Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21785.t1 | XP_003610804.1 | 94.5 | 163 | 8 | 1 | 1 | 162 | 1 | 163 | 2.90E-78 | 301.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21785.t1 | B7FGX7 | 94.5 | 163 | 8 | 1 | 1 | 162 | 1 | 163 | 2.1e-78 | 301.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene21785 | 0.813859 | 2.07E-51 | -1.69E-46 |
| MS.gene049356 | MS.gene21785 | 0.80574 | 1.15E-49 | -1.69E-46 |
| MS.gene049491 | MS.gene21785 | 0.837258 | 5.78E-57 | -1.69E-46 |
| MS.gene049614 | MS.gene21785 | 0.822013 | 2.97E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene21785 | 0.808003 | 3.83E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene21785 | 0.804428 | 2.17E-49 | -1.69E-46 |
| MS.gene049910 | MS.gene21785 | 0.801086 | 1.06E-48 | -1.69E-46 |
| MS.gene050076 | MS.gene21785 | 0.821904 | 3.15E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene21785 | 0.851865 | 6.72E-61 | -1.69E-46 |
| MS.gene050397 | MS.gene21785 | 0.805382 | 1.37E-49 | -1.69E-46 |
| MS.gene050432 | MS.gene21785 | 0.820724 | 5.90E-53 | -1.69E-46 |
| MS.gene050464 | MS.gene21785 | 0.813194 | 2.90E-51 | -1.69E-46 |
| MS.gene050529 | MS.gene21785 | 0.800392 | 1.47E-48 | -1.69E-46 |
| MS.gene050670 | MS.gene21785 | 0.827018 | 1.97E-54 | -1.69E-46 |
| MS.gene050767 | MS.gene21785 | 0.824531 | 7.67E-54 | -1.69E-46 |
| MS.gene050770 | MS.gene21785 | 0.828498 | 8.69E-55 | -1.69E-46 |
| MS.gene05101 | MS.gene21785 | 0.834088 | 3.67E-56 | -1.69E-46 |
| MS.gene05105 | MS.gene21785 | 0.819942 | 8.91E-53 | -1.69E-46 |
| MS.gene051387 | MS.gene21785 | 0.80491 | 1.72E-49 | -1.69E-46 |
| MS.gene051471 | MS.gene21785 | 0.815259 | 1.01E-51 | -1.69E-46 |
| MS.gene051692 | MS.gene21785 | 0.814275 | 1.67E-51 | -1.69E-46 |
| MS.gene052078 | MS.gene21785 | 0.828188 | 1.03E-54 | -1.69E-46 |
| MS.gene052178 | MS.gene21785 | 0.81475 | 1.31E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene21785 | 0.854204 | 1.44E-61 | -1.69E-46 |
| MS.gene052253 | MS.gene21785 | 0.801238 | 9.90E-49 | -1.69E-46 |
| MS.gene052271 | MS.gene21785 | 0.802434 | 5.62E-49 | -1.69E-46 |
| MS.gene052290 | MS.gene21785 | 0.801287 | 9.67E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene21785 | 0.857592 | 1.47E-62 | -1.69E-46 |
| MS.gene052340 | MS.gene21785 | 0.848109 | 7.56E-60 | -1.69E-46 |
| MS.gene052379 | MS.gene21785 | 0.801058 | 1.08E-48 | -1.69E-46 |
| MS.gene052421 | MS.gene21785 | 0.806111 | 9.64E-50 | -1.69E-46 |
| MS.gene052481 | MS.gene21785 | 0.813171 | 2.93E-51 | -1.69E-46 |
| MS.gene052484 | MS.gene21785 | 0.823605 | 1.27E-53 | -1.69E-46 |
| MS.gene052485 | MS.gene21785 | 0.832192 | 1.09E-55 | -1.69E-46 |
| MS.gene053103 | MS.gene21785 | 0.855691 | 5.32E-62 | -1.69E-46 |
| MS.gene053104 | MS.gene21785 | 0.807181 | 5.73E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene21785 | 0.863553 | 2.29E-64 | -1.69E-46 |
| MS.gene053322 | MS.gene21785 | 0.836868 | 7.27E-57 | -1.69E-46 |
| MS.gene053449 | MS.gene21785 | 0.83262 | 8.52E-56 | -1.69E-46 |
| MS.gene053557 | MS.gene21785 | 0.824892 | 6.31E-54 | -1.69E-46 |
| MS.gene053813 | MS.gene21785 | 0.811879 | 5.61E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene21785 | 0.809871 | 1.53E-50 | -1.69E-46 |
| MS.gene053912 | MS.gene21785 | 0.811975 | 5.35E-51 | -1.69E-46 |
| MS.gene054123 | MS.gene21785 | 0.82409 | 9.74E-54 | -1.69E-46 |
| MS.gene054376 | MS.gene21785 | 0.815447 | 9.20E-52 | -1.69E-46 |
| MS.gene054802 | MS.gene21785 | 0.807489 | 4.93E-50 | -1.69E-46 |
