AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08588


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08588.t1 MTR_4g060900 97.546 489 12 0 1 489 1 489 0.0 998
MS.gene08588.t1 MTR_7g100780 57.466 442 178 4 16 455 56 489 0.0 554
MS.gene08588.t1 MTR_4g053620 32.456 342 180 10 104 434 30 331 6.66e-43 156
MS.gene08588.t1 MTR_1g060150 31.065 338 197 8 119 450 68 375 3.01e-40 149
MS.gene08588.t1 MTR_3g104770 32.087 321 174 11 123 434 129 414 4.65e-40 150
MS.gene08588.t1 MTR_2g086290 30.275 327 196 9 119 443 36 332 4.42e-39 145
MS.gene08588.t1 MTR_1g060130 29.223 373 221 10 86 450 38 375 6.48e-39 145
MS.gene08588.t1 MTR_2g086300 31.437 334 189 11 122 449 47 346 5.39e-38 142
MS.gene08588.t1 MTR_1g050458 28.972 321 187 8 119 430 36 324 2.21e-35 135
MS.gene08588.t1 MTR_1g050458 44.444 135 72 2 119 250 36 170 6.22e-29 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08588.t1 AT3G09690 60.089 451 171 3 9 457 57 500 0.0 585
MS.gene08588.t1 AT3G09690 60.089 451 171 3 9 457 57 500 0.0 585
MS.gene08588.t1 AT5G02970 56.182 461 193 3 13 471 58 511 0.0 556
MS.gene08588.t1 AT5G22460 28.531 354 210 8 88 430 1 322 1.27e-40 149
MS.gene08588.t1 AT5G22460 28.531 354 210 8 88 430 1 322 1.27e-40 149
MS.gene08588.t1 AT5G22460 28.531 354 210 8 88 430 1 322 1.27e-40 149
MS.gene08588.t1 AT3G44510 32.424 330 184 12 124 444 8 307 3.82e-39 145
MS.gene08588.t1 AT3G54240 27.893 337 212 6 119 452 40 348 6.54e-39 145
MS.gene08588.t1 AT1G74280 29.358 327 179 6 119 430 56 345 7.12e-38 142
MS.gene08588.t1 AT2G36290 30.636 346 206 9 93 430 8 327 5.64e-37 139
MS.gene08588.t1 AT2G36290 30.460 348 204 10 93 430 22 341 7.98e-37 139
MS.gene08588.t1 AT1G08310 30.145 345 176 10 119 444 5 303 7.90e-36 135
MS.gene08588.t1 AT3G44510 43.094 181 85 6 124 296 8 178 1.30e-35 132
MS.gene08588.t1 AT1G08310 29.971 347 177 10 119 444 5 306 2.21e-35 134
MS.gene08588.t1 AT1G74290 29.595 321 187 7 119 430 56 346 1.73e-33 130
MS.gene08588.t1 AT1G74300 29.012 324 184 6 119 430 39 328 3.08e-33 129
MS.gene08588.t1 AT3G03240 28.481 316 185 9 122 430 35 316 4.93e-32 125
MS.gene08588.t1 AT3G48410 27.249 389 211 12 82 448 33 371 3.88e-30 121
MS.gene08588.t1 AT1G08310 47.368 133 68 2 119 250 5 136 5.15e-30 117
MS.gene08588.t1 AT3G48410 27.688 372 199 11 82 431 75 398 6.06e-30 121
MS.gene08588.t1 AT3G03230 27.097 310 196 6 122 430 35 315 2.02e-29 118
MS.gene08588.t1 AT1G74300 27.376 263 147 5 178 430 1 229 2.37e-22 96.3

Find 115 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCATTGTTAAGAAATT+TGG 0.136021 4.1:+38391118 MS.gene08588:CDS
ACAAAAGGAATGTGCTTAAT+TGG 0.161569 4.1:+38394013 MS.gene08588:CDS
TATCAGCGAAGTTTCTTATC+AGG 0.205500 4.1:+38393499 MS.gene08588:CDS
CTCTTGGTGTTGACAAGTTT+TGG 0.207857 4.1:+38392755 MS.gene08588:CDS
CAAGTTCAACGTTGGCTTCT+AGG 0.207888 4.1:-38395089 None:intergenic
ATCCAATCTATGAGGATTTC+TGG 0.211014 4.1:+38393869 MS.gene08588:CDS
TGTGGAGGAAGCTGCTTTGC+AGG 0.230425 4.1:+38393939 MS.gene08588:CDS
TTCCTTTCCTCTCGGCTTGC+AGG 0.230918 4.1:+38392482 MS.gene08588:CDS
TGCTTTGCAGGTCTCGAATT+GGG 0.231694 4.1:+38393951 MS.gene08588:CDS
CACTGAAACTCAGGAGTATA+CGG 0.248631 4.1:+38394050 MS.gene08588:CDS
CGAAGCTTTCCTAGACTTCT+TGG 0.254206 4.1:+38393469 MS.gene08588:CDS
ACGTTGGCTTCTAGGGTAAT+TGG 0.261598 4.1:-38395081 None:intergenic
CTAACTGTAGAATTCTTAAA+AGG 0.264307 4.1:+38391055 MS.gene08588:CDS
GTTAAGAAATTTGGAAAGAT+TGG 0.278897 4.1:+38391127 MS.gene08588:CDS
ACTTATGATCTGCCTGGTTT+TGG 0.280877 4.1:+38392664 MS.gene08588:CDS
TGAGGCTGAGAGGGCCTTGC+GGG 0.293815 4.1:-38395038 None:intergenic
TCCTCATCCCAAACGAAATC+TGG 0.315816 4.1:+38392696 MS.gene08588:CDS
TTAATACCTGCAAGTCTATC+AGG 0.327430 4.1:-38392832 None:intergenic
TGACGATTCCAGATTTCGTT+TGG 0.334193 4.1:-38392704 None:intergenic
TCTGCAACTTGAGGTCTAAA+AGG 0.346212 4.1:-38393981 None:intergenic
CTGCTTTGCAGGTCTCGAAT+TGG 0.353135 4.1:+38393950 MS.gene08588:CDS
CGTTTGAAATTAGGAATTCC+TGG 0.355664 4.1:+38392598 MS.gene08588:intron
TACATACCTGATAGACTTGC+AGG 0.361619 4.1:+38392826 MS.gene08588:CDS
TGCTACCCGCATTATGCTTC+CGG 0.364526 4.1:+38392382 MS.gene08588:CDS
TGCCAGAAATCCTCATAGAT+TGG 0.373531 4.1:-38393871 None:intergenic
TTTGTCATCAAAGGATCATA+TGG 0.395653 4.1:-38393382 None:intergenic
CAGGAGTATACGGGATTTCT+CGG 0.400274 4.1:+38394060 MS.gene08588:CDS
GACGATTCCAGATTTCGTTT+GGG 0.408411 4.1:-38392703 None:intergenic
CTCATACTTTCCTTTCCTCT+CGG 0.410239 4.1:+38392474 MS.gene08588:CDS
GTTTCTTTACTTGCTTTCTC+AGG 0.414312 4.1:+38391259 MS.gene08588:CDS
CAAGTGGAAGCAAGCATGCT+TGG 0.416127 4.1:+38392791 MS.gene08588:CDS
GACGAAGAACCTGGAACAAA+TGG 0.419319 4.1:+38393413 MS.gene08588:CDS
GGGATGTGGAAGAATCAATT+AGG 0.420004 4.1:+38393896 MS.gene08588:CDS
GAATGTGCTTAATTGGCTTA+AGG 0.424123 4.1:+38394020 MS.gene08588:CDS
TGAAGTGGGTCTTTATCTTC+AGG 0.424536 4.1:-38391214 None:intergenic
ATACAAGGAGCAAGGTGTTT+CGG 0.426151 4.1:+38392421 MS.gene08588:CDS
