Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66848.t1 | XP_003605973.1 | 96.1 | 102 | 1 | 1 | 1 | 102 | 51 | 149 | 1.40E-43 | 185.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66848.t1 | Q9XFB0 | 58.0 | 100 | 36 | 3 | 5 | 102 | 54 | 149 | 2.4e-18 | 92.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66848.t1 | G7JER5 | 96.1 | 102 | 1 | 1 | 1 | 102 | 51 | 149 | 1.0e-43 | 185.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene66848.t1 | TF | C2C2-YABBY |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049351 | MS.gene66848 | 0.834751 | 2.50E-56 | -1.69E-46 |
MS.gene049356 | MS.gene66848 | 0.824875 | 6.37E-54 | -1.69E-46 |
MS.gene049369 | MS.gene66848 | 0.828699 | 7.78E-55 | -1.69E-46 |
MS.gene049491 | MS.gene66848 | 0.809815 | 1.57E-50 | -1.69E-46 |
MS.gene049614 | MS.gene66848 | 0.806524 | 7.89E-50 | -1.69E-46 |
MS.gene049661 | MS.gene66848 | 0.845024 | 5.25E-59 | -1.69E-46 |
MS.gene049662 | MS.gene66848 | 0.844537 | 7.11E-59 | -1.69E-46 |
MS.gene049758 | MS.gene66848 | 0.816998 | 4.14E-52 | -1.69E-46 |
MS.gene050076 | MS.gene66848 | 0.8104 | 1.17E-50 | -1.69E-46 |
MS.gene050128 | MS.gene66848 | 0.843777 | 1.14E-58 | -1.69E-46 |
MS.gene050301 | MS.gene66848 | 0.836263 | 1.04E-56 | -1.69E-46 |
MS.gene050397 | MS.gene66848 | 0.839386 | 1.63E-57 | -1.69E-46 |
MS.gene050432 | MS.gene66848 | 0.815397 | 9.44E-52 | -1.69E-46 |
MS.gene050529 | MS.gene66848 | 0.809771 | 1.60E-50 | -1.69E-46 |
MS.gene050767 | MS.gene66848 | 0.828646 | 8.01E-55 | -1.69E-46 |
MS.gene050770 | MS.gene66848 | 0.828167 | 1.04E-54 | -1.69E-46 |
MS.gene050971 | MS.gene66848 | 0.812684 | 3.75E-51 | -1.69E-46 |
MS.gene05101 | MS.gene66848 | 0.827249 | 1.74E-54 | -1.69E-46 |
MS.gene05105 | MS.gene66848 | 0.831287 | 1.82E-55 | -1.69E-46 |
MS.gene051255 | MS.gene66848 | 0.813344 | 2.68E-51 | -1.69E-46 |
MS.gene051692 | MS.gene66848 | 0.81195 | 5.42E-51 | -1.69E-46 |
MS.gene052078 | MS.gene66848 | 0.848906 | 4.55E-60 | -1.69E-46 |
MS.gene052178 | MS.gene66848 | 0.848295 | 6.72E-60 | -1.69E-46 |
MS.gene052188 | MS.gene66848 | 0.832547 | 8.88E-56 | -1.69E-46 |
MS.gene052287 | MS.gene66848 | 0.823262 | 1.52E-53 | -1.69E-46 |
MS.gene052290 | MS.gene66848 | 0.812944 | 3.29E-51 | -1.69E-46 |
MS.gene052310 | MS.gene66848 | 0.828086 | 1.09E-54 | -1.69E-46 |
MS.gene052326 | MS.gene66848 | 0.807947 | 3.94E-50 | -1.69E-46 |
MS.gene052340 | MS.gene66848 | 0.824769 | 6.75E-54 | -1.69E-46 |
MS.gene052379 | MS.gene66848 | 0.805121 | 1.56E-49 | -1.69E-46 |
MS.gene052484 | MS.gene66848 | 0.812956 | 3.27E-51 | -1.69E-46 |
MS.gene052485 | MS.gene66848 | 0.818073 | 2.37E-52 | -1.69E-46 |
MS.gene053103 | MS.gene66848 | 0.819302 | 1.25E-52 | -1.69E-46 |
MS.gene053104 | MS.gene66848 | 0.81346 | 2.53E-51 | -1.69E-46 |
MS.gene05316 | MS.gene66848 | 0.805648 | 1.21E-49 | -1.69E-46 |
MS.gene053209 | MS.gene66848 | 0.858011 | 1.10E-62 | -1.69E-46 |
MS.gene053322 | MS.gene66848 | 0.820221 | 7.69E-53 | -1.69E-46 |
MS.gene053449 | MS.gene66848 | 0.83146 | 1.65E-55 | -1.69E-46 |
MS.gene053557 | MS.gene66848 | 0.817307 | 3.53E-52 | -1.69E-46 |
MS.gene053813 | MS.gene66848 | 0.818177 | 2.25E-52 | -1.69E-46 |
MS.gene054010 | MS.gene66848 | 0.817603 | 3.03E-52 | -1.69E-46 |
MS.gene054011 | MS.gene66848 | 0.824668 | 7.13E-54 | -1.69E-46 |
MS.gene054012 | MS.gene66848 | 0.825811 | 3.82E-54 | -1.69E-46 |
MS.gene054013 | MS.gene66848 | 0.826988 | 2.01E-54 | -1.69E-46 |
MS.gene054376 | MS.gene66848 | 0.82421 | 9.13E-54 | -1.69E-46 |
MS.gene054802 | MS.gene66848 | 0.802743 | 4.85E-49 | -1.69E-46 |
MS.gene054803 | MS.gene66848 | 0.801742 | 7.80E-49 | -1.69E-46 |
MS.gene054804 | MS.gene66848 | 0.804519 | 2.08E-49 | -1.69E-46 |
MS.gene05505 | MS.gene66848 | 0.806218 | 9.15E-50 | -1.69E-46 |