| MS.gene054803 | MS.gene21785 | 0.806229 | 9.11E-50 | -1.69E-46 |
| MS.gene054804 | MS.gene21785 | 0.809906 | 1.50E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene21785 | 0.814385 | 1.58E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene21785 | 0.837272 | 5.73E-57 | -1.69E-46 |
| MS.gene055390 | MS.gene21785 | 0.809474 | 1.86E-50 | -1.69E-46 |
| MS.gene055412 | MS.gene21785 | 0.851184 | 1.05E-60 | -1.69E-46 |
| MS.gene055422 | MS.gene21785 | 0.839918 | 1.19E-57 | -1.69E-46 |
| MS.gene055428 | MS.gene21785 | 0.808285 | 3.34E-50 | -1.69E-46 |
| MS.gene055636 | MS.gene21785 | 0.805389 | 1.37E-49 | -1.69E-46 |
| MS.gene055647 | MS.gene21785 | 0.815637 | 8.35E-52 | -1.69E-46 |
| MS.gene05592 | MS.gene21785 | 0.832776 | 7.79E-56 | -1.69E-46 |
| MS.gene056191 | MS.gene21785 | 0.818398 | 2.00E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene21785 | 0.833391 | 5.48E-56 | -1.69E-46 |
| MS.gene056410 | MS.gene21785 | 0.819766 | 9.77E-53 | -1.69E-46 |
| MS.gene056609 | MS.gene21785 | 0.821702 | 3.51E-53 | -1.69E-46 |
| MS.gene057011 | MS.gene21785 | 0.818749 | 1.67E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene21785 | 0.816898 | 4.36E-52 | -1.69E-46 |
| MS.gene057123 | MS.gene21785 | 0.815686 | 8.14E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene21785 | 0.802719 | 4.91E-49 | -1.69E-46 |
| MS.gene057129 | MS.gene21785 | 0.819407 | 1.18E-52 | -1.69E-46 |
| MS.gene057146 | MS.gene21785 | 0.810629 | 1.05E-50 | -1.69E-46 |
| MS.gene057448 | MS.gene21785 | 0.843665 | 1.22E-58 | -1.69E-46 |
| MS.gene057449 | MS.gene21785 | 0.833928 | 4.02E-56 | -1.69E-46 |
| MS.gene057450 | MS.gene21785 | 0.854098 | 1.54E-61 | -1.69E-46 |
| MS.gene057823 | MS.gene21785 | 0.805387 | 1.37E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene21785 | 0.81631 | 5.91E-52 | -1.69E-46 |
| MS.gene058006 | MS.gene21785 | 0.825221 | 5.27E-54 | -1.69E-46 |
| MS.gene058082 | MS.gene21785 | 0.82654 | 2.57E-54 | -1.69E-46 |
| MS.gene05811 | MS.gene21785 | 0.848309 | 6.65E-60 | -1.69E-46 |
| MS.gene058276 | MS.gene21785 | 0.801518 | 8.67E-49 | -1.69E-46 |
| MS.gene058293 | MS.gene21785 | 0.863788 | 1.94E-64 | -1.69E-46 |
| MS.gene058660 | MS.gene21785 | 0.833535 | 5.04E-56 | -1.69E-46 |
| MS.gene058700 | MS.gene21785 | 0.801041 | 1.09E-48 | -1.69E-46 |
| MS.gene05886 | MS.gene21785 | 0.802298 | 6.00E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene21785 | 0.83504 | 2.11E-56 | -1.69E-46 |
| MS.gene05907 | MS.gene21785 | 0.834022 | 3.81E-56 | -1.69E-46 |
| MS.gene059326 | MS.gene21785 | 0.838854 | 2.25E-57 | -1.69E-46 |
| MS.gene059366 | MS.gene21785 | 0.830503 | 2.83E-55 | -1.69E-46 |
| MS.gene059518 | MS.gene21785 | 0.817102 | 3.92E-52 | -1.69E-46 |
| MS.gene059536 | MS.gene21785 | 0.811729 | 6.05E-51 | -1.69E-46 |
| MS.gene059597 | MS.gene21785 | 0.842016 | 3.34E-58 | -1.69E-46 |
| MS.gene059676 | MS.gene21785 | 0.880539 | 5.05E-70 | -1.69E-46 |
| MS.gene059688 | MS.gene21785 | 0.863703 | 2.06E-64 | -1.69E-46 |
| MS.gene059692 | MS.gene21785 | 0.871328 | 7.43E-67 | -1.69E-46 |
| MS.gene059695 | MS.gene21785 | 0.86841 | 6.67E-66 | -1.69E-46 |
| MS.gene059711 | MS.gene21785 | 0.822357 | 2.47E-53 | -1.69E-46 |
| MS.gene05984 | MS.gene21785 | 0.8236 | 1.27E-53 | -1.69E-46 |
| MS.gene059894 | MS.gene21785 | 0.863563 | 2.28E-64 | -1.69E-46 |
| MS.gene059960 | MS.gene21785 | 0.830356 | 3.08E-55 | -1.69E-46 |
| MS.gene059974 | MS.gene21785 | 0.82692 | 2.08E-54 | -1.69E-46 |
| MS.gene06037 | MS.gene21785 | 0.803409 | 3.54E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene21785 | 0.80242 | 5.66E-49 | -1.69E-46 |
