Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08588.t1 | XP_003606488.1 | 97.5 | 489 | 12 | 0 | 1 | 489 | 1 | 489 | 9.00E-285 | 988.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08588.t1 | G7JRG3 | 97.5 | 489 | 12 | 0 | 1 | 489 | 1 | 489 | 6.5e-285 | 988.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene08588 | 0.812525 | 4.06E-51 | -1.69E-46 |
MS.gene049222 | MS.gene08588 | 0.807078 | 6.03E-50 | -1.69E-46 |
MS.gene049232 | MS.gene08588 | 0.82144 | 4.03E-53 | -1.69E-46 |
MS.gene049633 | MS.gene08588 | 0.825599 | 4.29E-54 | -1.69E-46 |
MS.gene049656 | MS.gene08588 | 0.827255 | 1.73E-54 | -1.69E-46 |
MS.gene049657 | MS.gene08588 | 0.833539 | 5.03E-56 | -1.69E-46 |
MS.gene049865 | MS.gene08588 | 0.924221 | 9.41E-90 | -1.69E-46 |
MS.gene05010 | MS.gene08588 | 0.80578 | 1.13E-49 | -1.69E-46 |
MS.gene050170 | MS.gene08588 | 0.860089 | 2.63E-63 | -1.69E-46 |
MS.gene050323 | MS.gene08588 | 0.814756 | 1.31E-51 | -1.69E-46 |
MS.gene050375 | MS.gene08588 | 0.802336 | 5.89E-49 | -1.69E-46 |
MS.gene050496 | MS.gene08588 | 0.810032 | 1.41E-50 | -1.69E-46 |
MS.gene050577 | MS.gene08588 | 0.810263 | 1.26E-50 | -1.69E-46 |
MS.gene050747 | MS.gene08588 | 0.805094 | 1.58E-49 | -1.69E-46 |
MS.gene05081 | MS.gene08588 | 0.811129 | 8.17E-51 | -1.69E-46 |
MS.gene050868 | MS.gene08588 | 0.837373 | 5.40E-57 | -1.69E-46 |
MS.gene050871 | MS.gene08588 | 0.835442 | 1.67E-56 | -1.69E-46 |
MS.gene050904 | MS.gene08588 | 0.82631 | 2.91E-54 | -1.69E-46 |
MS.gene050950 | MS.gene08588 | 0.806001 | 1.02E-49 | -1.69E-46 |
MS.gene051838 | MS.gene08588 | 0.815236 | 1.02E-51 | -1.69E-46 |
MS.gene051941 | MS.gene08588 | 0.803079 | 4.14E-49 | -1.69E-46 |
MS.gene051946 | MS.gene08588 | -0.800716 | 1.27E-48 | -1.69E-46 |
MS.gene052066 | MS.gene08588 | 0.808458 | 3.07E-50 | -1.69E-46 |
MS.gene052346 | MS.gene08588 | 0.817951 | 2.53E-52 | -1.69E-46 |
MS.gene052482 | MS.gene08588 | 0.850056 | 2.17E-60 | -1.69E-46 |
MS.gene052486 | MS.gene08588 | 0.863669 | 2.11E-64 | -1.69E-46 |
MS.gene052503 | MS.gene08588 | 0.821189 | 4.61E-53 | -1.69E-46 |
MS.gene052506 | MS.gene08588 | 0.802434 | 5.62E-49 | -1.69E-46 |
MS.gene052823 | MS.gene08588 | 0.82008 | 8.29E-53 | -1.69E-46 |
MS.gene052825 | MS.gene08588 | 0.819006 | 1.46E-52 | -1.69E-46 |
MS.gene052966 | MS.gene08588 | 0.85597 | 4.41E-62 | -1.69E-46 |
MS.gene053203 | MS.gene08588 | 0.842322 | 2.78E-58 | -1.69E-46 |
MS.gene053318 | MS.gene08588 | 0.827626 | 1.41E-54 | -1.69E-46 |
MS.gene053479 | MS.gene08588 | 0.800496 | 1.40E-48 | -1.69E-46 |
MS.gene053480 | MS.gene08588 | 0.829079 | 6.29E-55 | -1.69E-46 |
MS.gene053574 | MS.gene08588 | 0.822873 | 1.88E-53 | -1.69E-46 |
MS.gene053633 | MS.gene08588 | 0.8057 | 1.18E-49 | -1.69E-46 |
MS.gene053824 | MS.gene08588 | 0.834046 | 3.76E-56 | -1.69E-46 |
MS.gene053997 | MS.gene08588 | 0.893418 | 6.40E-75 | -1.69E-46 |
MS.gene054595 | MS.gene08588 | 0.820441 | 6.85E-53 | -1.69E-46 |
MS.gene05470 | MS.gene08588 | 0.807511 | 4.88E-50 | -1.69E-46 |
MS.gene054927 | MS.gene08588 | 0.81793 | 2.55E-52 | -1.69E-46 |
MS.gene055502 | MS.gene08588 | 0.803405 | 3.54E-49 | -1.69E-46 |
MS.gene055577 | MS.gene08588 | 0.819113 | 1.38E-52 | -1.69E-46 |
MS.gene05589 | MS.gene08588 | 0.852325 | 4.97E-61 | -1.69E-46 |
MS.gene056040 | MS.gene08588 | 0.817214 | 3.70E-52 | -1.69E-46 |
MS.gene056166 | MS.gene08588 | 0.845012 | 5.29E-59 | -1.69E-46 |
MS.gene056310 | MS.gene08588 | -0.806101 | 9.69E-50 | -1.69E-46 |
MS.gene056450 | MS.gene08588 | 0.801091 | 1.06E-48 | -1.69E-46 |
MS.gene056504 | MS.gene08588 | 0.838017 | 3.69E-57 | -1.69E-46 |
MS.gene056510 | MS.gene08588 | 0.813317 | 2.72E-51 | -1.69E-46 |
MS.gene056610 | MS.gene08588 | 0.816767 | 4.67E-52 | -1.69E-46 |
MS.gene056878 | MS.gene08588 | 0.834443 | 2.99E-56 | -1.69E-46 |
MS.gene057831 | MS.gene08588 | 0.809604 | 1.74E-50 | -1.69E-46 |
MS.gene057872 | MS.gene08588 | 0.813085 | 3.06E-51 | -1.69E-46 |
MS.gene058157 | MS.gene08588 | 0.806347 | 8.60E-50 | -1.69E-46 |
MS.gene058338 | MS.gene08588 | 0.807409 | 5.13E-50 | -1.69E-46 |
MS.gene05837 | MS.gene08588 | 0.85243 | 4.64E-61 | -1.69E-46 |
MS.gene059023 | MS.gene08588 | 0.854008 | 1.64E-61 | -1.69E-46 |
MS.gene059303 | MS.gene08588 | 0.845997 | 2.86E-59 | -1.69E-46 |
MS.gene059756 | MS.gene08588 | 0.80051 | 1.39E-48 | -1.69E-46 |
MS.gene059801 | MS.gene08588 | 0.80839 | 3.17E-50 | -1.69E-46 |
MS.gene059837 | MS.gene08588 | 0.829512 | 4.94E-55 | -1.69E-46 |
MS.gene059865 | MS.gene08588 | 0.80629 | 8.84E-50 | -1.69E-46 |
MS.gene05995 | MS.gene08588 | 0.820687 | 6.01E-53 | -1.69E-46 |
MS.gene05996 | MS.gene08588 | 0.837272 | 5.73E-57 | -1.69E-46 |
MS.gene06000 | MS.gene08588 | 0.835298 | 1.82E-56 | -1.69E-46 |
MS.gene060187 | MS.gene08588 | -0.861424 | 1.04E-63 | -1.69E-46 |
MS.gene060339 | MS.gene08588 | 0.812137 | 4.93E-51 | -1.69E-46 |
MS.gene060485 | MS.gene08588 | 0.80832 | 3.28E-50 | -1.69E-46 |
MS.gene060593 | MS.gene08588 | -0.805836 | 1.10E-49 | -1.69E-46 |
MS.gene060595 | MS.gene08588 | -0.850087 | 2.13E-60 | -1.69E-46 |
MS.gene060762 | MS.gene08588 | 0.81144 | 6.99E-51 | -1.69E-46 |
MS.gene060778 | MS.gene08588 | 0.817657 | 2.94E-52 | -1.69E-46 |
MS.gene06077 | MS.gene08588 | 0.857461 | 1.61E-62 | -1.69E-46 |
MS.gene060982 | MS.gene08588 | 0.835355 | 1.76E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08588.t1 | MTR_4g060900 | 97.546 | 489 | 12 | 0 | 1 | 489 | 1 | 489 | 0.0 | 998 |
MS.gene08588.t1 | MTR_7g100780 | 57.466 | 442 | 178 | 4 | 16 | 455 | 56 | 489 | 0.0 | 554 |
MS.gene08588.t1 | MTR_4g053620 | 32.456 | 342 | 180 | 10 | 104 | 434 | 30 | 331 | 6.66e-43 | 156 |