MS.gene055116 | MS.gene66848 | 0.807377 | 5.21E-50 | -1.69E-46 |
MS.gene055254 | MS.gene66848 | 0.808833 | 2.55E-50 | -1.69E-46 |
MS.gene055277 | MS.gene66848 | 0.877357 | 6.71E-69 | -1.69E-46 |
MS.gene055390 | MS.gene66848 | 0.817887 | 2.61E-52 | -1.69E-46 |
MS.gene055422 | MS.gene66848 | 0.824419 | 8.16E-54 | -1.69E-46 |
MS.gene055499 | MS.gene66848 | 0.80781 | 4.21E-50 | -1.69E-46 |
MS.gene055604 | MS.gene66848 | 0.816203 | 6.24E-52 | -1.69E-46 |
MS.gene05592 | MS.gene66848 | 0.84157 | 4.39E-58 | -1.69E-46 |
MS.gene056191 | MS.gene66848 | 0.845278 | 4.49E-59 | -1.69E-46 |
MS.gene056410 | MS.gene66848 | 0.87472 | 5.42E-68 | -1.69E-46 |
MS.gene056609 | MS.gene66848 | 0.845628 | 3.61E-59 | -1.69E-46 |
MS.gene056611 | MS.gene66848 | 0.826489 | 2.64E-54 | -1.69E-46 |
MS.gene056612 | MS.gene66848 | 0.805518 | 1.28E-49 | -1.69E-46 |
MS.gene056796 | MS.gene66848 | 0.813191 | 2.90E-51 | -1.69E-46 |
MS.gene056902 | MS.gene66848 | 0.817605 | 3.02E-52 | -1.69E-46 |
MS.gene056931 | MS.gene66848 | 0.806352 | 8.58E-50 | -1.69E-46 |
MS.gene056933 | MS.gene66848 | 0.800908 | 1.16E-48 | -1.69E-46 |
MS.gene056935 | MS.gene66848 | 0.800199 | 1.61E-48 | -1.69E-46 |
MS.gene05702 | MS.gene66848 | 0.80981 | 1.57E-50 | -1.69E-46 |
MS.gene057129 | MS.gene66848 | 0.810795 | 9.65E-51 | -1.69E-46 |
MS.gene05733 | MS.gene66848 | 0.806362 | 8.54E-50 | -1.69E-46 |
MS.gene057450 | MS.gene66848 | 0.809561 | 1.78E-50 | -1.69E-46 |
MS.gene057796 | MS.gene66848 | 0.839223 | 1.80E-57 | -1.69E-46 |
MS.gene057926 | MS.gene66848 | 0.803662 | 3.13E-49 | -1.69E-46 |
MS.gene058006 | MS.gene66848 | 0.801202 | 1.01E-48 | -1.69E-46 |
MS.gene058082 | MS.gene66848 | 0.837144 | 6.18E-57 | -1.69E-46 |
MS.gene05811 | MS.gene66848 | 0.844623 | 6.74E-59 | -1.69E-46 |
MS.gene058293 | MS.gene66848 | 0.82947 | 5.06E-55 | -1.69E-46 |
MS.gene058365 | MS.gene66848 | 0.800368 | 1.49E-48 | -1.69E-46 |
MS.gene05842 | MS.gene66848 | 0.800503 | 1.40E-48 | -1.69E-46 |
MS.gene058660 | MS.gene66848 | 0.853295 | 2.63E-61 | -1.69E-46 |
MS.gene058787 | MS.gene66848 | 0.820609 | 6.27E-53 | -1.69E-46 |
MS.gene058928 | MS.gene66848 | 0.836828 | 7.44E-57 | -1.69E-46 |
MS.gene05907 | MS.gene66848 | 0.835013 | 2.15E-56 | -1.69E-46 |
MS.gene059294 | MS.gene66848 | 0.880252 | 6.40E-70 | -1.69E-46 |
MS.gene059366 | MS.gene66848 | 0.825653 | 4.17E-54 | -1.69E-46 |
MS.gene059518 | MS.gene66848 | 0.805954 | 1.04E-49 | -1.69E-46 |
MS.gene059536 | MS.gene66848 | 0.821955 | 3.07E-53 | -1.69E-46 |
MS.gene059597 | MS.gene66848 | 0.815218 | 1.03E-51 | -1.69E-46 |
MS.gene05959 | MS.gene66848 | 0.805049 | 1.61E-49 | -1.69E-46 |
MS.gene059676 | MS.gene66848 | 0.845149 | 4.86E-59 | -1.69E-46 |
MS.gene059688 | MS.gene66848 | 0.836843 | 7.38E-57 | -1.69E-46 |
MS.gene059692 | MS.gene66848 | 0.84812 | 7.51E-60 | -1.69E-46 |
MS.gene059695 | MS.gene66848 | 0.840976 | 6.28E-58 | -1.69E-46 |
MS.gene059708 | MS.gene66848 | 0.808578 | 2.89E-50 | -1.69E-46 |
MS.gene059711 | MS.gene66848 | 0.822702 | 2.06E-53 | -1.69E-46 |
MS.gene059807 | MS.gene66848 | 0.804676 | 1.93E-49 | -1.69E-46 |
MS.gene05984 | MS.gene66848 | 0.822473 | 2.32E-53 | -1.69E-46 |
MS.gene059894 | MS.gene66848 | 0.826993 | 2.00E-54 | -1.69E-46 |
MS.gene059960 | MS.gene66848 | 0.814441 | 1.54E-51 | -1.69E-46 |
MS.gene059974 | MS.gene66848 | 0.861517 | 9.70E-64 | -1.69E-46 |
MS.gene060005 | MS.gene66848 | 0.826065 | 3.33E-54 | -1.69E-46 |
MS.gene06037 | MS.gene66848 | 0.842985 | 1.85E-58 | -1.69E-46 |
MS.gene060799 | MS.gene66848 | 0.802913 | 4.48E-49 | -1.69E-46 |
MS.gene060800 | MS.gene66848 | 0.822661 | 2.10E-53 | -1.69E-46 |
MS.gene060801 | MS.gene66848 | 0.800436 | 1.44E-48 | -1.69E-46 |
MS.gene060804 | MS.gene66848 | 0.835173 | 1.96E-56 | -1.69E-46 |
