Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22389.t1 | XP_013450011.1 | 97.7 | 304 | 7 | 0 | 1 | 304 | 1 | 304 | 7.30E-168 | 599.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22389.t1 | A0A072U2X2 | 97.7 | 304 | 7 | 0 | 1 | 304 | 1 | 304 | 5.3e-168 | 599.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene22389 | 0.817757 | 2.79E-52 | -1.69E-46 |
| MS.gene049159 | MS.gene22389 | 0.814858 | 1.24E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene22389 | 0.816829 | 4.52E-52 | -1.69E-46 |
| MS.gene049404 | MS.gene22389 | 0.821356 | 4.22E-53 | -1.69E-46 |
| MS.gene049435 | MS.gene22389 | 0.821794 | 3.34E-53 | -1.69E-46 |
| MS.gene049850 | MS.gene22389 | 0.812911 | 3.34E-51 | -1.69E-46 |
| MS.gene050020 | MS.gene22389 | 0.801867 | 7.35E-49 | -1.69E-46 |
| MS.gene050156 | MS.gene22389 | 0.800573 | 1.35E-48 | -1.69E-46 |
| MS.gene05016 | MS.gene22389 | 0.801092 | 1.06E-48 | -1.69E-46 |
| MS.gene050442 | MS.gene22389 | 0.832007 | 1.21E-55 | -1.69E-46 |
| MS.gene050780 | MS.gene22389 | 0.803395 | 3.56E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene22389 | 0.848072 | 7.74E-60 | -1.69E-46 |
| MS.gene050808 | MS.gene22389 | 0.818391 | 2.01E-52 | -1.69E-46 |
| MS.gene050826 | MS.gene22389 | 0.813317 | 2.72E-51 | -1.69E-46 |
| MS.gene051180 | MS.gene22389 | 0.816931 | 4.29E-52 | -1.69E-46 |
| MS.gene051243 | MS.gene22389 | 0.800006 | 1.76E-48 | -1.69E-46 |
| MS.gene051247 | MS.gene22389 | 0.829265 | 5.67E-55 | -1.69E-46 |
| MS.gene051719 | MS.gene22389 | 0.83038 | 3.03E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene22389 | 0.811743 | 6.01E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene22389 | 0.812281 | 4.59E-51 | -1.69E-46 |
| MS.gene052012 | MS.gene22389 | 0.800276 | 1.55E-48 | -1.69E-46 |
| MS.gene052323 | MS.gene22389 | 0.836504 | 9.00E-57 | -1.69E-46 |
| MS.gene052582 | MS.gene22389 | 0.817182 | 3.76E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene22389 | 0.81262 | 3.87E-51 | -1.69E-46 |
| MS.gene052611 | MS.gene22389 | 0.801201 | 1.01E-48 | -1.69E-46 |
| MS.gene052665 | MS.gene22389 | 0.830313 | 3.15E-55 | -1.69E-46 |
| MS.gene052773 | MS.gene22389 | 0.829559 | 4.81E-55 | -1.69E-46 |
| MS.gene052863 | MS.gene22389 | 0.814754 | 1.31E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene22389 | 0.831178 | 1.93E-55 | -1.69E-46 |
| MS.gene053226 | MS.gene22389 | 0.833548 | 5.01E-56 | -1.69E-46 |
| MS.gene053563 | MS.gene22389 | 0.816927 | 4.30E-52 | -1.69E-46 |
| MS.gene054139 | MS.gene22389 | 0.805461 | 1.32E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene22389 | 0.815719 | 8.00E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene22389 | -0.802552 | 5.31E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene22389 | 0.806363 | 8.53E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene22389 | 0.808532 | 2.96E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene22389 | 0.832138 | 1.12E-55 | -1.69E-46 |
| MS.gene054472 | MS.gene22389 | 0.81502 | 1.15E-51 | -1.69E-46 |
| MS.gene054559 | MS.gene22389 | 0.827457 | 1.55E-54 | -1.69E-46 |
| MS.gene054576 | MS.gene22389 | 0.807648 | 4.56E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene22389 | 0.814466 | 1.52E-51 | -1.69E-46 |
| MS.gene054657 | MS.gene22389 | 0.806834 | 6.79E-50 | -1.69E-46 |
| MS.gene055227 | MS.gene22389 | 0.83129 | 1.81E-55 | -1.69E-46 |
| MS.gene055228 | MS.gene22389 | 0.807488 | 4.93E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene22389 | 0.809081 | 2.26E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene22389 | 0.803338 | 3.66E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene22389 | 0.807349 | 5.28E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene22389 | 0.825196 | 5.35E-54 | -1.69E-46 |
