAGAAACAATAGTTATGCTGACAGAGGAAATGGAATCCGTTGATAAAGGGCTTTATGAAGAAGCTTCTAGTCTAATTAAAGAACTGAATAAGTCAATTGATCGGTTTGAGCTGACTCAACTTCTTTCTGGTCCTTACGACAAAGAAGGTGCTGTTATCTCTATTACAGCAGGTGCGGGAGGTACTGATGCACAGGTAAATAGCTATCCATGTACAGGTGTTACCATAATGAACTTGTTTTTTCATTCCTATCCCTAGAGGTAAAAAATTTATTGTCTGATATATTATACGGGTAGAACGGAGGAACTTGTAAGTTGTATGCCAGGAAAAACTAGAATTTATCTTCTTTTTTTCATCCTGAGTAAAAATTCACGCAGCTATATGTCACCTCTCTGTCTCAAGTCTCAACATTTTTAAACTTCTCCAGGCTTTCTGAAATTTGTTCATAGCCACATGTGTACTGGCAAGTAACTGTCATAAGCATTTAAATCTGGATGAGTGCACTTGTAGTATGTGGGAATGAGTTTTTTAAGCATTTAATATTCTGCCATTTCTAAAAAATAGTCATGTTGGAACCTTGCTATGTTGTTTTTTTTTTTTTCTTCTCAGATAATAATATAGAGAGCCCGCACTGTGTAGTCTGAGAAGTTGCAACTTATCAATCTTTCGAGTTATTTTTTCTATTTGCGTTTTTCTTGGAATATGAGTACTTTGTGGTGATGCTGAGTATTCAATTTCAACTTACTATTTCCAGTGCAGGACTGGGCGGACATGCTTCTTAGGATGTATGTGAGATGGGGTGAGAAACAGAGATACAAAACCAGAGTGGTTGAGAAATCTCTTGGAGAAGAAGCTGGAATTAAATCTGCCACCATCGAAGTTGAAGGCCGTTATGCGTATGGGTATTTGTCTGGGGAGAAAGGAACACATCGCATTGTTCGGCAATCCCCTTTTAATTCCAAAGGTCTTCGTCAGGTAATAACTTACTTTTTTGGTTGGCTGAATGTGCTTAGTCATCTGCCTTTCATTATCAAATGCACAGATTTTTCTTTTAAACTCCCATGTTGTATTATTTGAACAGACAAGCTTTTCTGGTGTTGAAGTCATGCCTCTTCTTCCAGAAGAATCTTTGAATGTTGAAATTCCAGAAGAGGACTTGGAGATTAGCTTCTCAAGAGCGGGTGGAAAAGGAGGTCAGAATGTTAACAAGGTTGAAACTGCCGTTCGAATTACACATATCCCAACTGGTGTCACTCTTCGCTGCACAGGTTCTTCTTTCTCCTTTGCTCTGTTTTTATTCTTCTGAAAGGGAGGCTTCACTCGGTTATTGACTCTCTATGTAGCCTTATCAACTCAATTTGAAATGTGATTTAATAACCTTCTCTACAGGTTTCTGTTATTTCGTCACATATATTATTTTCTGCTGTTGCTTCTGTTTAATTTCACTTTTGTGAAAAAATTTGAGAGCCACTTCTTTTGTGTTAGTATGGATCTAATTCGGTTATCTATACTTTTAATTATAAGTTTTAACTCCAAACTGCAATTGTGCTTGTGCAGAGGAGAGATCTCAGCTAGCAAATAAGATAAAAGCTTTAAGTCGTTTGAAAGCGAAGCTGTTGGTGATAGCTGAAGAGCAACGTGCAACTGAATTTAAACAGATTCGAGGGGACGTAGTGAAGGCTGAATGGGGACAGCAAATAAGAAATTATGTCTTCCATCCATACAAACTAGTAAAGGATGTAAGAACAGGGCAAGAAACACCAGATATCACCTCTGTTATGGATGGAGAATTGGATCCCTTCATCAAATCTTACCTCAAACACAAGTATAGTATGACAATGTCTACAAGTGGGGTTAACTAA

Protein sequence

>MS.gene52600.t1

MEVVSHPLCCYYTTVTAKTFRSYKQPFLIPQFPSSSSSPHFSFLSFRTTTLSHRPSPFPLSPVVLFATPENQLSSVGEGEEDTHTSDSALQDFYSLRKDVEIASQRVKEIRESSGLQLLEQELAKLEEEASCSSFWDDRAKAQQTLSTLADVKEKIKLLNDYKTQVEDAETIVMLTEEMESVDKGLYEEASSLIKELNKSIDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKSATIEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEESLNVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCTEERSQLANKIKALSRLKAKLLVIAEEQRATEFKQIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTGQETPDITSVMDGELDPFIKSYLKHKYSMTMSTSGVN