| MS.gene060818 | MS.gene21785 | 0.841359 | 4.99E-58 | -1.69E-46 |
| MS.gene060837 | MS.gene21785 | 0.816762 | 4.68E-52 | -1.69E-46 |
| MS.gene060986 | MS.gene21785 | 0.802048 | 6.75E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene21785 | 0.845513 | 3.88E-59 | -1.69E-46 |
| MS.gene061051 | MS.gene21785 | -0.831773 | 1.38E-55 | -1.69E-46 |
| MS.gene061159 | MS.gene21785 | 0.828611 | 8.17E-55 | -1.69E-46 |
| MS.gene061200 | MS.gene21785 | 0.824085 | 9.77E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21785.t1 | MTR_5g007210 | 94.479 | 163 | 8 | 1 | 1 | 162 | 1 | 163 | 3.56e-109 | 308 |
| MS.gene21785.t1 | MTR_5g024680 | 43.564 | 101 | 51 | 3 | 50 | 145 | 51 | 150 | 1.27e-17 | 75.5 |
| MS.gene21785.t1 | MTR_3g115930 | 42.857 | 98 | 52 | 3 | 61 | 156 | 68 | 163 | 5.45e-16 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21785.t1 | AT5G16660 | 53.459 | 159 | 69 | 4 | 6 | 160 | 8 | 165 | 1.22e-50 | 160 |
| MS.gene21785.t1 | AT5G16660 | 54.375 | 160 | 66 | 6 | 6 | 161 | 8 | 164 | 4.14e-46 | 148 |
| MS.gene21785.t1 | AT3G02900 | 48.466 | 163 | 68 | 5 | 6 | 161 | 7 | 160 | 2.38e-41 | 136 |
| MS.gene21785.t1 | AT3G02900 | 51.163 | 129 | 54 | 3 | 40 | 161 | 40 | 166 | 8.43e-37 | 125 |
| MS.gene21785.t1 | AT1G42960 | 41.228 | 114 | 59 | 4 | 49 | 156 | 51 | 162 | 1.84e-19 | 80.5 |
Find 48 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGTTGCTGGCTTTCTTC+TGG | 0.108341 | 5.2:+1642933 | MS.gene21785:CDS |
| CTGCTAAATGAAGATGAATA+TGG | 0.203723 | 5.2:+1644189 | MS.gene21785:CDS |
| CTTCAAATGCCTTCAAATTC+AGG | 0.204641 | 5.2:-1644474 | None:intergenic |
| AGAGGTGGGGATTTGGTTGC+TGG | 0.280443 | 5.2:+1642922 | MS.gene21785:CDS |
| TTGGTTGCTGGCTTTCTTCT+GGG | 0.303767 | 5.2:+1642934 | MS.gene21785:CDS |
| CTGCACGAACCGGTGAAATA+AGG | 0.322738 | 5.2:-1642035 | None:intergenic |
| TGATAACAGAGGTGGGGATT+TGG | 0.357687 | 5.2:+1642915 | MS.gene21785:CDS |
| AGCCCTTCGTCATAATAATA+AGG | 0.364499 | 5.2:-1644234 | None:intergenic |
| GCGCCATTATCGATTTCTTC+AGG | 0.366705 | 5.2:+1641526 | MS.gene21785:CDS |
| ATTCAGGATCACTTTCTAAA+GGG | 0.373701 | 5.2:-1644458 | None:intergenic |
| TATCAATGGCAGAATTTAGT+TGG | 0.383082 | 5.2:-1644389 | None:intergenic |
| CGGTGAAATAAGGTTCCTTC+TGG | 0.390363 | 5.2:-1642025 | None:intergenic |
| GAAAGTGATCCTGAATTTGA+AGG | 0.404369 | 5.2:+1644465 | MS.gene21785:CDS |
| TTGGCCTATCTTATCATTCA+AGG | 0.409252 | 5.2:-1644370 | None:intergenic |
| AAGCGTAATTCATCTGTGTT+TGG | 0.421907 | 5.2:+1641961 | MS.gene21785:CDS |
| CGCTTTGTTGAAAACAGCTC+AGG | 0.422912 | 5.2:-1641943 | None:intergenic |
| AATTCAGGATCACTTTCTAA+AGG | 0.440983 | 5.2:-1644459 | None:intergenic |
| ATAATAATAAGGTGGTCTTC+TGG | 0.441088 | 5.2:-1644223 | None:intergenic |
| TACCGTTGTTCTGCACGAAC+CGG | 0.449371 | 5.2:-1642045 | None:intergenic |
| CTTTGAACAGCAGCAAGCTT+AGG | 0.449964 | 5.2:-1641985 | None:intergenic |
| TTACCTGAAGAAATCGATAA+TGG | 0.460813 | 5.2:-1641529 | None:intergenic |
| GTTTCTGAATGCAGAGGACC+AGG | 0.463024 | 5.2:+1644343 | MS.gene21785:intron |
| TGCTAAATGAAGATGAATAT+GGG | 0.463822 | 5.2:+1644190 | MS.gene21785:CDS |
| GAGACCTTGAATGATAAGAT+AGG | 0.479761 | 5.2:+1644366 | MS.gene21785:CDS |
| CAGAAGGAACCTTATTTCAC+CGG | 0.501192 | 5.2:+1642026 | MS.gene21785:CDS |
| CTTATCATTCAAGGTCTCCC+TGG | 0.516050 | 5.2:-1644361 | None:intergenic |
| CTAAGCTTGCTGCTGTTCAA+AGG | 0.526007 | 5.2:+1641986 | MS.gene21785:CDS |
| CACCTTATTATTATGACGAA+GGG | 0.542517 | 5.2:+1644232 | MS.gene21785:CDS |