MS.gene060818 | MS.gene66848 | 0.843704 | 1.19E-58 | -1.69E-46 |
MS.gene060837 | MS.gene66848 | 0.819388 | 1.19E-52 | -1.69E-46 |
MS.gene061041 | MS.gene66848 | 0.832133 | 1.12E-55 | -1.69E-46 |
MS.gene061049 | MS.gene66848 | 0.838236 | 3.24E-57 | -1.69E-46 |
MS.gene061051 | MS.gene66848 | -0.838824 | 2.29E-57 | -1.69E-46 |
MS.gene061200 | MS.gene66848 | 0.827092 | 1.89E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66848.t1 | MTR_4g050300 | 96.078 | 102 | 1 | 1 | 1 | 102 | 51 | 149 | 3.83e-63 | 189 |
MS.gene66848.t1 | MTR_2g087740 | 66.667 | 108 | 28 | 4 | 1 | 102 | 54 | 159 | 4.88e-33 | 113 |
MS.gene66848.t1 | MTR_4g114730 | 67.143 | 70 | 22 | 1 | 34 | 102 | 84 | 153 | 1.55e-20 | 81.6 |
MS.gene66848.t1 | MTR_4g025900 | 90.000 | 40 | 4 | 0 | 63 | 102 | 135 | 174 | 9.34e-19 | 77.8 |
MS.gene66848.t1 | MTR_5g034030 | 48.864 | 88 | 39 | 2 | 21 | 102 | 70 | 157 | 2.04e-18 | 76.6 |
MS.gene66848.t1 | MTR_4g101660 | 85.000 | 40 | 6 | 0 | 63 | 102 | 130 | 169 | 1.56e-17 | 74.3 |
MS.gene66848.t1 | MTR_5g046230 | 72.549 | 51 | 12 | 1 | 54 | 102 | 101 | 151 | 1.95e-17 | 73.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66848.t1 | AT1G08465 | 58.000 | 100 | 36 | 3 | 5 | 102 | 54 | 149 | 3.26e-27 | 98.6 |
MS.gene66848.t1 | AT2G45190 | 72.727 | 66 | 16 | 2 | 39 | 102 | 49 | 114 | 2.04e-23 | 88.6 |
MS.gene66848.t1 | AT2G45190 | 73.846 | 65 | 15 | 2 | 40 | 102 | 114 | 178 | 7.85e-23 | 88.6 |
MS.gene66848.t1 | AT2G26580 | 66.667 | 72 | 23 | 1 | 31 | 102 | 72 | 142 | 4.76e-20 | 79.7 |
MS.gene66848.t1 | AT2G26580 | 66.667 | 72 | 23 | 1 | 31 | 102 | 72 | 142 | 4.76e-20 | 79.7 |
MS.gene66848.t1 | AT4G00180 | 92.500 | 40 | 3 | 0 | 63 | 102 | 120 | 159 | 2.97e-19 | 78.6 |
MS.gene66848.t1 | AT4G00180 | 92.500 | 40 | 3 | 0 | 63 | 102 | 151 | 190 | 6.31e-19 | 78.6 |
MS.gene66848.t1 | AT1G69180 | 68.182 | 44 | 14 | 0 | 59 | 102 | 109 | 152 | 5.35e-16 | 69.7 |
MS.gene66848.t1 | AT1G23420 | 69.767 | 43 | 13 | 0 | 60 | 102 | 130 | 172 | 1.64e-13 | 63.9 |
MS.gene66848.t1 | AT1G23420 | 69.767 | 43 | 13 | 0 | 60 | 102 | 161 | 203 | 2.77e-13 | 63.5 |
Find 27 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGGCTGATATCTGGATTAC+TGG | 0.287474 | 4.4:-52054561 | None:intergenic |
GCCTCCCTGTGGCTGATATC+TGG | 0.289400 | 4.4:-52054569 | None:intergenic |
GAAGCAAGCAGCAAGGAAAT+TGG | 0.345303 | 4.4:+52053056 | MS.gene66848:CDS |
GGAGGAAATTCAAAGGATTA+AGG | 0.360502 | 4.4:+52054538 | MS.gene66848:CDS |
ATATAACTTACTTAATGAAC+CGG | 0.422652 | 4.4:-52054180 | None:intergenic |
GGGAGTTGAGGAGGAGGAAA+TGG | 0.440779 | 4.4:-52051113 | None:intergenic |
CGACGAATGGGAGGAATCCT+AGG | 0.445790 | 4.4:-52053140 | None:intergenic |
GTGTTCCTTCTGCTTACAAC+CGG | 0.449198 | 4.4:+52054161 | MS.gene66848:CDS |
TCCTCCTCCTCAACTCCCTC+AGG | 0.474865 | 4.4:+52051118 | MS.gene66848:CDS |
CAACAAAATAGCATCATTTG+AGG | 0.493091 | 4.4:+52053097 | MS.gene66848:CDS |
AGAGTGTGACTCACGACGAA+TGG | 0.516345 | 4.4:-52053153 | None:intergenic |
TAGTAGAGCACGAACATCCT+AGG | 0.516780 | 4.4:+52053123 | MS.gene66848:CDS |
GAGTGTGACTCACGACGAAT+GGG | 0.531160 | 4.4:-52053152 | None:intergenic |
ACCTGAGGGAGTTGAGGAGG+AGG | 0.539948 | 4.4:-52051119 | None:intergenic |
TGAATTATGTGCTGTTTCTG+TGG | 0.544740 | 4.4:-52053029 | None:intergenic |
GGAGGAAATGGCTGAAGTAA+TGG | 0.547935 | 4.4:-52051101 | None:intergenic |
AAACATACCTGAGGGAGTTG+AGG | 0.577695 | 4.4:-52051125 | None:intergenic |
ATGAACCGGTTGTAAGCAGA+AGG | 0.582569 | 4.4:-52054166 | None:intergenic |
GTAATCCAGATATCAGCCAC+AGG | 0.588300 | 4.4:+52054564 | MS.gene66848:CDS |
TCTGTAGGGAGGAAATTCAA+AGG | 0.621966 | 4.4:+52054531 | MS.gene66848:intron |
CTGAGCTGAAAGCCTCCCTG+TGG | 0.623676 | 4.4:-52054580 | None:intergenic |
CAGGGAGGCTTTCAGCTCAG+CGG | 0.634037 | 4.4:+52054583 | MS.gene66848:CDS |