| MS.gene055778 | MS.gene22389 | 0.806028 | 1.00E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene22389 | 0.839778 | 1.29E-57 | -1.69E-46 |
| MS.gene055926 | MS.gene22389 | 0.815399 | 9.43E-52 | -1.69E-46 |
| MS.gene056005 | MS.gene22389 | 0.815981 | 7.00E-52 | -1.69E-46 |
| MS.gene05604 | MS.gene22389 | 0.864974 | 8.26E-65 | -1.69E-46 |
| MS.gene056050 | MS.gene22389 | 0.802605 | 5.18E-49 | -1.69E-46 |
| MS.gene056173 | MS.gene22389 | 0.838853 | 2.25E-57 | -1.69E-46 |
| MS.gene056174 | MS.gene22389 | 0.805065 | 1.60E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene22389 | 0.817689 | 2.89E-52 | -1.69E-46 |
| MS.gene056366 | MS.gene22389 | 0.819861 | 9.30E-53 | -1.69E-46 |
| MS.gene056498 | MS.gene22389 | 0.803725 | 3.04E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene22389 | 0.805318 | 1.41E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene22389 | 0.812147 | 4.91E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene22389 | 0.817836 | 2.68E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene22389 | 0.820075 | 8.31E-53 | -1.69E-46 |
| MS.gene057200 | MS.gene22389 | 0.801824 | 7.50E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene22389 | 0.805975 | 1.03E-49 | -1.69E-46 |
| MS.gene057360 | MS.gene22389 | 0.802463 | 5.54E-49 | -1.69E-46 |
| MS.gene057414 | MS.gene22389 | 0.8187 | 1.71E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene22389 | 0.836623 | 8.39E-57 | -1.69E-46 |
| MS.gene057693 | MS.gene22389 | 0.836643 | 8.30E-57 | -1.69E-46 |
| MS.gene057869 | MS.gene22389 | 0.81934 | 1.22E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene22389 | 0.814674 | 1.37E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene22389 | 0.818832 | 1.60E-52 | -1.69E-46 |
| MS.gene058636 | MS.gene22389 | 0.815284 | 1.00E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene22389 | 0.807043 | 6.13E-50 | -1.69E-46 |
| MS.gene059331 | MS.gene22389 | 0.80032 | 1.52E-48 | -1.69E-46 |
| MS.gene059439 | MS.gene22389 | 0.802833 | 4.65E-49 | -1.69E-46 |
| MS.gene059713 | MS.gene22389 | 0.801089 | 1.06E-48 | -1.69E-46 |
| MS.gene059725 | MS.gene22389 | 0.827737 | 1.33E-54 | -1.69E-46 |
| MS.gene060310 | MS.gene22389 | 0.810683 | 1.02E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene22389 | 0.830043 | 3.67E-55 | -1.69E-46 |
| MS.gene060521 | MS.gene22389 | 0.8007 | 1.27E-48 | -1.69E-46 |
| MS.gene06052 | MS.gene22389 | 0.801807 | 7.57E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene22389 | 0.820578 | 6.37E-53 | -1.69E-46 |
| MS.gene060634 | MS.gene22389 | -0.805298 | 1.43E-49 | -1.69E-46 |
| MS.gene060637 | MS.gene22389 | 0.803124 | 4.05E-49 | -1.69E-46 |
| MS.gene060803 | MS.gene22389 | 0.81736 | 3.43E-52 | -1.69E-46 |
| MS.gene060998 | MS.gene22389 | 0.806883 | 6.63E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22389.t1 | MTR_7g102860 | 97.697 | 304 | 7 | 0 | 1 | 304 | 1 | 304 | 0.0 | 608 |
| MS.gene22389.t1 | MTR_0014s0040 | 72.535 | 142 | 37 | 1 | 121 | 262 | 1 | 140 | 6.08e-67 | 207 |
| MS.gene22389.t1 | MTR_0014s0040 | 49.372 | 239 | 63 | 4 | 24 | 262 | 13 | 193 | 2.90e-65 | 204 |
| MS.gene22389.t1 | MTR_5g086320 | 71.681 | 113 | 30 | 2 | 192 | 303 | 46 | 157 | 3.19e-47 | 156 |
| MS.gene22389.t1 | MTR_7g061400 | 73.118 | 93 | 25 | 0 | 43 | 135 | 1 | 93 | 4.29e-42 | 141 |
| MS.gene22389.t1 | MTR_4g009630 | 67.188 | 64 | 19 | 1 | 104 | 167 | 326 | 387 | 2.76e-23 | 99.0 |
| MS.gene22389.t1 | MTR_3g045460 | 25.987 | 304 | 184 | 7 | 38 | 303 | 517 | 817 | 3.34e-20 | 91.3 |
