AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene66848


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66848.t1 MTR_4g050300 96.078 102 1 1 1 102 51 149 3.83e-63 189
MS.gene66848.t1 MTR_2g087740 66.667 108 28 4 1 102 54 159 4.88e-33 113
MS.gene66848.t1 MTR_4g114730 67.143 70 22 1 34 102 84 153 1.55e-20 81.6
MS.gene66848.t1 MTR_4g025900 90.000 40 4 0 63 102 135 174 9.34e-19 77.8
MS.gene66848.t1 MTR_5g034030 48.864 88 39 2 21 102 70 157 2.04e-18 76.6
MS.gene66848.t1 MTR_4g101660 85.000 40 6 0 63 102 130 169 1.56e-17 74.3
MS.gene66848.t1 MTR_5g046230 72.549 51 12 1 54 102 101 151 1.95e-17 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66848.t1 AT1G08465 58.000 100 36 3 5 102 54 149 3.26e-27 98.6
MS.gene66848.t1 AT2G45190 72.727 66 16 2 39 102 49 114 2.04e-23 88.6
MS.gene66848.t1 AT2G45190 73.846 65 15 2 40 102 114 178 7.85e-23 88.6
MS.gene66848.t1 AT2G26580 66.667 72 23 1 31 102 72 142 4.76e-20 79.7
MS.gene66848.t1 AT2G26580 66.667 72 23 1 31 102 72 142 4.76e-20 79.7
MS.gene66848.t1 AT4G00180 92.500 40 3 0 63 102 120 159 2.97e-19 78.6
MS.gene66848.t1 AT4G00180 92.500 40 3 0 63 102 151 190 6.31e-19 78.6
MS.gene66848.t1 AT1G69180 68.182 44 14 0 59 102 109 152 5.35e-16 69.7
MS.gene66848.t1 AT1G23420 69.767 43 13 0 60 102 130 172 1.64e-13 63.9
MS.gene66848.t1 AT1G23420 69.767 43 13 0 60 102 161 203 2.77e-13 63.5

Find 27 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGCTGATATCTGGATTAC+TGG 0.287474 4.4:-52054561 None:intergenic
GCCTCCCTGTGGCTGATATC+TGG 0.289400 4.4:-52054569 None:intergenic
GAAGCAAGCAGCAAGGAAAT+TGG 0.345303 4.4:+52053056 MS.gene66848:CDS
GGAGGAAATTCAAAGGATTA+AGG 0.360502 4.4:+52054538 MS.gene66848:CDS
ATATAACTTACTTAATGAAC+CGG 0.422652 4.4:-52054180 None:intergenic
GGGAGTTGAGGAGGAGGAAA+TGG 0.440779 4.4:-52051113 None:intergenic
CGACGAATGGGAGGAATCCT+AGG 0.445790 4.4:-52053140 None:intergenic
GTGTTCCTTCTGCTTACAAC+CGG 0.449198 4.4:+52054161 MS.gene66848:CDS
TCCTCCTCCTCAACTCCCTC+AGG 0.474865 4.4:+52051118 MS.gene66848:CDS
CAACAAAATAGCATCATTTG+AGG 0.493091 4.4:+52053097 MS.gene66848:CDS
AGAGTGTGACTCACGACGAA+TGG 0.516345 4.4:-52053153 None:intergenic
TAGTAGAGCACGAACATCCT+AGG 0.516780 4.4:+52053123 MS.gene66848:CDS
GAGTGTGACTCACGACGAAT+GGG 0.531160 4.4:-52053152 None:intergenic
ACCTGAGGGAGTTGAGGAGG+AGG 0.539948 4.4:-52051119 None:intergenic
TGAATTATGTGCTGTTTCTG+TGG 0.544740 4.4:-52053029 None:intergenic
GGAGGAAATGGCTGAAGTAA+TGG 0.547935 4.4:-52051101 None:intergenic
AAACATACCTGAGGGAGTTG+AGG 0.577695 4.4:-52051125 None:intergenic
ATGAACCGGTTGTAAGCAGA+AGG 0.582569 4.4:-52054166 None:intergenic
GTAATCCAGATATCAGCCAC+AGG 0.588300 4.4:+52054564 MS.gene66848:CDS
TCTGTAGGGAGGAAATTCAA+AGG 0.621966 4.4:+52054531 MS.gene66848:intron
CTGAGCTGAAAGCCTCCCTG+TGG 0.623676 4.4:-52054580 None:intergenic
CAGGGAGGCTTTCAGCTCAG+CGG 0.634037 4.4:+52054583 MS.gene66848:CDS
