Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26193.t1 | XP_003616147.1 | 99.1 | 434 | 4 | 0 | 1 | 434 | 1 | 434 | 1.50E-243 | 851.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26193.t1 | P49293 | 73.1 | 431 | 104 | 7 | 1 | 428 | 1 | 422 | 9.3e-173 | 607.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26193.t1 | G7KFR8 | 99.1 | 434 | 4 | 0 | 1 | 434 | 1 | 434 | 1.1e-243 | 851.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene26193 | 0.91156 | 5.30E-83 | -1.69E-46 |
| MS.gene049369 | MS.gene26193 | 0.890556 | 8.86E-74 | -1.69E-46 |
| MS.gene049396 | MS.gene26193 | 0.832356 | 9.91E-56 | -1.69E-46 |
| MS.gene049758 | MS.gene26193 | 0.803194 | 3.92E-49 | -1.69E-46 |
| MS.gene049907 | MS.gene26193 | 0.823223 | 1.56E-53 | -1.69E-46 |
| MS.gene050128 | MS.gene26193 | 0.8769 | 9.66E-69 | -1.69E-46 |
| MS.gene050215 | MS.gene26193 | 0.804217 | 2.40E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene26193 | 0.826351 | 2.85E-54 | -1.69E-46 |
| MS.gene050432 | MS.gene26193 | 0.812915 | 3.33E-51 | -1.69E-46 |
| MS.gene050520 | MS.gene26193 | 0.838582 | 2.64E-57 | -1.69E-46 |
| MS.gene050670 | MS.gene26193 | 0.837913 | 3.93E-57 | -1.69E-46 |
| MS.gene050686 | MS.gene26193 | 0.805601 | 1.23E-49 | -1.69E-46 |
| MS.gene050971 | MS.gene26193 | 0.812203 | 4.77E-51 | -1.69E-46 |
| MS.gene05105 | MS.gene26193 | 0.846371 | 2.27E-59 | -1.69E-46 |
| MS.gene051255 | MS.gene26193 | 0.817094 | 3.94E-52 | -1.69E-46 |
| MS.gene051360 | MS.gene26193 | 0.842021 | 3.33E-58 | -1.69E-46 |
| MS.gene051387 | MS.gene26193 | 0.802749 | 4.84E-49 | -1.69E-46 |
| MS.gene052178 | MS.gene26193 | 0.813539 | 2.43E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene26193 | 0.874586 | 6.02E-68 | -1.69E-46 |
| MS.gene052310 | MS.gene26193 | 0.821511 | 3.88E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene26193 | 0.841537 | 4.47E-58 | -1.69E-46 |
| MS.gene052421 | MS.gene26193 | 0.813021 | 3.16E-51 | -1.69E-46 |
| MS.gene052485 | MS.gene26193 | 0.838874 | 2.22E-57 | -1.69E-46 |
| MS.gene053103 | MS.gene26193 | 0.809095 | 2.24E-50 | -1.69E-46 |
| MS.gene053104 | MS.gene26193 | 0.803145 | 4.01E-49 | -1.69E-46 |
| MS.gene053169 | MS.gene26193 | 0.812942 | 3.29E-51 | -1.69E-46 |
| MS.gene05316 | MS.gene26193 | 0.889061 | 3.39E-73 | -1.69E-46 |
| MS.gene053209 | MS.gene26193 | 0.837253 | 5.80E-57 | -1.69E-46 |
| MS.gene053449 | MS.gene26193 | 0.865958 | 4.05E-65 | -1.69E-46 |
| MS.gene053557 | MS.gene26193 | 0.81795 | 2.53E-52 | -1.69E-46 |
| MS.gene053758 | MS.gene26193 | 0.818785 | 1.63E-52 | -1.69E-46 |
| MS.gene053813 | MS.gene26193 | 0.863902 | 1.79E-64 | -1.69E-46 |
| MS.gene053912 | MS.gene26193 | 0.828191 | 1.03E-54 | -1.69E-46 |
| MS.gene053928 | MS.gene26193 | 0.82148 | 3.95E-53 | -1.69E-46 |
| MS.gene054010 | MS.gene26193 | 0.824718 | 6.93E-54 | -1.69E-46 |
| MS.gene054011 | MS.gene26193 | 0.800668 | 1.29E-48 | -1.69E-46 |
| MS.gene054012 | MS.gene26193 | 0.808761 | 2.64E-50 | -1.69E-46 |
| MS.gene054013 | MS.gene26193 | 0.811773 | 5.92E-51 | -1.69E-46 |
| MS.gene054123 | MS.gene26193 | 0.822404 | 2.41E-53 | -1.69E-46 |
| MS.gene054349 | MS.gene26193 | 0.805942 | 1.05E-49 | -1.69E-46 |
| MS.gene054556 | MS.gene26193 | 0.817469 | 3.24E-52 | -1.69E-46 |
| MS.gene05505 | MS.gene26193 | 0.820546 | 6.48E-53 | -1.69E-46 |
| MS.gene055116 | MS.gene26193 | 0.83806 | 3.60E-57 | -1.69E-46 |
| MS.gene055277 | MS.gene26193 | 0.827478 | 1.53E-54 | -1.69E-46 |
| MS.gene055412 | MS.gene26193 | 0.801913 | 7.20E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene26193 | 0.800433 | 1.44E-48 | -1.69E-46 |
| MS.gene055604 | MS.gene26193 | 0.812911 | 3.34E-51 | -1.69E-46 |
| MS.gene055666 | MS.gene26193 | 0.823783 | 1.15E-53 | -1.69E-46 |
| MS.gene055909 | MS.gene26193 | 0.823329 | 1.47E-53 | -1.69E-46 |
| MS.gene055911 | MS.gene26193 | 0.82943 | 5.17E-55 | -1.69E-46 |
| MS.gene05592 | MS.gene26193 | 0.831234 | 1.87E-55 | -1.69E-46 |
| MS.gene056191 | MS.gene26193 | 0.811402 | 7.13E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene26193 | 0.824851 | 6.45E-54 | -1.69E-46 |
| MS.gene056410 | MS.gene26193 | 0.816593 | 5.10E-52 | -1.69E-46 |
| MS.gene056422 | MS.gene26193 | 0.893667 | 5.08E-75 | -1.69E-46 |
| MS.gene056511 | MS.gene26193 | 0.845201 | 4.71E-59 | -1.69E-46 |
| MS.gene056609 | MS.gene26193 | 0.825684 | 4.10E-54 | -1.69E-46 |
| MS.gene056659 | MS.gene26193 | 0.80383 | 2.89E-49 | -1.69E-46 |