MS.gene08588.t1 | MTR_1g060150 | 31.065 | 338 | 197 | 8 | 119 | 450 | 68 | 375 | 3.01e-40 | 149 |
MS.gene08588.t1 | MTR_3g104770 | 32.087 | 321 | 174 | 11 | 123 | 434 | 129 | 414 | 4.65e-40 | 150 |
MS.gene08588.t1 | MTR_2g086290 | 30.275 | 327 | 196 | 9 | 119 | 443 | 36 | 332 | 4.42e-39 | 145 |
MS.gene08588.t1 | MTR_1g060130 | 29.223 | 373 | 221 | 10 | 86 | 450 | 38 | 375 | 6.48e-39 | 145 |
MS.gene08588.t1 | MTR_2g086300 | 31.437 | 334 | 189 | 11 | 122 | 449 | 47 | 346 | 5.39e-38 | 142 |
MS.gene08588.t1 | MTR_1g050458 | 28.972 | 321 | 187 | 8 | 119 | 430 | 36 | 324 | 2.21e-35 | 135 |
MS.gene08588.t1 | MTR_1g050458 | 44.444 | 135 | 72 | 2 | 119 | 250 | 36 | 170 | 6.22e-29 | 116 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08588.t1 | AT3G09690 | 60.089 | 451 | 171 | 3 | 9 | 457 | 57 | 500 | 0.0 | 585 |
MS.gene08588.t1 | AT3G09690 | 60.089 | 451 | 171 | 3 | 9 | 457 | 57 | 500 | 0.0 | 585 |
MS.gene08588.t1 | AT5G02970 | 56.182 | 461 | 193 | 3 | 13 | 471 | 58 | 511 | 0.0 | 556 |
MS.gene08588.t1 | AT5G22460 | 28.531 | 354 | 210 | 8 | 88 | 430 | 1 | 322 | 1.27e-40 | 149 |
MS.gene08588.t1 | AT5G22460 | 28.531 | 354 | 210 | 8 | 88 | 430 | 1 | 322 | 1.27e-40 | 149 |
MS.gene08588.t1 | AT5G22460 | 28.531 | 354 | 210 | 8 | 88 | 430 | 1 | 322 | 1.27e-40 | 149 |
MS.gene08588.t1 | AT3G44510 | 32.424 | 330 | 184 | 12 | 124 | 444 | 8 | 307 | 3.82e-39 | 145 |
MS.gene08588.t1 | AT3G54240 | 27.893 | 337 | 212 | 6 | 119 | 452 | 40 | 348 | 6.54e-39 | 145 |
MS.gene08588.t1 | AT1G74280 | 29.358 | 327 | 179 | 6 | 119 | 430 | 56 | 345 | 7.12e-38 | 142 |
MS.gene08588.t1 | AT2G36290 | 30.636 | 346 | 206 | 9 | 93 | 430 | 8 | 327 | 5.64e-37 | 139 |
MS.gene08588.t1 | AT2G36290 | 30.460 | 348 | 204 | 10 | 93 | 430 | 22 | 341 | 7.98e-37 | 139 |
MS.gene08588.t1 | AT1G08310 | 30.145 | 345 | 176 | 10 | 119 | 444 | 5 | 303 | 7.90e-36 | 135 |
MS.gene08588.t1 | AT3G44510 | 43.094 | 181 | 85 | 6 | 124 | 296 | 8 | 178 | 1.30e-35 | 132 |
MS.gene08588.t1 | AT1G08310 | 29.971 | 347 | 177 | 10 | 119 | 444 | 5 | 306 | 2.21e-35 | 134 |
MS.gene08588.t1 | AT1G74290 | 29.595 | 321 | 187 | 7 | 119 | 430 | 56 | 346 | 1.73e-33 | 130 |
MS.gene08588.t1 | AT1G74300 | 29.012 | 324 | 184 | 6 | 119 | 430 | 39 | 328 | 3.08e-33 | 129 |
MS.gene08588.t1 | AT3G03240 | 28.481 | 316 | 185 | 9 | 122 | 430 | 35 | 316 | 4.93e-32 | 125 |
MS.gene08588.t1 | AT3G48410 | 27.249 | 389 | 211 | 12 | 82 | 448 | 33 | 371 | 3.88e-30 | 121 |
MS.gene08588.t1 | AT1G08310 | 47.368 | 133 | 68 | 2 | 119 | 250 | 5 | 136 | 5.15e-30 | 117 |
MS.gene08588.t1 | AT3G48410 | 27.688 | 372 | 199 | 11 | 82 | 431 | 75 | 398 | 6.06e-30 | 121 |
MS.gene08588.t1 | AT3G03230 | 27.097 | 310 | 196 | 6 | 122 | 430 | 35 | 315 | 2.02e-29 | 118 |
MS.gene08588.t1 | AT1G74300 | 27.376 | 263 | 147 | 5 | 178 | 430 | 1 | 229 | 2.37e-22 | 96.3 |
Find 115 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTTCATTGTTAAGAAATT+TGG | 0.136021 | 4.1:+38391118 | MS.gene08588:CDS |
ACAAAAGGAATGTGCTTAAT+TGG | 0.161569 | 4.1:+38394013 | MS.gene08588:CDS |
TATCAGCGAAGTTTCTTATC+AGG | 0.205500 | 4.1:+38393499 | MS.gene08588:CDS |
CTCTTGGTGTTGACAAGTTT+TGG | 0.207857 | 4.1:+38392755 | MS.gene08588:CDS |
CAAGTTCAACGTTGGCTTCT+AGG | 0.207888 | 4.1:-38395089 | None:intergenic |
ATCCAATCTATGAGGATTTC+TGG | 0.211014 | 4.1:+38393869 | MS.gene08588:CDS |
TGTGGAGGAAGCTGCTTTGC+AGG | 0.230425 | 4.1:+38393939 | MS.gene08588:CDS |
TTCCTTTCCTCTCGGCTTGC+AGG | 0.230918 | 4.1:+38392482 | MS.gene08588:CDS |
TGCTTTGCAGGTCTCGAATT+GGG | 0.231694 | 4.1:+38393951 | MS.gene08588:CDS |
CACTGAAACTCAGGAGTATA+CGG | 0.248631 | 4.1:+38394050 | MS.gene08588:CDS |
CGAAGCTTTCCTAGACTTCT+TGG | 0.254206 | 4.1:+38393469 | MS.gene08588:CDS |
ACGTTGGCTTCTAGGGTAAT+TGG | 0.261598 | 4.1:-38395081 | None:intergenic |
CTAACTGTAGAATTCTTAAA+AGG | 0.264307 | 4.1:+38391055 | MS.gene08588:CDS |
GTTAAGAAATTTGGAAAGAT+TGG | 0.278897 | 4.1:+38391127 | MS.gene08588:CDS |
ACTTATGATCTGCCTGGTTT+TGG | 0.280877 | 4.1:+38392664 | MS.gene08588:CDS |
TGAGGCTGAGAGGGCCTTGC+GGG | 0.293815 | 4.1:-38395038 | None:intergenic |
TCCTCATCCCAAACGAAATC+TGG | 0.315816 | 4.1:+38392696 | MS.gene08588:CDS |
TTAATACCTGCAAGTCTATC+AGG | 0.327430 | 4.1:-38392832 | None:intergenic |
TGACGATTCCAGATTTCGTT+TGG | 0.334193 | 4.1:-38392704 | None:intergenic |
TCTGCAACTTGAGGTCTAAA+AGG | 0.346212 | 4.1:-38393981 | None:intergenic |
CTGCTTTGCAGGTCTCGAAT+TGG | 0.353135 | 4.1:+38393950 | MS.gene08588:CDS |
CGTTTGAAATTAGGAATTCC+TGG | 0.355664 | 4.1:+38392598 | MS.gene08588:intron |
TACATACCTGATAGACTTGC+AGG | 0.361619 | 4.1:+38392826 | MS.gene08588:CDS |
TGCTACCCGCATTATGCTTC+CGG | 0.364526 | 4.1:+38392382 | MS.gene08588:CDS |
TGCCAGAAATCCTCATAGAT+TGG | 0.373531 | 4.1:-38393871 | None:intergenic |
TTTGTCATCAAAGGATCATA+TGG | 0.395653 | 4.1:-38393382 | None:intergenic |
CAGGAGTATACGGGATTTCT+CGG | 0.400274 | 4.1:+38394060 | MS.gene08588:CDS |
GACGATTCCAGATTTCGTTT+GGG | 0.408411 | 4.1:-38392703 | None:intergenic |
CTCATACTTTCCTTTCCTCT+CGG | 0.410239 | 4.1:+38392474 | MS.gene08588:CDS |
GTTTCTTTACTTGCTTTCTC+AGG | 0.414312 | 4.1:+38391259 | MS.gene08588:CDS |
CAAGTGGAAGCAAGCATGCT+TGG | 0.416127 | 4.1:+38392791 | MS.gene08588:CDS |
GACGAAGAACCTGGAACAAA+TGG | 0.419319 | 4.1:+38393413 | MS.gene08588:CDS |
GGGATGTGGAAGAATCAATT+AGG | 0.420004 | 4.1:+38393896 | MS.gene08588:CDS |
GAATGTGCTTAATTGGCTTA+AGG | 0.424123 | 4.1:+38394020 | MS.gene08588:CDS |
TGAAGTGGGTCTTTATCTTC+AGG | 0.424536 | 4.1:-38391214 | None:intergenic |
ATACAAGGAGCAAGGTGTTT+CGG | 0.426151 | 4.1:+38392421 | MS.gene08588:CDS |
CTCTCTTCGTTTGTCATCAA+AGG | 0.426304 | 4.1:-38393391 | None:intergenic |