| MS.gene22389.t1 | MTR_3g045460 | 31.148 | 122 | 83 | 1 | 36 | 157 | 189 | 309 | 7.23e-17 | 81.3 |
| MS.gene22389.t1 | MTR_3g045460 | 32.278 | 158 | 100 | 3 | 32 | 189 | 20 | 170 | 1.76e-16 | 80.1 |
| MS.gene22389.t1 | MTR_3g045460 | 27.815 | 151 | 102 | 3 | 23 | 171 | 340 | 485 | 1.53e-14 | 74.3 |
| MS.gene22389.t1 | MTR_8g041580 | 33.607 | 122 | 81 | 0 | 38 | 159 | 21 | 142 | 9.59e-18 | 82.4 |
| MS.gene22389.t1 | MTR_3g045460 | 25.000 | 316 | 184 | 8 | 38 | 303 | 517 | 829 | 4.28e-17 | 82.0 |
| MS.gene22389.t1 | MTR_3g045460 | 31.148 | 122 | 83 | 1 | 36 | 157 | 189 | 309 | 8.51e-17 | 81.3 |
| MS.gene22389.t1 | MTR_3g045460 | 32.278 | 158 | 100 | 3 | 32 | 189 | 20 | 170 | 1.94e-16 | 80.1 |
| MS.gene22389.t1 | MTR_3g045460 | 27.815 | 151 | 102 | 3 | 23 | 171 | 340 | 485 | 1.75e-14 | 74.3 |
| MS.gene22389.t1 | MTR_7g094380 | 23.810 | 294 | 190 | 8 | 38 | 303 | 8 | 295 | 4.45e-15 | 74.7 |
| MS.gene22389.t1 | MTR_5g022570 | 23.024 | 291 | 201 | 8 | 11 | 290 | 1 | 279 | 4.66e-13 | 68.6 |
| MS.gene22389.t1 | MTR_5g086750 | 23.469 | 294 | 177 | 9 | 38 | 303 | 8 | 281 | 2.55e-12 | 66.6 |
| MS.gene22389.t1 | MTR_1g055365 | 26.776 | 183 | 117 | 4 | 16 | 186 | 6 | 183 | 2.84e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22389.t1 | AT4G02550 | 23.664 | 262 | 188 | 2 | 39 | 300 | 22 | 271 | 4.51e-20 | 88.2 |
| MS.gene22389.t1 | AT4G02550 | 23.664 | 262 | 188 | 2 | 39 | 300 | 22 | 271 | 4.51e-20 | 88.2 |
| MS.gene22389.t1 | AT4G02550 | 22.695 | 282 | 195 | 3 | 39 | 300 | 22 | 300 | 7.62e-19 | 85.5 |
| MS.gene22389.t1 | AT4G02550 | 22.695 | 282 | 195 | 3 | 39 | 300 | 22 | 300 | 7.62e-19 | 85.5 |
| MS.gene22389.t1 | AT4G02550 | 22.695 | 282 | 195 | 3 | 39 | 300 | 37 | 315 | 1.01e-18 | 85.1 |
| MS.gene22389.t1 | AT4G02210 | 22.878 | 271 | 193 | 5 | 33 | 303 | 180 | 434 | 4.64e-17 | 81.6 |
| MS.gene22389.t1 | AT4G02210 | 22.878 | 271 | 193 | 5 | 33 | 303 | 180 | 434 | 4.64e-17 | 81.6 |
| MS.gene22389.t1 | AT2G24960 | 25.676 | 222 | 157 | 4 | 34 | 251 | 322 | 539 | 1.35e-14 | 74.7 |
| MS.gene22389.t1 | AT2G24960 | 27.559 | 127 | 89 | 2 | 39 | 163 | 172 | 297 | 2.28e-11 | 65.1 |
| MS.gene22389.t1 | AT2G24960 | 27.559 | 127 | 89 | 2 | 39 | 163 | 172 | 297 | 2.14e-11 | 65.1 |
Find 47 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTGTCTCTACCCTTAT+TGG | 0.077608 | 7.3:+11278596 | None:intergenic |
| AGCTTACTTCACGTGGAATT+TGG | 0.195076 | 7.3:-11280494 | MS.gene22389:CDS |
| AGATGGAAGATAGCAATATT+TGG | 0.218412 | 7.3:-11280537 | MS.gene22389:CDS |
| AACACTTCTTGCACCTCTTT+TGG | 0.228701 | 7.3:+11278489 | None:intergenic |
| GATTTAAGATCATTCTAAAT+TGG | 0.235394 | 7.3:-11278803 | MS.gene22389:CDS |
| GTCGCCAGACTAACGGAATT+TGG | 0.248526 | 7.3:-11280423 | MS.gene22389:CDS |
| ACAATGTACCTGTGCCAATA+AGG | 0.269725 | 7.3:-11278610 | MS.gene22389:CDS |
| AATGATATTCTCAGTCAAAA+TGG | 0.308073 | 7.3:-11280283 | MS.gene22389:CDS |
| ATTCTCAGTCAAAATGGATT+TGG | 0.308207 | 7.3:-11280277 | MS.gene22389:CDS |
| ACTTAGAGATCAAAGAAGTT+TGG | 0.331117 | 7.3:-11280446 | MS.gene22389:CDS |
| GATGGAAGATAGCAATATTT+GGG | 0.350278 | 7.3:-11280536 | MS.gene22389:CDS |
| CTCTAAATCAATATACTCAT+TGG | 0.356023 | 7.3:+11278662 | None:intergenic |
| GATATATGTGCTAAAGATAA+AGG | 0.380018 | 7.3:-11278768 | MS.gene22389:CDS |
| CAGTCAAAATGGATTTGGTT+GGG | 0.385398 | 7.3:-11280272 | MS.gene22389:CDS |
| GATCTTAAATCGGAATCGTT+TGG | 0.392338 | 7.3:+11278815 | None:intergenic |
| CTAGTCTATGCAAGAGGTTT+AGG | 0.393024 | 7.3:-11280583 | MS.gene22389:CDS |
| CTTAGAGATCAAAGAAGTTT+GGG | 0.395713 | 7.3:-11280445 | MS.gene22389:CDS |