CATACCTGAGGGAGTTGAGG+AGG 0.635233 4.4:-52051122 None:intergenic
TGTGACTCACGACGAATGGG+AGG 0.645995 4.4:-52053149 None:intergenic
TCATGAAGAAGCAAGCAGCA+AGG 0.659976 4.4:+52053049 MS.gene66848:CDS
TCCAGATATCAGCCACAGGG+AGG 0.683704 4.4:+52054568 MS.gene66848:CDS
TAATCCAGATATCAGCCACA+GGG 0.696359 4.4:+52054565 MS.gene66848:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAATATTATAAA+AGG - chr4.4:52051719-52051738 None:intergenic 0.0%
!!! TTATAATATTTTTTTTTTTT+AGG + chr4.4:52051720-52051739 MS.gene66848:intron 0.0%
!! AAAAGTAATTAATCAAAAAT+TGG - chr4.4:52052979-52052998 None:intergenic 10.0%
!! AATTATATAAATAGAAACAT+TGG - chr4.4:52054479-52054498 None:intergenic 10.0%
!! CTATTAAAAAAACATAAATT+AGG - chr4.4:52052015-52052034 None:intergenic 10.0%
!! GTTTCTATTTATATAATTAA+AGG + chr4.4:52054481-52054500 MS.gene66848:intron 10.0%
!! TAAAATAAATAAATTAGCTA+TGG + chr4.4:52051897-52051916 MS.gene66848:intron 10.0%
!!! AAAATAGTATTTTTTATTTG+TGG - chr4.4:52052653-52052672 None:intergenic 10.0%
!!! AATATTTTTTTTTTTTAGGA+TGG + chr4.4:52051724-52051743 MS.gene66848:intron 10.0%
!!! AATTTGTTACTTAAAAATAA+TGG - chr4.4:52053471-52053490 None:intergenic 10.0%
!!! ATATTTTTTTTTTTTAGGAT+GGG + chr4.4:52051725-52051744 MS.gene66848:intron 10.0%
!!! GATTAAAAACTTTTTTTAAA+AGG + chr4.4:52052329-52052348 MS.gene66848:intron 10.0%
!!! TTAATAGTAAAAATGATTTT+TGG + chr4.4:52052028-52052047 MS.gene66848:intron 10.0%
!! AATTAGCAATAGATTAATTA+AGG - chr4.4:52053004-52053023 None:intergenic 15.0%
!! ATTTAATAACAGATTTAGAA+AGG + chr4.4:52051957-52051976 MS.gene66848:intron 15.0%
!! ATTTATATAGACAAATTCTA+TGG + chr4.4:52052243-52052262 MS.gene66848:intron 15.0%
!!! AAATTAGTAAGTACATATTT+TGG - chr4.4:52051504-52051523 None:intergenic 15.0%
!!! ACACTTTCTTAATATATTTT+TGG + chr4.4:52054414-52054433 MS.gene66848:intron 15.0%
!!! AGCTAATTTATTTATTTTAG+TGG - chr4.4:52051896-52051915 None:intergenic 15.0%
!!! ATTTTTGGTAAAAACAAAAA+GGG + chr4.4:52052043-52052062 MS.gene66848:intron 15.0%
!!! CACTTTCTTAATATATTTTT+GGG + chr4.4:52054415-52054434 MS.gene66848:intron 15.0%
!!! TAATTTTTGTATTAGCTTTT+TGG + chr4.4:52053175-52053194 MS.gene66848:intron 15.0%
!!! TATACTGAAGTTTTATTTTT+TGG + chr4.4:52052172-52052191 MS.gene66848:intron 15.0%
!!! TATTTTTTTTTTTTAGGATG+GGG + chr4.4:52051726-52051745 MS.gene66848:intron 15.0%
!!! TGTTTTGTATATATTCATAT+AGG + chr4.4:52053497-52053516 MS.gene66848:intron 15.0%
!!! TTTTTCTTCATCAATTTATA+TGG + chr4.4:52053538-52053557 MS.gene66848:intron 15.0%
!! AATGACATAAAAGAGATATT+TGG - chr4.4:52052381-52052400 None:intergenic 20.0%
!! ATATAACTTACTTAATGAAC+CGG - chr4.4:52054183-52054202 None:intergenic 20.0%
!! CTAAATTTGAATAAACAAAG+TGG + chr4.4:52053226-52053245 MS.gene66848:intron 20.0%
!! GTATATAGTTGAACTTATTA+AGG + chr4.4:52051688-52051707 MS.gene66848:intron 20.0%
!! GTGTATTTAATACATTGAAA+AGG - chr4.4:52051543-52051562 None:intergenic 20.0%