| ACGTACAGATATATTATCAA+TGG | 0.553012 | 5.2:-1644403 | None:intergenic |
| AAGATGAATATGGGTTTCGT+AGG | 0.554302 | 5.2:+1644199 | MS.gene21785:CDS |
| TAAGGTTCCTTCTGGTCACA+AGG | 0.558149 | 5.2:-1642017 | None:intergenic |
| TTCAGGATCACTTTCTAAAG+GGG | 0.565814 | 5.2:-1644457 | None:intergenic |
| CTTTCTAAAGGGGCAGCAGT+AGG | 0.569227 | 5.2:-1644447 | None:intergenic |
| CACCGGTTCGTGCAGAACAA+CGG | 0.572053 | 5.2:+1642043 | MS.gene21785:CDS |
| TGGCGCGAATGAAGTTGCCA+TGG | 0.574110 | 5.2:-1641509 | None:intergenic |
| AATCAAACCTTGTGACCAGA+AGG | 0.589168 | 5.2:+1642010 | MS.gene21785:CDS |
| CCACCTTATTATTATGACGA+AGG | 0.599010 | 5.2:+1644231 | MS.gene21785:CDS |
| GTTGCTGGCTTTCTTCTGGG+TGG | 0.601949 | 5.2:+1642937 | MS.gene21785:CDS |
| TTGTGCAGTGATAACAGAGG+TGG | 0.604543 | 5.2:+1642907 | MS.gene21785:intron |
| TTATTATGACGAAGGGCTAG+AGG | 0.609430 | 5.2:+1644239 | MS.gene21785:CDS |
| TGTGCAGTGATAACAGAGGT+GGG | 0.614866 | 5.2:+1642908 | MS.gene21785:intron |
| AGATGAATATGGGTTTCGTA+GGG | 0.632129 | 5.2:+1644200 | MS.gene21785:CDS |
| GGCGCGAATGAAGTTGCCAT+GGG | 0.638975 | 5.2:-1641508 | None:intergenic |
| AATATATCTGTACGTCTGAG+AGG | 0.656883 | 5.2:+1644411 | MS.gene21785:CDS |
| GTGCAGTGATAACAGAGGTG+GGG | 0.664089 | 5.2:+1642909 | MS.gene21785:intron |
| CCTTCGTCATAATAATAAGG+TGG | 0.668403 | 5.2:-1644231 | None:intergenic |
| TTTCTGAATGCAGAGGACCA+GGG | 0.699975 | 5.2:+1644344 | MS.gene21785:intron |
| CCTTTGTGCAGTGATAACAG+AGG | 0.741745 | 5.2:+1642904 | MS.gene21785:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTATAAACTTAATTACAA+AGG | - | chr5.2:1643293-1643312 | None:intergenic | 15.0% |
| !!! | ACTTCATTGAATTTAATTTT+AGG | + | chr5.2:1641617-1641636 | MS.gene21785:intron | 15.0% |
| !!! | ATATGTTTTTTTCAAACAAA+TGG | + | chr5.2:1642709-1642728 | MS.gene21785:intron | 15.0% |
| !!! | ATTCAATATTTTTGTGTAAT+TGG | + | chr5.2:1644286-1644305 | MS.gene21785:intron | 15.0% |
| !!! | CATTTTCACTTAAAATTTAA+AGG | + | chr5.2:1642661-1642680 | MS.gene21785:intron | 15.0% |
| !!! | CTTCATTGAATTTAATTTTA+GGG | + | chr5.2:1641618-1641637 | MS.gene21785:intron | 15.0% |
| !!! | CTTTAAATTTTAAGTGAAAA+TGG | - | chr5.2:1642663-1642682 | None:intergenic | 15.0% |
| !!! | TAATAATAGCTTAGATTTTT+CGG | + | chr5.2:1641760-1641779 | MS.gene21785:intron | 15.0% |
| !! | AAAAAAAAAAAAGACTCGTA+TGG | + | chr5.2:1643591-1643610 | MS.gene21785:intron | 20.0% |
| !! | AAATATTGAATATAAAGCCA+AGG | - | chr5.2:1644277-1644296 | None:intergenic | 20.0% |
| !! | AATATTGAATATAAAGCCAA+GGG | - | chr5.2:1644276-1644295 | None:intergenic | 20.0% |
| !! | AATCATAATCACAATTGAAA+TGG | - | chr5.2:1641862-1641881 | None:intergenic | 20.0% |
| !! | AGAAGATATATTATCATTGA+TGG | - | chr5.2:1643560-1643579 | None:intergenic | 20.0% |
| !! | TAGAATAATAAACGAAGAAA+TGG | - | chr5.2:1641675-1641694 | None:intergenic | 20.0% |
| !! | TGAATTCGAAAAACAAAAAA+AGG | - | chr5.2:1641826-1641845 | None:intergenic | 20.0% |
| !! | TTACAATAATCAATTTACGT+CGG | + | chr5.2:1641709-1641728 | MS.gene21785:intron | 20.0% |
| !!! | TAAACTTGTGTCAATTTTTA+TGG | + | chr5.2:1643362-1643381 | MS.gene21785:intron | 20.0% |
| ! | AAAAATATCATGAAAGAGAG+AGG | - | chr5.2:1642752-1642771 | None:intergenic | 25.0% |
| ! | ACGTACAGATATATTATCAA+TGG | - | chr5.2:1644406-1644425 | None:intergenic | 25.0% |
| ! | AGATAAGCTAGAACTATATA+AGG | - | chr5.2:1642448-1642467 | None:intergenic | 25.0% |
| ! | AGGGTTTATGTTAATTCTTA+TGG | + | chr5.2:1641637-1641656 | MS.gene21785:intron | 25.0% |