CTCTCTTCGTTTGTCATCAA+AGG 0.426304 4.1:-38393391 None:intergenic
TTAAGAAATTTGGAAAGATT+GGG 0.427485 4.1:+38391128 MS.gene08588:CDS
AAAAGTATATATATGTGAAA+TGG 0.431214 4.1:-38394972 None:intergenic
TGTGTAAGAGAGTTCATGAT+TGG 0.436128 4.1:+38391022 MS.gene08588:CDS
GATTCACTGATGGAAGAGTT+TGG 0.439690 4.1:+38392628 MS.gene08588:CDS
AGGTGGCTGTCTTTATCTCT+TGG 0.445446 4.1:+38393541 MS.gene08588:CDS
ACGAAGAGAGACGAAGAACC+TGG 0.455949 4.1:+38393404 MS.gene08588:CDS
AAGTTCAACGTTGGCTTCTA+GGG 0.458277 4.1:-38395088 None:intergenic
CTCACTTGCCATATGTGTAT+TGG 0.459865 4.1:-38394084 None:intergenic
TCCAGATTTCGTTTGGGATG+AGG 0.462321 4.1:-38392697 None:intergenic
AAGTGGAAGCAAGCATGCTT+GGG 0.466214 4.1:+38392792 MS.gene08588:CDS
TATGTGAAATGGCCTTCATA+TGG 0.467837 4.1:-38394961 None:intergenic
GGATCATATGGGTTCACCAT+GGG 0.473212 4.1:-38393370 None:intergenic
TTCTCGGTCCAATACACATA+TGG 0.474933 4.1:+38394076 MS.gene08588:CDS
GGAAGCATGGTCAGATTGAC+AGG 0.481984 4.1:+38393521 MS.gene08588:CDS
TTGATTACTTATGATCTGCC+TGG 0.485276 4.1:+38392658 MS.gene08588:CDS
GTGTAAGAGAGTTCATGATT+GGG 0.487800 4.1:+38391023 MS.gene08588:CDS
ATAAAGACCCACTTCATGCT+TGG 0.491569 4.1:+38391221 MS.gene08588:CDS
TTTGTGCATCGCGTACTACC+TGG 0.493610 4.1:+38394919 MS.gene08588:CDS
AGTTTGTGTACTGCAGCTCC+AGG 0.498358 4.1:-38394937 None:intergenic
TGCAGAAACGAAAATACAAA+AGG 0.502548 4.1:+38393998 MS.gene08588:CDS
TGGAAGATACATGGCATACA+AGG 0.504189 4.1:+38392406 MS.gene08588:CDS
GCACAAAATCAGTCATTGAC+GGG 0.504891 4.1:-38394903 None:intergenic
CTATGAGGATTTCTGGCAAA+GGG 0.505065 4.1:+38393876 MS.gene08588:CDS
GTCTTTATCTCTTGGAAAGA+GGG 0.506713 4.1:+38393549 MS.gene08588:CDS
GGATTTCTGGCAAAGGGATG+TGG 0.507209 4.1:+38393882 MS.gene08588:CDS
CGAGAGGAAAGGAAAGTATG+AGG 0.512168 4.1:-38392473 None:intergenic
AAAATACTTGCTTCTCAAGT+GGG 0.518790 4.1:-38392346 None:intergenic
TGTCTTTATCTCTTGGAAAG+AGG 0.519291 4.1:+38393548 MS.gene08588:CDS
GCTTTGCAGGTCTCGAATTG+GGG 0.522101 4.1:+38393952 MS.gene08588:CDS
AAAGCAGCTTCCTCCACAAA+GGG 0.525187 4.1:-38393934 None:intergenic
TTGTCATCAAAGGATCATAT+GGG 0.529008 4.1:-38393381 None:intergenic
TAGAAGAAACCAAGAAGTCT+AGG 0.529335 4.1:-38393478 None:intergenic
TGTAAGAGAGTTCATGATTG+GGG 0.530248 4.1:+38391024 MS.gene08588:CDS
ATGTGAAATGGCCTTCATAT+GGG 0.532028 4.1:-38394960 None:intergenic
ATCAGCGAAGTTTCTTATCA+GGG 0.532446 4.1:+38393500 MS.gene08588:CDS
TATGCCATGTATCTTCCATC+CGG 0.539640 4.1:-38392401 None:intergenic
ATAATGCGGGTAGCACTAGC+AGG 0.539782 4.1:-38392374 None:intergenic
AAGAAATGCTGAGGCTGAGA+GGG 0.556389 4.1:-38395047 None:intergenic
CTGAGGCTGAGAGGGCCTTG+CGG 0.559279 4.1:-38395039 None:intergenic
TTGCTGTTCAAGTTCAACGT+TGG 0.561905 4.1:-38395097 None:intergenic
TGGATCATTGGTTACTCAAG+TGG 0.565359 4.1:+38392775 MS.gene08588:CDS
TGGTGTTAAAGATTCACTGA+TGG 0.566190 4.1:+38392618 MS.gene08588:CDS
ACTGAAACTCAGGAGTATAC+GGG 0.566332 4.1:+38394051 MS.gene08588:CDS
ATCAGTGAATCTTTAACACC+AGG 0.570063 4.1:-38392616 None:intergenic
CAAAGCAGCTTCCTCCACAA+AGG 0.573514 4.1:-38393935 None:intergenic
GATGGAAGATCCAATCTATG+AGG 0.573832 4.1:+38393861 MS.gene08588:CDS
TGCACAAAATCAGTCATTGA+CGG 0.575384 4.1:-38394904 None:intergenic
ATGACAAACCAAGCATGAAG+TGG 0.579236 4.1:-38391229 None:intergenic
TCCATCCGGAAGCATAATGC+GGG 0.582006 4.1:-38392387 None:intergenic
GTACACAAACTCCCATATGA+AGG 0.587384 4.1:+38394949 MS.gene08588:CDS
GGATCGCTCTCACCAAAACC+AGG 0.589789 4.1:-38392676 None:intergenic
AGGAAATGCGAAACCCTTTG+TGG 0.591906 4.1:+38393921 MS.gene08588:CDS
TTGTTCAACAATTTCTCACA+AGG 0.592322 4.1:-38391166 None:intergenic
GAGGCTGAGAGGGCCTTGCG+GGG 0.592778 4.1:-38395037 None:intergenic
ACCCGCATTATGCTTCCGGA+TGG 0.593805 4.1:+38392386 MS.gene08588:CDS
TTCCATCCGGAAGCATAATG+CGG 0.604964 4.1:-38392388 None:intergenic
CACAAAATCAGTCATTGACG+GGG 0.606548 4.1:-38394902 None:intergenic
AACCTGCAAGCCGAGAGGAA+AGG 0.606711 4.1:-38392484 None:intergenic
GATCATATGGGTTCACCATG+GGG 0.606822 4.1:-38393369 None:intergenic
GTGGAAGAATCAATTAGGCA+AGG 0.615184 4.1:+38393901 MS.gene08588:CDS
AGTTTCTTATCAGGGAAGCA+TGG 0.625370 4.1:+38393508 MS.gene08588:CDS
ACAGGGAATGGATGACAAAG+TGG 0.625940 4.1:+38394876 MS.gene08588:intron
TCTATGAGGATTTCTGGCAA+AGG 0.628041 4.1:+38393875 MS.gene08588:CDS
GCTTCCGGATGGAAGATACA+TGG 0.631513 4.1:+38392397 MS.gene08588:CDS
TGACAAACCAAGCATGAAGT+GGG 0.631660 4.1:-38391228 None:intergenic
AGGATCATATGGGTTCACCA+TGG 0.635002 4.1:-38393371 None:intergenic
CAAGAAGTAGTAGCAAGTAG+TGG 0.638951 4.1:+38395117 MS.gene08588:CDS
TACATGGCATACAAGGAGCA+AGG 0.639291 4.1:+38392413 MS.gene08588:CDS
GTGTAGTAAATATCTGTCTG+TGG 0.641522 4.1:-38395005 None:intergenic
AAAGAAATGCTGAGGCTGAG+AGG 0.645314 4.1:-38395048 None:intergenic
CTACTTCTAAAGAAATGCTG+AGG 0.649194 4.1:-38395056 None:intergenic
AAATACTTGCTTCTCAAGTG+GGG 0.651959 4.1:-38392345 None:intergenic
ATCATATGGGTTCACCATGG+GGG 0.655135 4.1:-38393368 None:intergenic
AAATGCGAAACCCTTTGTGG+AGG 0.661010 4.1:+38393924 MS.gene08588:CDS