| AATTTAGAATGATCTTAAAT+CGG | 0.410859 | 7.3:+11278805 | None:intergenic |
| GCGTCAAACTTTGGCGAAGA+TGG | 0.444193 | 7.3:-11280318 | MS.gene22389:CDS |
| AAACTTTGGCGAAGATGGTA+TGG | 0.445605 | 7.3:-11280313 | MS.gene22389:CDS |
| GTCTCTACCCTTATTGGCAC+AGG | 0.454687 | 7.3:+11278602 | None:intergenic |
| CAATGTACCTGTGCCAATAA+GGG | 0.467272 | 7.3:-11278609 | MS.gene22389:CDS |
| TCCGCTATAAAGCAATCAAT+TGG | 0.468621 | 7.3:-11278428 | MS.gene22389:CDS |
| CAATATTTGGGTTAAGAAAG+AGG | 0.472672 | 7.3:-11280524 | MS.gene22389:CDS |
| TCAGTCAAAATGGATTTGGT+TGG | 0.476299 | 7.3:-11280273 | MS.gene22389:CDS |
| GCAAGAAGTGTTGAATGAAA+TGG | 0.483806 | 7.3:-11278478 | MS.gene22389:CDS |
| CAAAATGGATTTGGTTGGGA+TGG | 0.515934 | 7.3:-11280268 | MS.gene22389:CDS |
| GGTTTAGGCCGCAAGACAAA+GGG | 0.517366 | 7.3:-11280568 | MS.gene22389:CDS |
| TGTGCTAAAGATAAAGGAGG+TGG | 0.540390 | 7.3:-11278762 | MS.gene22389:CDS |
| AGGTTTAGGCCGCAAGACAA+AGG | 0.552206 | 7.3:-11280569 | MS.gene22389:CDS |
| ACCAATTGATTGCTTTATAG+CGG | 0.552413 | 7.3:+11278427 | None:intergenic |
| AATGTAGATGAAGATGAAGA+AGG | 0.559453 | 7.3:-11278687 | MS.gene22389:CDS |
| CTTCACGTGGAATTTGGACA+TGG | 0.561471 | 7.3:-11280488 | MS.gene22389:CDS |
| AACTTTGGCGAAGATGGTAT+GGG | 0.564966 | 7.3:-11280312 | MS.gene22389:CDS |
| CCGTCGAAGATGAAAATGCA+TGG | 0.574985 | 7.3:-11280228 | MS.gene22389:CDS |
| AGTAGAACGTGCAGTTAATG+TGG | 0.581141 | 7.3:-11278733 | MS.gene22389:CDS |
| CAATAAGGGTAGAGACAAAG+AGG | 0.586320 | 7.3:-11278595 | MS.gene22389:CDS |
| TCTAGTCTAGTCTATGCAAG+AGG | 0.592050 | 7.3:-11280589 | MS.gene22389:CDS |
| GGAAGGAAATACTCCAAAAG+AGG | 0.596463 | 7.3:-11278502 | MS.gene22389:CDS |
| AGTTTGGGTCGCCAGACTAA+CGG | 0.608284 | 7.3:-11280430 | MS.gene22389:CDS |
| TGCATGGAATGAATATGTCA+AGG | 0.618662 | 7.3:-11280212 | MS.gene22389:intron |
| ATGCAAGAGCTTACTTCACG+TGG | 0.626769 | 7.3:-11280501 | MS.gene22389:CDS |
| AATAAGGGTAGAGACAAAGA+GGG | 0.651555 | 7.3:-11278594 | MS.gene22389:CDS |
| ATATGTGCTAAAGATAAAGG+AGG | 0.652322 | 7.3:-11278765 | MS.gene22389:CDS |
| CATGGAGCGTGTATTAGCTG+AGG | 0.663124 | 7.3:-11280470 | MS.gene22389:CDS |
| ATCTTCGCCAAAGTTTGACG+CGG | 0.707008 | 7.3:+11280320 | None:intergenic |
| ATAAGGGTAGAGACAAAGAG+GGG | 0.742794 | 7.3:-11278593 | MS.gene22389:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAATAAAAAAAGATAA+AGG | + | chr7.3:11279503-11279522 | None:intergenic | 10.0% |
| !! | GTTAGTATTAAAATTTATTT+GGG | - | chr7.3:11279319-11279338 | MS.gene22389:intron | 10.0% |
| !! | TGTTAGTATTAAAATTTATT+TGG | - | chr7.3:11279318-11279337 | MS.gene22389:intron | 10.0% |
| !! | TTAGTATTAAAATTTATTTG+GGG | - | chr7.3:11279320-11279339 | MS.gene22389:intron | 10.0% |
| !! | AAATAATTGTGAAATCAAAT+AGG | - | chr7.3:11279034-11279053 | MS.gene22389:intron | 15.0% |
| !! | AAATACTTGATTATCTTATT+TGG | - | chr7.3:11279993-11280012 | MS.gene22389:intron | 15.0% |
| !! | TTGTACAAATTAGTAAAAAA+AGG | - | chr7.3:11280409-11280428 | MS.gene22389:CDS | 15.0% |
| !!! | AATTTAGAATGATCTTAAAT+CGG | + | chr7.3:11280134-11280153 | None:intergenic | 15.0% |
| !!! | TATGTTTTAAATTGCTTTTT+GGG | - | chr7.3:11279793-11279812 | MS.gene22389:intron | 15.0% |
| !!! | TTATGTTTTAAATTGCTTTT+TGG | - | chr7.3:11279792-11279811 | MS.gene22389:intron | 15.0% |
| !! | ACAAATTAGTAAAAAAAGGA+TGG | - | chr7.3:11280413-11280432 | MS.gene22389:CDS | 20.0% |
| !! | ATACTTATTGAAAGTTAAAC+AGG | + | chr7.3:11279892-11279911 | None:intergenic | 20.0% |
| !! | GCTTGAAAATAATATGAAAA+TGG | - | chr7.3:11279640-11279659 | MS.gene22389:intron | 20.0% |
| !! | TACTTATTGAAAGTTAAACA+GGG | + | chr7.3:11279891-11279910 | None:intergenic | 20.0% |