!! TGACATTGTTATAATCTTAA+AGG - chr4.4:52051827-52051846 None:intergenic 20.0%
!! TGTTTCATATTCATCTTATT+TGG + chr4.4:52051143-52051162 MS.gene66848:intron 20.0%
!!! AAATAATACTTTTAGGAGTT+AGG + chr4.4:52052936-52052955 MS.gene66848:intron 20.0%
!!! ACACTCAAATACTATTTTTA+TGG + chr4.4:52052518-52052537 MS.gene66848:intron 20.0%
!!! ATAGAAACATTGGTAAATTT+TGG - chr4.4:52054469-52054488 None:intergenic 20.0%
!!! ATAGTATTTTTTATTTGTGG+TGG - chr4.4:52052650-52052669 None:intergenic 20.0%
!!! ATATTTATTTTTGAGAGTCA+TGG + chr4.4:52053677-52053696 MS.gene66848:intron 20.0%
!!! GATAGTGAAATAATACTTTT+AGG + chr4.4:52052929-52052948 MS.gene66848:intron 20.0%
!!! GATTTTTGGTAAAAACAAAA+AGG + chr4.4:52052042-52052061 MS.gene66848:intron 20.0%
!!! GCTTATATGTAATTTTTGTA+GGG - chr4.4:52054394-52054413 None:intergenic 20.0%
!!! TGCTTATATGTAATTTTTGT+AGG - chr4.4:52054395-52054414 None:intergenic 20.0%
!!! TTGCTTTTTATTTGAAGAAA+GGG + chr4.4:52054356-52054375 MS.gene66848:intron 20.0%
!!! TTTGCTTTTTATTTGAAGAA+AGG + chr4.4:52054355-52054374 MS.gene66848:intron 20.0%
!!! TTTTTTTAAAAGGAAAACGA+AGG + chr4.4:52052339-52052358 MS.gene66848:intron 20.0%
! AACTTCAGTATAATGTTTGA+AGG - chr4.4:52052164-52052183 None:intergenic 25.0%
! AAGAAAAAAAATTCCCAAAC+TGG - chr4.4:52053526-52053545 None:intergenic 25.0%
! AGAAAAAAAATTCCCAAACT+GGG - chr4.4:52053525-52053544 None:intergenic 25.0%
! CTTGAAGAAATGGTTAATTT+AGG - chr4.4:52053837-52053856 None:intergenic 25.0%
! GAGTCATGGTAATTAATTAT+TGG + chr4.4:52053691-52053710 MS.gene66848:intron 25.0%
! GGTAAATAGTATATACACAT+TGG - chr4.4:52052835-52052854 None:intergenic 25.0%
! TAAGTTCAACTATATACACT+AGG - chr4.4:52051685-52051704 None:intergenic 25.0%
! TGATGCTTAATTTATTGAGT+CGG + chr4.4:52053442-52053461 MS.gene66848:intron 25.0%
! TGGTAATTAATTATTGGCAT+TGG + chr4.4:52053697-52053716 MS.gene66848:intron 25.0%
! TGGTAATTGTAAACTATTAC+TGG + chr4.4:52053717-52053736 MS.gene66848:intron 25.0%
! TGTTATAATCTTAAAGGAGA+AGG - chr4.4:52051821-52051840 None:intergenic 25.0%
! TTTGACAAACTAGTAGATTA+AGG - chr4.4:52053960-52053979 None:intergenic 25.0%
!! ATTTTATGTGTAAGAACCAA+TGG + chr4.4:52052075-52052094 MS.gene66848:intron 25.0%
!! CTTTCTCATTTTCTCATTAT+AGG + chr4.4:52051934-52051953 MS.gene66848:intron 25.0%
!! TACTAGTTTGTCAAAAAATG+AGG + chr4.4:52053965-52053984 MS.gene66848:intron 25.0%
!!! ATGGTTAATTTAGGTTTTCT+TGG - chr4.4:52053828-52053847 None:intergenic 25.0%
!!! TACTATTTACCACTTTTGTT+AGG + chr4.4:52052844-52052863 MS.gene66848:intron 25.0%
!!! TATTTATTTTAGTGGTGTGT+TGG - chr4.4:52051888-52051907 None:intergenic 25.0%
!!! TATTTTTTATTTGTGGTGGT+CGG - chr4.4:52052646-52052665 None:intergenic 25.0%
ACATGCAGTTGCTATAATAA+AGG + chr4.4:52051384-52051403 MS.gene66848:intron 30.0%
ATCTTCAAGAATTATCACGA+AGG - chr4.4:52051417-52051436 None:intergenic 30.0%