| ! | AGTGAATATTAGAAACGAAA+AGG | - | chr5.2:1641565-1641584 | None:intergenic | 25.0% |
| ! | ATATACTATGAGCTTCTAAA+TGG | - | chr5.2:1644139-1644158 | None:intergenic | 25.0% |
| ! | ATTTGCAATAAAACTGAAGT+AGG | - | chr5.2:1643013-1643032 | None:intergenic | 25.0% |
| ! | GTGAATATTAGAAACGAAAA+GGG | - | chr5.2:1641564-1641583 | None:intergenic | 25.0% |
| ! | GTTATTATGTCTTAAGTACT+CGG | + | chr5.2:1643960-1643979 | MS.gene21785:intron | 25.0% |
| ! | TAAGACATAATAACAAGAGA+GGG | - | chr5.2:1643954-1643973 | None:intergenic | 25.0% |
| ! | TAGAAGCTCATAGTATATTA+TGG | + | chr5.2:1644141-1644160 | MS.gene21785:intron | 25.0% |
| ! | TGCTAAATGAAGATGAATAT+GGG | + | chr5.2:1644190-1644209 | MS.gene21785:CDS | 25.0% |
| ! | TTAAGACATAATAACAAGAG+AGG | - | chr5.2:1643955-1643974 | None:intergenic | 25.0% |
| !! | ATCTTATAGGTTGCTTATTT+TGG | + | chr5.2:1642846-1642865 | MS.gene21785:intron | 25.0% |
| !! | ATGTTTAGTTATTGACTGTT+TGG | + | chr5.2:1642127-1642146 | MS.gene21785:intron | 25.0% |
| !! | CAAGAATCTCTATTTACTTT+TGG | + | chr5.2:1642390-1642409 | MS.gene21785:intron | 25.0% |
| !! | GAATTAACTTTTCAAAGGAT+AGG | + | chr5.2:1643769-1643788 | MS.gene21785:intron | 25.0% |
| !! | GAGTATTGCTGTTAATATAA+TGG | - | chr5.2:1643621-1643640 | None:intergenic | 25.0% |
| !!! | AATTGATTTGATTTTGCAGT+TGG | + | chr5.2:1641901-1641920 | MS.gene21785:intron | 25.0% |
| !!! | GTTGTTTTCATAAGCTATTT+TGG | - | chr5.2:1642259-1642278 | None:intergenic | 25.0% |
| !!! | TTAAGTTTATAGTTTGCTGA+TGG | + | chr5.2:1643299-1643318 | MS.gene21785:intron | 25.0% |
| !!! | TTATTTTAGCAAAACGTTGA+AGG | + | chr5.2:1643985-1644004 | MS.gene21785:intron | 25.0% |
| !!! | TTTTTCAAACAAATGGTGAA+TGG | + | chr5.2:1642716-1642735 | MS.gene21785:intron | 25.0% |
| AATGGTACTAAACTCACATA+TGG | - | chr5.2:1643526-1643545 | None:intergenic | 30.0% | |
| AATTCAGGATCACTTTCTAA+AGG | - | chr5.2:1644462-1644481 | None:intergenic | 30.0% | |
| AGAGAGCTTTCAAAAAAGTT+GGG | + | chr5.2:1643334-1643353 | MS.gene21785:intron | 30.0% | |
| ATAATAATAAGGTGGTCTTC+TGG | - | chr5.2:1644226-1644245 | None:intergenic | 30.0% | |
| ATGGTACTAAACTCACATAT+GGG | - | chr5.2:1643525-1643544 | None:intergenic | 30.0% | |
| ATTCAGGATCACTTTCTAAA+GGG | - | chr5.2:1644461-1644480 | None:intergenic | 30.0% | |
| ATTGTATTCTTAGAGAGTAG+TGG | + | chr5.2:1643428-1643447 | MS.gene21785:intron | 30.0% | |
| CACCTTATTATTATGACGAA+GGG | + | chr5.2:1644232-1644251 | MS.gene21785:CDS | 30.0% | |
| CATTAAACAAATGTTGCACT+AGG | - | chr5.2:1643738-1643757 | None:intergenic | 30.0% | |
| CTGCTAAATGAAGATGAATA+TGG | + | chr5.2:1644189-1644208 | MS.gene21785:CDS | 30.0% | |
| GGATTTCTAATTATAAGCCA+CGG | - | chr5.2:1642077-1642096 | None:intergenic | 30.0% | |
| TATCAATGGCAGAATTTAGT+TGG | - | chr5.2:1644392-1644411 | None:intergenic | 30.0% | |
| TTACCTGAAGAAATCGATAA+TGG | - | chr5.2:1641532-1641551 | None:intergenic | 30.0% | |
| TTGATGGAGATAAGTACAAA+TGG | - | chr5.2:1643544-1643563 | None:intergenic | 30.0% | |
| TTGTATATAAATGCCCTGTT+TGG | - | chr5.2:1642365-1642384 | None:intergenic | 30.0% | |
| TTGTGTAATTGGTATATGCT+GGG | + | chr5.2:1644297-1644316 | MS.gene21785:intron | 30.0% | |
| TTTGTGTAATTGGTATATGC+TGG | + | chr5.2:1644296-1644315 | MS.gene21785:intron | 30.0% | |
| ! | AAACAGGGCATTTATATACA+AGG | + | chr5.2:1642364-1642383 | MS.gene21785:intron | 30.0% |
| ! | AAGTATTTTCACACTAGATG+GGG | + | chr5.2:1642487-1642506 | MS.gene21785:intron | 30.0% |
| ! | ACAAGTATTTTCACACTAGA+TGG | + | chr5.2:1642485-1642504 | MS.gene21785:intron | 30.0% |