CATACCTGAGGGAGTTGAGG+AGG | 0.635233 | 4.4:-52051122 | None:intergenic |
TGTGACTCACGACGAATGGG+AGG | 0.645995 | 4.4:-52053149 | None:intergenic |
TCATGAAGAAGCAAGCAGCA+AGG | 0.659976 | 4.4:+52053049 | MS.gene66848:CDS |
TCCAGATATCAGCCACAGGG+AGG | 0.683704 | 4.4:+52054568 | MS.gene66848:CDS |
TAATCCAGATATCAGCCACA+GGG | 0.696359 | 4.4:+52054565 | MS.gene66848:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAAATATTATAAA+AGG | - | chr4.4:52051719-52051738 | None:intergenic | 0.0% |
!!! | TTATAATATTTTTTTTTTTT+AGG | + | chr4.4:52051720-52051739 | MS.gene66848:intron | 0.0% |
!! | AAAAGTAATTAATCAAAAAT+TGG | - | chr4.4:52052979-52052998 | None:intergenic | 10.0% |
!! | AATTATATAAATAGAAACAT+TGG | - | chr4.4:52054479-52054498 | None:intergenic | 10.0% |
!! | CTATTAAAAAAACATAAATT+AGG | - | chr4.4:52052015-52052034 | None:intergenic | 10.0% |
!! | GTTTCTATTTATATAATTAA+AGG | + | chr4.4:52054481-52054500 | MS.gene66848:intron | 10.0% |
!! | TAAAATAAATAAATTAGCTA+TGG | + | chr4.4:52051897-52051916 | MS.gene66848:intron | 10.0% |
!!! | AAAATAGTATTTTTTATTTG+TGG | - | chr4.4:52052653-52052672 | None:intergenic | 10.0% |
!!! | AATATTTTTTTTTTTTAGGA+TGG | + | chr4.4:52051724-52051743 | MS.gene66848:intron | 10.0% |
!!! | AATTTGTTACTTAAAAATAA+TGG | - | chr4.4:52053471-52053490 | None:intergenic | 10.0% |
!!! | ATATTTTTTTTTTTTAGGAT+GGG | + | chr4.4:52051725-52051744 | MS.gene66848:intron | 10.0% |
!!! | GATTAAAAACTTTTTTTAAA+AGG | + | chr4.4:52052329-52052348 | MS.gene66848:intron | 10.0% |
!!! | TTAATAGTAAAAATGATTTT+TGG | + | chr4.4:52052028-52052047 | MS.gene66848:intron | 10.0% |
!! | AATTAGCAATAGATTAATTA+AGG | - | chr4.4:52053004-52053023 | None:intergenic | 15.0% |
!! | ATTTAATAACAGATTTAGAA+AGG | + | chr4.4:52051957-52051976 | MS.gene66848:intron | 15.0% |
!! | ATTTATATAGACAAATTCTA+TGG | + | chr4.4:52052243-52052262 | MS.gene66848:intron | 15.0% |
!!! | AAATTAGTAAGTACATATTT+TGG | - | chr4.4:52051504-52051523 | None:intergenic | 15.0% |
!!! | ACACTTTCTTAATATATTTT+TGG | + | chr4.4:52054414-52054433 | MS.gene66848:intron | 15.0% |
!!! | AGCTAATTTATTTATTTTAG+TGG | - | chr4.4:52051896-52051915 | None:intergenic | 15.0% |
!!! | ATTTTTGGTAAAAACAAAAA+GGG | + | chr4.4:52052043-52052062 | MS.gene66848:intron | 15.0% |
!!! | CACTTTCTTAATATATTTTT+GGG | + | chr4.4:52054415-52054434 | MS.gene66848:intron | 15.0% |
!!! | TAATTTTTGTATTAGCTTTT+TGG | + | chr4.4:52053175-52053194 | MS.gene66848:intron | 15.0% |
!!! | TATACTGAAGTTTTATTTTT+TGG | + | chr4.4:52052172-52052191 | MS.gene66848:intron | 15.0% |
!!! | TATTTTTTTTTTTTAGGATG+GGG | + | chr4.4:52051726-52051745 | MS.gene66848:intron | 15.0% |
!!! | TGTTTTGTATATATTCATAT+AGG | + | chr4.4:52053497-52053516 | MS.gene66848:intron | 15.0% |
!!! | TTTTTCTTCATCAATTTATA+TGG | + | chr4.4:52053538-52053557 | MS.gene66848:intron | 15.0% |
!! | AATGACATAAAAGAGATATT+TGG | - | chr4.4:52052381-52052400 | None:intergenic | 20.0% |
!! | ATATAACTTACTTAATGAAC+CGG | - | chr4.4:52054183-52054202 | None:intergenic | 20.0% |
!! | CTAAATTTGAATAAACAAAG+TGG | + | chr4.4:52053226-52053245 | MS.gene66848:intron | 20.0% |
!! | GTATATAGTTGAACTTATTA+AGG | + | chr4.4:52051688-52051707 | MS.gene66848:intron | 20.0% |
!! | GTGTATTTAATACATTGAAA+AGG | - | chr4.4:52051543-52051562 | None:intergenic | 20.0% |
!! | TGACATTGTTATAATCTTAA+AGG | - | chr4.4:52051827-52051846 | None:intergenic | 20.0% |
!! | TGTTTCATATTCATCTTATT+TGG | + | chr4.4:52051143-52051162 | MS.gene66848:intron | 20.0% |
!!! | AAATAATACTTTTAGGAGTT+AGG | + | chr4.4:52052936-52052955 | MS.gene66848:intron | 20.0% |
!!! | ACACTCAAATACTATTTTTA+TGG | + | chr4.4:52052518-52052537 | MS.gene66848:intron | 20.0% |
!!! | ATAGAAACATTGGTAAATTT+TGG | - | chr4.4:52054469-52054488 | None:intergenic | 20.0% |