TTGTGTGTACTTCTAATCAG+TGG 0.680829 4.1:-38395148 None:intergenic
AGCATGGTCAGATTGACAGG+TGG 0.689331 4.1:+38393524 MS.gene08588:CDS
CAAACAACCTGCAAGCCGAG+AGG 0.700337 4.1:-38392489 None:intergenic
ACAAAATCAGTCATTGACGG+GGG 0.748115 4.1:-38394901 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATATTTTTTTTTTAAGTTA+TGG + chr4.1:38391634-38391653 MS.gene08588:intron 10.0%
!!! ATATTTTCATATTTGCAATT+TGG - chr4.1:38394187-38394206 None:intergenic 15.0%
!!! ATGAAAATATTAGCTTTTAT+AGG + chr4.1:38394197-38394216 MS.gene08588:intron 15.0%
!!! ATTTATTGTATTGTGTTTTT+AGG + chr4.1:38392207-38392226 MS.gene08588:intron 15.0%
!!! GTAAAATATTTAAAACTCTT+GGG - chr4.1:38393809-38393828 None:intergenic 15.0%
!!! TACTTCATTAAATTTAGTTT+AGG + chr4.1:38392999-38393018 MS.gene08588:intron 15.0%
!!! TCTAAAATGAGTTTAAAAAT+TGG - chr4.1:38394324-38394343 None:intergenic 15.0%
!!! TGAAAATATTAGCTTTTATA+GGG + chr4.1:38394198-38394217 MS.gene08588:intron 15.0%
!!! TGTAAAATATTTAAAACTCT+TGG - chr4.1:38393810-38393829 None:intergenic 15.0%
!! AGTTAAATCAATAAACAAGA+CGG + chr4.1:38394711-38394730 MS.gene08588:intron 20.0%
!! TCTTTCATTGTTAAGAAATT+TGG + chr4.1:38391118-38391137 MS.gene08588:CDS 20.0%
!! TTAAGAAATTTGGAAAGATT+GGG + chr4.1:38391128-38391147 MS.gene08588:CDS 20.0%
!!! AAATTCTTTTAAGTTCTCAT+AGG + chr4.1:38394417-38394436 MS.gene08588:intron 20.0%
!!! ACTTTTAACTTGACAAAATT+TGG + chr4.1:38392907-38392926 MS.gene08588:intron 20.0%
!!! TAATTTAAAACTATGAATGC+AGG + chr4.1:38392016-38392035 MS.gene08588:intron 20.0%
!!! TACTTTTTTTTTTGAAGTTG+TGG + chr4.1:38391351-38391370 MS.gene08588:intron 20.0%
!!! TATGTATGGTTTTAAATTGT+GGG + chr4.1:38391449-38391468 MS.gene08588:intron 20.0%
!!! TCTATTTCTCAATTTATTAC+CGG + chr4.1:38393212-38393231 MS.gene08588:intron 20.0%
! AAATCTGTGTTTACAAAAGT+TGG + chr4.1:38393764-38393783 MS.gene08588:intron 25.0%
! AACAACCAAAAAAAGAAACA+TGG - chr4.1:38391299-38391318 None:intergenic 25.0%
! ACAACCAAAAAAAGAAACAT+GGG - chr4.1:38391298-38391317 None:intergenic 25.0%
! ACATACAAACAAAAACATAG+AGG - chr4.1:38394794-38394813 None:intergenic 25.0%
! AGCATAAAACATTGAGAATT+AGG - chr4.1:38392173-38392192 None:intergenic 25.0%
! ATCTTGATATTGTCACAAAA+TGG + chr4.1:38391488-38391507 MS.gene08588:intron 25.0%
! CATACAAACAAAAACATAGA+GGG - chr4.1:38394793-38394812 None:intergenic 25.0%
! CTAACTGTAGAATTCTTAAA+AGG + chr4.1:38391055-38391074 MS.gene08588:CDS 25.0%
! GCATAAAACATTGAGAATTA+GGG - chr4.1:38392172-38392191 None:intergenic 25.0%
! GTTAAGAAATTTGGAAAGAT+TGG + chr4.1:38391127-38391146 MS.gene08588:CDS 25.0%
! TCTTGATATTGTCACAAAAT+GGG + chr4.1:38391489-38391508 MS.gene08588:intron 25.0%
! TTGTAAAAAAGTAACTCTCA+AGG - chr4.1:38394299-38394318 None:intergenic 25.0%
! TTTCTTGACTACAAATAATC+TGG + chr4.1:38394639-38394658 MS.gene08588:intron 25.0%
!! AATTTGCATTTCTTGATGAT+GGG + chr4.1:38391402-38391421 MS.gene08588:intron 25.0%
!! CAGATATTTACTACACTTTT+TGG + chr4.1:38395012-38395031 MS.gene08588:CDS 25.0%
!! CATGATAGTTGTTATTCAAA+AGG - chr4.1:38392963-38392982 None:intergenic 25.0%
!! TAATTCTCAATGTTTTATGC+TGG + chr4.1:38392172-38392191 MS.gene08588:intron 25.0%
!! TAGTTTAGAACTAAGAATGT+AGG + chr4.1:38391527-38391546 MS.gene08588:intron 25.0%
!! TCTAATTCAATTTGCTTTCT+GGG + chr4.1:38394818-38394837 MS.gene08588:intron 25.0%
!! TTGAATTTGCGTTTGAAATT+AGG + chr4.1:38392589-38392608 MS.gene08588:intron 25.0%
!!! CTGCAATATAAATTTTTTGG+AGG - chr4.1:38391974-38391993 None:intergenic 25.0%
!!! GTATGTATGGTTTTAAATTG+TGG + chr4.1:38391448-38391467 MS.gene08588:intron 25.0%
!!! TATTGTATTGTGTTTTTAGG+TGG + chr4.1:38392210-38392229 MS.gene08588:intron 25.0%
!!! TGGCTGCAATATAAATTTTT+TGG - chr4.1:38391977-38391996 None:intergenic 25.0%
AAAAATACTTGCTTCTCAAG+TGG - chr4.1:38392350-38392369 None:intergenic 30.0%
AAAATACTTGCTTCTCAAGT+GGG - chr4.1:38392349-38392368 None:intergenic 30.0%
ACAAAAGGAATGTGCTTAAT+TGG + chr4.1:38394013-38394032 MS.gene08588:CDS 30.0%
AGAATTAGGGTTTCAGAAAA+TGG - chr4.1:38392159-38392178 None:intergenic 30.0%
ATATTATAGTTGAACCCACT+TGG + chr4.1:38391668-38391687 MS.gene08588:intron 30.0%
ATGTACATAGATAGAAATGC+AGG - chr4.1:38393641-38393660 None:intergenic 30.0%
CAATTTGCATTTCTTGATGA+TGG + chr4.1:38391401-38391420 MS.gene08588:intron 30.0%
CTTGATATTGTCACAAAATG+GGG + chr4.1:38391490-38391509 MS.gene08588:intron 30.0%
GACAAAAAAAGAGATAAGCA+AGG - chr4.1:38393583-38393602 None:intergenic 30.0%
GATGTTGTGTATTAACTTTC+AGG + chr4.1:38393331-38393350 MS.gene08588:intron 30.0%
GATTTATGGAATAAGAAGAG+AGG - chr4.1:38394358-38394377 None:intergenic 30.0%
GGAATAGGTTAATGTATGTA+TGG + chr4.1:38391435-38391454 MS.gene08588:intron 30.0%
TATTAGGAATAGGTCAATGT+AGG + chr4.1:38391848-38391867 MS.gene08588:intron 30.0%
TGCAGAAACGAAAATACAAA+AGG + chr4.1:38393998-38394017 MS.gene08588:CDS 30.0%
TGGATGCTGATAAGAATTTA+TGG + chr4.1:38393690-38393709 MS.gene08588:intron 30.0%
TTAGTCAACATGTCCATATA+TGG + chr4.1:38393605-38393624 MS.gene08588:intron 30.0%