| MS.gene056902 | MS.gene26193 | 0.829173 | 5.97E-55 | -1.69E-46 |
| MS.gene057124 | MS.gene26193 | 0.834539 | 2.83E-56 | -1.69E-46 |
| MS.gene05735 | MS.gene26193 | 0.824734 | 6.87E-54 | -1.69E-46 |
| MS.gene057396 | MS.gene26193 | 0.813181 | 2.91E-51 | -1.69E-46 |
| MS.gene057448 | MS.gene26193 | 0.866257 | 3.25E-65 | -1.69E-46 |
| MS.gene057449 | MS.gene26193 | 0.861066 | 1.33E-63 | -1.69E-46 |
| MS.gene057450 | MS.gene26193 | 0.868109 | 8.34E-66 | -1.69E-46 |
| MS.gene057537 | MS.gene26193 | 0.89526 | 1.13E-75 | -1.69E-46 |
| MS.gene057734 | MS.gene26193 | 0.800487 | 1.41E-48 | -1.69E-46 |
| MS.gene057749 | MS.gene26193 | 0.808804 | 2.59E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene26193 | 0.82141 | 4.10E-53 | -1.69E-46 |
| MS.gene057927 | MS.gene26193 | 0.840532 | 8.22E-58 | -1.69E-46 |
| MS.gene058007 | MS.gene26193 | 0.817438 | 3.30E-52 | -1.69E-46 |
| MS.gene058075 | MS.gene26193 | 0.840762 | 7.15E-58 | -1.69E-46 |
| MS.gene058082 | MS.gene26193 | 0.800537 | 1.38E-48 | -1.69E-46 |
| MS.gene05811 | MS.gene26193 | 0.810633 | 1.05E-50 | -1.69E-46 |
| MS.gene058120 | MS.gene26193 | 0.812029 | 5.21E-51 | -1.69E-46 |
| MS.gene058293 | MS.gene26193 | 0.837293 | 5.66E-57 | -1.69E-46 |
| MS.gene058365 | MS.gene26193 | 0.82575 | 3.95E-54 | -1.69E-46 |
| MS.gene058459 | MS.gene26193 | 0.852281 | 5.12E-61 | -1.69E-46 |
| MS.gene058660 | MS.gene26193 | 0.813372 | 2.65E-51 | -1.69E-46 |
| MS.gene058700 | MS.gene26193 | 0.803758 | 2.99E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene26193 | 0.867753 | 1.08E-65 | -1.69E-46 |
| MS.gene058948 | MS.gene26193 | 0.830739 | 2.48E-55 | -1.69E-46 |
| MS.gene058949 | MS.gene26193 | 0.818907 | 1.53E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene26193 | 0.820195 | 7.80E-53 | -1.69E-46 |
| MS.gene059294 | MS.gene26193 | 0.840543 | 8.16E-58 | -1.69E-46 |
| MS.gene059366 | MS.gene26193 | 0.901039 | 4.01E-78 | -1.69E-46 |
| MS.gene059368 | MS.gene26193 | 0.843414 | 1.42E-58 | -1.69E-46 |
| MS.gene059420 | MS.gene26193 | 0.815734 | 7.94E-52 | -1.69E-46 |
| MS.gene059597 | MS.gene26193 | 0.815019 | 1.15E-51 | -1.69E-46 |
| MS.gene05959 | MS.gene26193 | 0.808482 | 3.03E-50 | -1.69E-46 |
| MS.gene059674 | MS.gene26193 | 0.861043 | 1.35E-63 | -1.69E-46 |
| MS.gene059676 | MS.gene26193 | 0.863266 | 2.81E-64 | -1.69E-46 |
| MS.gene059688 | MS.gene26193 | 0.858424 | 8.32E-63 | -1.69E-46 |
| MS.gene059692 | MS.gene26193 | 0.859034 | 5.47E-63 | -1.69E-46 |
| MS.gene059695 | MS.gene26193 | 0.860153 | 2.52E-63 | -1.69E-46 |
| MS.gene059708 | MS.gene26193 | 0.80424 | 2.38E-49 | -1.69E-46 |
| MS.gene059711 | MS.gene26193 | 0.891824 | 2.79E-74 | -1.69E-46 |
| MS.gene059807 | MS.gene26193 | 0.907579 | 4.35E-81 | -1.69E-46 |
| MS.gene05984 | MS.gene26193 | 0.806248 | 9.02E-50 | -1.69E-46 |
| MS.gene05986 | MS.gene26193 | 0.815541 | 8.77E-52 | -1.69E-46 |
| MS.gene059974 | MS.gene26193 | 0.857518 | 1.55E-62 | -1.69E-46 |
| MS.gene060005 | MS.gene26193 | 0.818552 | 1.85E-52 | -1.69E-46 |
| MS.gene060356 | MS.gene26193 | 0.808092 | 3.67E-50 | -1.69E-46 |
| MS.gene060372 | MS.gene26193 | 0.820249 | 7.58E-53 | -1.69E-46 |
| MS.gene06037 | MS.gene26193 | 0.807088 | 6.00E-50 | -1.69E-46 |
| MS.gene060495 | MS.gene26193 | 0.833567 | 4.95E-56 | -1.69E-46 |
| MS.gene060496 | MS.gene26193 | 0.824194 | 9.21E-54 | -1.69E-46 |
| MS.gene060569 | MS.gene26193 | 0.80153 | 8.62E-49 | -1.69E-46 |
| MS.gene060799 | MS.gene26193 | 0.805619 | 1.22E-49 | -1.69E-46 |
| MS.gene060800 | MS.gene26193 | 0.831322 | 1.78E-55 | -1.69E-46 |
| MS.gene060801 | MS.gene26193 | 0.808776 | 2.62E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene26193 | 0.815974 | 7.02E-52 | -1.69E-46 |
| MS.gene060818 | MS.gene26193 | 0.829588 | 4.73E-55 | -1.69E-46 |
| MS.gene060835 | MS.gene26193 | 0.803531 | 3.33E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene26193 | 0.88297 | 6.66E-71 | -1.69E-46 |
| MS.gene061041 | MS.gene26193 | 0.831179 | 1.93E-55 | -1.69E-46 |
| MS.gene061049 | MS.gene26193 | 0.820131 | 8.07E-53 | -1.69E-46 |
| MS.gene061051 | MS.gene26193 | -0.864748 | 9.72E-65 | -1.69E-46 |
| MS.gene061154 | MS.gene26193 | 0.837764 | 4.29E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26193.t1 | MTR_5g076620 | 99.078 | 434 | 4 | 0 | 1 | 434 | 1 | 434 | 0.0 | 887 |
| MS.gene26193.t1 | MTR_5g076620 | 98.945 | 379 | 4 | 0 | 1 | 379 | 1 | 379 | 0.0 | 775 |