!!! | ATAGTATTTTTTATTTGTGG+TGG | - | chr4.4:52052650-52052669 | None:intergenic | 20.0% |
!!! | ATATTTATTTTTGAGAGTCA+TGG | + | chr4.4:52053677-52053696 | MS.gene66848:intron | 20.0% |
!!! | GATAGTGAAATAATACTTTT+AGG | + | chr4.4:52052929-52052948 | MS.gene66848:intron | 20.0% |
!!! | GATTTTTGGTAAAAACAAAA+AGG | + | chr4.4:52052042-52052061 | MS.gene66848:intron | 20.0% |
!!! | GCTTATATGTAATTTTTGTA+GGG | - | chr4.4:52054394-52054413 | None:intergenic | 20.0% |
!!! | TGCTTATATGTAATTTTTGT+AGG | - | chr4.4:52054395-52054414 | None:intergenic | 20.0% |
!!! | TTGCTTTTTATTTGAAGAAA+GGG | + | chr4.4:52054356-52054375 | MS.gene66848:intron | 20.0% |
!!! | TTTGCTTTTTATTTGAAGAA+AGG | + | chr4.4:52054355-52054374 | MS.gene66848:intron | 20.0% |
!!! | TTTTTTTAAAAGGAAAACGA+AGG | + | chr4.4:52052339-52052358 | MS.gene66848:intron | 20.0% |
! | AACTTCAGTATAATGTTTGA+AGG | - | chr4.4:52052164-52052183 | None:intergenic | 25.0% |
! | AAGAAAAAAAATTCCCAAAC+TGG | - | chr4.4:52053526-52053545 | None:intergenic | 25.0% |
! | AGAAAAAAAATTCCCAAACT+GGG | - | chr4.4:52053525-52053544 | None:intergenic | 25.0% |
! | CTTGAAGAAATGGTTAATTT+AGG | - | chr4.4:52053837-52053856 | None:intergenic | 25.0% |
! | GAGTCATGGTAATTAATTAT+TGG | + | chr4.4:52053691-52053710 | MS.gene66848:intron | 25.0% |
! | GGTAAATAGTATATACACAT+TGG | - | chr4.4:52052835-52052854 | None:intergenic | 25.0% |
! | TAAGTTCAACTATATACACT+AGG | - | chr4.4:52051685-52051704 | None:intergenic | 25.0% |
! | TGATGCTTAATTTATTGAGT+CGG | + | chr4.4:52053442-52053461 | MS.gene66848:intron | 25.0% |
! | TGGTAATTAATTATTGGCAT+TGG | + | chr4.4:52053697-52053716 | MS.gene66848:intron | 25.0% |
! | TGGTAATTGTAAACTATTAC+TGG | + | chr4.4:52053717-52053736 | MS.gene66848:intron | 25.0% |
! | TGTTATAATCTTAAAGGAGA+AGG | - | chr4.4:52051821-52051840 | None:intergenic | 25.0% |
! | TTTGACAAACTAGTAGATTA+AGG | - | chr4.4:52053960-52053979 | None:intergenic | 25.0% |
!! | ATTTTATGTGTAAGAACCAA+TGG | + | chr4.4:52052075-52052094 | MS.gene66848:intron | 25.0% |
!! | CTTTCTCATTTTCTCATTAT+AGG | + | chr4.4:52051934-52051953 | MS.gene66848:intron | 25.0% |
!! | TACTAGTTTGTCAAAAAATG+AGG | + | chr4.4:52053965-52053984 | MS.gene66848:intron | 25.0% |
!!! | ATGGTTAATTTAGGTTTTCT+TGG | - | chr4.4:52053828-52053847 | None:intergenic | 25.0% |
!!! | TACTATTTACCACTTTTGTT+AGG | + | chr4.4:52052844-52052863 | MS.gene66848:intron | 25.0% |
!!! | TATTTATTTTAGTGGTGTGT+TGG | - | chr4.4:52051888-52051907 | None:intergenic | 25.0% |
!!! | TATTTTTTATTTGTGGTGGT+CGG | - | chr4.4:52052646-52052665 | None:intergenic | 25.0% |
ACATGCAGTTGCTATAATAA+AGG | + | chr4.4:52051384-52051403 | MS.gene66848:intron | 30.0% | |
ATCTTCAAGAATTATCACGA+AGG | - | chr4.4:52051417-52051436 | None:intergenic | 30.0% | |
ATGAATATGAAACATACCTG+AGG | - | chr4.4:52051137-52051156 | None:intergenic | 30.0% | |
ATTTGTCTTGCTTGAAGAAA+TGG | - | chr4.4:52053847-52053866 | None:intergenic | 30.0% | |
CAACAAAATAGCATCATTTG+AGG | + | chr4.4:52053097-52053116 | MS.gene66848:CDS | 30.0% | |
CAATGTCAAAAAAGCTTCTA+AGG | - | chr4.4:52052810-52052829 | None:intergenic | 30.0% | |
GGATAATGCATAAAATATGC+AGG | + | chr4.4:52052605-52052624 | MS.gene66848:intron | 30.0% | |
GTCTATATAAATTAGAGCAC+AGG | - | chr4.4:52052235-52052254 | None:intergenic | 30.0% | |
TACCTAAAGAAACAAACCAT+TGG | - | chr4.4:52052094-52052113 | None:intergenic | 30.0% | |
TATATAAATTAGAGCACAGG+TGG | - | chr4.4:52052232-52052251 | None:intergenic | 30.0% | |
TATTATAGCAACTGCATGTA+TGG | - | chr4.4:52051383-52051402 | None:intergenic | 30.0% | |
TCTTCAAGCAAGACAAATAA+AGG | + | chr4.4:52053849-52053868 | MS.gene66848:intron | 30.0% | |
TGAATATGAAACATACCTGA+GGG | - | chr4.4:52051136-52051155 | None:intergenic | 30.0% | |