| ! | ACTACTAACTTTTCCATCTT+TGG | + | chr5.2:1643927-1643946 | MS.gene21785:intron | 30.0% |
| ! | AGGCTCTCTTTTTATAAGTT+AGG | - | chr5.2:1643273-1643292 | None:intergenic | 30.0% |
| ! | CAAGTATTTTCACACTAGAT+GGG | + | chr5.2:1642486-1642505 | MS.gene21785:intron | 30.0% |
| ! | CTATCCAAAAAGTATGAGAA+AGG | + | chr5.2:1643071-1643090 | MS.gene21785:intron | 30.0% |
| ! | CTCTAAGAATACAATCCAAT+GGG | - | chr5.2:1643423-1643442 | None:intergenic | 30.0% |
| ! | GAGCTGAATTAACTTTTCAA+AGG | + | chr5.2:1643764-1643783 | MS.gene21785:intron | 30.0% |
| ! | TCTCTAAGAATACAATCCAA+TGG | - | chr5.2:1643424-1643443 | None:intergenic | 30.0% |
| ! | TCTTCCTTTCTCATACTTTT+TGG | - | chr5.2:1643078-1643097 | None:intergenic | 30.0% |
| AAACAGTCACACAAAACCTA+TGG | - | chr5.2:1642179-1642198 | None:intergenic | 35.0% | |
| AAGATGAATATGGGTTTCGT+AGG | + | chr5.2:1644199-1644218 | MS.gene21785:CDS | 35.0% | |
| AAGCGTAATTCATCTGTGTT+TGG | + | chr5.2:1641961-1641980 | MS.gene21785:CDS | 35.0% | |
| AATATATCTGTACGTCTGAG+AGG | + | chr5.2:1644411-1644430 | MS.gene21785:CDS | 35.0% | |
| ACCTAGAAACTAGTCCAAAT+TGG | - | chr5.2:1643215-1643234 | None:intergenic | 35.0% | |
| AGAAAATGAATTCGAAGTCG+GGG | + | chr5.2:1642097-1642116 | MS.gene21785:intron | 35.0% | |
| AGAAACGAAAAGGGAAAAAG+AGG | - | chr5.2:1641555-1641574 | None:intergenic | 35.0% | |
| AGATGAATATGGGTTTCGTA+GGG | + | chr5.2:1644200-1644219 | MS.gene21785:CDS | 35.0% | |
| AGCCCTTCGTCATAATAATA+AGG | - | chr5.2:1644237-1644256 | None:intergenic | 35.0% | |
| AGTATACACTGAGAGAAAGT+CGG | - | chr5.2:1642687-1642706 | None:intergenic | 35.0% | |
| CAATATGCTGCATTGCAAAT+GGG | + | chr5.2:1643848-1643867 | MS.gene21785:intron | 35.0% | |
| CAGAAAATGAATTCGAAGTC+GGG | + | chr5.2:1642096-1642115 | MS.gene21785:intron | 35.0% | |
| CCACCTTATTATTATGACGA+AGG | + | chr5.2:1644231-1644250 | MS.gene21785:CDS | 35.0% | |
| CCAGAAAATGAATTCGAAGT+CGG | + | chr5.2:1642095-1642114 | MS.gene21785:intron | 35.0% | |
| CCATGTGATAAATGACTACT+CGG | + | chr5.2:1643106-1643125 | MS.gene21785:intron | 35.0% | |
| CCTAGAAACTAGTCCAAATT+GGG | - | chr5.2:1643214-1643233 | None:intergenic | 35.0% | |
| CCTTCGTCATAATAATAAGG+TGG | - | chr5.2:1644234-1644253 | None:intergenic | 35.0% | |
| GAAAGTGATCCTGAATTTGA+AGG | + | chr5.2:1644465-1644484 | MS.gene21785:CDS | 35.0% | |
| GAAGTATAAGCGGTAATAAC+AGG | - | chr5.2:1643495-1643514 | None:intergenic | 35.0% | |
| GACCAGATGTGAAGAAATAA+TGG | + | chr5.2:1642584-1642603 | MS.gene21785:intron | 35.0% | |
| GAGACCTTGAATGATAAGAT+AGG | + | chr5.2:1644366-1644385 | MS.gene21785:CDS | 35.0% | |
| GAGAGAGCTTTCAAAAAAGT+TGG | + | chr5.2:1643333-1643352 | MS.gene21785:intron | 35.0% | |
| GCAACCTATAAGATCAAGAA+AGG | - | chr5.2:1642840-1642859 | None:intergenic | 35.0% | |
| TAGGAAAACAGCTTATGACA+TGG | + | chr5.2:1642208-1642227 | MS.gene21785:intron | 35.0% | |
| TCAAACAAATGGTGAATGGT+TGG | + | chr5.2:1642720-1642739 | MS.gene21785:intron | 35.0% | |
| TCATTAACTACAGCCCAATT+TGG | + | chr5.2:1643198-1643217 | MS.gene21785:intron | 35.0% | |
| TGAAGTGATGAAGAGTTAGT+AGG | - | chr5.2:1643706-1643725 | None:intergenic | 35.0% | |
| TGCACCTTTCTTGATCTTAT+AGG | + | chr5.2:1642833-1642852 | MS.gene21785:intron | 35.0% | |
| TGCCATTCATAAAACAGACA+TGG | - | chr5.2:1643394-1643413 | None:intergenic | 35.0% | |
| TGCGAATCTAAGCAATTCAT+GGG | - | chr5.2:1641791-1641810 | None:intergenic | 35.0% | |
| TGGTACTAAACTCACATATG+GGG | - | chr5.2:1643524-1643543 | None:intergenic | 35.0% | |
| TTCAAACATAGCAACTAGCA+TGG | - | chr5.2:1642550-1642569 | None:intergenic | 35.0% | |