| MS.gene26193.t1 | MTR_3g450510 | 73.950 | 357 | 84 | 2 | 77 | 429 | 37 | 388 | 0.0 | 544 |
| MS.gene26193.t1 | MTR_5g090780 | 73.988 | 346 | 81 | 3 | 87 | 429 | 42 | 381 | 0.0 | 531 |
| MS.gene26193.t1 | MTR_3g083630 | 56.443 | 388 | 145 | 6 | 48 | 433 | 15 | 380 | 1.83e-154 | 442 |
| MS.gene26193.t1 | MTR_3g083650 | 60.563 | 71 | 28 | 0 | 165 | 235 | 1 | 71 | 2.25e-26 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26193.t1 | AT5G17230 | 69.535 | 430 | 111 | 6 | 2 | 428 | 4 | 416 | 0.0 | 595 |
| MS.gene26193.t1 | AT5G17230 | 69.535 | 430 | 111 | 6 | 2 | 428 | 4 | 416 | 0.0 | 595 |
| MS.gene26193.t1 | AT5G17230 | 69.535 | 430 | 111 | 6 | 2 | 428 | 4 | 416 | 0.0 | 595 |
| MS.gene26193.t1 | AT5G17230 | 67.191 | 445 | 111 | 7 | 2 | 428 | 4 | 431 | 0.0 | 585 |
Find 90 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTATTTCGTCCAATATT+TGG | 0.167703 | 5.4:-57811588 | None:intergenic |
| CCTTCTATCATATCTTTAAA+TGG | 0.198005 | 5.4:-57810233 | None:intergenic |
| TCATGTCTGTGACATTATTA+AGG | 0.208507 | 5.4:+57808570 | None:intergenic |
| TTCCCAGGCAAAACAATTTC+CGG | 0.216388 | 5.4:-57808956 | None:intergenic |
| CCGAAAGGCGAAGAGCTATT+TGG | 0.218249 | 5.4:+57809168 | MS.gene26193:CDS |
| AATGGTATACTCGATTCTTT+TGG | 0.239530 | 5.4:+57808629 | MS.gene26193:CDS |
| CAAATAGCTCTTCGCCTTTC+GGG | 0.241550 | 5.4:-57809167 | None:intergenic |
| TCATGAAGAGCCAAATTAAA+AGG | 0.246269 | 5.4:+57810780 | MS.gene26193:CDS |
| CCAAATAGCTCTTCGCCTTT+CGG | 0.257174 | 5.4:-57809168 | None:intergenic |
| GCTATTATATCGCCAAATAT+TGG | 0.289265 | 5.4:+57811576 | MS.gene26193:CDS |
| TGCTTCCTCTCCTAGCTTAG+AGG | 0.306439 | 5.4:+57808595 | MS.gene26193:CDS |
| TGGTAAAGAAAGTAACTTCT+TGG | 0.327130 | 5.4:-57811656 | None:intergenic |
| CGAAAGGCGAAGAGCTATTT+GGG | 0.347088 | 5.4:+57809169 | MS.gene26193:CDS |
| GGTTCTAAAGCAGGCGTCTT+TGG | 0.359004 | 5.4:+57808892 | MS.gene26193:CDS |
| CTCTACTGTTACTATGTTGC+TGG | 0.359851 | 5.4:+57810308 | MS.gene26193:CDS |
| CCACTTGTCTGTCACCTTAC+CGG | 0.360789 | 5.4:-57810750 | None:intergenic |
| GCTGTAATATGTGAAGCATT+AGG | 0.366470 | 5.4:-57809712 | None:intergenic |
| CATGTCTGTGACATTATTAA+GGG | 0.371237 | 5.4:+57808571 | None:intergenic |
| TCAGATGACGACATATTTGC+CGG | 0.386677 | 5.4:+57810731 | MS.gene26193:CDS |
| ACTTGCATATGCTAGATCTA+TGG | 0.394076 | 5.4:+57811678 | MS.gene26193:CDS |
| CTGTAATATGTGAAGCATTA+GGG | 0.396810 | 5.4:-57809711 | None:intergenic |
| TGTTGGTTTAATGAGTGTTC+CGG | 0.406495 | 5.4:+57810334 | MS.gene26193:CDS |
| GTATCTACCACAAGATGAAT+TGG | 0.407019 | 5.4:+57810694 | MS.gene26193:CDS |
| AGAGCTATTTGGGCAATATA+TGG | 0.408215 | 5.4:+57809179 | MS.gene26193:CDS |
| AGCAGGCGTCTTTGGTTAAG+AGG | 0.410114 | 5.4:+57808900 | MS.gene26193:CDS |
| CAGATTTCCTGTTGATATCC+AGG | 0.418869 | 5.4:+57809828 | MS.gene26193:CDS |
| ATCAATACCTGGATATCAAC+AGG | 0.418894 | 5.4:-57809835 | None:intergenic |
| CAAGATGAATTGGCTCTGGC+AGG | 0.432002 | 5.4:+57810704 | MS.gene26193:CDS |
| ATTACAACAATTTCACTAAG+AGG | 0.435955 | 5.4:+57811617 | MS.gene26193:CDS |
| TTTAATGAGTGTTCCGGTCA+TGG | 0.437974 | 5.4:+57810340 | MS.gene26193:CDS |
| ATCGAGTATACCATTGGAAC+AGG | 0.442296 | 5.4:-57808621 | None:intergenic |
| CCATTTAAAGATATGATAGA+AGG | 0.449064 | 5.4:+57810233 | MS.gene26193:CDS |
| CGGTGAACTTGAAGTGAAAC+CGG | 0.459098 | 5.4:+57808937 | MS.gene26193:CDS |
| TACTATGTTGCTGGAACTGT+TGG | 0.460078 | 5.4:+57810317 | MS.gene26193:CDS |
| TACAATGCTGCCTTGGCCTT+AGG | 0.462846 | 5.4:+57810401 | MS.gene26193:CDS |
| TATGATAGAAGGAATGAGAA+TGG | 0.470612 | 5.4:+57810244 | MS.gene26193:CDS |
| GGATAGGTGGGAATCAAGAT+TGG | 0.482924 | 5.4:+57809744 | MS.gene26193:CDS |
| GCAGCATCAAGCATATCAAA+TGG | 0.485476 | 5.4:-57809787 | None:intergenic |
| TATGCATGTGTTGGTCAGCC+TGG | 0.487165 | 5.4:+57808770 | MS.gene26193:CDS |
| TTCAGTGTGGTGTAGGAGGA+CGG | 0.496266 | 5.4:+57809672 | MS.gene26193:intron |
| AAGAGGAAGCTGAGCTCTAC+CGG | 0.500218 | 5.4:+57808917 | MS.gene26193:CDS |
| GGCTGTTTCATCTGAGCAGA+AGG | 0.500886 | 5.4:+57808859 | MS.gene26193:CDS |
| TGCGTTGAAATGCCCATGAC+CGG | 0.505460 | 5.4:-57810353 | None:intergenic |
| TTATGATGTGGTTCTAAAGC+AGG | 0.507164 | 5.4:+57808883 | MS.gene26193:CDS |
| TAGCTGATTTGCAATTCCTA+AGG | 0.507538 | 5.4:-57810417 | None:intergenic |
| TTAATGAGTGTTCCGGTCAT+GGG | 0.510615 | 5.4:+57810341 | MS.gene26193:CDS |
| GCATATCAAATGGACGCCCT+TGG | 0.512063 | 5.4:-57809777 | None:intergenic |