TTAGGGAGAGAAATTTAGAA+CGG | - | chr4.4:52051997-52052016 | None:intergenic | 30.0% | |
TTGATACCACATCAATTTGT+TGG | - | chr4.4:52051328-52051347 | None:intergenic | 30.0% | |
TTGGACTTTAATTCAATGAG+AGG | - | chr4.4:52051869-52051888 | None:intergenic | 30.0% | |
TTTGTCATGTTCATGTAACA+TGG | - | chr4.4:52051642-52051661 | None:intergenic | 30.0% | |
!! | AACCAATGGTTTGTTTCTTT+AGG | + | chr4.4:52052089-52052108 | MS.gene66848:intron | 30.0% |
!! | AGTACATATTTTGGAAGTCA+CGG | - | chr4.4:52051495-52051514 | None:intergenic | 30.0% |
!!! | ATTTTTTATTTGTGGTGGTC+GGG | - | chr4.4:52052645-52052664 | None:intergenic | 30.0% |
!!! | TTTTTTTTTAGGATGGGGAA+GGG | + | chr4.4:52051731-52051750 | MS.gene66848:intron | 30.0% |
!!! | TTTTTTTTTTAGGATGGGGA+AGG | + | chr4.4:52051730-52051749 | MS.gene66848:intron | 30.0% |
AAGTGAAGTGACATGAACAA+TGG | + | chr4.4:52053774-52053793 | MS.gene66848:intron | 35.0% | |
ACACTATCCCAATACAAAGA+GGG | + | chr4.4:52051610-52051629 | MS.gene66848:intron | 35.0% | |
AGGATGACAGCAATGAATTA+AGG | - | chr4.4:52053610-52053629 | None:intergenic | 35.0% | |
ATGTGTGATTGTTGTCATTC+AGG | - | chr4.4:52053271-52053290 | None:intergenic | 35.0% | |
ATTCATATAGGTTCCCAGTT+TGG | + | chr4.4:52053509-52053528 | MS.gene66848:intron | 35.0% | |
ATTTCCTCTAACCTCAAAGA+GGG | - | chr4.4:52051171-52051190 | None:intergenic | 35.0% | |
CAAGACAAATAAAGGACTCT+GGG | + | chr4.4:52053857-52053876 | MS.gene66848:intron | 35.0% | |
CTTCATCAATTTATATGGCC+CGG | + | chr4.4:52053543-52053562 | MS.gene66848:intron | 35.0% | |
GACAGCAATGAATTAAGGAT+GGG | - | chr4.4:52053605-52053624 | None:intergenic | 35.0% | |
GGAGAAGGTTCAAATATTCA+AGG | - | chr4.4:52051806-52051825 | None:intergenic | 35.0% | |
GGAGGAAATTCAAAGGATTA+AGG | + | chr4.4:52054538-52054557 | MS.gene66848:CDS | 35.0% | |
TGACAGCAATGAATTAAGGA+TGG | - | chr4.4:52053606-52053625 | None:intergenic | 35.0% | |
TGTGAACTCATCTATGTTTG+CGG | - | chr4.4:52051579-52051598 | None:intergenic | 35.0% | |
TGTGTGATTGTTGTCATTCA+GGG | - | chr4.4:52053270-52053289 | None:intergenic | 35.0% | |
TTAGGACACTCATTAGCAAA+AGG | - | chr4.4:52051464-52051483 | None:intergenic | 35.0% | |
TTCATATAGGTTCCCAGTTT+GGG | + | chr4.4:52053510-52053529 | MS.gene66848:intron | 35.0% | |
! | ATGTCTTTTCTCTATAGCTG+TGG | - | chr4.4:52054140-52054159 | None:intergenic | 35.0% |
! | TCTATGTTTGCGGAGATTTT+AGG | - | chr4.4:52051569-52051588 | None:intergenic | 35.0% |
!! | AAAGGACTCTGGGATAAAAT+TGG | + | chr4.4:52053867-52053886 | MS.gene66848:intron | 35.0% |
!! | ACTTTTAGGAGTTAGGACTT+GGG | + | chr4.4:52052943-52052962 | MS.gene66848:intron | 35.0% |
!! | TACTTTTAGGAGTTAGGACT+TGG | + | chr4.4:52052942-52052961 | MS.gene66848:intron | 35.0% |
!! | TCAACACTACTATTTTCGAG+AGG | + | chr4.4:52054301-52054320 | MS.gene66848:intron | 35.0% |
!! | TGAATTATGTGCTGTTTCTG+TGG | - | chr4.4:52053032-52053051 | None:intergenic | 35.0% |
!!! | TTTTTTATTTGTGGTGGTCG+GGG | - | chr4.4:52052644-52052663 | None:intergenic | 35.0% |
!!! | TTTTTTTTAGGATGGGGAAG+GGG | + | chr4.4:52051732-52051751 | MS.gene66848:intron | 35.0% |
AACTGCATGTATGGTAAGTG+GGG | - | chr4.4:52051374-52051393 | None:intergenic | 40.0% | |
AGCAAACTCCGATCAATAAC+TGG | - | chr4.4:52053747-52053766 | None:intergenic | 40.0% | |
ATGCATAAAATATGCAGGCC+TGG | + | chr4.4:52052610-52052629 | MS.gene66848:intron | 40.0% | |
ATGCATGCATGTGTTCTACT+AGG | - | chr4.4:52053637-52053656 | None:intergenic | 40.0% | |
CAAAGTGGCAACTACTAACT+AGG | + | chr4.4:52053241-52053260 | MS.gene66848:intron | 40.0% | |
CAACTGCATGTATGGTAAGT+GGG | - | chr4.4:52051375-52051394 | None:intergenic | 40.0% | |
CATCACTCTCCTAACAAAAG+TGG | - | chr4.4:52052856-52052875 | None:intergenic | 40.0% | |
CATTTCCTCTAACCTCAAAG+AGG | - | chr4.4:52051172-52051191 | None:intergenic | 40.0% | |
