Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067588.t1 | XP_024636830.1 | 95 | 179 | 9 | 0 | 1 | 179 | 1 | 179 | 1.10E-89 | 339.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067588.t1 | A0A396IBA2 | 95.0 | 179 | 9 | 0 | 1 | 179 | 1 | 179 | 7.6e-90 | 339.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene067588 | 0.844475 | 7.39E-59 | -1.69E-46 |
| MS.gene049217 | MS.gene067588 | 0.809687 | 1.67E-50 | -1.69E-46 |
| MS.gene049222 | MS.gene067588 | 0.815222 | 1.03E-51 | -1.69E-46 |
| MS.gene049285 | MS.gene067588 | 0.805528 | 1.28E-49 | -1.69E-46 |
| MS.gene049351 | MS.gene067588 | 0.812684 | 3.75E-51 | -1.69E-46 |
| MS.gene049427 | MS.gene067588 | 0.896254 | 4.40E-76 | -1.69E-46 |
| MS.gene049614 | MS.gene067588 | 0.807141 | 5.84E-50 | -1.69E-46 |
| MS.gene049627 | MS.gene067588 | 0.807045 | 6.12E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene067588 | 0.804208 | 2.41E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene067588 | 0.83602 | 1.19E-56 | -1.69E-46 |
| MS.gene050165 | MS.gene067588 | 0.801101 | 1.06E-48 | -1.69E-46 |
| MS.gene050301 | MS.gene067588 | 0.806582 | 7.67E-50 | -1.69E-46 |
| MS.gene050507 | MS.gene067588 | 0.808869 | 2.51E-50 | -1.69E-46 |
| MS.gene050538 | MS.gene067588 | 0.823724 | 1.19E-53 | -1.69E-46 |
| MS.gene050747 | MS.gene067588 | 0.841017 | 6.13E-58 | -1.69E-46 |
| MS.gene050767 | MS.gene067588 | 0.802129 | 6.50E-49 | -1.69E-46 |
| MS.gene050770 | MS.gene067588 | 0.80374 | 3.02E-49 | -1.69E-46 |
| MS.gene050781 | MS.gene067588 | 0.854512 | 1.17E-61 | -1.69E-46 |
| MS.gene050783 | MS.gene067588 | 0.880871 | 3.84E-70 | -1.69E-46 |
| MS.gene050812 | MS.gene067588 | 0.891368 | 4.23E-74 | -1.69E-46 |
| MS.gene050950 | MS.gene067588 | 0.838994 | 2.07E-57 | -1.69E-46 |
| MS.gene05100 | MS.gene067588 | 0.835397 | 1.72E-56 | -1.69E-46 |
| MS.gene05101 | MS.gene067588 | 0.813764 | 2.17E-51 | -1.69E-46 |
| MS.gene051387 | MS.gene067588 | 0.852226 | 5.30E-61 | -1.69E-46 |
| MS.gene051582 | MS.gene067588 | 0.816109 | 6.55E-52 | -1.69E-46 |
| MS.gene051666 | MS.gene067588 | 0.844402 | 7.73E-59 | -1.69E-46 |
| MS.gene051694 | MS.gene067588 | 0.821847 | 3.25E-53 | -1.69E-46 |
| MS.gene052310 | MS.gene067588 | 0.813951 | 1.97E-51 | -1.69E-46 |
| MS.gene052326 | MS.gene067588 | 0.826292 | 2.94E-54 | -1.69E-46 |
| MS.gene052379 | MS.gene067588 | 0.814203 | 1.74E-51 | -1.69E-46 |
| MS.gene052421 | MS.gene067588 | 0.814423 | 1.55E-51 | -1.69E-46 |
| MS.gene052481 | MS.gene067588 | 0.802831 | 4.65E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene067588 | 0.812739 | 3.64E-51 | -1.69E-46 |
| MS.gene053107 | MS.gene067588 | 0.873507 | 1.39E-67 | -1.69E-46 |
| MS.gene053207 | MS.gene067588 | 0.800941 | 1.14E-48 | -1.69E-46 |
| MS.gene053213 | MS.gene067588 | 0.819217 | 1.30E-52 | -1.69E-46 |