| AAAAGAATCGAGTATACCAT+TGG | 0.514657 | 5.4:-57808627 | None:intergenic |
| AGGACGGATGAACTTGTTGA+TGG | 0.515418 | 5.4:+57809688 | MS.gene26193:CDS |
| ACCACAAGATGAATTGGCTC+TGG | 0.516944 | 5.4:+57810700 | MS.gene26193:CDS |
| CATGAAGAGCCAAATTAAAA+GGG | 0.517837 | 5.4:+57810781 | MS.gene26193:CDS |
| CGGTTTCACTTCAAGTTCAC+CGG | 0.518111 | 5.4:-57808936 | None:intergenic |
| CAGCCACTTCGCCTGCAGTC+GGG | 0.523811 | 5.4:-57808841 | None:intergenic |
| ACAGCCACTTCGCCTGCAGT+CGG | 0.526809 | 5.4:-57808842 | None:intergenic |
| TGACGACATATTTGCCGGTA+AGG | 0.527146 | 5.4:+57810736 | MS.gene26193:CDS |
| TTACAACAATTTCACTAAGA+GGG | 0.529341 | 5.4:+57811618 | MS.gene26193:CDS |
| ACCAACATACTCAGAGATGT+TGG | 0.536889 | 5.4:+57810440 | MS.gene26193:CDS |
| CAGCAACTGCAATGGATAGG+TGG | 0.537534 | 5.4:+57809731 | MS.gene26193:CDS |
| GTGCTCGCGAACCCGACTGC+AGG | 0.538718 | 5.4:+57808830 | MS.gene26193:CDS |
| TTGCTAGCACTCTCTAAGCC+AGG | 0.549483 | 5.4:-57808788 | None:intergenic |
| CTCAACAAACTCAAATTCCC+AGG | 0.554708 | 5.4:-57808971 | None:intergenic |
| AGCAACTGCAATGGATAGGT+GGG | 0.555214 | 5.4:+57809732 | MS.gene26193:CDS |
| TAGATACACTCTTCCTCGCC+TGG | 0.558995 | 5.4:-57810678 | None:intergenic |
| CGAGCACATTCGATAACAAA+GGG | 0.559386 | 5.4:-57808814 | None:intergenic |
| ATTTGCAATTCCTAAGGCCA+AGG | 0.562166 | 5.4:-57810411 | None:intergenic |
| TTAGAGGTCTCCTGTTCCAA+TGG | 0.570133 | 5.4:+57808611 | MS.gene26193:CDS |
| GAGTGTGTACAATGCTGCCT+TGG | 0.577004 | 5.4:+57810394 | MS.gene26193:CDS |
| CAATGAACAGAGCAGATGGC+CGG | 0.577565 | 5.4:+57810847 | MS.gene26193:CDS |
| GCCAGAGCCAATTCATCTTG+TGG | 0.580658 | 5.4:-57810701 | None:intergenic |
| ATCAACAGGAAATCTGTTGA+CGG | 0.581442 | 5.4:-57809821 | None:intergenic |
| TCCAACATCTCTGAGTATGT+TGG | 0.584691 | 5.4:-57810441 | None:intergenic |
| AGCTCAATGAACAGAGCAGA+TGG | 0.586885 | 5.4:+57810843 | MS.gene26193:CDS |
| TTACAGCAACTGCAATGGAT+AGG | 0.587244 | 5.4:+57809728 | MS.gene26193:CDS |
| ACATATTACAGCAACTGCAA+TGG | 0.587371 | 5.4:+57809723 | MS.gene26193:CDS |
| AAGATGAATTGGCTCTGGCA+GGG | 0.589323 | 5.4:+57810705 | MS.gene26193:CDS |
| GAACAGGAGACCTCTAAGCT+AGG | 0.592655 | 5.4:-57808605 | None:intergenic |
| TGAGCAGAAGGTTTATGATG+TGG | 0.597983 | 5.4:+57808871 | MS.gene26193:CDS |
| GATATTAAGTATGCATGTGT+TGG | 0.611130 | 5.4:+57808761 | MS.gene26193:CDS |
| TGAGGCAGAAAAGGGAGTGA+CGG | 0.617889 | 5.4:+57810820 | MS.gene26193:CDS |
| ATTGTACACACTCTCTGTTG+TGG | 0.620184 | 5.4:-57810384 | None:intergenic |
| CCGGTAAGGTGACAGACAAG+TGG | 0.621228 | 5.4:+57810750 | MS.gene26193:CDS |
| GCGAGCACATTCGATAACAA+AGG | 0.625781 | 5.4:-57808815 | None:intergenic |
| CTCTTCTAATGACTCCCGAA+AGG | 0.631131 | 5.4:+57809153 | MS.gene26193:CDS |
| TTTCCTAACAGTGCCAGGCG+AGG | 0.637716 | 5.4:+57810665 | MS.gene26193:intron |
| AGTGAAGCATATGATAGATG+TGG | 0.638875 | 5.4:+57808992 | MS.gene26193:CDS |
| GAACCCGACTGCAGGCGAAG+TGG | 0.652442 | 5.4:+57808838 | MS.gene26193:CDS |
| ATAGATCTAGCATATGCAAG+TGG | 0.656749 | 5.4:-57811676 | None:intergenic |
| GGAGACCTCTAAGCTAGGAG+AGG | 0.657505 | 5.4:-57808600 | None:intergenic |
| CATACTCAGAGATGTTGGAG+AGG | 0.697210 | 5.4:+57810445 | MS.gene26193:CDS |
| GTAAGGTGACAGACAAGTGG+AGG | 0.698008 | 5.4:+57810753 | MS.gene26193:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTATGTAAAAAAAACTT+AGG | - | chr5.4:57810556-57810575 | None:intergenic | 15.0% |
| !! | TAGATTAAGAAATATAATGT+TGG | + | chr5.4:57810570-57810589 | MS.gene26193:intron | 15.0% |
| !! | TTTCATGTATATATCTAATT+TGG | - | chr5.4:57809873-57809892 | None:intergenic | 15.0% |
| !!! | AAATTGATCTTTATTTATGT+AGG | - | chr5.4:57809576-57809595 | None:intergenic | 15.0% |
| !!! | GATTATGATAACAAATATTT+TGG | + | chr5.4:57809233-57809252 | MS.gene26193:intron | 15.0% |
| !!! | TTTAAAATAACTTACATACA+TGG | + | chr5.4:57809399-57809418 | MS.gene26193:intron | 15.0% |
| !! | AGTAATCATTAAATAACTTC+TGG | + | chr5.4:57811072-57811091 | MS.gene26193:intron | 20.0% |
| !! | GTAATCATTAAATAACTTCT+GGG | + | chr5.4:57811073-57811092 | MS.gene26193:intron | 20.0% |
| !! | TCAAACTCTTATTATTGAAT+TGG | + | chr5.4:57811497-57811516 | MS.gene26193:intron | 20.0% |
| !! | TTATATCTGAGGAAAAAAAA+TGG | + | chr5.4:57810077-57810096 | MS.gene26193:intron | 20.0% |
| !! | TTCTTATAGACAACAAAAAT+TGG | + | chr5.4:57809467-57809486 | MS.gene26193:intron | 20.0% |
| !! | TTTGTATATACATCTGATTA+GGG | - | chr5.4:57809599-57809618 | None:intergenic | 20.0% |