| TTGAGCTTATCTATTGCCAT+AGG | + | chr5.2:1642160-1642179 | MS.gene21785:intron | 35.0% | |
| TTGCGAATCTAAGCAATTCA+TGG | - | chr5.2:1641792-1641811 | None:intergenic | 35.0% | |
| TTGGCCTATCTTATCATTCA+AGG | - | chr5.2:1644373-1644392 | None:intergenic | 35.0% | |
| ! | CACCATTATTTCTTCACATC+TGG | - | chr5.2:1642589-1642608 | None:intergenic | 35.0% |
| ! | CTCCATGTCTGTTTTATGAA+TGG | + | chr5.2:1643389-1643408 | MS.gene21785:intron | 35.0% |
| ! | TTCAGGATCACTTTCTAAAG+GGG | - | chr5.2:1644460-1644479 | None:intergenic | 35.0% |
| !! | TGATTTGATTTTGCAGTTGG+CGG | + | chr5.2:1641904-1641923 | MS.gene21785:intron | 35.0% |
| AAGTAGGAAGAAATCACCTG+AGG | - | chr5.2:1642997-1643016 | None:intergenic | 40.0% | |
| AATCAAACCTTGTGACCAGA+AGG | + | chr5.2:1642010-1642029 | MS.gene21785:CDS | 40.0% | |
| ACTCTTTGCTGAGACAAACT+AGG | - | chr5.2:1644039-1644058 | None:intergenic | 40.0% | |
| AGTGAGTTGTTTGTCCAAAC+AGG | + | chr5.2:1642348-1642367 | MS.gene21785:intron | 40.0% | |
| CCGAGTAGTCATTTATCACA+TGG | - | chr5.2:1643109-1643128 | None:intergenic | 40.0% | |
| GAAAATGAATTCGAAGTCGG+GGG | + | chr5.2:1642098-1642117 | MS.gene21785:intron | 40.0% | |
| GATACAAGTGTGACATACAG+AGG | - | chr5.2:1642629-1642648 | None:intergenic | 40.0% | |
| GCAATATGCTGCATTGCAAA+TGG | + | chr5.2:1643847-1643866 | MS.gene21785:intron | 40.0% | |
| GGGGATGAATGAAGTATAAG+CGG | - | chr5.2:1643505-1643524 | None:intergenic | 40.0% | |
| GTGACTGTTTGAGAGAACTT+AGG | + | chr5.2:1642189-1642208 | MS.gene21785:intron | 40.0% | |
| GTGAGTTGTTTGTCCAAACA+GGG | + | chr5.2:1642349-1642368 | MS.gene21785:intron | 40.0% | |
| TGAATGGCATGTAAACCCAT+TGG | + | chr5.2:1643405-1643424 | MS.gene21785:intron | 40.0% | |
| TGCACAAAGGAGACAGTTAA+TGG | - | chr5.2:1642894-1642913 | None:intergenic | 40.0% | |
| TTATTATGACGAAGGGCTAG+AGG | + | chr5.2:1644239-1644258 | MS.gene21785:CDS | 40.0% | |
| ! | CAGAAGGAACCTTATTTCAC+CGG | + | chr5.2:1642026-1642045 | MS.gene21785:CDS | 40.0% |
| ! | CCGACTTCGAATTCATTTTC+TGG | - | chr5.2:1642098-1642117 | None:intergenic | 40.0% |
| ! | CTTTTGAATGCTTCGAGCAT+TGG | + | chr5.2:1642795-1642814 | MS.gene21785:intron | 40.0% |
| !! | AGTTTGCTGATGGAAGAGTT+AGG | + | chr5.2:1643309-1643328 | MS.gene21785:intron | 40.0% |
| !! | CCCAATTTGGACTAGTTTCT+AGG | + | chr5.2:1643211-1643230 | MS.gene21785:intron | 40.0% |
| !! | TATGCTGTTTCTGAATGCAG+AGG | + | chr5.2:1644337-1644356 | MS.gene21785:intron | 40.0% |
| AACAAGAGAGGGTCCAAAGA+TGG | - | chr5.2:1643943-1643962 | None:intergenic | 45.0% | |
| ACGAAGGGCTAGAGGTAATT+TGG | + | chr5.2:1644247-1644266 | MS.gene21785:intron | 45.0% | |
| CCTCTGTTATCACTGCACAA+AGG | - | chr5.2:1642907-1642926 | None:intergenic | 45.0% | |
| CCTTTGTGCAGTGATAACAG+AGG | + | chr5.2:1642904-1642923 | MS.gene21785:intron | 45.0% | |
| CGGTGAAATAAGGTTCCTTC+TGG | - | chr5.2:1642028-1642047 | None:intergenic | 45.0% | |
| CTTATCATTCAAGGTCTCCC+TGG | - | chr5.2:1644364-1644383 | None:intergenic | 45.0% | |
| CTTTGAACAGCAGCAAGCTT+AGG | - | chr5.2:1641988-1642007 | None:intergenic | 45.0% | |
| TAAGGTTCCTTCTGGTCACA+AGG | - | chr5.2:1642020-1642039 | None:intergenic | 45.0% | |
| TGATAACAGAGGTGGGGATT+TGG | + | chr5.2:1642915-1642934 | MS.gene21785:CDS | 45.0% | |
| TGTGCAGTGATAACAGAGGT+GGG | + | chr5.2:1642908-1642927 | MS.gene21785:intron | 45.0% | |
| TTGTGCAGTGATAACAGAGG+TGG | + | chr5.2:1642907-1642926 | MS.gene21785:intron | 45.0% | |
| TTTCTGAATGCAGAGGACCA+GGG | + | chr5.2:1644344-1644363 | MS.gene21785:intron | 45.0% | |