TTGTCATCAAAGGATCATAT+GGG - chr4.1:38393384-38393403 None:intergenic 30.0%
TTGTTCAACAATTTCTCACA+AGG - chr4.1:38391169-38391188 None:intergenic 30.0%
TTGTTGAGACATTATGAGTA+GGG + chr4.1:38392113-38392132 MS.gene08588:intron 30.0%
TTTAACCGTCCAATCTTAAT+AGG - chr4.1:38394526-38394545 None:intergenic 30.0%
TTTACCAAGCTTAAATCAGA+CGG + chr4.1:38394585-38394604 MS.gene08588:intron 30.0%
TTTGTCATCAAAGGATCATA+TGG - chr4.1:38393385-38393404 None:intergenic 30.0%
! ACTTGTTTAGAGTGAGTTAA+CGG + chr4.1:38393059-38393078 MS.gene08588:intron 30.0%
! CTCTAATTCAATTTGCTTTC+TGG + chr4.1:38394817-38394836 MS.gene08588:intron 30.0%
!! ATGGGTTTTTGTTTAGGAAT+AGG + chr4.1:38391420-38391439 MS.gene08588:intron 30.0%
!!! ATCACCCATGTTTCTTTTTT+TGG + chr4.1:38391291-38391310 MS.gene08588:intron 30.0%
!!! TGAATGCAGGTTTTAAATTG+AGG + chr4.1:38392029-38392048 MS.gene08588:intron 30.0%
!!! TTGATGATGGGTTTTTGTTT+AGG + chr4.1:38391414-38391433 MS.gene08588:intron 30.0%
AAATACTTGCTTCTCAAGTG+GGG - chr4.1:38392348-38392367 None:intergenic 35.0%
AATACAATCCCTCAAAACCA+GGG - chr4.1:38391832-38391851 None:intergenic 35.0%
AATACCTGGTTGACATGATT+TGG + chr4.1:38392274-38392293 MS.gene08588:intron 35.0%
AATTACAGAACCCAACTCAA+TGG + chr4.1:38393718-38393737 MS.gene08588:intron 35.0%
AATTAGCTGAACCATTGAGT+TGG - chr4.1:38393732-38393751 None:intergenic 35.0%
ACAGTCCTATTAAGATTGGA+CGG + chr4.1:38394518-38394537 MS.gene08588:intron 35.0%
ACATAGATAGAAATGCAGGA+TGG - chr4.1:38393637-38393656 None:intergenic 35.0%
AGGATGGTATAAGCCATATA+TGG - chr4.1:38393621-38393640 None:intergenic 35.0%
ATCAGCGAAGTTTCTTATCA+GGG + chr4.1:38393500-38393519 MS.gene08588:CDS 35.0%
ATCAGTGAATCTTTAACACC+AGG - chr4.1:38392619-38392638 None:intergenic 35.0%
ATCCAATCTATGAGGATTTC+TGG + chr4.1:38393869-38393888 MS.gene08588:CDS 35.0%
ATGTGAAATGGCCTTCATAT+GGG - chr4.1:38394963-38394982 None:intergenic 35.0%
ATTAGCTGAACCATTGAGTT+GGG - chr4.1:38393731-38393750 None:intergenic 35.0%
ATTCATAAACCCCCCAAAAA+AGG - chr4.1:38391608-38391627 None:intergenic 35.0%
ATTGCAGTACAATTGTTGAC+AGG + chr4.1:38394858-38394877 MS.gene08588:intron 35.0%
CAGATCACTTATATGCTGTT+TGG - chr4.1:38393308-38393327 None:intergenic 35.0%
CTGCAAATTAGAGCAAAATG+TGG + chr4.1:38391906-38391925 MS.gene08588:intron 35.0%
GAGCAAAATGTGGATAAATG+AGG + chr4.1:38391916-38391935 MS.gene08588:intron 35.0%
GTCTTTATCTCTTGGAAAGA+GGG + chr4.1:38393549-38393568 MS.gene08588:CDS 35.0%
GTGTAAGAGAGTTCATGATT+GGG + chr4.1:38391023-38391042 MS.gene08588:CDS 35.0%
GTGTAGTAAATATCTGTCTG+TGG - chr4.1:38395008-38395027 None:intergenic 35.0%
GTTATGAAAATGCATGCAGA+AGG - chr4.1:38394127-38394146 None:intergenic 35.0%
GTTGTTGAGACATTATGAGT+AGG + chr4.1:38392112-38392131 MS.gene08588:intron 35.0%
GTTTCTTTACTTGCTTTCTC+AGG + chr4.1:38391259-38391278 MS.gene08588:CDS 35.0%
TAAGAAGAGAGGAATATGAC+AGG - chr4.1:38394347-38394366 None:intergenic 35.0%
TAATACAATCCCTCAAAACC+AGG - chr4.1:38391833-38391852 None:intergenic 35.0%
TAGAAGAAACCAAGAAGTCT+AGG - chr4.1:38393481-38393500 None:intergenic 35.0%
TATCAGCATCCATCTAACTA+GGG - chr4.1:38393682-38393701 None:intergenic 35.0%
TATCAGCGAAGTTTCTTATC+AGG + chr4.1:38393499-38393518 MS.gene08588:CDS 35.0%
TATGTGAAATGGCCTTCATA+TGG - chr4.1:38394964-38394983 None:intergenic 35.0%
TCAACAATGCCTCAAACTAA+GGG - chr4.1:38392558-38392577 None:intergenic 35.0%
TGAGGGATTGTATTAGGAAT+AGG + chr4.1:38391838-38391857 MS.gene08588:intron 35.0%
TGCACAAAATCAGTCATTGA+CGG - chr4.1:38394907-38394926 None:intergenic 35.0%
TGTAAGAGAGTTCATGATTG+GGG + chr4.1:38391024-38391043 MS.gene08588:CDS 35.0%
TGTCTTTATCTCTTGGAAAG+AGG + chr4.1:38393548-38393567 MS.gene08588:CDS 35.0%
TGTGTAAGAGAGTTCATGAT+TGG + chr4.1:38391022-38391041 MS.gene08588:CDS 35.0%
TTAATACCTGCAAGTCTATC+AGG - chr4.1:38392835-38392854 None:intergenic 35.0%
TTATCAGCATCCATCTAACT+AGG - chr4.1:38393683-38393702 None:intergenic 35.0%
TTCAACAATGCCTCAAACTA+AGG - chr4.1:38392559-38392578 None:intergenic 35.0%
TTGATTACTTATGATCTGCC+TGG + chr4.1:38392658-38392677 MS.gene08588:CDS 35.0%
TTGCAGTACAATTGTTGACA+GGG + chr4.1:38394859-38394878 MS.gene08588:intron 35.0%
TTGTGTCACATCAATAGAAC+AGG + chr4.1:38393113-38393132 MS.gene08588:intron 35.0%
! AAAAGAATTTTACACCGCTG+AGG - chr4.1:38394407-38394426 None:intergenic 35.0%
! AAAGAATTTTACACCGCTGA+GGG - chr4.1:38394406-38394425 None:intergenic 35.0%
! ATTTTCGTTTCTGCAACTTG+AGG - chr4.1:38393993-38394012 None:intergenic 35.0%
! CGTTTGAAATTAGGAATTCC+TGG + chr4.1:38392598-38392617 MS.gene08588:intron 35.0%
! CTACTTCTAAAGAAATGCTG+AGG - chr4.1:38395059-38395078 None:intergenic 35.0%
! GAATGTGCTTAATTGGCTTA+AGG + chr4.1:38394020-38394039 MS.gene08588:CDS 35.0%
! GTGGCATTGAAGTTAAACAT+GGG - chr4.1:38391579-38391598 None:intergenic 35.0%
! TGGTGTTAAAGATTCACTGA+TGG + chr4.1:38392618-38392637 MS.gene08588:CDS 35.0%
! TGTGGCATTGAAGTTAAACA+TGG - chr4.1:38391580-38391599 None:intergenic 35.0%