TTAAGAAATTTGGAAAGATT+GGG | 0.427485 | 4.1:+38391128 | MS.gene08588:CDS |
AAAAGTATATATATGTGAAA+TGG | 0.431214 | 4.1:-38394972 | None:intergenic |
TGTGTAAGAGAGTTCATGAT+TGG | 0.436128 | 4.1:+38391022 | MS.gene08588:CDS |
GATTCACTGATGGAAGAGTT+TGG | 0.439690 | 4.1:+38392628 | MS.gene08588:CDS |
AGGTGGCTGTCTTTATCTCT+TGG | 0.445446 | 4.1:+38393541 | MS.gene08588:CDS |
ACGAAGAGAGACGAAGAACC+TGG | 0.455949 | 4.1:+38393404 | MS.gene08588:CDS |
AAGTTCAACGTTGGCTTCTA+GGG | 0.458277 | 4.1:-38395088 | None:intergenic |
CTCACTTGCCATATGTGTAT+TGG | 0.459865 | 4.1:-38394084 | None:intergenic |
TCCAGATTTCGTTTGGGATG+AGG | 0.462321 | 4.1:-38392697 | None:intergenic |
AAGTGGAAGCAAGCATGCTT+GGG | 0.466214 | 4.1:+38392792 | MS.gene08588:CDS |
TATGTGAAATGGCCTTCATA+TGG | 0.467837 | 4.1:-38394961 | None:intergenic |
GGATCATATGGGTTCACCAT+GGG | 0.473212 | 4.1:-38393370 | None:intergenic |
TTCTCGGTCCAATACACATA+TGG | 0.474933 | 4.1:+38394076 | MS.gene08588:CDS |
GGAAGCATGGTCAGATTGAC+AGG | 0.481984 | 4.1:+38393521 | MS.gene08588:CDS |
TTGATTACTTATGATCTGCC+TGG | 0.485276 | 4.1:+38392658 | MS.gene08588:CDS |
GTGTAAGAGAGTTCATGATT+GGG | 0.487800 | 4.1:+38391023 | MS.gene08588:CDS |
ATAAAGACCCACTTCATGCT+TGG | 0.491569 | 4.1:+38391221 | MS.gene08588:CDS |
TTTGTGCATCGCGTACTACC+TGG | 0.493610 | 4.1:+38394919 | MS.gene08588:CDS |
AGTTTGTGTACTGCAGCTCC+AGG | 0.498358 | 4.1:-38394937 | None:intergenic |
TGCAGAAACGAAAATACAAA+AGG | 0.502548 | 4.1:+38393998 | MS.gene08588:CDS |
TGGAAGATACATGGCATACA+AGG | 0.504189 | 4.1:+38392406 | MS.gene08588:CDS |
GCACAAAATCAGTCATTGAC+GGG | 0.504891 | 4.1:-38394903 | None:intergenic |
CTATGAGGATTTCTGGCAAA+GGG | 0.505065 | 4.1:+38393876 | MS.gene08588:CDS |
GTCTTTATCTCTTGGAAAGA+GGG | 0.506713 | 4.1:+38393549 | MS.gene08588:CDS |
GGATTTCTGGCAAAGGGATG+TGG | 0.507209 | 4.1:+38393882 | MS.gene08588:CDS |
CGAGAGGAAAGGAAAGTATG+AGG | 0.512168 | 4.1:-38392473 | None:intergenic |
AAAATACTTGCTTCTCAAGT+GGG | 0.518790 | 4.1:-38392346 | None:intergenic |
TGTCTTTATCTCTTGGAAAG+AGG | 0.519291 | 4.1:+38393548 | MS.gene08588:CDS |
GCTTTGCAGGTCTCGAATTG+GGG | 0.522101 | 4.1:+38393952 | MS.gene08588:CDS |
AAAGCAGCTTCCTCCACAAA+GGG | 0.525187 | 4.1:-38393934 | None:intergenic |
TTGTCATCAAAGGATCATAT+GGG | 0.529008 | 4.1:-38393381 | None:intergenic |
TAGAAGAAACCAAGAAGTCT+AGG | 0.529335 | 4.1:-38393478 | None:intergenic |
TGTAAGAGAGTTCATGATTG+GGG | 0.530248 | 4.1:+38391024 | MS.gene08588:CDS |
ATGTGAAATGGCCTTCATAT+GGG | 0.532028 | 4.1:-38394960 | None:intergenic |
ATCAGCGAAGTTTCTTATCA+GGG | 0.532446 | 4.1:+38393500 | MS.gene08588:CDS |
TATGCCATGTATCTTCCATC+CGG | 0.539640 | 4.1:-38392401 | None:intergenic |
ATAATGCGGGTAGCACTAGC+AGG | 0.539782 | 4.1:-38392374 | None:intergenic |
AAGAAATGCTGAGGCTGAGA+GGG | 0.556389 | 4.1:-38395047 | None:intergenic |
CTGAGGCTGAGAGGGCCTTG+CGG | 0.559279 | 4.1:-38395039 | None:intergenic |
TTGCTGTTCAAGTTCAACGT+TGG | 0.561905 | 4.1:-38395097 | None:intergenic |
TGGATCATTGGTTACTCAAG+TGG | 0.565359 | 4.1:+38392775 | MS.gene08588:CDS |
TGGTGTTAAAGATTCACTGA+TGG | 0.566190 | 4.1:+38392618 | MS.gene08588:CDS |
ACTGAAACTCAGGAGTATAC+GGG | 0.566332 | 4.1:+38394051 | MS.gene08588:CDS |
ATCAGTGAATCTTTAACACC+AGG | 0.570063 | 4.1:-38392616 | None:intergenic |
CAAAGCAGCTTCCTCCACAA+AGG | 0.573514 | 4.1:-38393935 | None:intergenic |
GATGGAAGATCCAATCTATG+AGG | 0.573832 | 4.1:+38393861 | MS.gene08588:CDS |
TGCACAAAATCAGTCATTGA+CGG | 0.575384 | 4.1:-38394904 | None:intergenic |
ATGACAAACCAAGCATGAAG+TGG | 0.579236 | 4.1:-38391229 | None:intergenic |
TCCATCCGGAAGCATAATGC+GGG | 0.582006 | 4.1:-38392387 | None:intergenic |
GTACACAAACTCCCATATGA+AGG | 0.587384 | 4.1:+38394949 | MS.gene08588:CDS |
GGATCGCTCTCACCAAAACC+AGG | 0.589789 | 4.1:-38392676 | None:intergenic |
AGGAAATGCGAAACCCTTTG+TGG | 0.591906 | 4.1:+38393921 | MS.gene08588:CDS |
TTGTTCAACAATTTCTCACA+AGG | 0.592322 | 4.1:-38391166 | None:intergenic |
GAGGCTGAGAGGGCCTTGCG+GGG | 0.592778 | 4.1:-38395037 | None:intergenic |
ACCCGCATTATGCTTCCGGA+TGG | 0.593805 | 4.1:+38392386 | MS.gene08588:CDS |
TTCCATCCGGAAGCATAATG+CGG | 0.604964 | 4.1:-38392388 | None:intergenic |
CACAAAATCAGTCATTGACG+GGG | 0.606548 | 4.1:-38394902 | None:intergenic |
AACCTGCAAGCCGAGAGGAA+AGG | 0.606711 | 4.1:-38392484 | None:intergenic |
GATCATATGGGTTCACCATG+GGG | 0.606822 | 4.1:-38393369 | None:intergenic |
GTGGAAGAATCAATTAGGCA+AGG | 0.615184 | 4.1:+38393901 | MS.gene08588:CDS |
AGTTTCTTATCAGGGAAGCA+TGG | 0.625370 | 4.1:+38393508 | MS.gene08588:CDS |
ACAGGGAATGGATGACAAAG+TGG | 0.625940 | 4.1:+38394876 | MS.gene08588:intron |
TCTATGAGGATTTCTGGCAA+AGG | 0.628041 | 4.1:+38393875 | MS.gene08588:CDS |
GCTTCCGGATGGAAGATACA+TGG | 0.631513 | 4.1:+38392397 | MS.gene08588:CDS |
TGACAAACCAAGCATGAAGT+GGG | 0.631660 | 4.1:-38391228 | None:intergenic |
AGGATCATATGGGTTCACCA+TGG | 0.635002 | 4.1:-38393371 | None:intergenic |
CAAGAAGTAGTAGCAAGTAG+TGG | 0.638951 | 4.1:+38395117 | MS.gene08588:CDS |
TACATGGCATACAAGGAGCA+AGG | 0.639291 | 4.1:+38392413 | MS.gene08588:CDS |
GTGTAGTAAATATCTGTCTG+TGG | 0.641522 | 4.1:-38395005 | None:intergenic |
AAAGAAATGCTGAGGCTGAG+AGG | 0.645314 | 4.1:-38395048 | None:intergenic |
CTACTTCTAAAGAAATGCTG+AGG | 0.649194 | 4.1:-38395056 | None:intergenic |
AAATACTTGCTTCTCAAGTG+GGG | 0.651959 | 4.1:-38392345 | None:intergenic |
ATCATATGGGTTCACCATGG+GGG | 0.655135 | 4.1:-38393368 | None:intergenic |
AAATGCGAAACCCTTTGTGG+AGG | 0.661010 | 4.1:+38393924 | MS.gene08588:CDS |
TTGTGTGTACTTCTAATCAG+TGG | 0.680829 | 4.1:-38395148 | None:intergenic |
AGCATGGTCAGATTGACAGG+TGG | 0.689331 | 4.1:+38393524 | MS.gene08588:CDS |
CAAACAACCTGCAAGCCGAG+AGG | 0.700337 | 4.1:-38392489 | None:intergenic |