| MS.gene053286 | MS.gene067588 | 0.813062 | 3.10E-51 | -1.69E-46 |
| MS.gene053322 | MS.gene067588 | 0.852166 | 5.52E-61 | -1.69E-46 |
| MS.gene053579 | MS.gene067588 | 0.824557 | 7.57E-54 | -1.69E-46 |
| MS.gene053632 | MS.gene067588 | 0.806398 | 8.39E-50 | -1.69E-46 |
| MS.gene054123 | MS.gene067588 | 0.819922 | 9.01E-53 | -1.69E-46 |
| MS.gene054408 | MS.gene067588 | 0.829336 | 5.45E-55 | -1.69E-46 |
| MS.gene05455 | MS.gene067588 | 0.811145 | 8.11E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene067588 | 0.805879 | 1.08E-49 | -1.69E-46 |
| MS.gene054802 | MS.gene067588 | 0.835542 | 1.58E-56 | -1.69E-46 |
| MS.gene054803 | MS.gene067588 | 0.834172 | 3.50E-56 | -1.69E-46 |
| MS.gene054804 | MS.gene067588 | 0.837405 | 5.30E-57 | -1.69E-46 |
| MS.gene055397 | MS.gene067588 | 0.835283 | 1.84E-56 | -1.69E-46 |
| MS.gene055412 | MS.gene067588 | 0.855004 | 8.44E-62 | -1.69E-46 |
| MS.gene055499 | MS.gene067588 | 0.829942 | 3.88E-55 | -1.69E-46 |
| MS.gene055647 | MS.gene067588 | 0.81968 | 1.02E-52 | -1.69E-46 |
| MS.gene056083 | MS.gene067588 | 0.806542 | 7.82E-50 | -1.69E-46 |
| MS.gene056374 | MS.gene067588 | 0.806241 | 9.05E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene067588 | 0.805041 | 1.62E-49 | -1.69E-46 |
| MS.gene056452 | MS.gene067588 | 0.812233 | 4.70E-51 | -1.69E-46 |
| MS.gene056796 | MS.gene067588 | 0.822523 | 2.26E-53 | -1.69E-46 |
| MS.gene056897 | MS.gene067588 | 0.80224 | 6.16E-49 | -1.69E-46 |
| MS.gene057011 | MS.gene067588 | 0.890466 | 9.61E-74 | -1.69E-46 |
| MS.gene057129 | MS.gene067588 | 0.82142 | 4.08E-53 | -1.69E-46 |
| MS.gene057146 | MS.gene067588 | 0.840464 | 8.56E-58 | -1.69E-46 |
| MS.gene057416 | MS.gene067588 | 0.830452 | 2.91E-55 | -1.69E-46 |
| MS.gene057658 | MS.gene067588 | 0.801337 | 9.44E-49 | -1.69E-46 |
| MS.gene057831 | MS.gene067588 | 0.820922 | 5.31E-53 | -1.69E-46 |
| MS.gene058019 | MS.gene067588 | 0.833808 | 4.31E-56 | -1.69E-46 |
| MS.gene058233 | MS.gene067588 | 0.813203 | 2.88E-51 | -1.69E-46 |
| MS.gene058293 | MS.gene067588 | 0.841963 | 3.45E-58 | -1.69E-46 |
| MS.gene058323 | MS.gene067588 | 0.806761 | 7.03E-50 | -1.69E-46 |
| MS.gene058544 | MS.gene067588 | 0.816492 | 5.38E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene067588 | 0.861821 | 7.83E-64 | -1.69E-46 |
| MS.gene05883 | MS.gene067588 | 0.840153 | 1.03E-57 | -1.69E-46 |
| MS.gene058993 | MS.gene067588 | 0.807134 | 5.86E-50 | -1.69E-46 |
| MS.gene059141 | MS.gene067588 | 0.804362 | 2.24E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene067588 | 0.831018 | 2.12E-55 | -1.69E-46 |
| MS.gene059536 | MS.gene067588 | 0.848492 | 5.92E-60 | -1.69E-46 |