! TTTACAAAAGTTGGTTCCGA+GGG + chr4.1:38393773-38393792 MS.gene08588:intron 35.0%
!!! ATGCCACATGTTTCCTTTTT+TGG + chr4.1:38391592-38391611 MS.gene08588:intron 35.0%
!!! GTTGACAAGTTTTGGATCAT+TGG + chr4.1:38392763-38392782 MS.gene08588:CDS 35.0%
!!! TGCCACATGTTTCCTTTTTT+GGG + chr4.1:38391593-38391612 MS.gene08588:intron 35.0%
!!! TGGTTTTGAGGGATTGTATT+AGG + chr4.1:38391832-38391851 MS.gene08588:intron 35.0%
AAATTGTAGTTGTGATGCCG+AGG + chr4.1:38391942-38391961 MS.gene08588:intron 40.0%
ACAAAATCAGTCATTGACGG+GGG - chr4.1:38394904-38394923 None:intergenic 40.0%
ACAGTCTACAACTGCAATTG+TGG - chr4.1:38391997-38392016 None:intergenic 40.0%
AGTTTCTTATCAGGGAAGCA+TGG + chr4.1:38393508-38393527 MS.gene08588:CDS 40.0%
ATAAAGACCCACTTCATGCT+TGG + chr4.1:38391221-38391240 MS.gene08588:CDS 40.0%
ATAGTTGAACCCACTTGGAT+TGG + chr4.1:38391673-38391692 MS.gene08588:intron 40.0%
ATCAACCACTAAAGTCAGAC+AGG - chr4.1:38392066-38392085 None:intergenic 40.0%
ATGACAAACCAAGCATGAAG+TGG - chr4.1:38391232-38391251 None:intergenic 40.0%
CAAGAAGTAGTAGCAAGTAG+TGG + chr4.1:38395117-38395136 MS.gene08588:CDS 40.0%
CAATCTTAATAGGACTGTCC+AGG - chr4.1:38394516-38394535 None:intergenic 40.0%
CACAAAATCAGTCATTGACG+GGG - chr4.1:38394905-38394924 None:intergenic 40.0%
CGGCATCACAACTACAATTT+GGG - chr4.1:38391942-38391961 None:intergenic 40.0%
CTCACTTGCCATATGTGTAT+TGG - chr4.1:38394087-38394106 None:intergenic 40.0%
CTCATACTTTCCTTTCCTCT+CGG + chr4.1:38392474-38392493 MS.gene08588:CDS 40.0%
CTCTCTTCGTTTGTCATCAA+AGG - chr4.1:38393394-38393413 None:intergenic 40.0%
CTGGACAGTCCTATTAAGAT+TGG + chr4.1:38394514-38394533 MS.gene08588:intron 40.0%
GACGATTCCAGATTTCGTTT+GGG - chr4.1:38392706-38392725 None:intergenic 40.0%
GATGGAAGATCCAATCTATG+AGG + chr4.1:38393861-38393880 MS.gene08588:CDS 40.0%
GATTATCCCCATGCCAAATT+CGG + chr4.1:38391751-38391770 MS.gene08588:intron 40.0%
GATTCACTGATGGAAGAGTT+TGG + chr4.1:38392628-38392647 MS.gene08588:CDS 40.0%
GCACAAAATCAGTCATTGAC+GGG - chr4.1:38394906-38394925 None:intergenic 40.0%
GGGATGTGGAAGAATCAATT+AGG + chr4.1:38393896-38393915 MS.gene08588:CDS 40.0%
GTACAATTGTTGACAGGGAA+TGG + chr4.1:38394864-38394883 MS.gene08588:intron 40.0%
GTACACAAACTCCCATATGA+AGG + chr4.1:38394949-38394968 MS.gene08588:CDS 40.0%
GTGGAAGAATCAATTAGGCA+AGG + chr4.1:38393901-38393920 MS.gene08588:CDS 40.0%
TAAATCAGACGGTCTGCATT+TGG + chr4.1:38394596-38394615 MS.gene08588:intron 40.0%
TACATACCTGATAGACTTGC+AGG + chr4.1:38392826-38392845 MS.gene08588:CDS 40.0%
TATCTCTTGGAAAGAGGGTA+AGG + chr4.1:38393554-38393573 MS.gene08588:intron 40.0%
TATGCCATGTATCTTCCATC+CGG - chr4.1:38392404-38392423 None:intergenic 40.0%
TCAACCAAATCATGTCAACC+AGG - chr4.1:38392281-38392300 None:intergenic 40.0%
TCAACCACTAAAGTCAGACA+GGG - chr4.1:38392065-38392084 None:intergenic 40.0%
TCACGTTAACCCTAGTTAGA+TGG + chr4.1:38393670-38393689 MS.gene08588:intron 40.0%
TCAGTGAGAATAAGTGTGTC+TGG + chr4.1:38393141-38393160 MS.gene08588:intron 40.0%
TCAGTGCTTTGTCCTGAAAA+AGG - chr4.1:38393843-38393862 None:intergenic 40.0%
TCGGCATCACAACTACAATT+TGG - chr4.1:38391943-38391962 None:intergenic 40.0%
TCTGCAACTTGAGGTCTAAA+AGG - chr4.1:38393984-38394003 None:intergenic 40.0%
TGAAGTGGGTCTTTATCTTC+AGG - chr4.1:38391217-38391236 None:intergenic 40.0%
TGAATTCAATTGACCTTCCC+TGG + chr4.1:38391812-38391831 MS.gene08588:intron 40.0%
TGACAAACCAAGCATGAAGT+GGG - chr4.1:38391231-38391250 None:intergenic 40.0%
TGACGATTCCAGATTTCGTT+TGG - chr4.1:38392707-38392726 None:intergenic 40.0%
TGAGACATTATGAGTAGGGT+CGG + chr4.1:38392117-38392136 MS.gene08588:intron 40.0%
TGCCAGAAATCCTCATAGAT+TGG - chr4.1:38393874-38393893 None:intergenic 40.0%
TGGAAGATACATGGCATACA+AGG + chr4.1:38392406-38392425 MS.gene08588:CDS 40.0%
TTCTCGGTCCAATACACATA+TGG + chr4.1:38394076-38394095 MS.gene08588:CDS 40.0%
! ACTGAAACTCAGGAGTATAC+GGG + chr4.1:38394051-38394070 MS.gene08588:CDS 40.0%
! ACTTATGATCTGCCTGGTTT+TGG + chr4.1:38392664-38392683 MS.gene08588:CDS 40.0%
! AGAAGCATACAGCTCAATTG+AGG + chr4.1:38394442-38394461 MS.gene08588:intron 40.0%
! ATACAAGGAGCAAGGTGTTT+CGG + chr4.1:38392421-38392440 MS.gene08588:CDS 40.0%
! CACTGAAACTCAGGAGTATA+CGG + chr4.1:38394050-38394069 MS.gene08588:CDS 40.0%
! CAGATCTCATTGCCTTTTTC+AGG + chr4.1:38393828-38393847 MS.gene08588:intron 40.0%
! GATGGTAATGAGCGGATTTA+TGG - chr4.1:38394372-38394391 None:intergenic 40.0%
! GGCAATTTTCACTGAAACTC+AGG + chr4.1:38394041-38394060 MS.gene08588:CDS 40.0%
! GTTTACAAAAGTTGGTTCCG+AGG + chr4.1:38393772-38393791 MS.gene08588:intron 40.0%
! TGGATCATTGGTTACTCAAG+TGG + chr4.1:38392775-38392794 MS.gene08588:CDS 40.0%
! TTGCTGTTCAAGTTCAACGT+TGG - chr4.1:38395100-38395119 None:intergenic 40.0%
! TTGTTTCCACCCTTAGTTTG+AGG + chr4.1:38392546-38392565 MS.gene08588:intron 40.0%
! TTTTCGTGTCCATTTGTTCC+AGG - chr4.1:38393425-38393444 None:intergenic 40.0%
!! AAGTTCAACGTTGGCTTCTA+GGG - chr4.1:38395091-38395110 None:intergenic 40.0%