ACAAAATCAGTCATTGACGG+GGG | 0.748115 | 4.1:-38394901 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CATATTTTTTTTTTAAGTTA+TGG | + | chr4.1:38391634-38391653 | MS.gene08588:intron | 10.0% |
!!! | ATATTTTCATATTTGCAATT+TGG | - | chr4.1:38394187-38394206 | None:intergenic | 15.0% |
!!! | ATGAAAATATTAGCTTTTAT+AGG | + | chr4.1:38394197-38394216 | MS.gene08588:intron | 15.0% |
!!! | ATTTATTGTATTGTGTTTTT+AGG | + | chr4.1:38392207-38392226 | MS.gene08588:intron | 15.0% |
!!! | GTAAAATATTTAAAACTCTT+GGG | - | chr4.1:38393809-38393828 | None:intergenic | 15.0% |
!!! | TACTTCATTAAATTTAGTTT+AGG | + | chr4.1:38392999-38393018 | MS.gene08588:intron | 15.0% |
!!! | TCTAAAATGAGTTTAAAAAT+TGG | - | chr4.1:38394324-38394343 | None:intergenic | 15.0% |
!!! | TGAAAATATTAGCTTTTATA+GGG | + | chr4.1:38394198-38394217 | MS.gene08588:intron | 15.0% |
!!! | TGTAAAATATTTAAAACTCT+TGG | - | chr4.1:38393810-38393829 | None:intergenic | 15.0% |
!! | AGTTAAATCAATAAACAAGA+CGG | + | chr4.1:38394711-38394730 | MS.gene08588:intron | 20.0% |
!! | TCTTTCATTGTTAAGAAATT+TGG | + | chr4.1:38391118-38391137 | MS.gene08588:CDS | 20.0% |
!! | TTAAGAAATTTGGAAAGATT+GGG | + | chr4.1:38391128-38391147 | MS.gene08588:CDS | 20.0% |
!!! | AAATTCTTTTAAGTTCTCAT+AGG | + | chr4.1:38394417-38394436 | MS.gene08588:intron | 20.0% |
!!! | ACTTTTAACTTGACAAAATT+TGG | + | chr4.1:38392907-38392926 | MS.gene08588:intron | 20.0% |
!!! | TAATTTAAAACTATGAATGC+AGG | + | chr4.1:38392016-38392035 | MS.gene08588:intron | 20.0% |
!!! | TACTTTTTTTTTTGAAGTTG+TGG | + | chr4.1:38391351-38391370 | MS.gene08588:intron | 20.0% |
!!! | TATGTATGGTTTTAAATTGT+GGG | + | chr4.1:38391449-38391468 | MS.gene08588:intron | 20.0% |
!!! | TCTATTTCTCAATTTATTAC+CGG | + | chr4.1:38393212-38393231 | MS.gene08588:intron | 20.0% |
! | AAATCTGTGTTTACAAAAGT+TGG | + | chr4.1:38393764-38393783 | MS.gene08588:intron | 25.0% |
! | AACAACCAAAAAAAGAAACA+TGG | - | chr4.1:38391299-38391318 | None:intergenic | 25.0% |
! | ACAACCAAAAAAAGAAACAT+GGG | - | chr4.1:38391298-38391317 | None:intergenic | 25.0% |
! | ACATACAAACAAAAACATAG+AGG | - | chr4.1:38394794-38394813 | None:intergenic | 25.0% |
! | AGCATAAAACATTGAGAATT+AGG | - | chr4.1:38392173-38392192 | None:intergenic | 25.0% |
! | ATCTTGATATTGTCACAAAA+TGG | + | chr4.1:38391488-38391507 | MS.gene08588:intron | 25.0% |
! | CATACAAACAAAAACATAGA+GGG | - | chr4.1:38394793-38394812 | None:intergenic | 25.0% |
! | CTAACTGTAGAATTCTTAAA+AGG | + | chr4.1:38391055-38391074 | MS.gene08588:CDS | 25.0% |
! | GCATAAAACATTGAGAATTA+GGG | - | chr4.1:38392172-38392191 | None:intergenic | 25.0% |
! | GTTAAGAAATTTGGAAAGAT+TGG | + | chr4.1:38391127-38391146 | MS.gene08588:CDS | 25.0% |
! | TCTTGATATTGTCACAAAAT+GGG | + | chr4.1:38391489-38391508 | MS.gene08588:intron | 25.0% |
! | TTGTAAAAAAGTAACTCTCA+AGG | - | chr4.1:38394299-38394318 | None:intergenic | 25.0% |
! | TTTCTTGACTACAAATAATC+TGG | + | chr4.1:38394639-38394658 | MS.gene08588:intron | 25.0% |
!! | AATTTGCATTTCTTGATGAT+GGG | + | chr4.1:38391402-38391421 | MS.gene08588:intron | 25.0% |
!! | CAGATATTTACTACACTTTT+TGG | + | chr4.1:38395012-38395031 | MS.gene08588:CDS | 25.0% |
!! | CATGATAGTTGTTATTCAAA+AGG | - | chr4.1:38392963-38392982 | None:intergenic | 25.0% |
!! | TAATTCTCAATGTTTTATGC+TGG | + | chr4.1:38392172-38392191 | MS.gene08588:intron | 25.0% |
!! | TAGTTTAGAACTAAGAATGT+AGG | + | chr4.1:38391527-38391546 | MS.gene08588:intron | 25.0% |
!! | TCTAATTCAATTTGCTTTCT+GGG | + | chr4.1:38394818-38394837 | MS.gene08588:intron | 25.0% |
!! | TTGAATTTGCGTTTGAAATT+AGG | + | chr4.1:38392589-38392608 | MS.gene08588:intron | 25.0% |
!!! | CTGCAATATAAATTTTTTGG+AGG | - | chr4.1:38391974-38391993 | None:intergenic | 25.0% |
!!! | GTATGTATGGTTTTAAATTG+TGG | + | chr4.1:38391448-38391467 | MS.gene08588:intron | 25.0% |
!!! | TATTGTATTGTGTTTTTAGG+TGG | + | chr4.1:38392210-38392229 | MS.gene08588:intron | 25.0% |
!!! | TGGCTGCAATATAAATTTTT+TGG | - | chr4.1:38391977-38391996 | None:intergenic | 25.0% |
AAAAATACTTGCTTCTCAAG+TGG | - | chr4.1:38392350-38392369 | None:intergenic | 30.0% | |
AAAATACTTGCTTCTCAAGT+GGG | - | chr4.1:38392349-38392368 | None:intergenic | 30.0% | |
ACAAAAGGAATGTGCTTAAT+TGG | + | chr4.1:38394013-38394032 | MS.gene08588:CDS | 30.0% | |
AGAATTAGGGTTTCAGAAAA+TGG | - | chr4.1:38392159-38392178 | None:intergenic | 30.0% | |
ATATTATAGTTGAACCCACT+TGG | + | chr4.1:38391668-38391687 | MS.gene08588:intron | 30.0% | |
ATGTACATAGATAGAAATGC+AGG | - | chr4.1:38393641-38393660 | None:intergenic | 30.0% | |
CAATTTGCATTTCTTGATGA+TGG | + | chr4.1:38391401-38391420 | MS.gene08588:intron | 30.0% | |
CTTGATATTGTCACAAAATG+GGG | + | chr4.1:38391490-38391509 | MS.gene08588:intron | 30.0% | |
GACAAAAAAAGAGATAAGCA+AGG | - | chr4.1:38393583-38393602 | None:intergenic | 30.0% | |
GATGTTGTGTATTAACTTTC+AGG | + | chr4.1:38393331-38393350 | MS.gene08588:intron | 30.0% | |
GATTTATGGAATAAGAAGAG+AGG | - | chr4.1:38394358-38394377 | None:intergenic | 30.0% | |
GGAATAGGTTAATGTATGTA+TGG | + | chr4.1:38391435-38391454 | MS.gene08588:intron | 30.0% | |
TATTAGGAATAGGTCAATGT+AGG | + | chr4.1:38391848-38391867 | MS.gene08588:intron | 30.0% | |
TGCAGAAACGAAAATACAAA+AGG | + | chr4.1:38393998-38394017 | MS.gene08588:CDS | 30.0% | |
TGGATGCTGATAAGAATTTA+TGG | + | chr4.1:38393690-38393709 | MS.gene08588:intron | 30.0% | |
TTAGTCAACATGTCCATATA+TGG | + | chr4.1:38393605-38393624 | MS.gene08588:intron | 30.0% | |
TTGTCATCAAAGGATCATAT+GGG | - | chr4.1:38393384-38393403 | None:intergenic | 30.0% | |
TTGTTCAACAATTTCTCACA+AGG | - | chr4.1:38391169-38391188 | None:intergenic | 30.0% | |