| MS.gene059676 | MS.gene067588 | 0.813584 | 2.38E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene067588 | 0.812446 | 4.22E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene067588 | 0.803962 | 2.71E-49 | -1.69E-46 |
| MS.gene059695 | MS.gene067588 | 0.813615 | 2.34E-51 | -1.69E-46 |
| MS.gene059718 | MS.gene067588 | 0.804803 | 1.81E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene067588 | 0.873637 | 1.26E-67 | -1.69E-46 |
| MS.gene06090 | MS.gene067588 | 0.817331 | 3.49E-52 | -1.69E-46 |
| MS.gene06092 | MS.gene067588 | 0.84228 | 2.85E-58 | -1.69E-46 |
| MS.gene061150 | MS.gene067588 | 0.852229 | 5.29E-61 | -1.69E-46 |
| MS.gene061200 | MS.gene067588 | 0.867129 | 1.72E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067588.t1 | MTR_4g083370 | 87.151 | 179 | 14 | 1 | 1 | 179 | 1 | 170 | 1.36e-96 | 280 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067588.t1 | AT4G26370 | 61.404 | 114 | 41 | 1 | 66 | 179 | 69 | 179 | 3.70e-38 | 131 |
| MS.gene067588.t1 | AT4G26370 | 61.404 | 114 | 41 | 1 | 66 | 179 | 69 | 179 | 3.70e-38 | 131 |
| MS.gene067588.t1 | AT4G26370 | 60.526 | 114 | 42 | 1 | 66 | 179 | 69 | 179 | 3.46e-37 | 130 |
Find 48 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGGTTTGGGAAGGAATT+TGG | 0.119074 | 4.1:+24400978 | None:intergenic |
| TGAAGTAGCGGTGTTAATTT+TGG | 0.202201 | 4.1:+24400960 | None:intergenic |
| TTGGGTTTGGGAAGGAATTT+GGG | 0.203019 | 4.1:+24400979 | None:intergenic |
| TCATCTGTTTCAACGATAAC+AGG | 0.318092 | 4.1:+24400478 | None:intergenic |
| GCAAAAGCGGTGGTTGAGTT+TGG | 0.331587 | 4.1:+24401044 | None:intergenic |
| TATAATTTATGCTTCGTGTT+TGG | 0.348060 | 4.1:-24400695 | MS.gene067588:CDS |
| TGCTTCGTGTTTGGAGGGAT+TGG | 0.362504 | 4.1:-24400686 | MS.gene067588:CDS |
| AAGAAGCTAATGAACTTCTA+AGG | 0.369066 | 4.1:-24400456 | MS.gene067588:CDS |
| AGAGAGCATTTCAGAGATAA+AGG | 0.376806 | 4.1:+24400934 | None:intergenic |
| GAGTATAATCACATGAGTTT+CGG | 0.405577 | 4.1:-24400508 | MS.gene067588:CDS |
| ATTTAACAAGGACAAATTGT+TGG | 0.439004 | 4.1:-24400530 | MS.gene067588:CDS |
| TGGAGGGATTGGACCCGGTT+CGG | 0.439014 | 4.1:-24400675 | MS.gene067588:CDS |
| AATTTATGCTTCGTGTTTGG+AGG | 0.449542 | 4.1:-24400692 | MS.gene067588:CDS |
| AGAAGTTGAAGGTGAAGAGA+GGG | 0.454774 | 4.1:+24401071 | None:intergenic |
| CGTTTCTCAAATAACCGAAC+CGG | 0.455058 | 4.1:+24400661 | None:intergenic |
| GTCTTTGTCGAGTGCTAAAG+TGG | 0.463142 | 4.1:+24400903 | None:intergenic |
| AGGTGAAGAGAGGGGAAGTA+AGG | 0.465052 | 4.1:+24401080 | None:intergenic |
| AAGAAGTTGAAGGTGAAGAG+AGG | 0.465590 | 4.1:+24401070 | None:intergenic |
| ATTCAACTCGAGTCTGCAAT+TGG | 0.472202 | 4.1:-24400430 | MS.gene067588:CDS |
| TGGTGGTTTAGTAGTGAAGA+GGG | 0.487919 | 4.1:+24401018 | None:intergenic |
| GTGTTTGGAGGGATTGGACC+CGG | 0.500612 | 4.1:-24400680 | MS.gene067588:CDS |
| TTGCCTAAACTCGATAAAAC+CGG | 0.503153 | 4.1:-24400838 | MS.gene067588:CDS |