| !!! | ATATGCTAAAACATTTTACT+TGG | + | chr5.4:57809030-57809049 | MS.gene26193:CDS | 20.0% |
| !!! | TAAATTTGCTAAGTTTTCAA+GGG | + | chr5.4:57809292-57809311 | MS.gene26193:intron | 20.0% |
| !!! | TATGCTAAAACATTTTACTT+GGG | + | chr5.4:57809031-57809050 | MS.gene26193:CDS | 20.0% |
| ! | AAAATGAACTTAGTACATGA+CGG | - | chr5.4:57809533-57809552 | None:intergenic | 25.0% |
| ! | AGAATGATAAGAAAAAGACA+CGG | + | chr5.4:57808717-57808736 | MS.gene26193:CDS | 25.0% |
| ! | AGTGAGGATGTTAATTATTT+CGG | + | chr5.4:57809079-57809098 | MS.gene26193:intron | 25.0% |
| ! | ATCGACAAAAACAAAAGATT+AGG | - | chr5.4:57810209-57810228 | None:intergenic | 25.0% |
| ! | ATTACAACAATTTCACTAAG+AGG | + | chr5.4:57811617-57811636 | MS.gene26193:CDS | 25.0% |
| ! | ATTATACAAAACCTTCTTTG+TGG | + | chr5.4:57810891-57810910 | MS.gene26193:intron | 25.0% |
| ! | CCATTTAAAGATATGATAGA+AGG | + | chr5.4:57810233-57810252 | MS.gene26193:CDS | 25.0% |
| ! | CCTTCTATCATATCTTTAAA+TGG | - | chr5.4:57810236-57810255 | None:intergenic | 25.0% |
| ! | CTTTGTATATACATCTGATT+AGG | - | chr5.4:57809600-57809619 | None:intergenic | 25.0% |
| ! | GAACAAAATTAATCAATACC+TGG | - | chr5.4:57809849-57809868 | None:intergenic | 25.0% |
| ! | GAGTTGAGTCAATTTATATT+GGG | + | chr5.4:57809113-57809132 | MS.gene26193:intron | 25.0% |
| ! | GTAGAAAACAACATTAAAGA+TGG | - | chr5.4:57809897-57809916 | None:intergenic | 25.0% |
| ! | TAATTAACATCCTCACTTTA+AGG | - | chr5.4:57809076-57809095 | None:intergenic | 25.0% |
| ! | TATATGTAAGTGTGTATAGA+TGG | + | chr5.4:57810939-57810958 | MS.gene26193:intron | 25.0% |
| ! | TATTATCTTTCCTTAAAGTG+AGG | + | chr5.4:57809063-57809082 | MS.gene26193:intron | 25.0% |
| ! | TCCACAAAATCATTATATGT+GGG | - | chr5.4:57809986-57810005 | None:intergenic | 25.0% |
| ! | TTACAACAATTTCACTAAGA+GGG | + | chr5.4:57811618-57811637 | MS.gene26193:CDS | 25.0% |
| ! | TTCCACAAAATCATTATATG+TGG | - | chr5.4:57809987-57810006 | None:intergenic | 25.0% |
| !! | CCTCTAAACTTTAGAAAATA+GGG | + | chr5.4:57809632-57809651 | MS.gene26193:intron | 25.0% |
| !! | TCCTCTAAACTTTAGAAAAT+AGG | + | chr5.4:57809631-57809650 | MS.gene26193:intron | 25.0% |
| !! | TGAGTTGAGTCAATTTATAT+TGG | + | chr5.4:57809112-57809131 | MS.gene26193:intron | 25.0% |
| !! | TGTTAATTATTTCGGTTTTG+TGG | + | chr5.4:57809087-57809106 | MS.gene26193:intron | 25.0% |
| !! | TTTTTCTAATGACACATGTT+CGG | - | chr5.4:57810124-57810143 | None:intergenic | 25.0% |
| !!! | AATGTTGTTTTCTACTTGAA+AGG | + | chr5.4:57809902-57809921 | MS.gene26193:intron | 25.0% |
| !!! | ACATGAGATAACTTTTTTGA+TGG | - | chr5.4:57811709-57811728 | None:intergenic | 25.0% |
| !!! | AGGTTTTGTATAATGATGTT+TGG | - | chr5.4:57810885-57810904 | None:intergenic | 25.0% |
| !!! | GTAAATTTGCTAAGTTTTCA+AGG | + | chr5.4:57809291-57809310 | MS.gene26193:intron | 25.0% |
| AAAAGAATCGAGTATACCAT+TGG | - | chr5.4:57808630-57808649 | None:intergenic | 30.0% | |
| ACTTAGGACGAAAGTTATTA+TGG | - | chr5.4:57810540-57810559 | None:intergenic | 30.0% | |
| CATGAAGAGCCAAATTAAAA+GGG | + | chr5.4:57810781-57810800 | MS.gene26193:CDS | 30.0% | |
| CCACAAAATCATTATATGTG+GGG | - | chr5.4:57809985-57810004 | None:intergenic | 30.0% | |
| CTTCTATTTCGTCCAATATT+TGG | - | chr5.4:57811591-57811610 | None:intergenic | 30.0% | |
| GAAATGAAGTGAACAAACAT+CGG | - | chr5.4:57810487-57810506 | None:intergenic | 30.0% | |
| GATATTAAGTATGCATGTGT+TGG | + | chr5.4:57808761-57808780 | MS.gene26193:CDS | 30.0% | |
| GCTATTATATCGCCAAATAT+TGG | + | chr5.4:57811576-57811595 | MS.gene26193:CDS | 30.0% | |
| GGAAAATTGAGCATATGATA+AGG | - | chr5.4:57810650-57810669 | None:intergenic | 30.0% | |
| TATGATAGAAGGAATGAGAA+TGG | + | chr5.4:57810244-57810263 | MS.gene26193:CDS | 30.0% | |
| TCATGAAGAGCCAAATTAAA+AGG | + | chr5.4:57810780-57810799 | MS.gene26193:CDS | 30.0% | |
| TGCAAAGAACATTATATCTG+AGG | + | chr5.4:57810066-57810085 | MS.gene26193:intron | 30.0% | |
| TGGTAAAGAAAGTAACTTCT+TGG | - | chr5.4:57811659-57811678 | None:intergenic | 30.0% | |
| ! | AATGGTATACTCGATTCTTT+TGG | + | chr5.4:57808629-57808648 | MS.gene26193:CDS | 30.0% |
| ! | ATGGTATACTCGATTCTTTT+GGG | + | chr5.4:57808630-57808649 | MS.gene26193:CDS | 30.0% |
| ! | ATTGTTTAGTTTAGCAACAG+AGG | - | chr5.4:57810601-57810620 | None:intergenic | 30.0% |
| ! | CTGTAATATGTGAAGCATTA+GGG | - | chr5.4:57809714-57809733 | None:intergenic | 30.0% |