!! CTATGAGGATTTCTGGCAAA+GGG + chr4.1:38393876-38393895 MS.gene08588:CDS 40.0%
!! GTAGGCATGGTTCTAAATTG+CGG + chr4.1:38391866-38391885 MS.gene08588:intron 40.0%
!! TCTATGAGGATTTCTGGCAA+AGG + chr4.1:38393875-38393894 MS.gene08588:CDS 40.0%
!!! CACATGTTTCCTTTTTTGGG+GGG + chr4.1:38391596-38391615 MS.gene08588:intron 40.0%
!!! CCACATGTTTCCTTTTTTGG+GGG + chr4.1:38391595-38391614 MS.gene08588:intron 40.0%
!!! CTCTTGGTGTTGACAAGTTT+TGG + chr4.1:38392755-38392774 MS.gene08588:CDS 40.0%
!!! GCCACATGTTTCCTTTTTTG+GGG + chr4.1:38391594-38391613 MS.gene08588:intron 40.0%
!!! TCGTTTTTAGCTGATGCTCT+TGG + chr4.1:38392739-38392758 MS.gene08588:CDS 40.0%
!!! TTTTCAGGACAAAGCACTGA+TGG + chr4.1:38393843-38393862 MS.gene08588:intron 40.0%
!!! TTTTTTGGAGGTCTTCACCT+CGG - chr4.1:38391962-38391981 None:intergenic 40.0%
AAAGAAATGCTGAGGCTGAG+AGG - chr4.1:38395051-38395070 None:intergenic 45.0%
AAAGCAGCTTCCTCCACAAA+GGG - chr4.1:38393937-38393956 None:intergenic 45.0%
AAATGCGAAACCCTTTGTGG+AGG + chr4.1:38393924-38393943 MS.gene08588:CDS 45.0%
AAGAAATGCTGAGGCTGAGA+GGG - chr4.1:38395050-38395069 None:intergenic 45.0%
AAGTGGAAGCAAGCATGCTT+GGG + chr4.1:38392792-38392811 MS.gene08588:CDS 45.0%
ACAATGCCTCAAACTAAGGG+TGG - chr4.1:38392555-38392574 None:intergenic 45.0%
ACAGGGAATGGATGACAAAG+TGG + chr4.1:38394876-38394895 MS.gene08588:intron 45.0%
AGGAAATGCGAAACCCTTTG+TGG + chr4.1:38393921-38393940 MS.gene08588:CDS 45.0%
AGGATCATATGGGTTCACCA+TGG - chr4.1:38393374-38393393 None:intergenic 45.0%
AGGTGGCTGTCTTTATCTCT+TGG + chr4.1:38393541-38393560 MS.gene08588:CDS 45.0%
ATCATATGGGTTCACCATGG+GGG - chr4.1:38393371-38393390 None:intergenic 45.0%
ATCTCGATTCTCTGCTGTCA+GGG + chr4.1:38394465-38394484 MS.gene08588:intron 45.0%
ATTATGAGTAGGGTCGGTCT+AGG + chr4.1:38392123-38392142 MS.gene08588:intron 45.0%
CAACCACTAAAGTCAGACAG+GGG - chr4.1:38392064-38392083 None:intergenic 45.0%
CAGACCGTCTGATTTAAGCT+TGG - chr4.1:38394592-38394611 None:intergenic 45.0%
CCACAACGTGAATGCAATTG+AGG - chr4.1:38392093-38392112 None:intergenic 45.0%
CCCCCAAAAAAGGAAACATG+TGG - chr4.1:38391598-38391617 None:intergenic 45.0%
CCTCAATTGCATTCACGTTG+TGG + chr4.1:38392090-38392109 MS.gene08588:intron 45.0%
CGAAGCTTTCCTAGACTTCT+TGG + chr4.1:38393469-38393488 MS.gene08588:CDS 45.0%
GACGAAGAACCTGGAACAAA+TGG + chr4.1:38393413-38393432 MS.gene08588:CDS 45.0%
GATCATATGGGTTCACCATG+GGG - chr4.1:38393372-38393391 None:intergenic 45.0%
GGAATAGGTCAATGTAGGCA+TGG + chr4.1:38391853-38391872 MS.gene08588:intron 45.0%
GGATCATATGGGTTCACCAT+GGG - chr4.1:38393373-38393392 None:intergenic 45.0%
TACATGGCATACAAGGAGCA+AGG + chr4.1:38392413-38392432 MS.gene08588:CDS 45.0%
TCCTCATCCCAAACGAAATC+TGG + chr4.1:38392696-38392715 MS.gene08588:CDS 45.0%
TGCTTTGCAGGTCTCGAATT+GGG + chr4.1:38393951-38393970 MS.gene08588:CDS 45.0%
! AATTTTACACCGCTGAGGGA+AGG - chr4.1:38394402-38394421 None:intergenic 45.0%
! ATTTTACACCGCTGAGGGAA+GGG - chr4.1:38394401-38394420 None:intergenic 45.0%
! CAGGAGTATACGGGATTTCT+CGG + chr4.1:38394060-38394079 MS.gene08588:CDS 45.0%
! CGAGAGGAAAGGAAAGTATG+AGG - chr4.1:38392476-38392495 None:intergenic 45.0%
! TAGCTAGTCTGCTCAATACC+TGG + chr4.1:38392260-38392279 MS.gene08588:intron 45.0%
! TCCAGATTTCGTTTGGGATG+AGG - chr4.1:38392700-38392719 None:intergenic 45.0%
! TTCCATCCGGAAGCATAATG+CGG - chr4.1:38392391-38392410 None:intergenic 45.0%
!! ACGTTGGCTTCTAGGGTAAT+TGG - chr4.1:38395084-38395103 None:intergenic 45.0%
!! ATGGTTCTAAATTGCGGCTG+TGG + chr4.1:38391872-38391891 MS.gene08588:intron 45.0%
!! CAAGTTCAACGTTGGCTTCT+AGG - chr4.1:38395092-38395111 None:intergenic 45.0%
!!! ATTGACCTTCCCTGGTTTTG+AGG + chr4.1:38391820-38391839 MS.gene08588:intron 45.0%
!!! TTGACCTTCCCTGGTTTTGA+GGG + chr4.1:38391821-38391840 MS.gene08588:intron 45.0%
ACGAAGAGAGACGAAGAACC+TGG + chr4.1:38393404-38393423 MS.gene08588:CDS 50.0%
AGCATGGTCAGATTGACAGG+TGG + chr4.1:38393524-38393543 MS.gene08588:CDS 50.0%
AGGTCAAAAGCCAACACCAC+CGG - chr4.1:38391700-38391719 None:intergenic 50.0%
AGTTTGTGTACTGCAGCTCC+AGG - chr4.1:38394940-38394959 None:intergenic 50.0%
ATAATGCGGGTAGCACTAGC+AGG - chr4.1:38392377-38392396 None:intergenic 50.0%
ATCCCCATGCCAAATTCGGT+GGG + chr4.1:38391755-38391774 MS.gene08588:intron 50.0%
CAAAGCAGCTTCCTCCACAA+AGG - chr4.1:38393938-38393957 None:intergenic 50.0%
CAAGTGGAAGCAAGCATGCT+TGG + chr4.1:38392791-38392810 MS.gene08588:CDS 50.0%
CAATCCCTCAAAACCAGGGA+AGG - chr4.1:38391828-38391847 None:intergenic 50.0%
CCAAACTAGCCCACCGAATT+TGG - chr4.1:38391767-38391786 None:intergenic 50.0%
CTGCTTTGCAGGTCTCGAAT+TGG + chr4.1:38393950-38393969 MS.gene08588:CDS 50.0%
CTTGGAGTGTGCTCTTCTCA+AGG + chr4.1:38391718-38391737 MS.gene08588:intron 50.0%
GATCTCGATTCTCTGCTGTC+AGG + chr4.1:38394464-38394483 MS.gene08588:intron 50.0%
GCTTCCGGATGGAAGATACA+TGG + chr4.1:38392397-38392416 MS.gene08588:CDS 50.0%
GCTTTGCAGGTCTCGAATTG+GGG + chr4.1:38393952-38393971 MS.gene08588:CDS 50.0%