| !! | TTCCTAAAAAATAACAGTTT+GGG | + | chr7.3:11279436-11279455 | None:intergenic | 20.0% |
| !! | TTTCCTAAAAAATAACAGTT+TGG | + | chr7.3:11279437-11279456 | None:intergenic | 20.0% |
| !!! | GATTTAAGATCATTCTAAAT+TGG | - | chr7.3:11280133-11280152 | MS.gene22389:intron | 20.0% |
| !!! | TTATTTCATTTTTGCTCTTT+TGG | + | chr7.3:11279667-11279686 | None:intergenic | 20.0% |
| !!! | TTATTTCATTTTTTCCCTTT+TGG | - | chr7.3:11279513-11279532 | MS.gene22389:intron | 20.0% |
| !!! | TTTAGGAAAAATTACACTTT+TGG | - | chr7.3:11279448-11279467 | MS.gene22389:intron | 20.0% |
| ! | AACAACAATCAATAATGAGT+TGG | + | chr7.3:11280069-11280088 | None:intergenic | 25.0% |
| ! | AATGATATTCTCAGTCAAAA+TGG | - | chr7.3:11278653-11278672 | MS.gene22389:CDS | 25.0% |
| ! | ATGTAAGGTTCTATCAATAT+AGG | + | chr7.3:11279008-11279027 | None:intergenic | 25.0% |
| ! | ATTAGTAAAAAAAGGATGGA+AGG | - | chr7.3:11280417-11280436 | MS.gene22389:CDS | 25.0% |
| ! | ATTGTGAAATCAAATAGGAA+AGG | - | chr7.3:11279039-11279058 | MS.gene22389:intron | 25.0% |
| ! | CAATTATTTCGCTTAATGTA+AGG | + | chr7.3:11279023-11279042 | None:intergenic | 25.0% |
| ! | CTCTAAATCAATATACTCAT+TGG | + | chr7.3:11280277-11280296 | None:intergenic | 25.0% |
| ! | CTTATCACAACAAAAGAAAA+GGG | + | chr7.3:11278896-11278915 | None:intergenic | 25.0% |
| ! | GATATATGTGCTAAAGATAA+AGG | - | chr7.3:11280168-11280187 | MS.gene22389:intron | 25.0% |
| ! | GATTTCAAGCTTCAAATATA+TGG | - | chr7.3:11279550-11279569 | MS.gene22389:intron | 25.0% |
| ! | TAAAGCTAAATAATTGAGCT+GGG | - | chr7.3:11278965-11278984 | MS.gene22389:intron | 25.0% |
| ! | TAGCATGTATATTACTACTA+TGG | + | chr7.3:11279955-11279974 | None:intergenic | 25.0% |
| ! | TCATATCAGATATTGAAACA+GGG | - | chr7.3:11279264-11279283 | MS.gene22389:intron | 25.0% |
| ! | TGTTGGATTTAAAAGTGATT+GGG | - | chr7.3:11279830-11279849 | MS.gene22389:intron | 25.0% |
| ! | TTAAAGCTAAATAATTGAGC+TGG | - | chr7.3:11278964-11278983 | MS.gene22389:intron | 25.0% |
| ! | TTACTCAAACAAAGCTAAAT+TGG | + | chr7.3:11280042-11280061 | None:intergenic | 25.0% |
| ! | TTGTTGGATTTAAAAGTGAT+TGG | - | chr7.3:11279829-11279848 | MS.gene22389:intron | 25.0% |
| !!! | CATTTTAATGTTCAGCTTAT+CGG | - | chr7.3:11278578-11278597 | MS.gene22389:CDS | 25.0% |
| !!! | GATTATCTTATTTGGTTTGT+GGG | - | chr7.3:11280001-11280020 | MS.gene22389:intron | 25.0% |
| !!! | TGAGAAAAAGAAGTATCTAA+TGG | - | chr7.3:11280581-11280600 | MS.gene22389:CDS | 25.0% |
| !!! | TGATTATCTTATTTGGTTTG+TGG | - | chr7.3:11280000-11280019 | MS.gene22389:intron | 25.0% |
| AAGACCATAGATTTGAAGAT+TGG | + | chr7.3:11279586-11279605 | None:intergenic | 30.0% | |
| AATGTAGATGAAGATGAAGA+AGG | - | chr7.3:11280249-11280268 | MS.gene22389:CDS | 30.0% | |
| ACCAATTGATTGCTTTATAG+CGG | + | chr7.3:11280512-11280531 | None:intergenic | 30.0% | |
| ACTTAGAGATCAAAGAAGTT+TGG | - | chr7.3:11278490-11278509 | MS.gene22389:CDS | 30.0% | |
| AGACCATAGATTTGAAGATT+GGG | + | chr7.3:11279585-11279604 | None:intergenic | 30.0% | |
| AGATGGAAGATAGCAATATT+TGG | - | chr7.3:11278399-11278418 | MS.gene22389:CDS | 30.0% | |
| AGTTGCCTGAAATTAAGTTA+AGG | + | chr7.3:11279476-11279495 | None:intergenic | 30.0% | |
| ATATGTGCTAAAGATAAAGG+AGG | - | chr7.3:11280171-11280190 | MS.gene22389:intron | 30.0% | |
| ATTCTGGATTGTTATAGCTA+CGG | - | chr7.3:11279858-11279877 | MS.gene22389:intron | 30.0% | |
| CAATATAGGCATTCATAATC+AGG | + | chr7.3:11278994-11279013 | None:intergenic | 30.0% | |
| CATATGGAAATGAACCAAAA+GGG | + | chr7.3:11279530-11279549 | None:intergenic | 30.0% | |
| CTTAGAGATCAAAGAAGTTT+GGG | - | chr7.3:11278491-11278510 | MS.gene22389:CDS | 30.0% | |