TTGTTGAGACATTATGAGTA+GGG | + | chr4.1:38392113-38392132 | MS.gene08588:intron | 30.0% | |
TTTAACCGTCCAATCTTAAT+AGG | - | chr4.1:38394526-38394545 | None:intergenic | 30.0% | |
TTTACCAAGCTTAAATCAGA+CGG | + | chr4.1:38394585-38394604 | MS.gene08588:intron | 30.0% | |
TTTGTCATCAAAGGATCATA+TGG | - | chr4.1:38393385-38393404 | None:intergenic | 30.0% | |
! | ACTTGTTTAGAGTGAGTTAA+CGG | + | chr4.1:38393059-38393078 | MS.gene08588:intron | 30.0% |
! | CTCTAATTCAATTTGCTTTC+TGG | + | chr4.1:38394817-38394836 | MS.gene08588:intron | 30.0% |
!! | ATGGGTTTTTGTTTAGGAAT+AGG | + | chr4.1:38391420-38391439 | MS.gene08588:intron | 30.0% |
!!! | ATCACCCATGTTTCTTTTTT+TGG | + | chr4.1:38391291-38391310 | MS.gene08588:intron | 30.0% |
!!! | TGAATGCAGGTTTTAAATTG+AGG | + | chr4.1:38392029-38392048 | MS.gene08588:intron | 30.0% |
!!! | TTGATGATGGGTTTTTGTTT+AGG | + | chr4.1:38391414-38391433 | MS.gene08588:intron | 30.0% |
AAATACTTGCTTCTCAAGTG+GGG | - | chr4.1:38392348-38392367 | None:intergenic | 35.0% | |
AATACAATCCCTCAAAACCA+GGG | - | chr4.1:38391832-38391851 | None:intergenic | 35.0% | |
AATACCTGGTTGACATGATT+TGG | + | chr4.1:38392274-38392293 | MS.gene08588:intron | 35.0% | |
AATTACAGAACCCAACTCAA+TGG | + | chr4.1:38393718-38393737 | MS.gene08588:intron | 35.0% | |
AATTAGCTGAACCATTGAGT+TGG | - | chr4.1:38393732-38393751 | None:intergenic | 35.0% | |
ACAGTCCTATTAAGATTGGA+CGG | + | chr4.1:38394518-38394537 | MS.gene08588:intron | 35.0% | |
ACATAGATAGAAATGCAGGA+TGG | - | chr4.1:38393637-38393656 | None:intergenic | 35.0% | |
AGGATGGTATAAGCCATATA+TGG | - | chr4.1:38393621-38393640 | None:intergenic | 35.0% | |
ATCAGCGAAGTTTCTTATCA+GGG | + | chr4.1:38393500-38393519 | MS.gene08588:CDS | 35.0% | |
ATCAGTGAATCTTTAACACC+AGG | - | chr4.1:38392619-38392638 | None:intergenic | 35.0% | |
ATCCAATCTATGAGGATTTC+TGG | + | chr4.1:38393869-38393888 | MS.gene08588:CDS | 35.0% | |
ATGTGAAATGGCCTTCATAT+GGG | - | chr4.1:38394963-38394982 | None:intergenic | 35.0% | |
ATTAGCTGAACCATTGAGTT+GGG | - | chr4.1:38393731-38393750 | None:intergenic | 35.0% | |
ATTCATAAACCCCCCAAAAA+AGG | - | chr4.1:38391608-38391627 | None:intergenic | 35.0% | |
ATTGCAGTACAATTGTTGAC+AGG | + | chr4.1:38394858-38394877 | MS.gene08588:intron | 35.0% | |
CAGATCACTTATATGCTGTT+TGG | - | chr4.1:38393308-38393327 | None:intergenic | 35.0% | |
CTGCAAATTAGAGCAAAATG+TGG | + | chr4.1:38391906-38391925 | MS.gene08588:intron | 35.0% | |
GAGCAAAATGTGGATAAATG+AGG | + | chr4.1:38391916-38391935 | MS.gene08588:intron | 35.0% | |
GTCTTTATCTCTTGGAAAGA+GGG | + | chr4.1:38393549-38393568 | MS.gene08588:CDS | 35.0% | |
GTGTAAGAGAGTTCATGATT+GGG | + | chr4.1:38391023-38391042 | MS.gene08588:CDS | 35.0% | |
GTGTAGTAAATATCTGTCTG+TGG | - | chr4.1:38395008-38395027 | None:intergenic | 35.0% | |
GTTATGAAAATGCATGCAGA+AGG | - | chr4.1:38394127-38394146 | None:intergenic | 35.0% | |
GTTGTTGAGACATTATGAGT+AGG | + | chr4.1:38392112-38392131 | MS.gene08588:intron | 35.0% | |
GTTTCTTTACTTGCTTTCTC+AGG | + | chr4.1:38391259-38391278 | MS.gene08588:CDS | 35.0% | |
TAAGAAGAGAGGAATATGAC+AGG | - | chr4.1:38394347-38394366 | None:intergenic | 35.0% | |
TAATACAATCCCTCAAAACC+AGG | - | chr4.1:38391833-38391852 | None:intergenic | 35.0% | |
TAGAAGAAACCAAGAAGTCT+AGG | - | chr4.1:38393481-38393500 | None:intergenic | 35.0% | |
TATCAGCATCCATCTAACTA+GGG | - | chr4.1:38393682-38393701 | None:intergenic | 35.0% | |
TATCAGCGAAGTTTCTTATC+AGG | + | chr4.1:38393499-38393518 | MS.gene08588:CDS | 35.0% | |
TATGTGAAATGGCCTTCATA+TGG | - | chr4.1:38394964-38394983 | None:intergenic | 35.0% | |
TCAACAATGCCTCAAACTAA+GGG | - | chr4.1:38392558-38392577 | None:intergenic | 35.0% | |
TGAGGGATTGTATTAGGAAT+AGG | + | chr4.1:38391838-38391857 | MS.gene08588:intron | 35.0% | |
TGCACAAAATCAGTCATTGA+CGG | - | chr4.1:38394907-38394926 | None:intergenic | 35.0% | |
TGTAAGAGAGTTCATGATTG+GGG | + | chr4.1:38391024-38391043 | MS.gene08588:CDS | 35.0% | |
TGTCTTTATCTCTTGGAAAG+AGG | + | chr4.1:38393548-38393567 | MS.gene08588:CDS | 35.0% | |
TGTGTAAGAGAGTTCATGAT+TGG | + | chr4.1:38391022-38391041 | MS.gene08588:CDS | 35.0% | |
TTAATACCTGCAAGTCTATC+AGG | - | chr4.1:38392835-38392854 | None:intergenic | 35.0% | |
TTATCAGCATCCATCTAACT+AGG | - | chr4.1:38393683-38393702 | None:intergenic | 35.0% | |
TTCAACAATGCCTCAAACTA+AGG | - | chr4.1:38392559-38392578 | None:intergenic | 35.0% | |
TTGATTACTTATGATCTGCC+TGG | + | chr4.1:38392658-38392677 | MS.gene08588:CDS | 35.0% | |
TTGCAGTACAATTGTTGACA+GGG | + | chr4.1:38394859-38394878 | MS.gene08588:intron | 35.0% | |
TTGTGTCACATCAATAGAAC+AGG | + | chr4.1:38393113-38393132 | MS.gene08588:intron | 35.0% | |
! | AAAAGAATTTTACACCGCTG+AGG | - | chr4.1:38394407-38394426 | None:intergenic | 35.0% |
! | AAAGAATTTTACACCGCTGA+GGG | - | chr4.1:38394406-38394425 | None:intergenic | 35.0% |
! | ATTTTCGTTTCTGCAACTTG+AGG | - | chr4.1:38393993-38394012 | None:intergenic | 35.0% |
! | CGTTTGAAATTAGGAATTCC+TGG | + | chr4.1:38392598-38392617 | MS.gene08588:intron | 35.0% |
! | CTACTTCTAAAGAAATGCTG+AGG | - | chr4.1:38395059-38395078 | None:intergenic | 35.0% |
! | GAATGTGCTTAATTGGCTTA+AGG | + | chr4.1:38394020-38394039 | MS.gene08588:CDS | 35.0% |
! | GTGGCATTGAAGTTAAACAT+GGG | - | chr4.1:38391579-38391598 | None:intergenic | 35.0% |
! | TGGTGTTAAAGATTCACTGA+TGG | + | chr4.1:38392618-38392637 | MS.gene08588:CDS | 35.0% |
! | TGTGGCATTGAAGTTAAACA+TGG | - | chr4.1:38391580-38391599 | None:intergenic | 35.0% |
! | TTTACAAAAGTTGGTTCCGA+GGG | + | chr4.1:38393773-38393792 | MS.gene08588:intron | 35.0% |
!!! | ATGCCACATGTTTCCTTTTT+TGG | + | chr4.1:38391592-38391611 | MS.gene08588:intron | 35.0% |