| ! | TTTTAGTATGTGACGCAAAA+GGG | + | chr5.4:57811522-57811541 | MS.gene26193:intron | 30.0% |
| !! | AATGACCTTGCATTTGATTT+TGG | + | chr5.4:57810618-57810637 | MS.gene26193:intron | 30.0% |
| !! | ATTTTAGTATGTGACGCAAA+AGG | + | chr5.4:57811521-57811540 | MS.gene26193:intron | 30.0% |
| !!! | ATATTGGGTTTTTTTCTCTC+AGG | + | chr5.4:57809128-57809147 | MS.gene26193:intron | 30.0% |
| !!! | CCCTATTTTCTAAAGTTTAG+AGG | - | chr5.4:57809635-57809654 | None:intergenic | 30.0% |
| !!! | TGAGATAACTTTTTTGATGG+AGG | - | chr5.4:57811706-57811725 | None:intergenic | 30.0% |
| !!! | TTTTTTGATGAGGCAGAAAA+GGG | + | chr5.4:57810812-57810831 | MS.gene26193:CDS | 30.0% |
| AACTTGTAGCCAATTCCATT+TGG | + | chr5.4:57809495-57809514 | MS.gene26193:intron | 35.0% | |
| ACATATTACAGCAACTGCAA+TGG | + | chr5.4:57809723-57809742 | MS.gene26193:CDS | 35.0% | |
| ACTTGCATATGCTAGATCTA+TGG | + | chr5.4:57811678-57811697 | MS.gene26193:CDS | 35.0% | |
| AGAGCTATTTGGGCAATATA+TGG | + | chr5.4:57809179-57809198 | MS.gene26193:CDS | 35.0% | |
| AGTGAAGCATATGATAGATG+TGG | + | chr5.4:57808992-57809011 | MS.gene26193:CDS | 35.0% | |
| ATAGATCTAGCATATGCAAG+TGG | - | chr5.4:57811679-57811698 | None:intergenic | 35.0% | |
| ATCAACAGGAAATCTGTTGA+CGG | - | chr5.4:57809824-57809843 | None:intergenic | 35.0% | |
| ATCAATACCTGGATATCAAC+AGG | - | chr5.4:57809838-57809857 | None:intergenic | 35.0% | |
| ATCTGAGGAAAAAAAATGGC+AGG | + | chr5.4:57810081-57810100 | MS.gene26193:intron | 35.0% | |
| ATGTGTTATGCTCTTATGTG+TGG | + | chr5.4:57811337-57811356 | MS.gene26193:intron | 35.0% | |
| CAATATATGGTGAGTGATCA+TGG | + | chr5.4:57809192-57809211 | MS.gene26193:intron | 35.0% | |
| CTCCTCTACTTGTGAAAAAT+TGG | + | chr5.4:57811363-57811382 | MS.gene26193:intron | 35.0% | |
| CTCTACTTGTGAAAAATTGG+TGG | + | chr5.4:57811366-57811385 | MS.gene26193:intron | 35.0% | |
| CTGCGAAACAATGAAAACTT+CGG | - | chr5.4:57810917-57810936 | None:intergenic | 35.0% | |
| GATAAATCCTCTAACACTGA+AGG | - | chr5.4:57810187-57810206 | None:intergenic | 35.0% | |
| GTATCTACCACAAGATGAAT+TGG | + | chr5.4:57810694-57810713 | MS.gene26193:CDS | 35.0% | |
| TCATTATATGTGGGGACAAA+AGG | - | chr5.4:57809977-57809996 | None:intergenic | 35.0% | |
| TGAAGCCAAAATCAAATGCA+AGG | - | chr5.4:57810626-57810645 | None:intergenic | 35.0% | |
| TGTTTGACAAGTTCATCTAC+TGG | + | chr5.4:57809323-57809342 | MS.gene26193:intron | 35.0% | |
| TGTTTGGCTGAATTTCTTAC+CGG | - | chr5.4:57810869-57810888 | None:intergenic | 35.0% | |
| ! | CACCAATTTTTCACAAGTAG+AGG | - | chr5.4:57811368-57811387 | None:intergenic | 35.0% |
| ! | CCCCACATATAATGATTTTG+TGG | + | chr5.4:57809982-57810001 | MS.gene26193:intron | 35.0% |
| ! | CTTTTCTGCCTCATCAAAAA+AGG | - | chr5.4:57810813-57810832 | None:intergenic | 35.0% |
| ! | GCTGTAATATGTGAAGCATT+AGG | - | chr5.4:57809715-57809734 | None:intergenic | 35.0% |
| ! | TGGTATACTCGATTCTTTTG+GGG | + | chr5.4:57808631-57808650 | MS.gene26193:CDS | 35.0% |
| ! | TGTGAAAAATTGGTGGCTTA+AGG | + | chr5.4:57811373-57811392 | MS.gene26193:intron | 35.0% |
| !! | TAGCTGATTTGCAATTCCTA+AGG | - | chr5.4:57810420-57810439 | None:intergenic | 35.0% |
| !! | TGTTGGTTTAATGAGTGTTC+CGG | + | chr5.4:57810334-57810353 | MS.gene26193:CDS | 35.0% |
| !! | TTATGATGTGGTTCTAAAGC+AGG | + | chr5.4:57808883-57808902 | MS.gene26193:CDS | 35.0% |
| !!! | ATACTACTGCTTTTTCAGTG+TGG | + | chr5.4:57809659-57809678 | MS.gene26193:intron | 35.0% |
| !!! | CTTTTTTGATGAGGCAGAAA+AGG | + | chr5.4:57810811-57810830 | MS.gene26193:CDS | 35.0% |
| ACCAACATACTCAGAGATGT+TGG | + | chr5.4:57810440-57810459 | MS.gene26193:CDS | 40.0% | |
| AGTTTGAACTTGTAACCTCG+AGG | - | chr5.4:57811484-57811503 | None:intergenic | 40.0% | |
| ATCGAGTATACCATTGGAAC+AGG | - | chr5.4:57808624-57808643 | None:intergenic | 40.0% | |
| ATTGTACACACTCTCTGTTG+TGG | - | chr5.4:57810387-57810406 | None:intergenic | 40.0% | |
| ATTTGCAATTCCTAAGGCCA+AGG | - | chr5.4:57810414-57810433 | None:intergenic | 40.0% | |
| CAGATTTCCTGTTGATATCC+AGG | + | chr5.4:57809828-57809847 | MS.gene26193:CDS | 40.0% | |
| CGAGCACATTCGATAACAAA+GGG | - | chr5.4:57808817-57808836 | None:intergenic | 40.0% | |
| CTCAACAAACTCAAATTCCC+AGG | - | chr5.4:57808974-57808993 | None:intergenic | 40.0% | |
| CTCAAGTCAAAATGATTCGC+TGG | + | chr5.4:57811290-57811309 | MS.gene26193:intron | 40.0% | |
| CTCTACTGTTACTATGTTGC+TGG | + | chr5.4:57810308-57810327 | MS.gene26193:CDS | 40.0% | |