| CGGTTCGGTTATTTGAGAAA+CGG | 0.523373 | 4.1:-24400660 | MS.gene067588:CDS |
| ATTTATGCTTCGTGTTTGGA+GGG | 0.526272 | 4.1:-24400691 | MS.gene067588:CDS |
| GCAAGTTCTCTAGCGGCTCT+CGG | 0.536127 | 4.1:+24400802 | None:intergenic |
| AGTTTGGAAGAAGAAGTTGA+AGG | 0.542605 | 4.1:+24401060 | None:intergenic |
| GAAGTTGAAGGTGAAGAGAG+GGG | 0.577370 | 4.1:+24401072 | None:intergenic |
| TATAATCACATGAGTTTCGG+AGG | 0.587444 | 4.1:-24400505 | MS.gene067588:CDS |
| GGAAGTGAGAGTAACGGTGG+TGG | 0.588538 | 4.1:+24401001 | None:intergenic |
| CTCCACACTTCAACAATGGA+GGG | 0.590137 | 4.1:-24401105 | None:intergenic |
| TGGGTTTGGGAAGGAATTTG+GGG | 0.610576 | 4.1:+24400980 | None:intergenic |
| GTGGTGGTTTAGTAGTGAAG+AGG | 0.622444 | 4.1:+24401017 | None:intergenic |
| GTGAAGAGGGGAAGCAAAAG+CGG | 0.626097 | 4.1:+24401031 | None:intergenic |
| GGTGGTTTAGTAGTGAAGAG+GGG | 0.629211 | 4.1:+24401019 | None:intergenic |
| TGGGGAAGTGAGAGTAACGG+TGG | 0.638686 | 4.1:+24400998 | None:intergenic |
| ATTTGGGGAAGTGAGAGTAA+CGG | 0.641749 | 4.1:+24400995 | None:intergenic |
| GGTTGGTTATGAATTTAACA+AGG | 0.642550 | 4.1:-24400542 | MS.gene067588:CDS |
| TCTGTTTCAACGATAACAGG+TGG | 0.649999 | 4.1:+24400481 | None:intergenic |
| AGATAAAGGTGATGAAGTAG+CGG | 0.660310 | 4.1:+24400948 | None:intergenic |
| TCTCGGACTACAAAACCGAC+CGG | 0.664343 | 4.1:+24400819 | None:intergenic |
| ATAATCACATGAGTTTCGGA+GGG | 0.671556 | 4.1:-24400504 | MS.gene067588:CDS |
| TTACAGAGCAAGTTCTCTAG+CGG | 0.672676 | 4.1:+24400795 | None:intergenic |
| GTTTCTCAAATAACCGAACC+GGG | 0.676933 | 4.1:+24400662 | None:intergenic |
| TCTCTGAAATGCTCTCTCCG+TGG | 0.679129 | 4.1:-24400928 | MS.gene067588:CDS |
| AAACGGATGAATGAGCGTAG+AGG | 0.681961 | 4.1:-24400643 | MS.gene067588:intron |
| CTAAACTCGATAAAACCGGT+CGG | 0.694768 | 4.1:-24400834 | MS.gene067588:CDS |
| CGAGTGCTAAAGTGGAACCA+CGG | 0.698369 | 4.1:+24400911 | None:intergenic |
| AAGAGGGGAAGCAAAAGCGG+TGG | 0.698794 | 4.1:+24401034 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGTGTTTGTTTTTTATAG+AGG | - | chr4.1:24400944-24400963 | MS.gene067588:CDS | 20.0% |
| ! | ATTTAACAAGGACAAATTGT+TGG | - | chr4.1:24400977-24400996 | MS.gene067588:CDS | 25.0% |
| ! | TATAATTTATGCTTCGTGTT+TGG | - | chr4.1:24400812-24400831 | MS.gene067588:CDS | 25.0% |
| !! | GTATTTGGAATTAACGTTAA+CGG | - | chr4.1:24400771-24400790 | MS.gene067588:intron | 25.0% |
| !!! | ATTGTTAACTGTTTTGGTTT+TGG | - | chr4.1:24400889-24400908 | MS.gene067588:CDS | 25.0% |
| !!! | TGTTTGTTTTTTATAGAGGT+TGG | - | chr4.1:24400948-24400967 | MS.gene067588:CDS | 25.0% |
| AAGAAGCTAATGAACTTCTA+AGG | - | chr4.1:24401051-24401070 | MS.gene067588:CDS | 30.0% | |
| GAGTATAATCACATGAGTTT+CGG | - | chr4.1:24400999-24401018 | MS.gene067588:CDS | 30.0% | |
| ! | GAGGTAATTGTTAACTGTTT+TGG | - | chr4.1:24400883-24400902 | MS.gene067588:CDS | 30.0% |