| ! | AGAGGTAATTTGGCTTCCCT+TGG | + | chr5.2:1644257-1644276 | MS.gene21785:intron | 45.0% |
| ! | CGCTTTGTTGAAAACAGCTC+AGG | - | chr5.2:1641946-1641965 | None:intergenic | 45.0% |
| !! | CTAAGCTTGCTGCTGTTCAA+AGG | + | chr5.2:1641986-1642005 | MS.gene21785:CDS | 45.0% |
| !! | GCGCCATTATCGATTTCTTC+AGG | + | chr5.2:1641526-1641545 | MS.gene21785:CDS | 45.0% |
| !! | GGCTTATGTTTTTGCTCCTC+AGG | + | chr5.2:1642978-1642997 | MS.gene21785:CDS | 45.0% |
| !! | TTGGTTGCTGGCTTTCTTCT+GGG | + | chr5.2:1642934-1642953 | MS.gene21785:CDS | 45.0% |
| !! | TTTGGTTGCTGGCTTTCTTC+TGG | + | chr5.2:1642933-1642952 | MS.gene21785:CDS | 45.0% |
| !!! | CTTCTGGGTGGTGCTATTTT+CGG | + | chr5.2:1642949-1642968 | MS.gene21785:CDS | 45.0% |
| !!! | GCTGGTTGGGTGCATTTTTT+GGG | + | chr5.2:1643465-1643484 | MS.gene21785:intron | 45.0% |
| !!! | TGCTGGTTGGGTGCATTTTT+TGG | + | chr5.2:1643464-1643483 | MS.gene21785:intron | 45.0% |
| !!! | TGGTGCTATTTTCGGAACTC+TGG | + | chr5.2:1642957-1642976 | MS.gene21785:CDS | 45.0% |
| CTGCACGAACCGGTGAAATA+AGG | - | chr5.2:1642038-1642057 | None:intergenic | 50.0% | |
| GAACAACGGTATGTCATCCG+TGG | + | chr5.2:1642057-1642076 | MS.gene21785:intron | 50.0% | |
| GTGCAGTGATAACAGAGGTG+GGG | + | chr5.2:1642909-1642928 | MS.gene21785:intron | 50.0% | |
| GTTTCTGAATGCAGAGGACC+AGG | + | chr5.2:1644343-1644362 | MS.gene21785:intron | 50.0% | |
| TACCGTTGTTCTGCACGAAC+CGG | - | chr5.2:1642048-1642067 | None:intergenic | 50.0% | |
| ! | CTTTCTAAAGGGGCAGCAGT+AGG | - | chr5.2:1644450-1644469 | None:intergenic | 50.0% |
| TAGAGAGTAGTGGCGCCTCT+GGG | + | chr5.2:1643438-1643457 | MS.gene21785:intron | 55.0% | |
| TTAGAGAGTAGTGGCGCCTC+TGG | + | chr5.2:1643437-1643456 | MS.gene21785:intron | 55.0% | |
| ! | AGAGGTGGGGATTTGGTTGC+TGG | + | chr5.2:1642922-1642941 | MS.gene21785:CDS | 55.0% |
| !! | CACCGGTTCGTGCAGAACAA+CGG | + | chr5.2:1642043-1642062 | MS.gene21785:CDS | 55.0% |
| !! | GTTGCTGGCTTTCTTCTGGG+TGG | + | chr5.2:1642937-1642956 | MS.gene21785:CDS | 55.0% |
| ACCCAACCAGCACAGCCCAG+AGG | - | chr5.2:1643456-1643475 | None:intergenic | 65.0% | |
| !! | GCCTCTGGGCTGTGCTGGTT+GGG | + | chr5.2:1643452-1643471 | MS.gene21785:intron | 65.0% |
| ! | CGCCTCTGGGCTGTGCTGGT+TGG | + | chr5.2:1643451-1643470 | MS.gene21785:intron | 70.0% |
| GTGGCGCCTCTGGGCTGTGC+TGG | + | chr5.2:1643447-1643466 | MS.gene21785:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 1641511 | 1644494 | 1641511 | ID=MS.gene21785 |
| chr5.2 | mRNA | 1641511 | 1644494 | 1641511 | ID=MS.gene21785.t1;Parent=MS.gene21785 |
| chr5.2 | exon | 1641511 | 1641547 | 1641511 | ID=MS.gene21785.t1.exon1;Parent=MS.gene21785.t1 |
| chr5.2 | CDS | 1641511 | 1641547 | 1641511 | ID=cds.MS.gene21785.t1;Parent=MS.gene21785.t1 |
| chr5.2 | exon | 1641920 | 1642064 | 1641920 | ID=MS.gene21785.t1.exon2;Parent=MS.gene21785.t1 |
| chr5.2 | CDS | 1641920 | 1642064 | 1641920 | ID=cds.MS.gene21785.t1;Parent=MS.gene21785.t1 |
| chr5.2 | exon | 1642915 | 1642999 | 1642915 | ID=MS.gene21785.t1.exon3;Parent=MS.gene21785.t1 |
| chr5.2 | CDS | 1642915 | 1642999 | 1642915 | ID=cds.MS.gene21785.t1;Parent=MS.gene21785.t1 |
| chr5.2 | exon | 1644177 | 1644260 | 1644177 | ID=MS.gene21785.t1.exon4;Parent=MS.gene21785.t1 |
| chr5.2 | CDS | 1644177 | 1644260 | 1644177 | ID=cds.MS.gene21785.t1;Parent=MS.gene21785.t1 |
| chr5.2 | exon | 1644357 | 1644494 | 1644357 | ID=MS.gene21785.t1.exon5;Parent=MS.gene21785.t1 |
| chr5.2 | CDS | 1644357 | 1644494 | 1644357 | ID=cds.MS.gene21785.t1;Parent=MS.gene21785.t1 |
| Gene Sequence |
| Protein sequence |