!!! | GTTGACAAGTTTTGGATCAT+TGG | + | chr4.1:38392763-38392782 | MS.gene08588:CDS | 35.0% |
!!! | TGCCACATGTTTCCTTTTTT+GGG | + | chr4.1:38391593-38391612 | MS.gene08588:intron | 35.0% |
!!! | TGGTTTTGAGGGATTGTATT+AGG | + | chr4.1:38391832-38391851 | MS.gene08588:intron | 35.0% |
AAATTGTAGTTGTGATGCCG+AGG | + | chr4.1:38391942-38391961 | MS.gene08588:intron | 40.0% | |
ACAAAATCAGTCATTGACGG+GGG | - | chr4.1:38394904-38394923 | None:intergenic | 40.0% | |
ACAGTCTACAACTGCAATTG+TGG | - | chr4.1:38391997-38392016 | None:intergenic | 40.0% | |
AGTTTCTTATCAGGGAAGCA+TGG | + | chr4.1:38393508-38393527 | MS.gene08588:CDS | 40.0% | |
ATAAAGACCCACTTCATGCT+TGG | + | chr4.1:38391221-38391240 | MS.gene08588:CDS | 40.0% | |
ATAGTTGAACCCACTTGGAT+TGG | + | chr4.1:38391673-38391692 | MS.gene08588:intron | 40.0% | |
ATCAACCACTAAAGTCAGAC+AGG | - | chr4.1:38392066-38392085 | None:intergenic | 40.0% | |
ATGACAAACCAAGCATGAAG+TGG | - | chr4.1:38391232-38391251 | None:intergenic | 40.0% | |
CAAGAAGTAGTAGCAAGTAG+TGG | + | chr4.1:38395117-38395136 | MS.gene08588:CDS | 40.0% | |
CAATCTTAATAGGACTGTCC+AGG | - | chr4.1:38394516-38394535 | None:intergenic | 40.0% | |
CACAAAATCAGTCATTGACG+GGG | - | chr4.1:38394905-38394924 | None:intergenic | 40.0% | |
CGGCATCACAACTACAATTT+GGG | - | chr4.1:38391942-38391961 | None:intergenic | 40.0% | |
CTCACTTGCCATATGTGTAT+TGG | - | chr4.1:38394087-38394106 | None:intergenic | 40.0% | |
CTCATACTTTCCTTTCCTCT+CGG | + | chr4.1:38392474-38392493 | MS.gene08588:CDS | 40.0% | |
CTCTCTTCGTTTGTCATCAA+AGG | - | chr4.1:38393394-38393413 | None:intergenic | 40.0% | |
CTGGACAGTCCTATTAAGAT+TGG | + | chr4.1:38394514-38394533 | MS.gene08588:intron | 40.0% | |
GACGATTCCAGATTTCGTTT+GGG | - | chr4.1:38392706-38392725 | None:intergenic | 40.0% | |
GATGGAAGATCCAATCTATG+AGG | + | chr4.1:38393861-38393880 | MS.gene08588:CDS | 40.0% | |
GATTATCCCCATGCCAAATT+CGG | + | chr4.1:38391751-38391770 | MS.gene08588:intron | 40.0% | |
GATTCACTGATGGAAGAGTT+TGG | + | chr4.1:38392628-38392647 | MS.gene08588:CDS | 40.0% | |
GCACAAAATCAGTCATTGAC+GGG | - | chr4.1:38394906-38394925 | None:intergenic | 40.0% | |
GGGATGTGGAAGAATCAATT+AGG | + | chr4.1:38393896-38393915 | MS.gene08588:CDS | 40.0% | |
GTACAATTGTTGACAGGGAA+TGG | + | chr4.1:38394864-38394883 | MS.gene08588:intron | 40.0% | |
GTACACAAACTCCCATATGA+AGG | + | chr4.1:38394949-38394968 | MS.gene08588:CDS | 40.0% | |
GTGGAAGAATCAATTAGGCA+AGG | + | chr4.1:38393901-38393920 | MS.gene08588:CDS | 40.0% | |
TAAATCAGACGGTCTGCATT+TGG | + | chr4.1:38394596-38394615 | MS.gene08588:intron | 40.0% | |
TACATACCTGATAGACTTGC+AGG | + | chr4.1:38392826-38392845 | MS.gene08588:CDS | 40.0% | |
TATCTCTTGGAAAGAGGGTA+AGG | + | chr4.1:38393554-38393573 | MS.gene08588:intron | 40.0% | |
TATGCCATGTATCTTCCATC+CGG | - | chr4.1:38392404-38392423 | None:intergenic | 40.0% | |
TCAACCAAATCATGTCAACC+AGG | - | chr4.1:38392281-38392300 | None:intergenic | 40.0% | |
TCAACCACTAAAGTCAGACA+GGG | - | chr4.1:38392065-38392084 | None:intergenic | 40.0% | |
TCACGTTAACCCTAGTTAGA+TGG | + | chr4.1:38393670-38393689 | MS.gene08588:intron | 40.0% | |
TCAGTGAGAATAAGTGTGTC+TGG | + | chr4.1:38393141-38393160 | MS.gene08588:intron | 40.0% | |
TCAGTGCTTTGTCCTGAAAA+AGG | - | chr4.1:38393843-38393862 | None:intergenic | 40.0% | |
TCGGCATCACAACTACAATT+TGG | - | chr4.1:38391943-38391962 | None:intergenic | 40.0% | |
TCTGCAACTTGAGGTCTAAA+AGG | - | chr4.1:38393984-38394003 | None:intergenic | 40.0% | |
TGAAGTGGGTCTTTATCTTC+AGG | - | chr4.1:38391217-38391236 | None:intergenic | 40.0% | |
TGAATTCAATTGACCTTCCC+TGG | + | chr4.1:38391812-38391831 | MS.gene08588:intron | 40.0% | |
TGACAAACCAAGCATGAAGT+GGG | - | chr4.1:38391231-38391250 | None:intergenic | 40.0% | |
TGACGATTCCAGATTTCGTT+TGG | - | chr4.1:38392707-38392726 | None:intergenic | 40.0% | |
TGAGACATTATGAGTAGGGT+CGG | + | chr4.1:38392117-38392136 | MS.gene08588:intron | 40.0% | |
TGCCAGAAATCCTCATAGAT+TGG | - | chr4.1:38393874-38393893 | None:intergenic | 40.0% | |
TGGAAGATACATGGCATACA+AGG | + | chr4.1:38392406-38392425 | MS.gene08588:CDS | 40.0% | |
TTCTCGGTCCAATACACATA+TGG | + | chr4.1:38394076-38394095 | MS.gene08588:CDS | 40.0% | |
! | ACTGAAACTCAGGAGTATAC+GGG | + | chr4.1:38394051-38394070 | MS.gene08588:CDS | 40.0% |
! | ACTTATGATCTGCCTGGTTT+TGG | + | chr4.1:38392664-38392683 | MS.gene08588:CDS | 40.0% |
! | AGAAGCATACAGCTCAATTG+AGG | + | chr4.1:38394442-38394461 | MS.gene08588:intron | 40.0% |
! | ATACAAGGAGCAAGGTGTTT+CGG | + | chr4.1:38392421-38392440 | MS.gene08588:CDS | 40.0% |
! | CACTGAAACTCAGGAGTATA+CGG | + | chr4.1:38394050-38394069 | MS.gene08588:CDS | 40.0% |
! | CAGATCTCATTGCCTTTTTC+AGG | + | chr4.1:38393828-38393847 | MS.gene08588:intron | 40.0% |
! | GATGGTAATGAGCGGATTTA+TGG | - | chr4.1:38394372-38394391 | None:intergenic | 40.0% |
! | GGCAATTTTCACTGAAACTC+AGG | + | chr4.1:38394041-38394060 | MS.gene08588:CDS | 40.0% |
! | GTTTACAAAAGTTGGTTCCG+AGG | + | chr4.1:38393772-38393791 | MS.gene08588:intron | 40.0% |
! | TGGATCATTGGTTACTCAAG+TGG | + | chr4.1:38392775-38392794 | MS.gene08588:CDS | 40.0% |
! | TTGCTGTTCAAGTTCAACGT+TGG | - | chr4.1:38395100-38395119 | None:intergenic | 40.0% |
! | TTGTTTCCACCCTTAGTTTG+AGG | + | chr4.1:38392546-38392565 | MS.gene08588:intron | 40.0% |
! | TTTTCGTGTCCATTTGTTCC+AGG | - | chr4.1:38393425-38393444 | None:intergenic | 40.0% |
!! | AAGTTCAACGTTGGCTTCTA+GGG | - | chr4.1:38395091-38395110 | None:intergenic | 40.0% |
!! | CTATGAGGATTTCTGGCAAA+GGG | + | chr4.1:38393876-38393895 | MS.gene08588:CDS | 40.0% |
!! | GTAGGCATGGTTCTAAATTG+CGG | + | chr4.1:38391866-38391885 | MS.gene08588:intron | 40.0% |