GTGTGCTCTTCTCAAGGTCT+CGG + chr4.1:38391724-38391743 MS.gene08588:intron 50.0%
TAGCCCACCGAATTTGGCAT+GGG - chr4.1:38391761-38391780 None:intergenic 50.0%
TATCCCCATGCCAAATTCGG+TGG + chr4.1:38391754-38391773 MS.gene08588:intron 50.0%
TCATGTGCGTGAGCGATAGA+GGG - chr4.1:38394667-38394686 None:intergenic 50.0%
TGACACTGACACGTAGAGAC+CGG - chr4.1:38393234-38393253 None:intergenic 50.0%
TGCTACCCGCATTATGCTTC+CGG + chr4.1:38392382-38392401 MS.gene08588:CDS 50.0%
TGTGCTCTTCTCAAGGTCTC+GGG + chr4.1:38391725-38391744 MS.gene08588:intron 50.0%
TTCATGTGCGTGAGCGATAG+AGG - chr4.1:38394668-38394687 None:intergenic 50.0%
TTTGTGCATCGCGTACTACC+TGG + chr4.1:38394919-38394938 MS.gene08588:CDS 50.0%
! AAAGTTGGTTCCGAGGGCAT+AGG + chr4.1:38393779-38393798 MS.gene08588:intron 50.0%
! CTTGAGAAGAGCACACTCCA+AGG - chr4.1:38391720-38391739 None:intergenic 50.0%
! GCTTGTTAACGGCATGACCA+GGG - chr4.1:38394494-38394513 None:intergenic 50.0%
! GGAAGCATGGTCAGATTGAC+AGG + chr4.1:38393521-38393540 MS.gene08588:CDS 50.0%
! GGGAAGGAGATGGTAATGAG+CGG - chr4.1:38394380-38394399 None:intergenic 50.0%
! TCCATCCGGAAGCATAATGC+GGG - chr4.1:38392390-38392409 None:intergenic 50.0%
! TTTTACACCGCTGAGGGAAG+GGG - chr4.1:38394400-38394419 None:intergenic 50.0%
!! CCAAATTCGGTGGGCTAGTT+TGG + chr4.1:38391764-38391783 MS.gene08588:intron 50.0%
!! GGACTGTCCAGGCTTGTTAA+CGG - chr4.1:38394505-38394524 None:intergenic 50.0%
!! GGATTTCTGGCAAAGGGATG+TGG + chr4.1:38393882-38393901 MS.gene08588:CDS 50.0%
!! TGAACCCACTTGGATTGGTC+CGG + chr4.1:38391678-38391697 MS.gene08588:intron 50.0%
!!! ACACTTTTTGGAACCCCGCA+AGG + chr4.1:38395024-38395043 MS.gene08588:CDS 50.0%
!!! GTGGTGTTGGCTTTTGACCT+TGG + chr4.1:38391700-38391719 MS.gene08588:intron 50.0%
AACCTGCAAGCCGAGAGGAA+AGG - chr4.1:38392487-38392506 None:intergenic 55.0%
ACCACCGGACCAATCCAAGT+GGG - chr4.1:38391685-38391704 None:intergenic 55.0%
ACCCGCATTATGCTTCCGGA+TGG + chr4.1:38392386-38392405 MS.gene08588:CDS 55.0%
AGCCCACCGAATTTGGCATG+GGG - chr4.1:38391760-38391779 None:intergenic 55.0%
CAAACAACCTGCAAGCCGAG+AGG - chr4.1:38392492-38392511 None:intergenic 55.0%
CACTAAAGTCAGACAGGGGC+AGG - chr4.1:38392060-38392079 None:intergenic 55.0%
CTAGCCCACCGAATTTGGCA+TGG - chr4.1:38391762-38391781 None:intergenic 55.0%
CTGCCCCTGTCTGACTTTAG+TGG + chr4.1:38392058-38392077 MS.gene08588:intron 55.0%
CTTGGGATAGCCTATGCCCT+CGG - chr4.1:38393792-38393811 None:intergenic 55.0%
GGATCGCTCTCACCAAAACC+AGG - chr4.1:38392679-38392698 None:intergenic 55.0%
GGTCATGCCGTTAACAAGCC+TGG + chr4.1:38394495-38394514 MS.gene08588:intron 55.0%
GTTCACCATGGGGGCAAACA+TGG - chr4.1:38393362-38393381 None:intergenic 55.0%
TGTCAGTGTCATGTCGCGTC+TGG + chr4.1:38393243-38393262 MS.gene08588:intron 55.0%
! TGTGGAGGAAGCTGCTTTGC+AGG + chr4.1:38393939-38393958 MS.gene08588:CDS 55.0%
! TTCCTTTCCTCTCGGCTTGC+AGG + chr4.1:38392482-38392501 MS.gene08588:CDS 55.0%
!! GGCTTGTTAACGGCATGACC+AGG - chr4.1:38394495-38394514 None:intergenic 55.0%
!! TTGGATTGGTCCGGTGGTGT+TGG + chr4.1:38391687-38391706 MS.gene08588:intron 55.0%
CACCACCGGACCAATCCAAG+TGG - chr4.1:38391686-38391705 None:intergenic 60.0%
CTCTGCTGTCAGGGAATCCC+TGG + chr4.1:38394474-38394493 MS.gene08588:intron 60.0%
CTGAGGGAAGGGGAAGGAGA+TGG - chr4.1:38394390-38394409 None:intergenic 60.0%
TCTCCTTCCCCTTCCCTCAG+CGG + chr4.1:38394390-38394409 MS.gene08588:intron 60.0%
TGCTGCCATGTTTGCCCCCA+TGG + chr4.1:38393354-38393373 MS.gene08588:CDS 60.0%
!! ACCCACTTGGATTGGTCCGG+TGG + chr4.1:38391681-38391700 MS.gene08588:intron 60.0%
ACACCGCTGAGGGAAGGGGA+AGG - chr4.1:38394396-38394415 None:intergenic 65.0%
CTGAGGCTGAGAGGGCCTTG+CGG - chr4.1:38395042-38395061 None:intergenic 65.0%
TGAGGCTGAGAGGGCCTTGC+GGG - chr4.1:38395041-38395060 None:intergenic 65.0%
GAGGCTGAGAGGGCCTTGCG+GGG - chr4.1:38395040-38395059 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 38390989 38395158 38390989 ID=MS.gene08588
chr4.1 mRNA 38390989 38395158 38390989 ID=MS.gene08588.t1;Parent=MS.gene08588
chr4.1 exon 38390989 38391280 38390989 ID=MS.gene08588.t1.exon1;Parent=MS.gene08588.t1
chr4.1 CDS 38390989 38391280 38390989 ID=cds.MS.gene08588.t1;Parent=MS.gene08588.t1
chr4.1 exon 38392312 38392503 38392312 ID=MS.gene08588.t1.exon2;Parent=MS.gene08588.t1
chr4.1 CDS 38392312 38392503 38392312 ID=cds.MS.gene08588.t1;Parent=MS.gene08588.t1
chr4.1 exon 38392611 38392847 38392611 ID=MS.gene08588.t1.exon3;Parent=MS.gene08588.t1
chr4.1 CDS 38392611 38392847 38392611 ID=cds.MS.gene08588.t1;Parent=MS.gene08588.t1
chr4.1 exon 38393353 38393570 38393353 ID=MS.gene08588.t1.exon4;Parent=MS.gene08588.t1
chr4.1 CDS 38393353 38393570 38393353 ID=cds.MS.gene08588.t1;Parent=MS.gene08588.t1
chr4.1 exon 38393850 38394101 38393850 ID=MS.gene08588.t1.exon5;Parent=MS.gene08588.t1
chr4.1 CDS 38393850 38394101 38393850 ID=cds.MS.gene08588.t1;Parent=MS.gene08588.t1
chr4.1 exon 38394880 38395158 38394880 ID=MS.gene08588.t1.exon6;Parent=MS.gene08588.t1