| GACGCATAACCAAATGGAAT+TGG | - | chr5.4:57809507-57809526 | None:intergenic | 40.0% | |
| GATTTGAATTTCATCCCTCG+AGG | + | chr5.4:57811466-57811485 | MS.gene26193:intron | 40.0% | |
| GCAGCATCAAGCATATCAAA+TGG | - | chr5.4:57809790-57809809 | None:intergenic | 40.0% | |
| GGTGAGTGATCATGGTTATA+TGG | + | chr5.4:57809200-57809219 | MS.gene26193:intron | 40.0% | |
| GTTTGAACTTGTAACCTCGA+GGG | - | chr5.4:57811483-57811502 | None:intergenic | 40.0% | |
| TACTATGTTGCTGGAACTGT+TGG | + | chr5.4:57810317-57810336 | MS.gene26193:CDS | 40.0% | |
| TACTGGACAGTTTCTGCTAT+AGG | + | chr5.4:57809340-57809359 | MS.gene26193:intron | 40.0% | |
| TCAGATGACGACATATTTGC+CGG | + | chr5.4:57810731-57810750 | MS.gene26193:CDS | 40.0% | |
| TCCAACATCTCTGAGTATGT+TGG | - | chr5.4:57810444-57810463 | None:intergenic | 40.0% | |
| TGAGCAGAAGGTTTATGATG+TGG | + | chr5.4:57808871-57808890 | MS.gene26193:CDS | 40.0% | |
| TTAATGAGTGTTCCGGTCAT+GGG | + | chr5.4:57810341-57810360 | MS.gene26193:CDS | 40.0% | |
| TTACAGCAACTGCAATGGAT+AGG | + | chr5.4:57809728-57809747 | MS.gene26193:CDS | 40.0% | |
| TTCCCAGGCAAAACAATTTC+CGG | - | chr5.4:57808959-57808978 | None:intergenic | 40.0% | |
| TTTAATGAGTGTTCCGGTCA+TGG | + | chr5.4:57810340-57810359 | MS.gene26193:CDS | 40.0% | |
| ! | AGATTGGACGAACTTTTCCA+AGG | + | chr5.4:57809760-57809779 | MS.gene26193:CDS | 40.0% |
| ! | GATTGGACGAACTTTTCCAA+GGG | + | chr5.4:57809761-57809780 | MS.gene26193:CDS | 40.0% |
| ! | TCAATTTTCCTAACAGTGCC+AGG | + | chr5.4:57810660-57810679 | MS.gene26193:intron | 40.0% |
| !! | AAACCGGAAATTGTTTTGCC+TGG | + | chr5.4:57808953-57808972 | MS.gene26193:CDS | 40.0% |
| !! | AACCGGAAATTGTTTTGCCT+GGG | + | chr5.4:57808954-57808973 | MS.gene26193:CDS | 40.0% |
| !! | AGGTTCTCGCCCTTTTAATT+TGG | - | chr5.4:57810793-57810812 | None:intergenic | 40.0% |
| AGCAACTGCAATGGATAGGT+GGG | + | chr5.4:57809732-57809751 | MS.gene26193:CDS | 45.0% | |
| AGCTCAATGAACAGAGCAGA+TGG | + | chr5.4:57810843-57810862 | MS.gene26193:CDS | 45.0% | |
| ATGTTCGCCTTCAGTGTTAG+AGG | + | chr5.4:57810177-57810196 | MS.gene26193:intron | 45.0% | |
| CAAATAGCTCTTCGCCTTTC+GGG | - | chr5.4:57809170-57809189 | None:intergenic | 45.0% | |
| CATACTCAGAGATGTTGGAG+AGG | + | chr5.4:57810445-57810464 | MS.gene26193:CDS | 45.0% | |
| CCAAATAGCTCTTCGCCTTT+CGG | - | chr5.4:57809171-57809190 | None:intergenic | 45.0% | |
| CGAAAGGCGAAGAGCTATTT+GGG | + | chr5.4:57809169-57809188 | MS.gene26193:CDS | 45.0% | |
| CGGTATGACGCATAACCAAA+TGG | - | chr5.4:57809513-57809532 | None:intergenic | 45.0% | |
| CGGTGAACTTGAAGTGAAAC+CGG | + | chr5.4:57808937-57808956 | MS.gene26193:CDS | 45.0% | |
| CTCTTCTAATGACTCCCGAA+AGG | + | chr5.4:57809153-57809172 | MS.gene26193:CDS | 45.0% | |
| GAAAACTTCGGCCACAAAGA+AGG | - | chr5.4:57810905-57810924 | None:intergenic | 45.0% | |
| GCGAGCACATTCGATAACAA+AGG | - | chr5.4:57808818-57808837 | None:intergenic | 45.0% | |
| GGATAGGTGGGAATCAAGAT+TGG | + | chr5.4:57809744-57809763 | MS.gene26193:CDS | 45.0% | |
| TCTACTTGAAAGGCAACGAG+TGG | + | chr5.4:57809912-57809931 | MS.gene26193:intron | 45.0% | |
| TGACGACATATTTGCCGGTA+AGG | + | chr5.4:57810736-57810755 | MS.gene26193:CDS | 45.0% | |
| TTAGAGGTCTCCTGTTCCAA+TGG | + | chr5.4:57808611-57808630 | MS.gene26193:CDS | 45.0% | |
| ! | ACCACAAGATGAATTGGCTC+TGG | + | chr5.4:57810700-57810719 | MS.gene26193:CDS | 45.0% |
| ! | CGGTTTCACTTCAAGTTCAC+CGG | - | chr5.4:57808939-57808958 | None:intergenic | 45.0% |
| !! | AAGATGAATTGGCTCTGGCA+GGG | + | chr5.4:57810705-57810724 | MS.gene26193:CDS | 45.0% |
| !! | AGGACGGATGAACTTGTTGA+TGG | + | chr5.4:57809688-57809707 | MS.gene26193:CDS | 45.0% |
| !! | GTTTTGGATGTTGCAGGTGT+GGG | + | chr5.4:57811546-57811565 | MS.gene26193:intron | 45.0% |
| !! | TGTTTTGGATGTTGCAGGTG+TGG | + | chr5.4:57811545-57811564 | MS.gene26193:intron | 45.0% |
| !!! | AAGGGTGTTTTGGATGTTGC+AGG | + | chr5.4:57811540-57811559 | MS.gene26193:intron | 45.0% |
| !!! | CTGCTTTTTCAGTGTGGTGT+AGG | + | chr5.4:57809665-57809684 | MS.gene26193:intron | 45.0% |
| !!! | CTTTTTCAGTGTGGTGTAGG+AGG | + | chr5.4:57809668-57809687 | MS.gene26193:intron | 45.0% |
| !!! | GGCGAGAACCTTTTTTGATG+AGG | + | chr5.4:57810802-57810821 | MS.gene26193:CDS | 45.0% |
| !!! | TGTGACGCAAAAGGGTGTTT+TGG | + | chr5.4:57811530-57811549 | MS.gene26193:intron | 45.0% |
| AACTTTCCTGCAACCAGCCT+AGG | + | chr5.4:57809949-57809968 | MS.gene26193:intron | 50.0% | |