| CTTTCAATAAGTATATGCCA+TGG | - | chr7.3:11279898-11279917 | MS.gene22389:intron | 30.0% | |
| GATGGAAGATAGCAATATTT+GGG | - | chr7.3:11278400-11278419 | MS.gene22389:CDS | 30.0% | |
| GCTTATCACAACAAAAGAAA+AGG | + | chr7.3:11278897-11278916 | None:intergenic | 30.0% | |
| GTAGTAATATACATGCTAGT+CGG | - | chr7.3:11279957-11279976 | MS.gene22389:intron | 30.0% | |
| GTCATATCAGATATTGAAAC+AGG | - | chr7.3:11279263-11279282 | MS.gene22389:intron | 30.0% | |
| GTTACCTGCAATTAAGTTAA+GGG | - | chr7.3:11279707-11279726 | MS.gene22389:intron | 30.0% | |
| GTTGCCTGAAATTAAGTTAA+GGG | + | chr7.3:11279475-11279494 | None:intergenic | 30.0% | |
| TAACTTAATTTCAGGCAACT+TGG | - | chr7.3:11279476-11279495 | MS.gene22389:intron | 30.0% | |
| TCATGACCACTACAAAAAAT+AGG | + | chr7.3:11279751-11279770 | None:intergenic | 30.0% | |
| TTATGTCTAGTACTATGCTT+TGG | - | chr7.3:11279389-11279408 | MS.gene22389:intron | 30.0% | |
| TTGGTTAGTGATGTTCATAT+GGG | + | chr7.3:11279195-11279214 | None:intergenic | 30.0% | |
| TTTCCCAATCTTCAAATCTA+TGG | - | chr7.3:11279579-11279598 | MS.gene22389:intron | 30.0% | |
| ! | AATAGGCAACATTAGACTTT+TGG | + | chr7.3:11279734-11279753 | None:intergenic | 30.0% |
| ! | ATTCTCAGTCAAAATGGATT+TGG | - | chr7.3:11278659-11278678 | MS.gene22389:CDS | 30.0% |
| ! | CAATATTTGGGTTAAGAAAG+AGG | - | chr7.3:11278412-11278431 | MS.gene22389:CDS | 30.0% |
| ! | GTATATGCCATGGTTTATTT+TGG | - | chr7.3:11279908-11279927 | MS.gene22389:intron | 30.0% |
| ! | TACTTCTTTTTCTCACTCAA+CGG | + | chr7.3:11280576-11280595 | None:intergenic | 30.0% |
| ! | TCTAAAATTCATACGCAAAC+AGG | + | chr7.3:11279614-11279633 | None:intergenic | 30.0% |
| ! | TGGTTGTGTTTTTCATTTGT+AGG | - | chr7.3:11279409-11279428 | MS.gene22389:intron | 30.0% |
| ! | TTTGAAGCTTGAAATCCATA+TGG | + | chr7.3:11279546-11279565 | None:intergenic | 30.0% |
| ! | TTTTTCTTTGTTGCAGAACT+TGG | + | chr7.3:11280303-11280322 | None:intergenic | 30.0% |
| !! | TTGAGAATCGCTATTTTGTT+TGG | + | chr7.3:11280546-11280565 | None:intergenic | 30.0% |
| !!! | ATGTTGCCTATTTTTTGTAG+TGG | - | chr7.3:11279742-11279761 | MS.gene22389:intron | 30.0% |
| !!! | GACCCAAACTGTTATTTTTT+AGG | - | chr7.3:11279431-11279450 | MS.gene22389:intron | 30.0% |
| !!! | TAAATTGCTTTTTGGGTCTT+AGG | - | chr7.3:11279800-11279819 | MS.gene22389:intron | 30.0% |
| AAACAAAGCTAAATTGGACC+TGG | + | chr7.3:11280036-11280055 | None:intergenic | 35.0% | |
| AACAAAAAACACCAGTGTAG+AGG | + | chr7.3:11278929-11278948 | None:intergenic | 35.0% | |
| AAGGTTGTCATCATCAATGA+AGG | + | chr7.3:11278848-11278867 | None:intergenic | 35.0% | |
| AAGTGATTGGGTTTAGATTC+TGG | - | chr7.3:11279842-11279861 | MS.gene22389:intron | 35.0% | |
| AATAAGGGTAGAGACAAAGA+GGG | - | chr7.3:11280342-11280361 | MS.gene22389:CDS | 35.0% | |
| ACCACAACCAAAATAAACCA+TGG | + | chr7.3:11279918-11279937 | None:intergenic | 35.0% | |
| ATCACAACAAAAGAAAAGGG+AGG | + | chr7.3:11278893-11278912 | None:intergenic | 35.0% | |
| CCATATGGAAATGAACCAAA+AGG | + | chr7.3:11279531-11279550 | None:intergenic | 35.0% | |
| CGTTACCTGCAATTAAGTTA+AGG | - | chr7.3:11279706-11279725 | MS.gene22389:intron | 35.0% | |
| CTTAATTGCAGGTAACGATT+TGG | + | chr7.3:11279703-11279722 | None:intergenic | 35.0% | |
| GACAAAGGGAAAAAGAAAGA+TGG | - | chr7.3:11278382-11278401 | MS.gene22389:CDS | 35.0% | |
| GATCTTAAATCGGAATCGTT+TGG | + | chr7.3:11280124-11280143 | None:intergenic | 35.0% | |
| GTTGGTTAGTGATGTTCATA+TGG | + | chr7.3:11279196-11279215 | None:intergenic | 35.0% | |
| TCCGCTATAAAGCAATCAAT+TGG | - | chr7.3:11280508-11280527 | MS.gene22389:CDS | 35.0% | |
| TGCATGGAATGAATATGTCA+AGG | - | chr7.3:11278724-11278743 | MS.gene22389:CDS | 35.0% | |