| ! | GGTTGGTTATGAATTTAACA+AGG | - | chr4.1:24400965-24400984 | MS.gene067588:CDS | 30.0% |
| !! | GTGTACTGCATTTTAGTATT+TGG | - | chr4.1:24400756-24400775 | MS.gene067588:intron | 30.0% |
| AATTTATGCTTCGTGTTTGG+AGG | - | chr4.1:24400815-24400834 | MS.gene067588:CDS | 35.0% | |
| AGATAAAGGTGATGAAGTAG+CGG | + | chr4.1:24400562-24400581 | None:intergenic | 35.0% | |
| AGTTTGGAAGAAGAAGTTGA+AGG | + | chr4.1:24400450-24400469 | None:intergenic | 35.0% | |
| ATAATCACATGAGTTTCGGA+GGG | - | chr4.1:24401003-24401022 | MS.gene067588:CDS | 35.0% | |
| ATTTATGCTTCGTGTTTGGA+GGG | - | chr4.1:24400816-24400835 | MS.gene067588:CDS | 35.0% | |
| TATAATCACATGAGTTTCGG+AGG | - | chr4.1:24401002-24401021 | MS.gene067588:CDS | 35.0% | |
| TCATCTGTTTCAACGATAAC+AGG | + | chr4.1:24401032-24401051 | None:intergenic | 35.0% | |
| TTGCCTAAACTCGATAAAAC+CGG | - | chr4.1:24400669-24400688 | MS.gene067588:CDS | 35.0% | |
| ! | TTTGGTTGTTGTTGGTATTG+TGG | - | chr4.1:24400907-24400926 | MS.gene067588:CDS | 35.0% |
| !! | AGAGAGCATTTCAGAGATAA+AGG | + | chr4.1:24400576-24400595 | None:intergenic | 35.0% |
| !! | GAAGTAGCGGTGTTAATTTT+GGG | + | chr4.1:24400549-24400568 | None:intergenic | 35.0% |
| !! | TGAAGTAGCGGTGTTAATTT+TGG | + | chr4.1:24400550-24400569 | None:intergenic | 35.0% |
| !! | TTAACGGTCTTTGATTTTGC+AGG | - | chr4.1:24400787-24400806 | MS.gene067588:intron | 35.0% |
| !!! | GTTTTGGTTTTGGTTGTTGT+TGG | - | chr4.1:24400899-24400918 | MS.gene067588:CDS | 35.0% |
| !!! | TGTTAATTTTGGGTTTGGGA+AGG | + | chr4.1:24400539-24400558 | None:intergenic | 35.0% |
| AAGAAGTTGAAGGTGAAGAG+AGG | + | chr4.1:24400440-24400459 | None:intergenic | 40.0% | |
| AGAAGTTGAAGGTGAAGAGA+GGG | + | chr4.1:24400439-24400458 | None:intergenic | 40.0% | |
| ATTCAACTCGAGTCTGCAAT+TGG | - | chr4.1:24401077-24401096 | MS.gene067588:CDS | 40.0% | |
| ATTTGGGGAAGTGAGAGTAA+CGG | + | chr4.1:24400515-24400534 | None:intergenic | 40.0% | |
| CGTTTCTCAAATAACCGAAC+CGG | + | chr4.1:24400849-24400868 | None:intergenic | 40.0% | |
| CTAAACTCGATAAAACCGGT+CGG | - | chr4.1:24400673-24400692 | MS.gene067588:CDS | 40.0% | |
| GTTTCTCAAATAACCGAACC+GGG | + | chr4.1:24400848-24400867 | None:intergenic | 40.0% | |
| TCTGTTTCAACGATAACAGG+TGG | + | chr4.1:24401029-24401048 | None:intergenic | 40.0% | |
| TGGTGGTTTAGTAGTGAAGA+GGG | + | chr4.1:24400492-24400511 | None:intergenic | 40.0% | |
| TTACAGAGCAAGTTCTCTAG+CGG | + | chr4.1:24400715-24400734 | None:intergenic | 40.0% | |
| TTGGGTTTGGGAAGGAATTT+GGG | + | chr4.1:24400531-24400550 | None:intergenic | 40.0% | |
| ! | TTTGGGTTTGGGAAGGAATT+TGG | + | chr4.1:24400532-24400551 | None:intergenic | 40.0% |
| !! | CGGTTCGGTTATTTGAGAAA+CGG | - | chr4.1:24400847-24400866 | MS.gene067588:CDS | 40.0% |