| AAGAGGAAGCTGAGCTCTAC+CGG | + | chr5.4:57808917-57808936 | MS.gene26193:CDS | 50.0% | |
| AGCAGGCGTCTTTGGTTAAG+AGG | + | chr5.4:57808900-57808919 | MS.gene26193:CDS | 50.0% | |
| CAATGAACAGAGCAGATGGC+CGG | + | chr5.4:57810847-57810866 | MS.gene26193:CDS | 50.0% | |
| CAGCAACTGCAATGGATAGG+TGG | + | chr5.4:57809731-57809750 | MS.gene26193:CDS | 50.0% | |
| CCACTTGTCTGTCACCTTAC+CGG | - | chr5.4:57810753-57810772 | None:intergenic | 50.0% | |
| CCGAAAGGCGAAGAGCTATT+TGG | + | chr5.4:57809168-57809187 | MS.gene26193:CDS | 50.0% | |
| GAACAGGAGACCTCTAAGCT+AGG | - | chr5.4:57808608-57808627 | None:intergenic | 50.0% | |
| GAGTGTGTACAATGCTGCCT+TGG | + | chr5.4:57810394-57810413 | MS.gene26193:CDS | 50.0% | |
| GCATATCAAATGGACGCCCT+TGG | - | chr5.4:57809780-57809799 | None:intergenic | 50.0% | |
| GCCAGAGCCAATTCATCTTG+TGG | - | chr5.4:57810704-57810723 | None:intergenic | 50.0% | |
| GTAAGGTGACAGACAAGTGG+AGG | + | chr5.4:57810753-57810772 | MS.gene26193:CDS | 50.0% | |
| TAGATACACTCTTCCTCGCC+TGG | - | chr5.4:57810681-57810700 | None:intergenic | 50.0% | |
| TGAGGCAGAAAAGGGAGTGA+CGG | + | chr5.4:57810820-57810839 | MS.gene26193:CDS | 50.0% | |
| TGCGTTGAAATGCCCATGAC+CGG | - | chr5.4:57810356-57810375 | None:intergenic | 50.0% | |
| TGCTTCCTCTCCTAGCTTAG+AGG | + | chr5.4:57808595-57808614 | MS.gene26193:CDS | 50.0% | |
| TGTGGGGACAAAAGGAACCT+AGG | - | chr5.4:57809969-57809988 | None:intergenic | 50.0% | |
| TTCAGTGTGGTGTAGGAGGA+CGG | + | chr5.4:57809672-57809691 | MS.gene26193:intron | 50.0% | |
| TTGCTAGCACTCTCTAAGCC+AGG | - | chr5.4:57808791-57808810 | None:intergenic | 50.0% | |
| ! | GGCTGTTTCATCTGAGCAGA+AGG | + | chr5.4:57808859-57808878 | MS.gene26193:CDS | 50.0% |
| ! | TACAATGCTGCCTTGGCCTT+AGG | + | chr5.4:57810401-57810420 | MS.gene26193:CDS | 50.0% |
| ! | TATGCATGTGTTGGTCAGCC+TGG | + | chr5.4:57808770-57808789 | MS.gene26193:CDS | 50.0% |
| !! | CAAGATGAATTGGCTCTGGC+AGG | + | chr5.4:57810704-57810723 | MS.gene26193:CDS | 50.0% |
| !! | GGTTCTAAAGCAGGCGTCTT+TGG | + | chr5.4:57808892-57808911 | MS.gene26193:CDS | 50.0% |
| CCGGTAAGGTGACAGACAAG+TGG | + | chr5.4:57810750-57810769 | MS.gene26193:CDS | 55.0% | |
| GGAGACCTCTAAGCTAGGAG+AGG | - | chr5.4:57808603-57808622 | None:intergenic | 55.0% | |
| GGGACAAAAGGAACCTAGGC+TGG | - | chr5.4:57809965-57809984 | None:intergenic | 55.0% | |
| TTTCCTAACAGTGCCAGGCG+AGG | + | chr5.4:57810665-57810684 | MS.gene26193:intron | 55.0% | |
| ! | AAGGAACCTAGGCTGGTTGC+AGG | - | chr5.4:57809958-57809977 | None:intergenic | 55.0% |
| ACAGCCACTTCGCCTGCAGT+CGG | - | chr5.4:57808845-57808864 | None:intergenic | 60.0% | |
| CTTCCTCGCCTGGCACTGTT+AGG | - | chr5.4:57810671-57810690 | None:intergenic | 60.0% | |
| CAGCCACTTCGCCTGCAGTC+GGG | - | chr5.4:57808844-57808863 | None:intergenic | 65.0% | |
| GAACCCGACTGCAGGCGAAG+TGG | + | chr5.4:57808838-57808857 | MS.gene26193:CDS | 65.0% | |
| GTGCTCGCGAACCCGACTGC+AGG | + | chr5.4:57808830-57808849 | MS.gene26193:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 57808572 | 57811732 | 57808572 | ID=MS.gene26193 |
| chr5.4 | mRNA | 57808572 | 57811732 | 57808572 | ID=MS.gene26193.t1;Parent=MS.gene26193 |
| chr5.4 | exon | 57808572 | 57809052 | 57808572 | ID=MS.gene26193.t1.exon1;Parent=MS.gene26193.t1 |
| chr5.4 | CDS | 57808572 | 57809052 | 57808572 | ID=cds.MS.gene26193.t1;Parent=MS.gene26193.t1 |
| chr5.4 | exon | 57809150 | 57809200 | 57809150 | ID=MS.gene26193.t1.exon2;Parent=MS.gene26193.t1 |
| chr5.4 | CDS | 57809150 | 57809200 | 57809150 | ID=cds.MS.gene26193.t1;Parent=MS.gene26193.t1 |
| chr5.4 | exon | 57809677 | 57809849 | 57809677 | ID=MS.gene26193.t1.exon3;Parent=MS.gene26193.t1 |
| chr5.4 | CDS | 57809677 | 57809849 | 57809677 | ID=cds.MS.gene26193.t1;Parent=MS.gene26193.t1 |
| chr5.4 | exon | 57810233 | 57810468 | 57810233 | ID=MS.gene26193.t1.exon4;Parent=MS.gene26193.t1 |
| chr5.4 | CDS | 57810233 | 57810468 | 57810233 | ID=cds.MS.gene26193.t1;Parent=MS.gene26193.t1 |
| chr5.4 | exon | 57810676 | 57810868 | 57810676 | ID=MS.gene26193.t1.exon5;Parent=MS.gene26193.t1 |
| chr5.4 | CDS | 57810676 | 57810868 | 57810676 | ID=cds.MS.gene26193.t1;Parent=MS.gene26193.t1 |
| chr5.4 | exon | 57811562 | 57811732 | 57811562 | ID=MS.gene26193.t1.exon6;Parent=MS.gene26193.t1 |
| chr5.4 | CDS | 57811562 | 57811732 | 57811562 | ID=cds.MS.gene26193.t1;Parent=MS.gene26193.t1 |
| Gene Sequence |
| Protein sequence |