ATGAATATGAAACATACCTG+AGG - chr4.4:52051137-52051156 None:intergenic 30.0%
ATTTGTCTTGCTTGAAGAAA+TGG - chr4.4:52053847-52053866 None:intergenic 30.0%
CAACAAAATAGCATCATTTG+AGG + chr4.4:52053097-52053116 MS.gene66848:CDS 30.0%
CAATGTCAAAAAAGCTTCTA+AGG - chr4.4:52052810-52052829 None:intergenic 30.0%
GGATAATGCATAAAATATGC+AGG + chr4.4:52052605-52052624 MS.gene66848:intron 30.0%
GTCTATATAAATTAGAGCAC+AGG - chr4.4:52052235-52052254 None:intergenic 30.0%
TACCTAAAGAAACAAACCAT+TGG - chr4.4:52052094-52052113 None:intergenic 30.0%
TATATAAATTAGAGCACAGG+TGG - chr4.4:52052232-52052251 None:intergenic 30.0%
TATTATAGCAACTGCATGTA+TGG - chr4.4:52051383-52051402 None:intergenic 30.0%
TCTTCAAGCAAGACAAATAA+AGG + chr4.4:52053849-52053868 MS.gene66848:intron 30.0%
TGAATATGAAACATACCTGA+GGG - chr4.4:52051136-52051155 None:intergenic 30.0%
TTAGGGAGAGAAATTTAGAA+CGG - chr4.4:52051997-52052016 None:intergenic 30.0%
TTGATACCACATCAATTTGT+TGG - chr4.4:52051328-52051347 None:intergenic 30.0%
TTGGACTTTAATTCAATGAG+AGG - chr4.4:52051869-52051888 None:intergenic 30.0%
TTTGTCATGTTCATGTAACA+TGG - chr4.4:52051642-52051661 None:intergenic 30.0%
!! AACCAATGGTTTGTTTCTTT+AGG + chr4.4:52052089-52052108 MS.gene66848:intron 30.0%
!! AGTACATATTTTGGAAGTCA+CGG - chr4.4:52051495-52051514 None:intergenic 30.0%
!!! ATTTTTTATTTGTGGTGGTC+GGG - chr4.4:52052645-52052664 None:intergenic 30.0%
!!! TTTTTTTTTAGGATGGGGAA+GGG + chr4.4:52051731-52051750 MS.gene66848:intron 30.0%
!!! TTTTTTTTTTAGGATGGGGA+AGG + chr4.4:52051730-52051749 MS.gene66848:intron 30.0%
AAGTGAAGTGACATGAACAA+TGG + chr4.4:52053774-52053793 MS.gene66848:intron 35.0%
ACACTATCCCAATACAAAGA+GGG + chr4.4:52051610-52051629 MS.gene66848:intron 35.0%
AGGATGACAGCAATGAATTA+AGG - chr4.4:52053610-52053629 None:intergenic 35.0%
ATGTGTGATTGTTGTCATTC+AGG - chr4.4:52053271-52053290 None:intergenic 35.0%
ATTCATATAGGTTCCCAGTT+TGG + chr4.4:52053509-52053528 MS.gene66848:intron 35.0%
ATTTCCTCTAACCTCAAAGA+GGG - chr4.4:52051171-52051190 None:intergenic 35.0%
CAAGACAAATAAAGGACTCT+GGG + chr4.4:52053857-52053876 MS.gene66848:intron 35.0%
CTTCATCAATTTATATGGCC+CGG + chr4.4:52053543-52053562 MS.gene66848:intron 35.0%
GACAGCAATGAATTAAGGAT+GGG - chr4.4:52053605-52053624 None:intergenic 35.0%
GGAGAAGGTTCAAATATTCA+AGG - chr4.4:52051806-52051825 None:intergenic 35.0%
GGAGGAAATTCAAAGGATTA+AGG + chr4.4:52054538-52054557 MS.gene66848:CDS 35.0%
TGACAGCAATGAATTAAGGA+TGG - chr4.4:52053606-52053625 None:intergenic 35.0%
TGTGAACTCATCTATGTTTG+CGG - chr4.4:52051579-52051598 None:intergenic 35.0%
TGTGTGATTGTTGTCATTCA+GGG - chr4.4:52053270-52053289 None:intergenic 35.0%
TTAGGACACTCATTAGCAAA+AGG - chr4.4:52051464-52051483 None:intergenic 35.0%
TTCATATAGGTTCCCAGTTT+GGG + chr4.4:52053510-52053529 MS.gene66848:intron 35.0%
! ATGTCTTTTCTCTATAGCTG+TGG - chr4.4:52054140-52054159 None:intergenic 35.0%
! TCTATGTTTGCGGAGATTTT+AGG - chr4.4:52051569-52051588 None:intergenic 35.0%