chr4.1 CDS 38394880 38395158 38394880 ID=cds.MS.gene08588.t1;Parent=MS.gene08588.t1
Gene Sequence

>MS.gene08588

ATGAATCAAAGAGAGTTGATACGTTTCAAGATATGTGTAAGAGAGTTCATGATTGGGGTTTCAGAACTAACTGTAGAATTCTTAAAAGGTTGCAGAGACATAGTGAAACAAAGCATAGTGAATGAAGATTCTTTCATTGTTAAGAAATTTGGAAAGATTGGGAAGAGAGTGAGAAAACCTTGTGAGAAATTGTTGAACAAATTGAGTTACTTTAATAAGTATTTGCCTGAAGATAAAGACCCACTTCATGCTTGGTTTGTCATCTTGTTCGTTTCTTTACTTGCTTTCTCAGGTTAATTTCAATCACCCATGTTTCTTTTTTTGGTTGTTTATTTATAAAAATCATAAAAATTTAATCTTTTTACTTTTTTTTTTGAAGTTGTGGATTCTTAATTTATGTTATAATTGAGTTCAATTTGCATTTCTTGATGATGGGTTTTTGTTTAGGAATAGGTTAATGTATGTATGGTTTTAAATTGTGGGTGTTGTTATGCTGCATATCTTGATATTGTCACAAAATGGGGTTGCAATTGCAGACTAGTTTAGAACTAAGAATGTAGGTTATAAATCGAGATCATAATTGTACTCCCATGTTTAACTTCAATGCCACATGTTTCCTTTTTTGGGGGGTTTATGAATAAATTTCATATTTTTTTTTTAAGTTATGGATTCATAATTGATATTATAGTTGAACCCACTTGGATTGGTCCGGTGGTGTTGGCTTTTGACCTTGGAGTGTGCTCTTCTCAAGGTCTCGGGTTCGATTATCCCCATGCCAAATTCGGTGGGCTAGTTTGGCTTCTTAAACAGAAAATGTTATAGTTGAATTCAATTGACCTTCCCTGGTTTTGAGGGATTGTATTAGGAATAGGTCAATGTAGGCATGGTTCTAAATTGCGGCTGTGGTTGCAATTATGCTGCAAATTAGAGCAAAATGTGGATAAATGAGGCCCAAATTGTAGTTGTGATGCCGAGGTGAAGACCTCCAAAAAATTTATATTGCAGCCACAATTGCAGTTGTAGACTGTAATTTAAAACTATGAATGCAGGTTTTAAATTGAGGCTGCGCCTGCCCCTGTCTGACTTTAGTGGTTGATCTAGCCTCAATTGCATTCACGTTGTGGTTGTTGAGACATTATGAGTAGGGTCGGTCTAGGTTGTCGCTGACCATTTTCTGAAACCCTAATTCTCAATGTTTTATGCTGGAATGCTAGAAAGATTTATTGTATTGTGTTTTTAGGTGGTTTTGTTTGTTTATGTTGTATGTGTTATAGCTAGTCTGCTCAATACCTGGTTGACATGATTTGGTTGATTTATTTGCAGCTTTGTATGTAAATTTTGAGTATGATCAATCTGCCCCACTTGAGAAGCAAGTATTTTTGCATCCTGCTAGTGCTACCCGCATTATGCTTCCGGATGGAAGATACATGGCATACAAGGAGCAAGGTGTTTCGGCTGACAGAGCAAGATTTTCGATTATTGCTCCTCATACTTTCCTTTCCTCTCGGCTTGCAGGTTGTTTGAACTTTAAAGCTTCAATTGTATGTTTTCAAGTTTTTGTTTCCACCCTTAGTTTGAGGCATTGTTGAATATTTTGCTTTTGAATTTGCGTTTGAAATTAGGAATTCCTGGTGTTAAAGATTCACTGATGGAAGAGTTTGGCGTTCACTTGATTACTTATGATCTGCCTGGTTTTGGTGAGAGCGATCCTCATCCCAAACGAAATCTGGAATCGTCAGCAATAGATATGTCGTTTTTAGCTGATGCTCTTGGTGTTGACAAGTTTTGGATCATTGGTTACTCAAGTGGAAGCAAGCATGCTTGGGCTGCGCTTAGATACATACCTGATAGACTTGCAGGTATTAATAGTTCTTTTTTTTGTCTTATAACTGTATTTTTTTTTATTTACTTACATGCAACTTTTAACTTGACAAAATTTGGAACTTTCATAGTCACTCTTCTGTTCACTTACCTTTTGAATAACAACTATCATGCTCATATGTTTTAGTGTACTTCATTAAATTTAGTTTAGGACTTCTGCTCTTTTTTCGTAACTAAAACACATGTATAACTTGTTTAGAGTGAGTTAACGGTAAGTTTGTATATAAATGTTGAATAGTATATTTGTGTCACATCAATAGAACAGGTTTTTTCAGTGAGAATAAGTGTGTCTGGTGTTTGACACATGACAGTGTCTGACACGTGTGATGACATTCAATCACTTCTATTTCTCAATTTATTACCGGTCTCTACGTGTCAGTGTCATGTCGCGTCTGGTGTCAGTGTATATTTCAGTGCTTCATACATACTAGTGTGCCAAACAGCATATAAGTGATCTGTCAGATGTTGTGTATTAACTTTCAGGTGCTGCCATGTTTGCCCCCATGGTGAACCCATATGATCCTTTGATGACAAACGAAGAGAGACGAAGAACCTGGAACAAATGGACACGAAAAAGAAAATTGATGTACTTCTTAGCTCGAAGCTTTCCTAGACTTCTTGGTTTCTTCTATCAGCGAAGTTTCTTATCAGGGAAGCATGGTCAGATTGACAGGTGGCTGTCTTTATCTCTTGGAAAGAGGGTAAGGAAGCCTTGCTTATCTCTTTTTTTGTCTCTTAGTCAACATGTCCATATATGGCTTATACCATCCTGCATTTCTATCTATGTACATTCATGTCTATCACGTTAACCCTAGTTAGATGGATGCTGATAAGAATTTATGGATTGAAATTACAGAACCCAACTCAATGGTTCAGCTAATTACGTGTAATGTAAAATCTGTGTTTACAAAAGTTGGTTCCGAGGGCATAGGCTATCCCAAGAGTTTTAAATATTTTACAGATCTCATTGCCTTTTTCAGGACAAAGCACTGATGGAAGATCCAATCTATGAGGATTTCTGGCAAAGGGATGTGGAAGAATCAATTAGGCAAGGAAATGCGAAACCCTTTGTGGAGGAAGCTGCTTTGCAGGTCTCGAATTGGGGTTTCAGCCTTTTAGACCTCAAGTTGCAGAAACGAAAATACAAAAGGAATGTGCTTAATTGGCTTAAGGCAATTTTCACTGAAACTCAGGAGTATACGGGATTTCTCGGTCCAATACACATATGGCAAGTGAGTGCATCGCTGTTTTGATCCTTCTGCATGCATTTTCATAACATAACAAATTTTAACACAAATCAGCAATGACAATGTGCCAAATTGCAAATATGAAAATATTAGCTTTTATAGGGTATACGACAAGTAATTTGCATAAAATTGTTACTGATATACATATAGAAATTACTAGACAAATACTACACTACATTCCTTGAGAGTTACTTTTTTACAACTCCAATTTTTAAACTCATTTTAGACCTGTCATATTCCTCTCTTCTTATTCCATAAATCCGCTCATTACCATCTCCTTCCCCTTCCCTCAGCGGTGTAAAATTCTTTTAAGTTCTCATAGGTAAGAAGCATACAGCTCAATTGAGGATCTCGATTCTCTGCTGTCAGGGAATCCCTGGTCATGCCGTTAACAAGCCTGGACAGTCCTATTAAGATTGGACGGTTAAATTTTTGACTTAATTCTTTATTAAATCTCTTCAAATCTGATTTACCAAGCTTAAATCAGACGGTCTGCATTTGGTGTCAACATGACTATTAAGATTTCTTGACTACAAATAATCTGGAACCCTCTATCGCTCACGCACATGAAAAGAAAACATTGAATAGTTGACTAGTTAAATCAATAAACAAGACGGTCTAGATTTTCTGTATACGTGACTATACAGATTTCACGATCGTAAAGAATCTAGATCCCTCTATGTTTTTGTTTGTATGTATGCTCTAATTCAATTTGCTTTCTGGGATTGAAAATATAAACTTATTGCAGTACAATTGTTGACAGGGAATGGATGACAAAGTGGTTCCCCCGTCAATGACTGATTTTGTGCATCGCGTACTACCTGGAGCTGCAGTACACAAACTCCCATATGAAGGCCATTTCACATATATATACTTTTGTGATGAATGCCACAGACAGATATTTACTACACTTTTTGGAACCCCGCAAGGCCCTCTCAGCCTCAGCATTTCTTTAGAAGTAGATCCAATTACCCTAGAAGCCAACGTTGAACTTGAACAGCAAGAAGTAGTAGCAAGTAGTGGTGATTATGCCACTGATTAG

Protein sequence

>MS.gene08588.t1

MNQRELIRFKICVREFMIGVSELTVEFLKGCRDIVKQSIVNEDSFIVKKFGKIGKRVRKPCEKLLNKLSYFNKYLPEDKDPLHAWFVILFVSLLAFSALYVNFEYDQSAPLEKQVFLHPASATRIMLPDGRYMAYKEQGVSADRARFSIIAPHTFLSSRLAGIPGVKDSLMEEFGVHLITYDLPGFGESDPHPKRNLESSAIDMSFLADALGVDKFWIIGYSSGSKHAWAALRYIPDRLAGAAMFAPMVNPYDPLMTNEERRRTWNKWTRKRKLMYFLARSFPRLLGFFYQRSFLSGKHGQIDRWLSLSLGKRDKALMEDPIYEDFWQRDVEESIRQGNAKPFVEEAALQVSNWGFSLLDLKLQKRKYKRNVLNWLKAIFTETQEYTGFLGPIHIWQGMDDKVVPPSMTDFVHRVLPGAAVHKLPYEGHFTYIYFCDECHRQIFTTLFGTPQGPLSLSISLEVDPITLEANVELEQQEVVASSGDYATD