!! | TCTATGAGGATTTCTGGCAA+AGG | + | chr4.1:38393875-38393894 | MS.gene08588:CDS | 40.0% |
!!! | CACATGTTTCCTTTTTTGGG+GGG | + | chr4.1:38391596-38391615 | MS.gene08588:intron | 40.0% |
!!! | CCACATGTTTCCTTTTTTGG+GGG | + | chr4.1:38391595-38391614 | MS.gene08588:intron | 40.0% |
!!! | CTCTTGGTGTTGACAAGTTT+TGG | + | chr4.1:38392755-38392774 | MS.gene08588:CDS | 40.0% |
!!! | GCCACATGTTTCCTTTTTTG+GGG | + | chr4.1:38391594-38391613 | MS.gene08588:intron | 40.0% |
!!! | TCGTTTTTAGCTGATGCTCT+TGG | + | chr4.1:38392739-38392758 | MS.gene08588:CDS | 40.0% |
!!! | TTTTCAGGACAAAGCACTGA+TGG | + | chr4.1:38393843-38393862 | MS.gene08588:intron | 40.0% |
!!! | TTTTTTGGAGGTCTTCACCT+CGG | - | chr4.1:38391962-38391981 | None:intergenic | 40.0% |
AAAGAAATGCTGAGGCTGAG+AGG | - | chr4.1:38395051-38395070 | None:intergenic | 45.0% | |
AAAGCAGCTTCCTCCACAAA+GGG | - | chr4.1:38393937-38393956 | None:intergenic | 45.0% | |
AAATGCGAAACCCTTTGTGG+AGG | + | chr4.1:38393924-38393943 | MS.gene08588:CDS | 45.0% | |
AAGAAATGCTGAGGCTGAGA+GGG | - | chr4.1:38395050-38395069 | None:intergenic | 45.0% | |
AAGTGGAAGCAAGCATGCTT+GGG | + | chr4.1:38392792-38392811 | MS.gene08588:CDS | 45.0% | |
ACAATGCCTCAAACTAAGGG+TGG | - | chr4.1:38392555-38392574 | None:intergenic | 45.0% | |
ACAGGGAATGGATGACAAAG+TGG | + | chr4.1:38394876-38394895 | MS.gene08588:intron | 45.0% | |
AGGAAATGCGAAACCCTTTG+TGG | + | chr4.1:38393921-38393940 | MS.gene08588:CDS | 45.0% | |
AGGATCATATGGGTTCACCA+TGG | - | chr4.1:38393374-38393393 | None:intergenic | 45.0% | |
AGGTGGCTGTCTTTATCTCT+TGG | + | chr4.1:38393541-38393560 | MS.gene08588:CDS | 45.0% | |
ATCATATGGGTTCACCATGG+GGG | - | chr4.1:38393371-38393390 | None:intergenic | 45.0% | |
ATCTCGATTCTCTGCTGTCA+GGG | + | chr4.1:38394465-38394484 | MS.gene08588:intron | 45.0% | |
ATTATGAGTAGGGTCGGTCT+AGG | + | chr4.1:38392123-38392142 | MS.gene08588:intron | 45.0% | |
CAACCACTAAAGTCAGACAG+GGG | - | chr4.1:38392064-38392083 | None:intergenic | 45.0% | |
CAGACCGTCTGATTTAAGCT+TGG | - | chr4.1:38394592-38394611 | None:intergenic | 45.0% | |
CCACAACGTGAATGCAATTG+AGG | - | chr4.1:38392093-38392112 | None:intergenic | 45.0% | |
CCCCCAAAAAAGGAAACATG+TGG | - | chr4.1:38391598-38391617 | None:intergenic | 45.0% | |
CCTCAATTGCATTCACGTTG+TGG | + | chr4.1:38392090-38392109 | MS.gene08588:intron | 45.0% | |
CGAAGCTTTCCTAGACTTCT+TGG | + | chr4.1:38393469-38393488 | MS.gene08588:CDS | 45.0% | |
GACGAAGAACCTGGAACAAA+TGG | + | chr4.1:38393413-38393432 | MS.gene08588:CDS | 45.0% | |
GATCATATGGGTTCACCATG+GGG | - | chr4.1:38393372-38393391 | None:intergenic | 45.0% | |
GGAATAGGTCAATGTAGGCA+TGG | + | chr4.1:38391853-38391872 | MS.gene08588:intron | 45.0% | |
GGATCATATGGGTTCACCAT+GGG | - | chr4.1:38393373-38393392 | None:intergenic | 45.0% | |
TACATGGCATACAAGGAGCA+AGG | + | chr4.1:38392413-38392432 | MS.gene08588:CDS | 45.0% | |
TCCTCATCCCAAACGAAATC+TGG | + | chr4.1:38392696-38392715 | MS.gene08588:CDS | 45.0% | |
TGCTTTGCAGGTCTCGAATT+GGG | + | chr4.1:38393951-38393970 | MS.gene08588:CDS | 45.0% | |
! | AATTTTACACCGCTGAGGGA+AGG | - | chr4.1:38394402-38394421 | None:intergenic | 45.0% |
! | ATTTTACACCGCTGAGGGAA+GGG | - | chr4.1:38394401-38394420 | None:intergenic | 45.0% |
! | CAGGAGTATACGGGATTTCT+CGG | + | chr4.1:38394060-38394079 | MS.gene08588:CDS | 45.0% |
! | CGAGAGGAAAGGAAAGTATG+AGG | - | chr4.1:38392476-38392495 | None:intergenic | 45.0% |
! | TAGCTAGTCTGCTCAATACC+TGG | + | chr4.1:38392260-38392279 | MS.gene08588:intron | 45.0% |
! | TCCAGATTTCGTTTGGGATG+AGG | - | chr4.1:38392700-38392719 | None:intergenic | 45.0% |
! | TTCCATCCGGAAGCATAATG+CGG | - | chr4.1:38392391-38392410 | None:intergenic | 45.0% |
!! | ACGTTGGCTTCTAGGGTAAT+TGG | - | chr4.1:38395084-38395103 | None:intergenic | 45.0% |
!! | ATGGTTCTAAATTGCGGCTG+TGG | + | chr4.1:38391872-38391891 | MS.gene08588:intron | 45.0% |
!! | CAAGTTCAACGTTGGCTTCT+AGG | - | chr4.1:38395092-38395111 | None:intergenic | 45.0% |
!!! | ATTGACCTTCCCTGGTTTTG+AGG | + | chr4.1:38391820-38391839 | MS.gene08588:intron | 45.0% |
!!! | TTGACCTTCCCTGGTTTTGA+GGG | + | chr4.1:38391821-38391840 | MS.gene08588:intron | 45.0% |
ACGAAGAGAGACGAAGAACC+TGG | + | chr4.1:38393404-38393423 | MS.gene08588:CDS | 50.0% | |
AGCATGGTCAGATTGACAGG+TGG | + | chr4.1:38393524-38393543 | MS.gene08588:CDS | 50.0% | |
AGGTCAAAAGCCAACACCAC+CGG | - | chr4.1:38391700-38391719 | None:intergenic | 50.0% | |
AGTTTGTGTACTGCAGCTCC+AGG | - | chr4.1:38394940-38394959 | None:intergenic | 50.0% | |
ATAATGCGGGTAGCACTAGC+AGG | - | chr4.1:38392377-38392396 | None:intergenic | 50.0% | |
ATCCCCATGCCAAATTCGGT+GGG | + | chr4.1:38391755-38391774 | MS.gene08588:intron | 50.0% | |
CAAAGCAGCTTCCTCCACAA+AGG | - | chr4.1:38393938-38393957 | None:intergenic | 50.0% | |
CAAGTGGAAGCAAGCATGCT+TGG | + | chr4.1:38392791-38392810 | MS.gene08588:CDS | 50.0% | |
CAATCCCTCAAAACCAGGGA+AGG | - | chr4.1:38391828-38391847 | None:intergenic | 50.0% | |
CCAAACTAGCCCACCGAATT+TGG | - | chr4.1:38391767-38391786 | None:intergenic | 50.0% | |
CTGCTTTGCAGGTCTCGAAT+TGG | + | chr4.1:38393950-38393969 | MS.gene08588:CDS | 50.0% | |
CTTGGAGTGTGCTCTTCTCA+AGG | + | chr4.1:38391718-38391737 | MS.gene08588:intron | 50.0% | |
GATCTCGATTCTCTGCTGTC+AGG | + | chr4.1:38394464-38394483 | MS.gene08588:intron | 50.0% | |
GCTTCCGGATGGAAGATACA+TGG | + | chr4.1:38392397-38392416 | MS.gene08588:CDS | 50.0% | |
GCTTTGCAGGTCTCGAATTG+GGG | + | chr4.1:38393952-38393971 | MS.gene08588:CDS | 50.0% | |
GTGTGCTCTTCTCAAGGTCT+CGG | + | chr4.1:38391724-38391743 | MS.gene08588:intron | 50.0% | |
TAGCCCACCGAATTTGGCAT+GGG | - | chr4.1:38391761-38391780 | None:intergenic | 50.0% | |