!! AAAGGACTCTGGGATAAAAT+TGG + chr4.4:52053867-52053886 MS.gene66848:intron 35.0%
!! ACTTTTAGGAGTTAGGACTT+GGG + chr4.4:52052943-52052962 MS.gene66848:intron 35.0%
!! TACTTTTAGGAGTTAGGACT+TGG + chr4.4:52052942-52052961 MS.gene66848:intron 35.0%
!! TCAACACTACTATTTTCGAG+AGG + chr4.4:52054301-52054320 MS.gene66848:intron 35.0%
!! TGAATTATGTGCTGTTTCTG+TGG - chr4.4:52053032-52053051 None:intergenic 35.0%
!!! TTTTTTATTTGTGGTGGTCG+GGG - chr4.4:52052644-52052663 None:intergenic 35.0%
!!! TTTTTTTTAGGATGGGGAAG+GGG + chr4.4:52051732-52051751 MS.gene66848:intron 35.0%
AACTGCATGTATGGTAAGTG+GGG - chr4.4:52051374-52051393 None:intergenic 40.0%
AGCAAACTCCGATCAATAAC+TGG - chr4.4:52053747-52053766 None:intergenic 40.0%
ATGCATAAAATATGCAGGCC+TGG + chr4.4:52052610-52052629 MS.gene66848:intron 40.0%
ATGCATGCATGTGTTCTACT+AGG - chr4.4:52053637-52053656 None:intergenic 40.0%
CAAAGTGGCAACTACTAACT+AGG + chr4.4:52053241-52053260 MS.gene66848:intron 40.0%
CAACTGCATGTATGGTAAGT+GGG - chr4.4:52051375-52051394 None:intergenic 40.0%
CATCACTCTCCTAACAAAAG+TGG - chr4.4:52052856-52052875 None:intergenic 40.0%
CATTTCCTCTAACCTCAAAG+AGG - chr4.4:52051172-52051191 None:intergenic 40.0%
CTGGTACTCCAGTTATTGAT+CGG + chr4.4:52053736-52053755 MS.gene66848:intron 40.0%
GACACTATCCCAATACAAAG+AGG + chr4.4:52051609-52051628 MS.gene66848:intron 40.0%
GCAAGACAAATAAAGGACTC+TGG + chr4.4:52053856-52053875 MS.gene66848:intron 40.0%
GTGTGATTGTTGTCATTCAG+GGG - chr4.4:52053269-52053288 None:intergenic 40.0%
GTTACGTAACGTCACAATCT+TGG - chr4.4:52053574-52053593 None:intergenic 40.0%
TAATCCAGATATCAGCCACA+GGG + chr4.4:52054565-52054584 MS.gene66848:CDS 40.0%
TAGCTAGCATAGAGTAGCAT+AGG + chr4.4:52053342-52053361 MS.gene66848:intron 40.0%
TCACGACCAACAAATTGATG+TGG + chr4.4:52051319-52051338 MS.gene66848:intron 40.0%
TCCCTACAGACAAGACAATA+GGG - chr4.4:52054521-52054540 None:intergenic 40.0%
TCCCTATTGTCTTGTCTGTA+GGG + chr4.4:52054517-52054536 MS.gene66848:intron 40.0%
TCTGTAGGGAGGAAATTCAA+AGG + chr4.4:52054531-52054550 MS.gene66848:intron 40.0%
TGAGGTTAGAGGAAATGGAA+TGG + chr4.4:52051175-52051194 MS.gene66848:intron 40.0%
TGCACCTAGCAAACAAGATT+GGG - chr4.4:52054255-52054274 None:intergenic 40.0%
TGCATAAAATATGCAGGCCT+GGG + chr4.4:52052611-52052630 MS.gene66848:intron 40.0%
TGCATGCATGTGTTCTACTA+GGG - chr4.4:52053636-52053655 None:intergenic 40.0%
TGTATTGGGATAGTGTCTCT+TGG - chr4.4:52051606-52051625 None:intergenic 40.0%
TGTGATTGTTGTCATTCAGG+GGG - chr4.4:52053268-52053287 None:intergenic 40.0%
TTCCCTATTGTCTTGTCTGT+AGG + chr4.4:52054516-52054535 MS.gene66848:intron 40.0%
TTGCACCTAGCAAACAAGAT+TGG - chr4.4:52054256-52054275 None:intergenic 40.0%
! CTTATTTGGTTCCCTCTTTG+AGG + chr4.4:52051157-52051176 MS.gene66848:intron 40.0%
! TTCACCCAATCTTGTTTGCT+AGG + chr4.4:52054248-52054267 MS.gene66848:intron 40.0%