CTGGTACTCCAGTTATTGAT+CGG | + | chr4.4:52053736-52053755 | MS.gene66848:intron | 40.0% | |
GACACTATCCCAATACAAAG+AGG | + | chr4.4:52051609-52051628 | MS.gene66848:intron | 40.0% | |
GCAAGACAAATAAAGGACTC+TGG | + | chr4.4:52053856-52053875 | MS.gene66848:intron | 40.0% | |
GTGTGATTGTTGTCATTCAG+GGG | - | chr4.4:52053269-52053288 | None:intergenic | 40.0% | |
GTTACGTAACGTCACAATCT+TGG | - | chr4.4:52053574-52053593 | None:intergenic | 40.0% | |
TAATCCAGATATCAGCCACA+GGG | + | chr4.4:52054565-52054584 | MS.gene66848:CDS | 40.0% | |
TAGCTAGCATAGAGTAGCAT+AGG | + | chr4.4:52053342-52053361 | MS.gene66848:intron | 40.0% | |
TCACGACCAACAAATTGATG+TGG | + | chr4.4:52051319-52051338 | MS.gene66848:intron | 40.0% | |
TCCCTACAGACAAGACAATA+GGG | - | chr4.4:52054521-52054540 | None:intergenic | 40.0% | |
TCCCTATTGTCTTGTCTGTA+GGG | + | chr4.4:52054517-52054536 | MS.gene66848:intron | 40.0% | |
TCTGTAGGGAGGAAATTCAA+AGG | + | chr4.4:52054531-52054550 | MS.gene66848:intron | 40.0% | |
TGAGGTTAGAGGAAATGGAA+TGG | + | chr4.4:52051175-52051194 | MS.gene66848:intron | 40.0% | |
TGCACCTAGCAAACAAGATT+GGG | - | chr4.4:52054255-52054274 | None:intergenic | 40.0% | |
TGCATAAAATATGCAGGCCT+GGG | + | chr4.4:52052611-52052630 | MS.gene66848:intron | 40.0% | |
TGCATGCATGTGTTCTACTA+GGG | - | chr4.4:52053636-52053655 | None:intergenic | 40.0% | |
TGTATTGGGATAGTGTCTCT+TGG | - | chr4.4:52051606-52051625 | None:intergenic | 40.0% | |
TGTGATTGTTGTCATTCAGG+GGG | - | chr4.4:52053268-52053287 | None:intergenic | 40.0% | |
TTCCCTATTGTCTTGTCTGT+AGG | + | chr4.4:52054516-52054535 | MS.gene66848:intron | 40.0% | |
TTGCACCTAGCAAACAAGAT+TGG | - | chr4.4:52054256-52054275 | None:intergenic | 40.0% | |
! | CTTATTTGGTTCCCTCTTTG+AGG | + | chr4.4:52051157-52051176 | MS.gene66848:intron | 40.0% |
! | TTCACCCAATCTTGTTTGCT+AGG | + | chr4.4:52054248-52054267 | MS.gene66848:intron | 40.0% |
!! | CTCTTTGAGGTTAGAGGAAA+TGG | + | chr4.4:52051170-52051189 | MS.gene66848:intron | 40.0% |
AAACATACCTGAGGGAGTTG+AGG | - | chr4.4:52051128-52051147 | None:intergenic | 45.0% | |
ACGTAACGTCACAATCTTGG+AGG | - | chr4.4:52053571-52053590 | None:intergenic | 45.0% | |
ATCCAGTACCTTTCTGGACA+GGG | - | chr4.4:52052270-52052289 | None:intergenic | 45.0% | |
ATGAACCGGTTGTAAGCAGA+AGG | - | chr4.4:52054169-52054188 | None:intergenic | 45.0% | |
CATGTGTTCTACTAGGGCAT+AGG | - | chr4.4:52053630-52053649 | None:intergenic | 45.0% | |
CGTAACGTCACAATCTTGGA+GGG | - | chr4.4:52053570-52053589 | None:intergenic | 45.0% | |
CTATTGTCTTGTCTGTAGGG+AGG | + | chr4.4:52054520-52054539 | MS.gene66848:intron | 45.0% | |
CTCCCTACAGACAAGACAAT+AGG | - | chr4.4:52054522-52054541 | None:intergenic | 45.0% | |
GAAGCAAGCAGCAAGGAAAT+TGG | + | chr4.4:52053056-52053075 | MS.gene66848:CDS | 45.0% | |
GAAGTCACGGACAATGTCTT+AGG | - | chr4.4:52051482-52051501 | None:intergenic | 45.0% | |
GCAACTGCATGTATGGTAAG+TGG | - | chr4.4:52051376-52051395 | None:intergenic | 45.0% | |
GCATAAAATATGCAGGCCTG+GGG | + | chr4.4:52052612-52052631 | MS.gene66848:intron | 45.0% | |
GGAGGAAATGGCTGAAGTAA+TGG | - | chr4.4:52051104-52051123 | None:intergenic | 45.0% | |
GTAACGTCACAATCTTGGAG+GGG | - | chr4.4:52053569-52053588 | None:intergenic | 45.0% | |
GTAATCCAGATATCAGCCAC+AGG | + | chr4.4:52054564-52054583 | MS.gene66848:CDS | 45.0% | |
GTCTGCTCCCTCTTTGTATT+GGG | - | chr4.4:52051620-52051639 | None:intergenic | 45.0% | |
GTGATTGTTGTCATTCAGGG+GGG | - | chr4.4:52053267-52053286 | None:intergenic | 45.0% | |
GTGGCTGATATCTGGATTAC+TGG | - | chr4.4:52054564-52054583 | None:intergenic | 45.0% | |
GTGTTCCTTCTGCTTACAAC+CGG | + | chr4.4:52054161-52054180 | MS.gene66848:CDS | 45.0% | |
TAGTAGAGCACGAACATCCT+AGG | + | chr4.4:52053123-52053142 | MS.gene66848:CDS | 45.0% | |