| !!! | AGCGGTGTTAATTTTGGGTT+TGG | + | chr4.1:24400544-24400563 | None:intergenic | 40.0% |
| !!! | GCGGTGTTAATTTTGGGTTT+GGG | + | chr4.1:24400543-24400562 | None:intergenic | 40.0% |
| AAACGGATGAATGAGCGTAG+AGG | - | chr4.1:24400864-24400883 | MS.gene067588:CDS | 45.0% | |
| GAAGTTGAAGGTGAAGAGAG+GGG | + | chr4.1:24400438-24400457 | None:intergenic | 45.0% | |
| GGTGGTTTAGTAGTGAAGAG+GGG | + | chr4.1:24400491-24400510 | None:intergenic | 45.0% | |
| GTCTTTGTCGAGTGCTAAAG+TGG | + | chr4.1:24400607-24400626 | None:intergenic | 45.0% | |
| GTGGTGGTTTAGTAGTGAAG+AGG | + | chr4.1:24400493-24400512 | None:intergenic | 45.0% | |
| TGGGTTTGGGAAGGAATTTG+GGG | + | chr4.1:24400530-24400549 | None:intergenic | 45.0% | |
| !! | CGACCGGTTTTATCGAGTTT+AGG | + | chr4.1:24400675-24400694 | None:intergenic | 45.0% |
| AGGTGAAGAGAGGGGAAGTA+AGG | + | chr4.1:24400430-24400449 | None:intergenic | 50.0% | |
| CGAGTGCTAAAGTGGAACCA+CGG | + | chr4.1:24400599-24400618 | None:intergenic | 50.0% | |
| GCAAAAGCGGTGGTTGAGTT+TGG | + | chr4.1:24400466-24400485 | None:intergenic | 50.0% | |
| GTGAAGAGGGGAAGCAAAAG+CGG | + | chr4.1:24400479-24400498 | None:intergenic | 50.0% | |
| TCTCGGACTACAAAACCGAC+CGG | + | chr4.1:24400691-24400710 | None:intergenic | 50.0% | |
| TGCTTCGTGTTTGGAGGGAT+TGG | - | chr4.1:24400821-24400840 | MS.gene067588:CDS | 50.0% | |
| !! | TCTCTGAAATGCTCTCTCCG+TGG | - | chr4.1:24400579-24400598 | MS.gene067588:intron | 50.0% |
| AAGAGGGGAAGCAAAAGCGG+TGG | + | chr4.1:24400476-24400495 | None:intergenic | 55.0% | |
| GCAAGTTCTCTAGCGGCTCT+CGG | + | chr4.1:24400708-24400727 | None:intergenic | 55.0% | |
| GGAAGTGAGAGTAACGGTGG+TGG | + | chr4.1:24400509-24400528 | None:intergenic | 55.0% | |
| GTGTTTGGAGGGATTGGACC+CGG | - | chr4.1:24400827-24400846 | MS.gene067588:CDS | 55.0% | |
| TGGGGAAGTGAGAGTAACGG+TGG | + | chr4.1:24400512-24400531 | None:intergenic | 55.0% | |
| TGGAGGGATTGGACCCGGTT+CGG | - | chr4.1:24400832-24400851 | MS.gene067588:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 24400417 | 24401112 | 24400417 | ID=MS.gene067588 |
| chr4.1 | mRNA | 24400417 | 24401112 | 24400417 | ID=MS.gene067588.t1;Parent=MS.gene067588 |
| chr4.1 | exon | 24400799 | 24401112 | 24400799 | ID=MS.gene067588.t1.exon1;Parent=MS.gene067588.t1 |
| chr4.1 | CDS | 24400799 | 24401112 | 24400799 | ID=cds.MS.gene067588.t1;Parent=MS.gene067588.t1 |
| chr4.1 | exon | 24400644 | 24400720 | 24400644 | ID=MS.gene067588.t1.exon2;Parent=MS.gene067588.t1 |
| chr4.1 | CDS | 24400644 | 24400720 | 24400644 | ID=cds.MS.gene067588.t1;Parent=MS.gene067588.t1 |
| chr4.1 | exon | 24400417 | 24400565 | 24400417 | ID=MS.gene067588.t1.exon3;Parent=MS.gene067588.t1 |
| chr4.1 | CDS | 24400417 | 24400565 | 24400417 | ID=cds.MS.gene067588.t1;Parent=MS.gene067588.t1 |
| Gene Sequence |
| Protein sequence |