| TGGTCCCTTAACTTAATTTC+AGG | - | chr7.3:11279468-11279487 | MS.gene22389:intron | 35.0% | |
| TGGTTAGTGATGTTCATATG+GGG | + | chr7.3:11279194-11279213 | None:intergenic | 35.0% | |
| TTCTGGATTGTTATAGCTAC+GGG | - | chr7.3:11279859-11279878 | MS.gene22389:intron | 35.0% | |
| ! | CAGTCAAAATGGATTTGGTT+GGG | - | chr7.3:11278664-11278683 | MS.gene22389:CDS | 35.0% |
| ! | TCAGTCAAAATGGATTTGGT+TGG | - | chr7.3:11278663-11278682 | MS.gene22389:CDS | 35.0% |
| ! | TTCTTTTTCCCTTTGTCTTG+CGG | + | chr7.3:11278379-11278398 | None:intergenic | 35.0% |
| ! | TTTTCCAAATTCCGTTAGTC+TGG | + | chr7.3:11278520-11278539 | None:intergenic | 35.0% |
| !! | ATTTGGTTTGTGGGCAAAAA+AGG | - | chr7.3:11280010-11280029 | MS.gene22389:intron | 35.0% |
| !! | GCAAGAAGTGTTGAATGAAA+TGG | - | chr7.3:11280458-11280477 | MS.gene22389:CDS | 35.0% |
| !! | TTAGAGGGGGGTATTATATA+CGG | + | chr7.3:11279158-11279177 | None:intergenic | 35.0% |
| !!! | ACACTGGTGTTTTTTGTTAG+AGG | - | chr7.3:11278931-11278950 | MS.gene22389:intron | 35.0% |
| !!! | CACTGGTGTTTTTTGTTAGA+GGG | - | chr7.3:11278932-11278951 | MS.gene22389:intron | 35.0% |
| !!! | CCTTTTGGTTCATTTCCATA+TGG | - | chr7.3:11279528-11279547 | MS.gene22389:intron | 35.0% |
| AAAAGAAAAGGGAGGAAGCA+TGG | + | chr7.3:11278885-11278904 | None:intergenic | 40.0% | |
| AAACTTTGGCGAAGATGGTA+TGG | - | chr7.3:11278623-11278642 | MS.gene22389:CDS | 40.0% | |
| AACTTTGGCGAAGATGGTAT+GGG | - | chr7.3:11278624-11278643 | MS.gene22389:CDS | 40.0% | |
| ACAATGTACCTGTGCCAATA+AGG | - | chr7.3:11280326-11280345 | MS.gene22389:CDS | 40.0% | |
| AGCTTACTTCACGTGGAATT+TGG | - | chr7.3:11278442-11278461 | MS.gene22389:CDS | 40.0% | |
| AGTAGAACGTGCAGTTAATG+TGG | - | chr7.3:11280203-11280222 | MS.gene22389:intron | 40.0% | |
| ATAAGGGTAGAGACAAAGAG+GGG | - | chr7.3:11280343-11280362 | MS.gene22389:CDS | 40.0% | |
| ATGCATATCCAAGAAGAGAG+TGG | + | chr7.3:11279239-11279258 | None:intergenic | 40.0% | |
| CAATAAGGGTAGAGACAAAG+AGG | - | chr7.3:11280341-11280360 | MS.gene22389:CDS | 40.0% | |
| CAATGTACCTGTGCCAATAA+GGG | - | chr7.3:11280327-11280346 | MS.gene22389:CDS | 40.0% | |
| CAGACTTGTGTAAGGAATCA+TGG | + | chr7.3:11279112-11279131 | None:intergenic | 40.0% | |
| CTAGTCTATGCAAGAGGTTT+AGG | - | chr7.3:11278353-11278372 | MS.gene22389:CDS | 40.0% | |
| CTCTTTGTCTCTACCCTTAT+TGG | + | chr7.3:11280343-11280362 | None:intergenic | 40.0% | |
| GGAAGGAAATACTCCAAAAG+AGG | - | chr7.3:11280434-11280453 | MS.gene22389:CDS | 40.0% | |
| GGTATTATATACGGGTAGGA+TGG | + | chr7.3:11279149-11279168 | None:intergenic | 40.0% | |
| GGTCATGTGATTCTGTTAGA+GGG | + | chr7.3:11279173-11279192 | None:intergenic | 40.0% | |
| GTCATGTGATTCTGTTAGAG+GGG | + | chr7.3:11279172-11279191 | None:intergenic | 40.0% | |
| TCATGTGATTCTGTTAGAGG+GGG | + | chr7.3:11279171-11279190 | None:intergenic | 40.0% | |
| TCTAGTCTAGTCTATGCAAG+AGG | - | chr7.3:11278347-11278366 | MS.gene22389:CDS | 40.0% | |
| TCTGGATTGTTATAGCTACG+GGG | - | chr7.3:11279860-11279879 | MS.gene22389:intron | 40.0% | |
| TGAAAAACCGCGTCAAACTT+TGG | - | chr7.3:11278609-11278628 | MS.gene22389:CDS | 40.0% | |
| TGCATATCCAAGAAGAGAGT+GGG | + | chr7.3:11279238-11279257 | None:intergenic | 40.0% | |
| TGGTCCCTTAACTTAATTGC+AGG | + | chr7.3:11279714-11279733 | None:intergenic | 40.0% | |
| TGTGCTAAAGATAAAGGAGG+TGG | - | chr7.3:11280174-11280193 | MS.gene22389:intron | 40.0% | |
| ! | AACACTTCTTGCACCTCTTT+TGG | + | chr7.3:11280450-11280469 | None:intergenic | 40.0% |
| ! | CAAAATGGATTTGGTTGGGA+TGG | - | chr7.3:11278668-11278687 | MS.gene22389:CDS | 40.0% |
| ! | CCATGCATTTTCATCTTCGA+CGG | + | chr7.3:11278711-11278730 | None:intergenic | 40.0% |