TCATGAAGAAGCAAGCAGCA+AGG | + | chr4.4:52053049-52053068 | MS.gene66848:CDS | 45.0% | |
! | TGAGCTTAGCTCAGTTGGTA+TGG | + | chr4.4:52052547-52052566 | MS.gene66848:intron | 45.0% |
!! | AAAAATAAAACAAATAAAAA+AGG | + | chr4.4:52051348-52051367 | MS.gene66848:intron | 5.0% |
!! | ATATAAAAAAAAAAAGAAAA+AGG | - | chr4.4:52052297-52052316 | None:intergenic | 5.0% |
!! | TATTAAAAAAACATAAATTA+GGG | - | chr4.4:52052014-52052033 | None:intergenic | 5.0% |
!! | TTTGAATATTAAATTTATAT+TGG | - | chr4.4:52054094-52054113 | None:intergenic | 5.0% |
!!! | AAAATATTTTTATAAAAAAC+TGG | - | chr4.4:52052686-52052705 | None:intergenic | 5.0% |
AGAGTGTGACTCACGACGAA+TGG | - | chr4.4:52053156-52053175 | None:intergenic | 50.0% | |
CATCGTGAGCTTAGCTCAGT+TGG | + | chr4.4:52052579-52052598 | MS.gene66848:intron | 50.0% | |
CCAACTGAGCTAAGCTCACA+AGG | - | chr4.4:52052545-52052564 | None:intergenic | 50.0% | |
CCTTGTGAGCTTAGCTCAGT+TGG | + | chr4.4:52052542-52052561 | MS.gene66848:intron | 50.0% | |
GAGTGTGACTCACGACGAAT+GGG | - | chr4.4:52053155-52053174 | None:intergenic | 50.0% | |
GATCCAGTACCTTTCTGGAC+AGG | - | chr4.4:52052271-52052290 | None:intergenic | 50.0% | |
GGATCGATCCAGTACCTTTC+TGG | - | chr4.4:52052276-52052295 | None:intergenic | 50.0% | |
GGTCTGCTCCCTCTTTGTAT+TGG | - | chr4.4:52051621-52051640 | None:intergenic | 50.0% | |
TCTATGGTCCCTGTCCAGAA+AGG | + | chr4.4:52052259-52052278 | MS.gene66848:intron | 50.0% | |
!! | GGTTCCCTCTTTGAGGTTAG+AGG | + | chr4.4:52051164-52051183 | MS.gene66848:intron | 50.0% |
CATACCTGAGGGAGTTGAGG+AGG | - | chr4.4:52051125-52051144 | None:intergenic | 55.0% | |
CGACGAATGGGAGGAATCCT+AGG | - | chr4.4:52053143-52053162 | None:intergenic | 55.0% | |
GGGAGTTGAGGAGGAGGAAA+TGG | - | chr4.4:52051116-52051135 | None:intergenic | 55.0% | |
TCCAGATATCAGCCACAGGG+AGG | + | chr4.4:52054568-52054587 | MS.gene66848:CDS | 55.0% | |
TGTGACTCACGACGAATGGG+AGG | - | chr4.4:52053152-52053171 | None:intergenic | 55.0% | |
! | GTCCCTGTCCAGAAAGGTAC+TGG | + | chr4.4:52052265-52052284 | MS.gene66848:intron | 55.0% |
ACCTGAGGGAGTTGAGGAGG+AGG | - | chr4.4:52051122-52051141 | None:intergenic | 60.0% | |
CAGGGAGGCTTTCAGCTCAG+CGG | + | chr4.4:52054583-52054602 | MS.gene66848:CDS | 60.0% | |
CGTCACAATCTTGGAGGGGC+CGG | - | chr4.4:52053565-52053584 | None:intergenic | 60.0% | |
CTGAGCTGAAAGCCTCCCTG+TGG | - | chr4.4:52054583-52054602 | None:intergenic | 60.0% | |
GCCTCCCTGTGGCTGATATC+TGG | - | chr4.4:52054572-52054591 | None:intergenic | 60.0% | |
GTCACAATCTTGGAGGGGCC+GGG | - | chr4.4:52053564-52053583 | None:intergenic | 60.0% | |
TCCTCCTCCTCAACTCCCTC+AGG | + | chr4.4:52051118-52051137 | MS.gene66848:CDS | 60.0% | |
GTGGTCGGGGTTCGAACCCC+AGG | - | chr4.4:52052631-52052650 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 52051092 | 52054613 | 52051092 | ID=MS.gene66848 |
chr4.4 | mRNA | 52051092 | 52054613 | 52051092 | ID=MS.gene66848.t1;Parent=MS.gene66848 |
chr4.4 | exon | 52051092 | 52051139 | 52051092 | ID=MS.gene66848.t1.exon1;Parent=MS.gene66848.t1 |
chr4.4 | CDS | 52051092 | 52051139 | 52051092 | ID=cds.MS.gene66848.t1;Parent=MS.gene66848.t1 |
chr4.4 | exon | 52053029 | 52053161 | 52053029 | ID=MS.gene66848.t1.exon2;Parent=MS.gene66848.t1 |
chr4.4 | CDS | 52053029 | 52053161 | 52053029 | ID=cds.MS.gene66848.t1;Parent=MS.gene66848.t1 |
chr4.4 | exon | 52054143 | 52054191 | 52054143 | ID=MS.gene66848.t1.exon3;Parent=MS.gene66848.t1 |
chr4.4 | CDS | 52054143 | 52054191 | 52054143 | ID=cds.MS.gene66848.t1;Parent=MS.gene66848.t1 |
chr4.4 | exon | 52054538 | 52054613 | 52054538 | ID=MS.gene66848.t1.exon4;Parent=MS.gene66848.t1 |
chr4.4 | CDS | 52054538 | 52054613 | 52054538 | ID=cds.MS.gene66848.t1;Parent=MS.gene66848.t1 |
Gene Sequence |
Protein sequence |