!! CTCTTTGAGGTTAGAGGAAA+TGG + chr4.4:52051170-52051189 MS.gene66848:intron 40.0%
AAACATACCTGAGGGAGTTG+AGG - chr4.4:52051128-52051147 None:intergenic 45.0%
ACGTAACGTCACAATCTTGG+AGG - chr4.4:52053571-52053590 None:intergenic 45.0%
ATCCAGTACCTTTCTGGACA+GGG - chr4.4:52052270-52052289 None:intergenic 45.0%
ATGAACCGGTTGTAAGCAGA+AGG - chr4.4:52054169-52054188 None:intergenic 45.0%
CATGTGTTCTACTAGGGCAT+AGG - chr4.4:52053630-52053649 None:intergenic 45.0%
CGTAACGTCACAATCTTGGA+GGG - chr4.4:52053570-52053589 None:intergenic 45.0%
CTATTGTCTTGTCTGTAGGG+AGG + chr4.4:52054520-52054539 MS.gene66848:intron 45.0%
CTCCCTACAGACAAGACAAT+AGG - chr4.4:52054522-52054541 None:intergenic 45.0%
GAAGCAAGCAGCAAGGAAAT+TGG + chr4.4:52053056-52053075 MS.gene66848:CDS 45.0%
GAAGTCACGGACAATGTCTT+AGG - chr4.4:52051482-52051501 None:intergenic 45.0%
GCAACTGCATGTATGGTAAG+TGG - chr4.4:52051376-52051395 None:intergenic 45.0%
GCATAAAATATGCAGGCCTG+GGG + chr4.4:52052612-52052631 MS.gene66848:intron 45.0%
GGAGGAAATGGCTGAAGTAA+TGG - chr4.4:52051104-52051123 None:intergenic 45.0%
GTAACGTCACAATCTTGGAG+GGG - chr4.4:52053569-52053588 None:intergenic 45.0%
GTAATCCAGATATCAGCCAC+AGG + chr4.4:52054564-52054583 MS.gene66848:CDS 45.0%
GTCTGCTCCCTCTTTGTATT+GGG - chr4.4:52051620-52051639 None:intergenic 45.0%
GTGATTGTTGTCATTCAGGG+GGG - chr4.4:52053267-52053286 None:intergenic 45.0%
GTGGCTGATATCTGGATTAC+TGG - chr4.4:52054564-52054583 None:intergenic 45.0%
GTGTTCCTTCTGCTTACAAC+CGG + chr4.4:52054161-52054180 MS.gene66848:CDS 45.0%
TAGTAGAGCACGAACATCCT+AGG + chr4.4:52053123-52053142 MS.gene66848:CDS 45.0%
TCATGAAGAAGCAAGCAGCA+AGG + chr4.4:52053049-52053068 MS.gene66848:CDS 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + chr4.4:52052547-52052566 MS.gene66848:intron 45.0%
!! AAAAATAAAACAAATAAAAA+AGG + chr4.4:52051348-52051367 MS.gene66848:intron 5.0%
!! ATATAAAAAAAAAAAGAAAA+AGG - chr4.4:52052297-52052316 None:intergenic 5.0%
!! TATTAAAAAAACATAAATTA+GGG - chr4.4:52052014-52052033 None:intergenic 5.0%
!! TTTGAATATTAAATTTATAT+TGG - chr4.4:52054094-52054113 None:intergenic 5.0%
!!! AAAATATTTTTATAAAAAAC+TGG - chr4.4:52052686-52052705 None:intergenic 5.0%
AGAGTGTGACTCACGACGAA+TGG - chr4.4:52053156-52053175 None:intergenic 50.0%
CATCGTGAGCTTAGCTCAGT+TGG + chr4.4:52052579-52052598 MS.gene66848:intron 50.0%
CCAACTGAGCTAAGCTCACA+AGG - chr4.4:52052545-52052564 None:intergenic 50.0%
CCTTGTGAGCTTAGCTCAGT+TGG + chr4.4:52052542-52052561 MS.gene66848:intron 50.0%
GAGTGTGACTCACGACGAAT+GGG - chr4.4:52053155-52053174 None:intergenic 50.0%
GATCCAGTACCTTTCTGGAC+AGG - chr4.4:52052271-52052290 None:intergenic 50.0%
GGATCGATCCAGTACCTTTC+TGG - chr4.4:52052276-52052295 None:intergenic 50.0%
GGTCTGCTCCCTCTTTGTAT+TGG - chr4.4:52051621-52051640 None:intergenic 50.0%
TCTATGGTCCCTGTCCAGAA+AGG + chr4.4:52052259-52052278 MS.gene66848:intron 50.0%