TATCCCCATGCCAAATTCGG+TGG | + | chr4.1:38391754-38391773 | MS.gene08588:intron | 50.0% | |
TCATGTGCGTGAGCGATAGA+GGG | - | chr4.1:38394667-38394686 | None:intergenic | 50.0% | |
TGACACTGACACGTAGAGAC+CGG | - | chr4.1:38393234-38393253 | None:intergenic | 50.0% | |
TGCTACCCGCATTATGCTTC+CGG | + | chr4.1:38392382-38392401 | MS.gene08588:CDS | 50.0% | |
TGTGCTCTTCTCAAGGTCTC+GGG | + | chr4.1:38391725-38391744 | MS.gene08588:intron | 50.0% | |
TTCATGTGCGTGAGCGATAG+AGG | - | chr4.1:38394668-38394687 | None:intergenic | 50.0% | |
TTTGTGCATCGCGTACTACC+TGG | + | chr4.1:38394919-38394938 | MS.gene08588:CDS | 50.0% | |
! | AAAGTTGGTTCCGAGGGCAT+AGG | + | chr4.1:38393779-38393798 | MS.gene08588:intron | 50.0% |
! | CTTGAGAAGAGCACACTCCA+AGG | - | chr4.1:38391720-38391739 | None:intergenic | 50.0% |
! | GCTTGTTAACGGCATGACCA+GGG | - | chr4.1:38394494-38394513 | None:intergenic | 50.0% |
! | GGAAGCATGGTCAGATTGAC+AGG | + | chr4.1:38393521-38393540 | MS.gene08588:CDS | 50.0% |
! | GGGAAGGAGATGGTAATGAG+CGG | - | chr4.1:38394380-38394399 | None:intergenic | 50.0% |
! | TCCATCCGGAAGCATAATGC+GGG | - | chr4.1:38392390-38392409 | None:intergenic | 50.0% |
! | TTTTACACCGCTGAGGGAAG+GGG | - | chr4.1:38394400-38394419 | None:intergenic | 50.0% |
!! | CCAAATTCGGTGGGCTAGTT+TGG | + | chr4.1:38391764-38391783 | MS.gene08588:intron | 50.0% |
!! | GGACTGTCCAGGCTTGTTAA+CGG | - | chr4.1:38394505-38394524 | None:intergenic | 50.0% |
!! | GGATTTCTGGCAAAGGGATG+TGG | + | chr4.1:38393882-38393901 | MS.gene08588:CDS | 50.0% |
!! | TGAACCCACTTGGATTGGTC+CGG | + | chr4.1:38391678-38391697 | MS.gene08588:intron | 50.0% |
!!! | ACACTTTTTGGAACCCCGCA+AGG | + | chr4.1:38395024-38395043 | MS.gene08588:CDS | 50.0% |
!!! | GTGGTGTTGGCTTTTGACCT+TGG | + | chr4.1:38391700-38391719 | MS.gene08588:intron | 50.0% |
AACCTGCAAGCCGAGAGGAA+AGG | - | chr4.1:38392487-38392506 | None:intergenic | 55.0% | |
ACCACCGGACCAATCCAAGT+GGG | - | chr4.1:38391685-38391704 | None:intergenic | 55.0% | |
ACCCGCATTATGCTTCCGGA+TGG | + | chr4.1:38392386-38392405 | MS.gene08588:CDS | 55.0% | |
AGCCCACCGAATTTGGCATG+GGG | - | chr4.1:38391760-38391779 | None:intergenic | 55.0% | |
CAAACAACCTGCAAGCCGAG+AGG | - | chr4.1:38392492-38392511 | None:intergenic | 55.0% | |
CACTAAAGTCAGACAGGGGC+AGG | - | chr4.1:38392060-38392079 | None:intergenic | 55.0% | |
CTAGCCCACCGAATTTGGCA+TGG | - | chr4.1:38391762-38391781 | None:intergenic | 55.0% | |
CTGCCCCTGTCTGACTTTAG+TGG | + | chr4.1:38392058-38392077 | MS.gene08588:intron | 55.0% | |
CTTGGGATAGCCTATGCCCT+CGG | - | chr4.1:38393792-38393811 | None:intergenic | 55.0% | |
GGATCGCTCTCACCAAAACC+AGG | - | chr4.1:38392679-38392698 | None:intergenic | 55.0% | |
GGTCATGCCGTTAACAAGCC+TGG | + | chr4.1:38394495-38394514 | MS.gene08588:intron | 55.0% | |
GTTCACCATGGGGGCAAACA+TGG | - | chr4.1:38393362-38393381 | None:intergenic | 55.0% | |
TGTCAGTGTCATGTCGCGTC+TGG | + | chr4.1:38393243-38393262 | MS.gene08588:intron | 55.0% | |
! | TGTGGAGGAAGCTGCTTTGC+AGG | + | chr4.1:38393939-38393958 | MS.gene08588:CDS | 55.0% |
! | TTCCTTTCCTCTCGGCTTGC+AGG | + | chr4.1:38392482-38392501 | MS.gene08588:CDS | 55.0% |
!! | GGCTTGTTAACGGCATGACC+AGG | - | chr4.1:38394495-38394514 | None:intergenic | 55.0% |
!! | TTGGATTGGTCCGGTGGTGT+TGG | + | chr4.1:38391687-38391706 | MS.gene08588:intron | 55.0% |
CACCACCGGACCAATCCAAG+TGG | - | chr4.1:38391686-38391705 | None:intergenic | 60.0% | |
CTCTGCTGTCAGGGAATCCC+TGG | + | chr4.1:38394474-38394493 | MS.gene08588:intron | 60.0% | |
CTGAGGGAAGGGGAAGGAGA+TGG | - | chr4.1:38394390-38394409 | None:intergenic | 60.0% | |
TCTCCTTCCCCTTCCCTCAG+CGG | + | chr4.1:38394390-38394409 | MS.gene08588:intron | 60.0% | |
TGCTGCCATGTTTGCCCCCA+TGG | + | chr4.1:38393354-38393373 | MS.gene08588:CDS | 60.0% | |
!! | ACCCACTTGGATTGGTCCGG+TGG | + | chr4.1:38391681-38391700 | MS.gene08588:intron | 60.0% |
ACACCGCTGAGGGAAGGGGA+AGG | - | chr4.1:38394396-38394415 | None:intergenic | 65.0% | |
CTGAGGCTGAGAGGGCCTTG+CGG | - | chr4.1:38395042-38395061 | None:intergenic | 65.0% | |
TGAGGCTGAGAGGGCCTTGC+GGG | - | chr4.1:38395041-38395060 | None:intergenic | 65.0% | |
GAGGCTGAGAGGGCCTTGCG+GGG | - | chr4.1:38395040-38395059 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 38390989 | 38395158 | 38390989 | ID=MS.gene08588 |
chr4.1 | mRNA | 38390989 | 38395158 | 38390989 | ID=MS.gene08588.t1;Parent=MS.gene08588 |
chr4.1 | exon | 38390989 | 38391280 | 38390989 | ID=MS.gene08588.t1.exon1;Parent=MS.gene08588.t1 |
chr4.1 | CDS | 38390989 | 38391280 | 38390989 | ID=cds.MS.gene08588.t1;Parent=MS.gene08588.t1 |
chr4.1 | exon | 38392312 | 38392503 | 38392312 | ID=MS.gene08588.t1.exon2;Parent=MS.gene08588.t1 |
chr4.1 | CDS | 38392312 | 38392503 | 38392312 | ID=cds.MS.gene08588.t1;Parent=MS.gene08588.t1 |
chr4.1 | exon | 38392611 | 38392847 | 38392611 | ID=MS.gene08588.t1.exon3;Parent=MS.gene08588.t1 |
chr4.1 | CDS | 38392611 | 38392847 | 38392611 | ID=cds.MS.gene08588.t1;Parent=MS.gene08588.t1 |
chr4.1 | exon | 38393353 | 38393570 | 38393353 | ID=MS.gene08588.t1.exon4;Parent=MS.gene08588.t1 |
chr4.1 | CDS | 38393353 | 38393570 | 38393353 | ID=cds.MS.gene08588.t1;Parent=MS.gene08588.t1 |
chr4.1 | exon | 38393850 | 38394101 | 38393850 | ID=MS.gene08588.t1.exon5;Parent=MS.gene08588.t1 |
chr4.1 | CDS | 38393850 | 38394101 | 38393850 | ID=cds.MS.gene08588.t1;Parent=MS.gene08588.t1 |
chr4.1 | exon | 38394880 | 38395158 | 38394880 | ID=MS.gene08588.t1.exon6;Parent=MS.gene08588.t1 |
chr4.1 | CDS | 38394880 | 38395158 | 38394880 | ID=cds.MS.gene08588.t1;Parent=MS.gene08588.t1 |
Gene Sequence |
Protein sequence |