| !! | TAGAGGGGGGTATTATATAC+GGG | + | chr7.3:11279157-11279176 | None:intergenic | 40.0% |
| !!! | GCCATGGTTTATTTTGGTTG+TGG | - | chr7.3:11279914-11279933 | MS.gene22389:intron | 40.0% |
| ATCTTCGCCAAAGTTTGACG+CGG | + | chr7.3:11278619-11278638 | None:intergenic | 45.0% | |
| ATGCAAGAGCTTACTTCACG+TGG | - | chr7.3:11278435-11278454 | MS.gene22389:CDS | 45.0% | |
| CATGGCACGGATCAGAATAA+AGG | + | chr7.3:11278867-11278886 | None:intergenic | 45.0% | |
| CATGTGATTCTGTTAGAGGG+GGG | + | chr7.3:11279170-11279189 | None:intergenic | 45.0% | |
| CCGTCGAAGATGAAAATGCA+TGG | - | chr7.3:11278708-11278727 | MS.gene22389:CDS | 45.0% | |
| CTGGATTGTTATAGCTACGG+GGG | - | chr7.3:11279861-11279880 | MS.gene22389:intron | 45.0% | |
| CTTCACGTGGAATTTGGACA+TGG | - | chr7.3:11278448-11278467 | MS.gene22389:CDS | 45.0% | |
| GCATATCCAAGAAGAGAGTG+GGG | + | chr7.3:11279237-11279256 | None:intergenic | 45.0% | |
| GGGTCATGTGATTCTGTTAG+AGG | + | chr7.3:11279174-11279193 | None:intergenic | 45.0% | |
| GGGTCTTAGGTCATGTTTGT+TGG | - | chr7.3:11279813-11279832 | MS.gene22389:intron | 45.0% | |
| ! | AGGGCATTCAGACTTGTGTA+AGG | + | chr7.3:11279120-11279139 | None:intergenic | 45.0% |
| !! | AAATGAAATAAAAAAAATAA+AGG | - | chr7.3:11279676-11279695 | MS.gene22389:intron | 5.0% |
| ACACCAGTGTAGAGGAAGCA+TGG | + | chr7.3:11278921-11278940 | None:intergenic | 50.0% | |
| AGGTTTAGGCCGCAAGACAA+AGG | - | chr7.3:11278367-11278386 | MS.gene22389:CDS | 50.0% | |
| AGTTTGGGTCGCCAGACTAA+CGG | - | chr7.3:11278506-11278525 | MS.gene22389:CDS | 50.0% | |
| CATGGAGCGTGTATTAGCTG+AGG | - | chr7.3:11278466-11278485 | MS.gene22389:CDS | 50.0% | |
| CCAACTCATTCTCTCCCACA+TGG | - | chr7.3:11279211-11279230 | MS.gene22389:intron | 50.0% | |
| CCATGTGGGAGAGAATGAGT+TGG | + | chr7.3:11279214-11279233 | None:intergenic | 50.0% | |
| GCGTCAAACTTTGGCGAAGA+TGG | - | chr7.3:11278618-11278637 | MS.gene22389:CDS | 50.0% | |
| GGTTTAGGCCGCAAGACAAA+GGG | - | chr7.3:11278368-11278387 | MS.gene22389:CDS | 50.0% | |
| GTCGCCAGACTAACGGAATT+TGG | - | chr7.3:11278513-11278532 | MS.gene22389:CDS | 50.0% | |
| GTCTCTACCCTTATTGGCAC+AGG | + | chr7.3:11280337-11280356 | None:intergenic | 50.0% | |
| GTTTGTGGGCAAAAAAGGCC+AGG | - | chr7.3:11280015-11280034 | MS.gene22389:intron | 50.0% | |
| ! | AAAAGGGAGGAAGCATGGCA+CGG | + | chr7.3:11278880-11278899 | None:intergenic | 50.0% |
| !! | GGGGGGTATTATATACGGGT+AGG | + | chr7.3:11279153-11279172 | None:intergenic | 50.0% |
| AAGAAGAGAGTGGGGCCATG+TGG | + | chr7.3:11279229-11279248 | None:intergenic | 55.0% | |
| ACATGGCCCCACTCTCTTCT+TGG | - | chr7.3:11279228-11279247 | MS.gene22389:intron | 55.0% | |
| ACGGGTAGGATGGTGTGTGA+GGG | + | chr7.3:11279139-11279158 | None:intergenic | 55.0% | |
| AGAAGAGAGTGGGGCCATGT+GGG | + | chr7.3:11279228-11279247 | None:intergenic | 55.0% | |
| TACGGGTAGGATGGTGTGTG+AGG | + | chr7.3:11279140-11279159 | None:intergenic | 55.0% | |
| GCGCCATGCTTCCTCTACAC+TGG | - | chr7.3:11278915-11278934 | MS.gene22389:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 11278341 | 11280617 | 11278341 | ID=MS.gene22389 |
| chr7.3 | mRNA | 11278341 | 11280617 | 11278341 | ID=MS.gene22389.t1;Parent=MS.gene22389 |
| chr7.3 | exon | 11280213 | 11280617 | 11280213 | ID=MS.gene22389.t1.exon1;Parent=MS.gene22389.t1 |
| chr7.3 | CDS | 11280213 | 11280617 | 11280213 | ID=cds.MS.gene22389.t1;Parent=MS.gene22389.t1 |
| chr7.3 | exon | 11278341 | 11278850 | 11278341 | ID=MS.gene22389.t1.exon2;Parent=MS.gene22389.t1 |
| chr7.3 | CDS | 11278341 | 11278850 | 11278341 | ID=cds.MS.gene22389.t1;Parent=MS.gene22389.t1 |
| Gene Sequence |
| Protein sequence |