!! GGTTCCCTCTTTGAGGTTAG+AGG + chr4.4:52051164-52051183 MS.gene66848:intron 50.0%
CATACCTGAGGGAGTTGAGG+AGG - chr4.4:52051125-52051144 None:intergenic 55.0%
CGACGAATGGGAGGAATCCT+AGG - chr4.4:52053143-52053162 None:intergenic 55.0%
GGGAGTTGAGGAGGAGGAAA+TGG - chr4.4:52051116-52051135 None:intergenic 55.0%
TCCAGATATCAGCCACAGGG+AGG + chr4.4:52054568-52054587 MS.gene66848:CDS 55.0%
TGTGACTCACGACGAATGGG+AGG - chr4.4:52053152-52053171 None:intergenic 55.0%
! GTCCCTGTCCAGAAAGGTAC+TGG + chr4.4:52052265-52052284 MS.gene66848:intron 55.0%
ACCTGAGGGAGTTGAGGAGG+AGG - chr4.4:52051122-52051141 None:intergenic 60.0%
CAGGGAGGCTTTCAGCTCAG+CGG + chr4.4:52054583-52054602 MS.gene66848:CDS 60.0%
CGTCACAATCTTGGAGGGGC+CGG - chr4.4:52053565-52053584 None:intergenic 60.0%
CTGAGCTGAAAGCCTCCCTG+TGG - chr4.4:52054583-52054602 None:intergenic 60.0%
GCCTCCCTGTGGCTGATATC+TGG - chr4.4:52054572-52054591 None:intergenic 60.0%
GTCACAATCTTGGAGGGGCC+GGG - chr4.4:52053564-52053583 None:intergenic 60.0%
TCCTCCTCCTCAACTCCCTC+AGG + chr4.4:52051118-52051137 MS.gene66848:CDS 60.0%
GTGGTCGGGGTTCGAACCCC+AGG - chr4.4:52052631-52052650 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 52051092 52054613 52051092 ID=MS.gene66848
chr4.4 mRNA 52051092 52054613 52051092 ID=MS.gene66848.t1;Parent=MS.gene66848
chr4.4 exon 52051092 52051139 52051092 ID=MS.gene66848.t1.exon1;Parent=MS.gene66848.t1
chr4.4 CDS 52051092 52051139 52051092 ID=cds.MS.gene66848.t1;Parent=MS.gene66848.t1
chr4.4 exon 52053029 52053161 52053029 ID=MS.gene66848.t1.exon2;Parent=MS.gene66848.t1
chr4.4 CDS 52053029 52053161 52053029 ID=cds.MS.gene66848.t1;Parent=MS.gene66848.t1
chr4.4 exon 52054143 52054191 52054143 ID=MS.gene66848.t1.exon3;Parent=MS.gene66848.t1
chr4.4 CDS 52054143 52054191 52054143 ID=cds.MS.gene66848.t1;Parent=MS.gene66848.t1
chr4.4 exon 52054538 52054613 52054538 ID=MS.gene66848.t1.exon4;Parent=MS.gene66848.t1
chr4.4 CDS 52054538 52054613 52054538 ID=cds.MS.gene66848.t1;Parent=MS.gene66848.t1
Gene Sequence

>MS.gene66848

ATGGTGGCACCATTACTTCAGCCATTTCCTCCTCCTCAACTCCCTCAGGTATGTTTCATATTCATCTTATTTGGTTCCCTCTTTGAGGTTAGAGGAAATGGAATGGTTTTTCATTTTCAAGTTTTTTCTAATCTTATTGTTTTTTTTTTTCTTTCTAAAAATAATCATGTAGAAGATATTTTGTTAACAACAGTGCTATATATCGCGAGAAAACTCTCACGATTGTTTCACGACCAACAAATTGATGTGGTATCAAAAAAATAAAACAAATAAAAAAGGCCCCACTTACCATACATGCAGTTGCTATAATAAAGGAGTTAAGCCTTCGTGATAATTCTTGAAGATTTTTGTCGCTGTAAACAACATTTTCCTTTTGCTAATGAGTGTCCTAAGACATTGTCCGTGACTTCCAAAATATGTACTTACTAATTTAAAATTTTACTATATTCCTTTTCAATGTATTAAATACACATTCCTAAAATCTCCGCAAACATAGATGAGTTCACAAAGACCAAGAGACACTATCCCAATACAAAGAGGGAGCAGACCATGTTACATGAACATGACAAAATAAGTTGAACTAACTACTGCCTAGTGTATATAGTTGAACTTATTAAGGTTCAACCTTTTATAATATTTTTTTTTTTTAGGATGGGGAAGGGGAAATTTAATTATAAAGTGAGATCAATGATCATTTCATAATATAGCTTTCCTTGAATATTTGAACCTTCTCCTTTAAGATTATAACAATGTCAACTATTACAATTGAACTAACCTCTCATTGAATTAAAGTCCAACACACCACTAAAATAAATAAATTAGCTATGGAAAATATAAAATCTCTTTCTCATTTTCTCATTATAGGATTTAATAACAGATTTAGAAAGGAATTTTACGTTTTTCCGTTCTAAATTTCTCTCCCTAATTTATGTTTTTTTAATAGTAAAAATGATTTTTGGTAAAAACAAAAAGGGTCATTGTTTATTTTATGTGTAAGAACCAATGGTTTGTTTCTTTAGGTAATCACTTTTTGTAGATTTTAGTGCTTCAATAATTGTCTGTGCTAGCTCCTTCAAACATTATACTGAAGTTTTATTTTTTGGCGACATTATAGTGAATGATTTTTGAGTTTGAGTACCACCTGTGCTCTAATTTATATAGACAAATTCTATGGTCCCTGTCCAGAAAGGTACTGGATCGATCCTTTTTCTTTTTTTTTTTATATAAAATAATAGAAGATTAAAAACTTTTTTTAAAAGGAAAACGAAGGATAGATTACAATAATACCAAATATCTCTTTTATGTCATTTGAAATCAATTTAAAATATATATTTTTTTAGATTTTTTTTCAATATTGTAACTAAATACTTAATAATTAAGCAGAAATTATAATCATAAAAAATAAATAGATTAAAAATTGTATTTAACACTCAAATACTATTTTTATGGTCCTTGTGAGCTTAGCTCAGTTGGTATGGACAATGCATCATCGTGAGCTTAGCTCAGTTGGTATGGATAATGCATAAAATATGCAGGCCTGGGGTTCGAACCCCGACCACCACAAATAAAAAATACTATTTTTACAAATATTCCAGTTTTTTATAAAAATATTTTGACAAAGTAAAATTATTTTTAGTAATTAATTTTAGTCAAAAAGAAATAAAAATATTTATATTTCACTAAATGACACAATTAAATAAAAATGATGCACATGACCTTAGAAGCTTTTTTGACATTGAACCAATGTGTATATACTATTTACCACTTTTGTTAGGAGAGTGATGTCTATATACTCAATCAAACACAAGAATACTAGAGTGATCTCTTTACTTTTTTAGATAGTGAAATAATACTTTTAGGAGTTAGGACTTGGGACACTTATTACCAATTTTTGATTAATTACTTTTCTCCTTAATTAATCTATTGCTAATTGTAAGCCACAGAAACAGCACATAATTCATGAAGAAGCAAGCAGCAAGGAAATTGGATCATCATCTTCAAAATGCAACAAAATAGCATCATTTGAGGCAGTAGTAGAGCACGAACATCCTAGGATTCCTCCCATTCGTCGTGAGTCACACTCTAATTTTTGTATTAGCTTTTTGGTATCAAAAGTTCAACTTTGTACTATGCTCTAAATTTGAATAAACAAAGTGGCAACTACTAACTAGGCCCCCCTGAATGACAACAATCACACATTCACATATTAACTAGCTAGCATAAAATTCTTAAAAAAAAATAAAAAAAAACTAGCTAGCATAGAGTAGCATAGGTTAGTTAAATTAATTAATCAATGTAAGTAATAGCATAACATAGCTAGCATAGCACACACTCTTGTCATGAAAATATTTGATGCTTAATTTATTGAGTCGGTGTCCATTATTTTTAAGTAACAAATTTGAATTTGTTTTGTATATATTCATATAGGTTCCCAGTTTGGGAATTTTTTTTCTTCATCAATTTATATGGCCCGGCCCCTCCAAGATTGTGACGTTACGTAACGAAATTGACCCATCCTTAATTCATTGCTGTCATCCTATGCCCTAGTAGAACACATGCATGCATATATATAATATATAAATTATATATTTATTTTTGAGAGTCATGGTAATTAATTATTGGCATTGGTAATTGTAAACTATTACTGGTACTCCAGTTATTGATCGGAGTTTGCTGCTGATGAAGTGAAGTGACATGAACAATGGCGACAAAAACGTTTTAGAAATAAAATAACCAAGAAAACCTAAATTAACCATTTCTTCAAGCAAGACAAATAAAGGACTCTGGGATAAAATTGGAGCTTCAATAATATGAGAAATGCATATAATATAATATAATATAATATAATATAATATAATAAATGATCCTTAATCTACTAGTTTGTCAAAAAATGAGGCATGTTCTTGTGAAAAACTGATTGATCAATTAATGTATATGATGAAATTAAATTTTTTTCTCACTCAAAAAGAAAAAAATTGTTGATTGTATTATGTTACATTCCAATATAAATTTAATATTCAAAACTAATTGATCTCATGATTATTACCACAGCTATAGAGAAAAGACATCGTGTTCCTTCTGCTTACAACCGGTTCATTAAGTAAGTTATATTTCTGAGTATTTACAATTACAATTTCAAATCAGTTCATGCTTAGCTTCACCCAATCTTGTTTGCTAGGTGCAAGATTAGACTTATGATAACTGAAATATCAACACTACTATTTTCGAGAGGAGTTTAGTACTATATATTATCATTATTATATTTTGCTTTTTATTTGAAGAAAGGGTGATAATGATTACCCTACAAAAATTACATATAAGCACACTTTCTTAATATATTTTTGGGATATGATATATATGACTTAAAAACATAACCAAAATTTACCAATGTTTCTATTTATATAATTAAAGGAAATAAGAAACTTTCCCTATTGTCTTGTCTGTAGGGAGGAAATTCAAAGGATTAAGGCCAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCGGCAAAAAAT

Protein sequence

>MS.gene66848.t1

MVAPLLQPFPPPQLPQPQKQHIIHEEASSKEIGSSSSKCNKIASFEAVVEHEHPRIPPIRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKN